W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Mon May 8 08:26:10 +14 2023 I: pbuilder-time-stamp: 1683483970 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Sep 23 02:05:12 2022 +14 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc: no acceptable signature found dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.5.0~git20220731.821823b dpkg-source: info: unpacking fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6926/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 8 08:26 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/6926/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/6926/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=6926 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SD2iz1dR/pbuilderrc_chDr --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SD2iz1dR/b2 --logfile b2/build.log --extrapackages usrmerge fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-22-686-pae #1 SMP Debian 5.10.178-3 (2023-04-22) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 24 11:24 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp -rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash -rwxr-xr-x 1 root root 137160 Sep 21 2022 date -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd -rwxr-xr-x 1 root root 108940 Sep 21 2022 df -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir -rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep -rwxr-xr-x 1 root root 34664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln -rwxr-xr-x 1 root root 55600 Mar 24 01:43 login -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls -rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 24 00:20 more -rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount -rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed lrwxrwxrwx 1 root root 9 May 8 08:26 sh -> /bin/bash -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty -rwsr-xr-x 1 root root 83492 Mar 24 00:20 su -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync -rwxr-xr-x 1 root root 598456 Apr 7 04:25 tar -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch -rwxr-xr-x 1 root root 34664 Sep 21 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/6926/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 0.5~), mpi-default-dev, python3-ffcx, xtensor-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 0.5~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on xtensor-dev; however: Package xtensor-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0.5{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libc6-dbg{a} libcamd2{a} libcbor0.8{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcurl4-openssl-dev{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.5{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-cpp-103-1{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102{a} libhdf5-openmpi-hl-100{a} libhdf5-openmpi-hl-cpp-100{a} libhdf5-openmpi-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.26.0{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmetis5{a} libmongoose2{a} libmumps-5.5{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.18{a} libpetsc-real3.18-dev{a} libpetsc3.18-dev-common{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2{a} libproc2-0{a} libpsl5{a} libpsm-infinipath1{a} libpthread-stubs0-dev{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.18{a} libslepc-real3.18-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libxtensor-dev{a} libyaml-0-2{a} libyaml-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} nlohmann-json3-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-distutils{a} python3-ffcx{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-ufl{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtensor-dev{a} xtl-dev{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb gdb-minimal javascript-common ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.18-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-numba valgrind-dbg wget xauth zsh 0 packages upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 194 MB of archives. After unpacking 924 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libcbor0.8 i386 0.8.0-2+b1 [29.8 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libfido2-1 i386 1.12.0-2+b1 [87.0 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 openssh-client i386 1:9.2p1-2 [1004 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libarchive13 i386 3.6.2-1 [385 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-9 [420 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 librhash0 i386 1.4.3-3 [149 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 cmake-data all 3.25.1-1 [2026 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 cmake i386 3.25.1-1 [9767 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 56 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 58 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libgfortran-12-dev i386 12.2.0-14 [761 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 gfortran-12 i386 12.2.0-14 [10.5 MB] Get: 68 http://deb.debian.org/debian bookworm/main i386 gfortran i386 4:12.2.0-3 [1432 B] Get: 69 http://deb.debian.org/debian bookworm/main i386 libnl-3-200 i386 3.7.0-0.2+b1 [66.2 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libnl-route-3-200 i386 3.7.0-0.2+b1 [196 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libibverbs1 i386 44.0-2 [65.8 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 ibverbs-providers i386 44.0-2 [368 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libaec0 i386 1.0.6-1+b1 [22.4 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libsz2 i386 1.0.6-1+b1 [7884 B] Get: 76 http://deb.debian.org/debian bookworm/main i386 libaec-dev i386 1.0.6-1+b1 [21.5 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libsuitesparseconfig5 i386 1:5.12.0+dfsg-2 [23.9 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libamd2 i386 1:5.12.0+dfsg-2 [31.4 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libarpack2 i386 3.8.0-3 [97.4 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libblas-dev i386 3.11.0-2 [151 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 liblapack-dev i386 3.11.0-2 [4187 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libarpack2-dev i386 3.8.0-3 [117 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libbasix0.5 i386 0.5.1-1+b2 [271 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libpkgconf3 i386 1.8.1-1 [38.3 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 pkgconf-bin i386 1.8.1-1 [29.8 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 pkgconf i386 1.8.1-1 [25.9 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 pkg-config i386 1.8.1-1 [13.7 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 libbasix-dev i386 0.5.1-1+b2 [56.9 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libboost-atomic1.74.0 i386 1.74.0+ds1-20 [220 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libboost-atomic1.74-dev i386 1.74.0+ds1-20 [221 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libboost-chrono1.74.0 i386 1.74.0+ds1-20 [229 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libboost-chrono1.74-dev i386 1.74.0+ds1-20 [237 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 libboost-chrono-dev i386 1.74.0.3 [4956 B] Get: 98 http://deb.debian.org/debian bookworm/main i386 libboost-date-time1.74.0 i386 1.74.0+ds1-20 [217 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 libboost-serialization1.74.0 i386 1.74.0+ds1-20 [325 kB] Get: 100 http://deb.debian.org/debian bookworm/main i386 libboost-serialization1.74-dev i386 1.74.0+ds1-20 [368 kB] Get: 101 http://deb.debian.org/debian bookworm/main i386 libboost-date-time1.74-dev i386 1.74.0+ds1-20 [226 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 103 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem1.74.0 i386 1.74.0+ds1-20 [264 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libboost-system1.74.0 i386 1.74.0+ds1-20 [218 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libboost-system1.74-dev i386 1.74.0+ds1-20 [219 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem1.74-dev i386 1.74.0+ds1-20 [286 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem-dev i386 1.74.0.3 [4368 B] Get: 108 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74.0 i386 1.74.0+ds1-20 [509 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74-dev i386 1.74.0+ds1-20 [585 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libboost-iostreams1.74-dev i386 1.74.0+ds1-20 [250 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get: 113 http://deb.debian.org/debian bookworm/main i386 libboost-math1.74.0 i386 1.74.0+ds1-20 [438 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 libboost-math1.74-dev i386 1.74.0+ds1-20 [543 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 libboost-math-dev i386 1.74.0.3 [4536 B] Get: 116 http://deb.debian.org/debian bookworm/main i386 libevent-core-2.1-7 i386 2.1.12-stable-8 [139 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-8 [53.7 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.2 [177 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 librdmacm1 i386 44.0-2 [74.6 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libfabric1 i386 1.17.0-3 [538 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 libhwloc15 i386 2.9.0-1 [168 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 libmunge2 i386 0.5.15-2 [20.3 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libpciaccess0 i386 0.17-2 [53.4 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 libxnvctrl0 i386 525.85.05-1 [13.3 kB] Get: 131 http://deb.debian.org/debian bookworm/main i386 ocl-icd-libopencl1 i386 2.3.1-1 [45.4 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libhwloc-plugins i386 2.9.0-1 [17.8 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 libpmix2 i386 4.2.2-1+b1 [652 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 libopenmpi3 i386 4.1.4-3+b1 [2183 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 libboost-mpi1.74.0 i386 1.74.0+ds1-20 [260 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 openmpi-common all 4.1.4-3 [167 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 libnl-3-dev i386 3.7.0-0.2+b1 [109 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 libnl-route-3-dev i386 3.7.0-0.2+b1 [226 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 libibverbs-dev i386 44.0-2 [683 kB] Get: 140 http://deb.debian.org/debian bookworm/main i386 libnuma1 i386 2.0.16-1 [22.7 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 libnuma-dev i386 2.0.16-1 [37.3 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 libltdl7 i386 2.4.7-5 [394 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 libltdl-dev i386 2.4.7-5 [167 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 libhwloc-dev i386 2.9.0-1 [259 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 libevent-2.1-7 i386 2.1.12-stable-8 [194 kB] Get: 146 http://deb.debian.org/debian bookworm/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-8 [112 kB] Get: 147 http://deb.debian.org/debian bookworm/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-8 [61.5 kB] Get: 148 http://deb.debian.org/debian bookworm/main i386 libevent-dev i386 2.1.12-stable-8 [325 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 150 http://deb.debian.org/debian bookworm/main i386 libpmix-dev i386 4.2.2-1+b1 [975 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 152 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 openmpi-bin i386 4.1.4-3+b1 [196 kB] Get: 154 http://deb.debian.org/debian bookworm/main i386 libopenmpi-dev i386 4.1.4-3+b1 [920 kB] Get: 155 http://deb.debian.org/debian bookworm/main i386 mpi-default-dev i386 1.14 [5552 B] Get: 156 http://deb.debian.org/debian bookworm/main i386 libboost-mpi1.74-dev i386 1.74.0+ds1-20 [281 kB] Get: 157 http://deb.debian.org/debian bookworm/main i386 libboost-mpi-dev i386 1.74.0.3 [4420 B] Get: 158 http://deb.debian.org/debian bookworm/main i386 libboost-program-options1.74.0 i386 1.74.0+ds1-20 [338 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 libboost-program-options1.74-dev i386 1.74.0+ds1-20 [368 kB] Get: 160 http://deb.debian.org/debian bookworm/main i386 libboost-program-options-dev i386 1.74.0.3 [4344 B] Get: 161 http://deb.debian.org/debian bookworm/main i386 libboost-serialization-dev i386 1.74.0.3 [4560 B] Get: 162 http://deb.debian.org/debian bookworm/main i386 libboost-thread1.74.0 i386 1.74.0+ds1-20 [259 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 libboost-thread1.74-dev i386 1.74.0+ds1-20 [270 kB] Get: 164 http://deb.debian.org/debian bookworm/main i386 libboost-thread-dev i386 1.74.0.3 [4356 B] Get: 165 http://deb.debian.org/debian bookworm/main i386 libboost-timer1.74.0 i386 1.74.0+ds1-20 [228 kB] Get: 166 http://deb.debian.org/debian bookworm/main i386 libboost-timer1.74-dev i386 1.74.0+ds1-20 [231 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 libboost-timer-dev i386 1.74.0.3 [4456 B] Get: 168 http://deb.debian.org/debian bookworm/main i386 libbtf1 i386 1:5.12.0+dfsg-2 [24.4 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 libc6-dbg i386 2.36-9 [7060 kB] Get: 170 http://deb.debian.org/debian bookworm/main i386 libcamd2 i386 1:5.12.0+dfsg-2 [32.1 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 libccolamd2 i386 1:5.12.0+dfsg-2 [33.1 kB] Get: 172 http://deb.debian.org/debian bookworm/main i386 libcolamd2 i386 1:5.12.0+dfsg-2 [28.8 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 libmetis5 i386 5.1.0.dfsg-7 [171 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 libcholmod3 i386 1:5.12.0+dfsg-2 [244 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 libcombblas1.16.0 i386 1.6.2-8 [283 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 libcurl4-openssl-dev i386 7.88.1-9 [534 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 libcxsparse3 i386 1:5.12.0+dfsg-2 [65.0 kB] Get: 178 http://deb.debian.org/debian bookworm/main i386 libhdf5-openmpi-103-1 i386 1.10.8+repack1-1 [1217 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 libfftw3-double3 i386 3.3.10-1 [633 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 libfftw3-long3 i386 3.3.10-1 [338 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 libfftw3-single3 i386 3.3.10-1 [646 kB] Get: 182 http://deb.debian.org/debian bookworm/main i386 libfftw3-mpi3 i386 3.3.10-1 [66.8 kB] Get: 183 http://deb.debian.org/debian bookworm/main i386 libptscotch-7.0 i386 7.0.3-1 [840 kB] Get: 184 http://deb.debian.org/debian bookworm/main i386 libsuperlu-dist8 i386 8.1.2+dfsg1-1+b1 [573 kB] Get: 185 http://deb.debian.org/debian bookworm/main i386 libhypre-2.26.0 i386 2.26.0-3 [1421 kB] Get: 186 http://deb.debian.org/debian bookworm/main i386 libklu1 i386 1:5.12.0+dfsg-2 [58.6 kB] Get: 187 http://deb.debian.org/debian bookworm/main i386 mpi-default-bin i386 1.14 [4752 B] Get: 188 http://deb.debian.org/debian bookworm/main i386 libscalapack-openmpi2.2 i386 2.2.1-2+b1 [1443 kB] Get: 189 http://deb.debian.org/debian bookworm/main i386 libmumps-5.5 i386 5.5.1-1 [1820 kB] Get: 190 http://deb.debian.org/debian bookworm/main i386 libspqr2 i386 1:5.12.0+dfsg-2 [84.8 kB] Get: 191 http://deb.debian.org/debian bookworm/main i386 libsuperlu5 i386 5.3.0+dfsg1-2+b1 [168 kB] Get: 192 http://deb.debian.org/debian bookworm/main i386 libumfpack5 i386 1:5.12.0+dfsg-2 [155 kB] Get: 193 http://deb.debian.org/debian bookworm/main i386 libyaml-0-2 i386 0.2.5-1 [55.9 kB] Get: 194 http://deb.debian.org/debian bookworm/main i386 libpetsc-real3.18 i386 3.18.5+dfsg1-1 [5549 kB] Get: 195 http://deb.debian.org/debian bookworm/main i386 libpugixml1v5 i386 1.13-0.2 [91.5 kB] Get: 196 http://deb.debian.org/debian bookworm/main i386 libparpack2 i386 3.8.0-3 [91.6 kB] Get: 197 http://deb.debian.org/debian bookworm/main i386 libslepc-real3.18 i386 3.18.2+dfsg1-2 [1004 kB] Get: 198 http://deb.debian.org/debian bookworm/main i386 libdolfinx-real0.5 i386 1:0.5.2-2+b1 [692 kB] Get: 199 http://deb.debian.org/debian bookworm/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 200 http://deb.debian.org/debian bookworm/main i386 libldl2 i386 1:5.12.0+dfsg-2 [24.2 kB] Get: 201 http://deb.debian.org/debian bookworm/main i386 libmongoose2 i386 1:5.12.0+dfsg-2 [50.1 kB] Get: 202 http://deb.debian.org/debian bookworm/main i386 librbio2 i386 1:5.12.0+dfsg-2 [35.3 kB] Get: 203 http://deb.debian.org/debian bookworm/main i386 libsliplu1 i386 1:5.12.0+dfsg-2 [57.4 kB] Get: 204 http://deb.debian.org/debian bookworm/main i386 libsuitesparse-dev i386 1:5.12.0+dfsg-2 [741 kB] Get: 205 http://deb.debian.org/debian bookworm/main i386 libscotch-7.0 i386 7.0.3-1 [525 kB] Get: 206 http://deb.debian.org/debian bookworm/main i386 libscotch-dev i386 7.0.3-1 [1691 kB] Get: 207 http://deb.debian.org/debian bookworm/main i386 libptscotch-dev i386 7.0.3-1 [1512 kB] Get: 208 http://deb.debian.org/debian bookworm/main i386 libscalapack-openmpi-dev i386 2.2.1-2+b1 [9528 B] Get: 209 http://deb.debian.org/debian bookworm/main i386 libscalapack-mpi-dev i386 2.2.1-2+b1 [4668 B] Get: 210 http://deb.debian.org/debian bookworm/main i386 libfftw3-quad3 i386 3.3.10-1 [1795 kB] Get: 211 http://deb.debian.org/debian bookworm/main i386 libfftw3-bin i386 3.3.10-1 [50.1 kB] Get: 212 http://deb.debian.org/debian bookworm/main i386 libfftw3-dev i386 3.3.10-1 [3201 kB] Get: 213 http://deb.debian.org/debian bookworm/main i386 libfftw3-mpi-dev i386 3.3.10-1 [69.6 kB] Get: 214 http://deb.debian.org/debian bookworm/main i386 libssl-dev i386 3.0.8-1 [2487 kB] Get: 215 http://deb.debian.org/debian bookworm/main i386 opencl-c-headers all 3.0~2023.02.06-1 [43.6 kB] Get: 216 http://deb.debian.org/debian bookworm/main i386 opencl-clhpp-headers all 3.0~2023.02.06-1 [44.4 kB] Get: 217 http://deb.debian.org/debian bookworm/main i386 ocl-icd-opencl-dev i386 2.3.1-1 [11.6 kB] Get: 218 http://deb.debian.org/debian bookworm/main i386 libhdf5-openmpi-fortran-102 i386 1.10.8+repack1-1 [102 kB] Get: 219 http://deb.debian.org/debian bookworm/main i386 libhdf5-openmpi-hl-100 i386 1.10.8+repack1-1 [79.1 kB] Get: 220 http://deb.debian.org/debian bookworm/main i386 libhdf5-openmpi-hl-fortran-100 i386 1.10.8+repack1-1 [46.0 kB] Get: 221 http://deb.debian.org/debian bookworm/main i386 libhdf5-openmpi-cpp-103-1 i386 1.10.8+repack1-1 [136 kB] Get: 222 http://deb.debian.org/debian bookworm/main i386 libhdf5-openmpi-hl-cpp-100 i386 1.10.8+repack1-1 [26.0 kB] Get: 223 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 224 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB] Get: 225 http://deb.debian.org/debian bookworm/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB] Get: 226 http://deb.debian.org/debian bookworm/main i386 libhdf5-openmpi-dev i386 1.10.8+repack1-1 [2821 kB] Get: 227 http://deb.debian.org/debian bookworm/main i386 libhdf5-mpi-dev i386 1.10.8+repack1-1 [20.0 kB] Get: 228 http://deb.debian.org/debian bookworm/main i386 libsuperlu-dev i386 5.3.0+dfsg1-2+b1 [22.4 kB] Get: 229 http://deb.debian.org/debian bookworm/main i386 libsuperlu-dist-dev i386 8.1.2+dfsg1-1+b1 [912 kB] Get: 230 http://deb.debian.org/debian bookworm/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 231 http://deb.debian.org/debian bookworm/main i386 x11proto-dev all 2022.1-1 [599 kB] Get: 232 http://deb.debian.org/debian bookworm/main i386 libxau-dev i386 1:1.0.9-1 [23.3 kB] Get: 233 http://deb.debian.org/debian bookworm/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB] Get: 234 http://deb.debian.org/debian bookworm/main i386 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 235 http://deb.debian.org/debian bookworm/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B] Get: 236 http://deb.debian.org/debian bookworm/main i386 libxcb1-dev i386 1.15-1 [185 kB] Get: 237 http://deb.debian.org/debian bookworm/main i386 libx11-dev i386 2:1.8.4-2 [866 kB] Get: 238 http://deb.debian.org/debian bookworm/main i386 libyaml-dev i386 0.2.5-1 [67.9 kB] Get: 239 http://deb.debian.org/debian bookworm/main i386 libpetsc3.18-dev-common all 3.18.5+dfsg1-1 [254 kB] Get: 240 http://deb.debian.org/debian bookworm/main i386 libhypre-dev i386 2.26.0-3 [1692 kB] Get: 241 http://deb.debian.org/debian bookworm/main i386 libmumps-headers-dev all 5.5.1-1 [35.9 kB] Get: 242 http://deb.debian.org/debian bookworm/main i386 libmumps-dev i386 5.5.1-1 [1758 kB] Get: 243 http://deb.debian.org/debian bookworm/main i386 valgrind i386 1:3.19.0-1 [8876 kB] Get: 244 http://deb.debian.org/debian bookworm/main i386 valgrind-mpi i386 1:3.19.0-1 [135 kB] Get: 245 http://deb.debian.org/debian bookworm/main i386 libpetsc-real3.18-dev i386 3.18.5+dfsg1-1 [6162 kB] Get: 246 http://deb.debian.org/debian bookworm/main i386 libparpack2-dev i386 3.8.0-3 [108 kB] Get: 247 http://deb.debian.org/debian bookworm/main i386 libslepc-real3.18-dev i386 3.18.2+dfsg1-2 [4074 kB] Get: 248 http://deb.debian.org/debian bookworm/main i386 libdolfinx-real-dev i386 1:0.5.2-2+b1 [42.3 kB] Get: 249 http://deb.debian.org/debian bookworm/main i386 libpugixml-dev i386 1.13-0.2 [113 kB] Get: 250 http://deb.debian.org/debian bookworm/main i386 libxml2-dev i386 2.9.14+dfsg-1.2 [845 kB] Get: 251 http://deb.debian.org/debian bookworm/main i386 python3-cffi-backend i386 1.15.1-5+b1 [88.0 kB] Get: 252 http://deb.debian.org/debian bookworm/main i386 python3-ply all 3.11-5 [65.8 kB] Get: 253 http://deb.debian.org/debian bookworm/main i386 python3-pycparser all 2.21-1 [78.8 kB] Get: 254 http://deb.debian.org/debian bookworm/main i386 python3-cffi all 1.15.1-5 [86.2 kB] Get: 255 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 256 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 257 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 258 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 259 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 260 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 261 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-2 [131 kB] Get: 262 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 263 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 264 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 265 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 266 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 267 http://deb.debian.org/debian bookworm/main i386 python3-ufl all 2022.2.0-2 [175 kB] Get: 268 http://deb.debian.org/debian bookworm/main i386 python3-basix i386 0.5.1-1+b2 [152 kB] Get: 269 http://deb.debian.org/debian bookworm/main i386 python3-ffcx all 1:0.5.0-3 [103 kB] Get: 270 http://deb.debian.org/debian bookworm/main i386 xtl-dev all 0.7.2-2.1 [89.5 kB] Get: 271 http://deb.debian.org/debian bookworm/main i386 nlohmann-json3-dev all 3.11.2-2 [259 kB] Get: 272 http://deb.debian.org/debian bookworm/main i386 libxtensor-dev i386 0.24.3-1 [189 kB] Get: 273 http://deb.debian.org/debian bookworm/main i386 libdolfinx-dev i386 1:0.5.2-2+b1 [155 kB] Get: 274 http://deb.debian.org/debian bookworm/main i386 xtensor-dev all 0.24.3-1 [5372 B] Fetched 194 MB in 6s (34.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../005-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../013-libbsd0_0.11.7-2_i386.deb ... Unpacking libbsd0:i386 (0.11.7-2) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../014-libedit2_3.1-20221030-2_i386.deb ... Unpacking libedit2:i386 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:i386. Preparing to unpack .../015-libcbor0.8_0.8.0-2+b1_i386.deb ... Unpacking libcbor0.8:i386 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:i386. Preparing to unpack .../016-libfido2-1_1.12.0-2+b1_i386.deb ... Unpacking libfido2-1:i386 (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../017-openssh-client_1%3a9.2p1-2_i386.deb ... Unpacking openssh-client (1:9.2p1-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../023-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../024-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../025-libarchive13_3.6.2-1_i386.deb ... Unpacking libarchive13:i386 (3.6.2-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../026-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../027-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../028-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../029-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../030-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../031-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../032-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../033-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../034-libcurl4_7.88.1-9_i386.deb ... Unpacking libcurl4:i386 (7.88.1-9) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../035-libjsoncpp25_1.9.5-4_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../036-librhash0_1.4.3-3_i386.deb ... Unpacking librhash0:i386 (1.4.3-3) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../037-libuv1_1.44.2-1_i386.deb ... Unpacking libuv1:i386 (1.44.2-1) ... Selecting previously unselected package cmake-data. 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Setting up libpciaccess0:i386 (0.17-2) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libboost1.74-dev:i386 (1.74.0+ds1-20) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libfftw3-single3:i386 (3.3.10-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up libboost-atomic1.74.0:i386 (1.74.0+ds1-20) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:i386 (0.2.5-1) ... Setting up libboost-program-options1.74.0:i386 (1.74.0+ds1-20) ... Setting up libscotch-7.0:i386 (7.0.3-1) ... Setting up libcbor0.8:i386 (0.8.0-2+b1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libboost-chrono1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libldl2:i386 (1:5.12.0+dfsg-2) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libfftw3-long3:i386 (3.3.10-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libboost-filesystem1.74.0:i386 (1.74.0+ds1-20) ... Setting up libmetis5:i386 (5.1.0.dfsg-7) ... Setting up file (1:5.44-3) ... Setting up libpthread-stubs0-dev:i386 (0.4-1) ... Setting up libbtf1:i386 (1:5.12.0+dfsg-2) ... Setting up libaec0:i386 (1.0.6-1+b1) ... Setting up libpugixml1v5:i386 (1.13-0.2) ... Setting up libc6-dbg:i386 (2.36-9) ... Setting up libboost-program-options1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libpkgconf3:i386 (1.8.1-1) ... Setting up libuv1:i386 (1.44.2-1) ... Setting up libmunge2 (0.5.15-2) ... Setting up libexpat1-dev:i386 (2.5.0-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libboost-program-options-dev:i386 (1.74.0.3) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libboost-system1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libfftw3-quad3:i386 (3.3.10-1) ... Setting up libboost-regex1.74.0:i386 (1.74.0+ds1-20) ... Setting up libproc2-0:i386 (2:4.0.2-3) ... Setting up libssl-dev:i386 (3.0.8-1) ... Setting up libhwloc15:i386 (2.9.0-1) ... Setting up libevent-core-2.1-7:i386 (2.1.12-stable-8) ... Setting up libevent-2.1-7:i386 (2.1.12-stable-8) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:i386 (1.9.5-4) ... Setting up icu-devtools (72.1-3) ... Setting up xtl-dev (0.7.2-2.1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libltdl7:i386 (2.4.7-5) ... Setting up opencl-c-headers (3.0~2023.02.06-1) ... Setting up libfftw3-double3:i386 (3.3.10-1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libboost-atomic1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libmumps-headers-dev (5.5.1-1) ... Setting up libboost-math1.74.0:i386 (1.74.0+ds1-20) ... Setting up libboost-serialization1.74.0:i386 (1.74.0+ds1-20) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up libnuma1:i386 (2.0.16-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:i386 (2.3.1-1) ... Setting up librhash0:i386 (1.4.3-3) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libnl-3-200:i386 (3.7.0-0.2+b1) ... Setting up openmpi-common (4.1.4-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libcxsparse3:i386 (1:5.12.0+dfsg-2) ... Setting up cmake-data (3.25.1-1) ... Setting up libboost-dev:i386 (1.74.0.3) ... Setting up libboost-math1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libboost-filesystem1.74-dev:i386 (1.74.0+ds1-20) ... Setting up nlohmann-json3-dev (3.11.2-2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libboost-date-time1.74.0:i386 (1.74.0+ds1-20) ... Setting up libfido2-1:i386 (1.12.0-2+b1) ... Setting up valgrind (1:3.19.0-1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up valgrind-mpi (1:3.19.0-1) ... Setting up readline-common (8.2-1.3) ... Setting up libboost-timer1.74.0:i386 (1.74.0+ds1-20) ... Setting up libicu-dev:i386 (72.1-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up libsuitesparseconfig5:i386 (1:5.12.0+dfsg-2) ... Setting up libboost-filesystem-dev:i386 (1.74.0.3) ... Setting up libblas-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.0.6-1+b1) ... Setting up librbio2:i386 (1:5.12.0+dfsg-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libboost-thread1.74.0:i386 (1.74.0+ds1-20) ... Setting up libevent-pthreads-2.1-7:i386 (2.1.12-stable-8) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2022.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libamd2:i386 (1:5.12.0+dfsg-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:i386 (2.1.12-stable-8) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxau-dev:i386 (1:1.0.9-1) ... Setting up libcolamd2:i386 (1:5.12.0+dfsg-2) ... Setting up libyaml-dev:i386 (0.2.5-1) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:i386 (3.6.2-1) ... Setting up libboost-chrono-dev:i386 (1.74.0.3) ... Setting up libfftw3-bin (3.3.10-1) ... Setting up libboost-math-dev:i386 (1.74.0.3) ... Setting up libedit2:i386 (3.1-20221030-2) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libxtensor-dev:i386 (0.24.3-1) ... Setting up libpugixml-dev:i386 (1.13-0.2) ... Setting up libaec-dev:i386 (1.0.6-1+b1) ... Setting up libarpack2:i386 (3.8.0-3) ... Setting up libjpeg-dev:i386 (1:2.1.5-2) ... Setting up libsuperlu5:i386 (5.3.0+dfsg1-2+b1) ... Setting up libevent-openssl-2.1-7:i386 (2.1.12-stable-8) ... Setting up libgfortran-12-dev:i386 (12.2.0-14) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up pkgconf:i386 (1.8.1-1) ... Setting up xtensor-dev (0.24.3-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:i386 (2.0.16-1) ... Setting up libnl-route-3-200:i386 (3.7.0-0.2+b1) ... Setting up libsliplu1:i386 (1:5.12.0+dfsg-2) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:i386 (2.4.7-5) ... Setting up libcamd2:i386 (1:5.12.0+dfsg-2) ... Setting up libmongoose2:i386 (1:5.12.0+dfsg-2) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libxml2-dev:i386 (2.9.14+dfsg-1.2) ... Setting up libbasix0.5:i386 (0.5.1-1+b2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up opencl-clhpp-headers (3.0~2023.02.06-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up liblapack-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libboost-timer1.74-dev:i386 (1.74.0+ds1-20) ... Setting up pkg-config:i386 (1.8.1-1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up ocl-icd-opencl-dev:i386 (2.3.1-1) ... Setting up libboost-serialization1.74-dev:i386 (1.74.0+ds1-20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libboost-regex1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libnl-3-dev:i386 (3.7.0-0.2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up libklu1:i386 (1:5.12.0+dfsg-2) ... Setting up libccolamd2:i386 (1:5.12.0+dfsg-2) ... Setting up libcurl4:i386 (7.88.1-9) ... Setting up libx11-6:i386 (2:1.8.4-2) ... Setting up libhwloc-dev:i386 (2.9.0-1) ... Setting up libsuperlu-dev:i386 (5.3.0+dfsg1-2+b1) ... Setting up libbasix-dev:i386 (0.5.1-1+b2) ... Setting up libfftw3-dev:i386 (3.3.10-1) ... Setting up libcholmod3:i386 (1:5.12.0+dfsg-2) ... Setting up libboost-timer-dev:i386 (1.74.0.3) ... Setting up libspqr2:i386 (1:5.12.0+dfsg-2) ... Setting up libibverbs1:i386 (44.0-2) ... Setting up libarpack2-dev:i386 (3.8.0-3) ... Setting up libxcb1-dev:i386 (1.15-1) ... Setting up ibverbs-providers:i386 (44.0-2) ... Setting up openssh-client (1:9.2p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libx11-dev:i386 (2:1.8.4-2) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:i386 (525.85.05-1) ... Setting up libboost-iostreams1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libnl-route-3-dev:i386 (3.7.0-0.2+b1) ... Setting up libboost-date-time1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libumfpack5:i386 (1:5.12.0+dfsg-2) ... Setting up libcurl4-openssl-dev:i386 (7.88.1-9) ... Setting up libboost-serialization-dev:i386 (1.74.0.3) ... Setting up cmake (3.25.1-1) ... Setting up libboost-thread1.74-dev:i386 (1.74.0+ds1-20) ... Setting up libboost-thread-dev:i386 (1.74.0.3) ... Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up librdmacm1:i386 (44.0-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:i386 (3.11.2-6) ... Setting up libsuitesparse-dev:i386 (1:5.12.0+dfsg-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libboost-iostreams-dev:i386 (1.74.0.3) ... Setting up libibverbs-dev:i386 (44.0-2) ... Setting up libhwloc-plugins:i386 (2.9.0-1) ... Setting up libpython3.11-dev:i386 (3.11.2-6) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-cffi-backend:i386 (1.15.1-5+b1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up libfabric1:i386 (1.17.0-3) ... Setting up libpython3-dev:i386 (3.11.2-1+b1) ... Setting up libpmix2:i386 (4.2.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up libopenmpi3:i386 (4.1.4-3+b1) ... Setting up python3-ply (3.11-5) ... Setting up libboost-mpi1.74.0 (1.74.0+ds1-20) ... Setting up libfftw3-mpi3:i386 (3.3.10-1) ... Setting up python3-pycparser (2.21-1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up libpmix-dev:i386 (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-basix (0.5.1-1+b2) ... Setting up libhdf5-openmpi-103-1:i386 (1.10.8+repack1-1) ... Setting up libptscotch-7.0:i386 (7.0.3-1) ... Setting up libparpack2:i386 (3.8.0-3) ... Setting up libcombblas1.16.0:i386 (1.6.2-8) ... Setting up python3-ufl (2022.2.0-2) ... Setting up libsuperlu-dist8:i386 (8.1.2+dfsg1-1+b1) ... Setting up python3-cffi (1.15.1-5) ... Setting up libfftw3-mpi-dev:i386 (3.3.10-1) ... Setting up mpi-default-bin (1.14) ... Setting up libsuperlu-dist-dev:i386 (8.1.2+dfsg1-1+b1) ... Setting up python3-ffcx (1:0.5.0-3) ... Setting up libhdf5-openmpi-fortran-102:i386 (1.10.8+repack1-1) ... Setting up libhdf5-openmpi-hl-100:i386 (1.10.8+repack1-1) ... Setting up libopenmpi-dev:i386 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up libhdf5-openmpi-cpp-103-1:i386 (1.10.8+repack1-1) ... Setting up libhdf5-openmpi-hl-cpp-100:i386 (1.10.8+repack1-1) ... Setting up libscalapack-openmpi2.2:i386 (2.2.1-2+b1) ... Setting up libhdf5-openmpi-hl-fortran-100:i386 (1.10.8+repack1-1) ... Setting up libhypre-2.26.0:i386 (2.26.0-3) ... Setting up libmumps-5.5:i386 (5.5.1-1) ... Setting up libpetsc-real3.18:i386 (3.18.5+dfsg1-1) ... update-alternatives: using /usr/lib/i386-linux-gnu/libpetsc_real.so.3.18.5 to provide /usr/lib/i386-linux-gnu/libpetsc.so.3.18 (libpetsc.so.3.18) in auto mode Setting up libslepc-real3.18 (3.18.2+dfsg1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/libslepc_real.so.3.18.2 to provide /usr/lib/i386-linux-gnu/libslepc.so.3.18 (libslepc.so.3.18) in auto mode Setting up libscalapack-openmpi-dev:i386 (2.2.1-2+b1) ... Setting up mpi-default-dev (1.14) ... Setting up libdolfinx-real0.5:i386 (1:0.5.2-2+b1) ... Setting up libscalapack-mpi-dev:i386 (2.2.1-2+b1) ... Setting up libhdf5-openmpi-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:i386 (5.5.1-1) ... Setting up libscotch-dev (7.0.3-1) ... Setting up libboost-mpi1.74-dev (1.74.0+ds1-20) ... Setting up libparpack2-dev:i386 (3.8.0-3) ... Setting up libhypre-dev:i386 (2.26.0-3) ... Setting up libptscotch-dev (7.0.3-1) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libhdf5-mpi-dev (1.10.8+repack1-1) ... Setting up libpetsc3.18-dev-common (3.18.5+dfsg1-1) ... Setting up libpetsc-real3.18-dev:i386 (3.18.5+dfsg1-1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.18/i386-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/libpetsc_real.so.3.18.5 to provide /usr/lib/i386-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.18/i386-linux-gnu-real to provide /usr/lib/petscdir/3.18 (petsc3.18) in auto mode Setting up libslepc-real3.18-dev (3.18.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.18/i386-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/libslepc_real.so.3.18.2 to provide /usr/lib/i386-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.18/i386-linux-gnu-real to provide /usr/lib/slepcdir/3.18 (slepc3.18) in auto mode Setting up libdolfinx-real-dev:i386 (1:0.5.2-2+b1) ... Setting up libdolfinx-dev:i386 (1:0.5.2-2+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/6926/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/6926/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.5.0~git20220731.821823b-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found Python3: /usr/bin/python3 (found version "3.11.2") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/i386-linux-gnu/libcrypto.so;/usr/lib/i386-linux-gnu/libcurl.so;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libdl.a;/usr/lib/i386-linux-gnu/libm.so (found version "1.10.8") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -D_FILE_OFFSET_BITS=64 -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/i386-linux-gnu/libcrypto.so;/usr/lib/i386-linux-gnu/libcurl.so;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libdl.a;/usr/lib/i386-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -D_FILE_OFFSET_BITS=64 -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/i386-linux-gnu/libcrypto.so;/usr/lib/i386-linux-gnu/libcurl.so;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libdl.a;/usr/lib/i386-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found Boost 1.74.0 at /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu/CMakeFiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' [ 10%] Generating Poisson.c [ 20%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Poisson.py ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Elasticity.py cd "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' [ 30%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o [ 50%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 50%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o 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-ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mesh.cpp" [ 90%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o [ 90%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o [ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o [ 90%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 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/usr/lib/slepcdir/slepc3.18/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu/Poisson.c" [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro "CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o" "CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o" -o dolfinx-scaling-test /usr/lib/i386-linux-gnu/libdolfinx_real.so.0.5.2 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/i386-linux-gnu/libpugixml.so.1.13 /usr/lib/i386-linux-gnu/libbasix.so.0.5.1 /usr/lib/i386-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.18/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== 2023-05-08 08:27:59.585 ( 0.191s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-08 08:27:59.585 ( 0.191s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-08 08:27:59.585 ( 0.191s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-08 08:27:59.653 ( 0.259s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-08 08:27:59.654 ( 0.260s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:27:59.654 ( 0.260s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:27:59.654 ( 0.260s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-08 08:27:59.658 ( 0.264s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) 2023-05-08 08:27:59.658 ( 0.264s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-08 08:28:08.047 ( 8.654s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-08 08:28:08.050 ( 8.657s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-08 08:28:08.053 ( 8.660s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-08 08:28:08.081 ( 8.687s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(120) 16631-1250 2023-05-08 08:28:08.084 ( 8.691s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-08 08:28:08.088 ( 8.694s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-08 08:28:08.088 ( 8.694s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-08 08:28:08.100 ( 8.706s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.100 ( 8.707s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.100 ( 8.707s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.100 ( 8.707s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.103 ( 8.709s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.103 ( 8.709s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.103 ( 8.709s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:08.103 ( 8.709s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:08.103 ( 8.709s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.103 ( 8.709s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.106 ( 8.713s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:08.106 ( 8.713s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:08.106 ( 8.713s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-08 08:28:08.107 ( 8.713s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.107 ( 8.713s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.107 ( 8.713s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2023-05-08 08:28:08.108 ( 8.714s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 UnitCube (24x19x19) to be refined 0 times 2023-05-08 08:28:08.116 ( 8.723s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.117 ( 8.723s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.151 ( 8.758s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.151 ( 8.758s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.153 ( 8.760s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:08.153 ( 8.760s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-08 08:28:08.155 ( 8.761s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-08 08:28:08.157 ( 8.763s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.157 ( 8.763s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.157 ( 8.764s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.157 ( 8.764s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.157 ( 8.764s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:08.157 ( 8.764s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:08.158 ( 8.764s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:08.158 ( 8.764s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:08.158 ( 8.765s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-08 08:28:08.159 ( 8.765s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-08 08:28:08.159 ( 8.765s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-08 08:28:08.159 ( 8.765s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:08.183 ( 8.790s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 215 to 545 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2023-05-08 08:28:08.354 ( 8.960s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.0664 operator = 1.26924 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.03306 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=216, cols=216, bs=6 package used to perform factorization: petsc total: nonzeros=45000, allocated nonzeros=45000 using I-node routines: found 50 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=216, cols=216, bs=6 total: nonzeros=43560, allocated nonzeros=43560 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 58 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=216, cols=216, bs=6 total: nonzeros=43560, allocated nonzeros=43560 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 58 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.228474, max 2.51322 eigenvalues provided (min 1.19903e-06, max 2.28474) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1776, cols=1776, bs=6 total: nonzeros=293400, allocated nonzeros=293400 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 174 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.258345, max 2.84179 eigenvalues provided (min 0.0728803, max 2.58345) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3366 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3366 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 8.527186 8.527186 Build dofmap data | 2 0.003068 0.006135 Build sparsity | 1 0.004829 0.004829 Compute connectivity 2-3 | 1 0.000581 0.000581 Compute dof reordering map | 2 0.000184 0.000368 Compute entities of dim = 2 | 1 0.045152 0.045152 Compute graph partition (SCOTCH) | 1 8.373885 8.373885 Compute local part of mesh dual graph | 2 0.047029 0.094058 Compute local-to-local map | 1 0.000569 0.000569 Compute non-local part of mesh dual graph | 1 0.047654 0.047654 Compute-local-to-global links for global/local adjacency list | 1 0.000321 0.000321 Distribute AdjacencyList nodes to destination ranks | 1 0.029651 0.029651 Distribute row-wise data (scalable) | 1 0.000817 0.000817 Extract partition boundaries from SCOTCH graph | 1 0.000579 0.000579 GPS: create_level_structure | 3 0.000395 0.001976 Get SCOTCH graph data | 1 0.000008 0.000008 Gibbs-Poole-Stockmeyer ordering | 1 0.003975 0.003975 Init MPI | 1 0.185941 0.185941 Init PETSc | 1 0.001076 0.001076 Init dofmap from element dofmap | 2 0.001866 0.003733 Init logging | 1 0.000062 0.000062 PETSc Krylov solver | 1 0.673742 0.673742 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000865 0.000865 SCOTCH: call SCOTCH_dgraphHalo | 1 0.035720 0.035720 SCOTCH: call SCOTCH_dgraphPart | 1 8.342301 8.342301 SparsityPattern::assemble | 1 0.007238 0.007238 Topology: create | 1 0.016367 0.016367 Topology: determine shared index ownership | 1 0.001438 0.001438 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.002727 0.002727 ZZZ Assemble matrix | 1 0.153350 0.153350 ZZZ Assemble vector | 1 0.006852 0.006852 ZZZ Create Mesh | 1 8.527367 8.527367 ZZZ Create RHS function | 1 0.013179 0.013179 ZZZ Create boundary conditions | 1 0.001380 0.001380 ZZZ Create facets and facet->cell connectivity | 1 0.045862 0.045862 ZZZ Create forms | 1 0.000081 0.000081 ZZZ Create near-nullspace | 1 0.006502 0.006502 ZZZ FunctionSpace | 1 0.004387 0.004387 ZZZ Solve | 1 0.676478 0.676478 *** Number of Krylov iterations: 20 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Mon May 8 08:28:09 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 9.450e+00 1.000 9.450e+00 Objects: 4.630e+02 1.004 4.617e+02 Flops: 2.164e+08 1.083 2.056e+08 6.168e+08 Flops/sec: 2.290e+07 1.083 2.176e+07 6.528e+07 MPI Msg Count: 7.950e+02 1.044 7.733e+02 2.320e+03 MPI Msg Len (bytes): 6.407e+06 1.351 7.294e+03 1.692e+07 MPI Reductions: 6.340e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 9.4495e+00 100.0% 6.1684e+08 100.0% 2.320e+03 100.0% 7.294e+03 100.0% 6.160e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 103 1.0 5.3409e-02 8.7 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 0 0 6 0 16 0 0 6 0 17 0 BuildTwoSidedF 86 1.0 5.3355e-02 9.0 0.00e+00 0.0 1.1e+02 3.9e+04 8.6e+01 0 0 5 26 14 0 0 5 26 14 0 MatMult 208 1.0 1.4586e-01 1.0 1.19e+08 1.1 1.3e+03 5.5e+03 2.0e+00 2 55 55 41 0 2 55 55 41 0 2310 MatMultAdd 42 1.0 2.1641e-02 1.6 9.90e+06 1.1 1.7e+02 1.4e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 1317 MatMultTranspose 42 1.0 1.8979e-02 1.1 9.91e+06 1.1 1.8e+02 1.3e+03 2.0e+00 0 5 8 1 0 0 5 8 1 0 1503 MatSolve 21 0.0 1.8524e-03 0.0 1.89e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1018 MatLUFactorSym 1 1.0 1.6880e-03 120.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 4.3216e-03 1653.9 6.08e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1407 MatConvert 1 1.0 4.5952e-04 1.1 0.00e+00 0.0 1.2e+01 7.0e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 MatScale 4 1.0 7.5619e-04 1.1 4.71e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1794 MatResidual 42 1.0 2.6097e-02 1.0 2.30e+07 1.1 2.5e+02 5.2e+03 0.0e+00 0 11 11 8 0 0 11 11 8 0 2486 MatAssemblyBegin 59 1.0 6.9988e-02 3.0 0.00e+00 0.0 1.1e+02 3.9e+04 3.0e+01 1 0 5 26 5 1 0 5 26 5 0 MatAssemblyEnd 59 1.0 3.4007e-02 1.0 8.76e+04 2.0 0.0e+00 0.0e+00 9.6e+01 0 0 0 0 15 0 0 0 0 16 6 MatGetRowIJ 1 0.0 4.2805e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 8.2215e-03 1.0 0.00e+00 0.0 1.0e+01 4.2e+04 2.8e+01 0 0 0 2 4 0 0 0 2 5 0 MatGetOrdering 1 0.0 1.0979e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.2911e-02 1.0 1.40e+05 1.0 2.4e+02 7.5e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 32 MatZeroEntries 3 1.0 3.2171e-04 2.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.0861e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 1.1889e-02 1.0 1.16e+05 1.1 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 28 MatTranspose 10 1.0 8.0839e-03 1.1 0.00e+00 0.0 9.0e+01 2.1e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 MatMatMultSym 9 1.0 5.4936e-02 1.1 0.00e+00 0.0 5.1e+01 1.2e+04 2.8e+01 1 0 2 4 4 1 0 2 4 5 0 MatMatMultNum 3 1.0 1.1770e-02 1.0 6.57e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 1577 MatPtAPSymbolic 3 1.0 1.4535e-01 1.0 0.00e+00 0.0 9.9e+01 3.5e+04 2.1e+01 2 0 4 21 3 2 0 4 21 3 0 MatPtAPNumeric 3 1.0 2.2347e-01 1.0 5.81e+07 1.2 3.0e+01 9.3e+04 1.5e+01 2 26 1 16 2 2 26 1 16 2 706 MatGetLocalMat 9 1.0 3.5794e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 4.5985e-03 1.1 0.00e+00 0.0 1.2e+02 3.1e+04 1.0e+00 0 0 5 22 0 0 0 5 22 0 0 VecMDot 20 1.0 1.1435e-03 1.3 1.20e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 3057 VecTDot 40 1.0 1.5307e-03 1.4 8.18e+05 1.1 0.0e+00 0.0e+00 4.0e+01 0 0 0 0 6 0 0 0 0 6 1568 VecNorm 43 1.0 1.5857e-03 1.3 6.70e+05 1.1 0.0e+00 0.0e+00 4.3e+01 0 0 0 0 7 0 0 0 0 7 1235 VecScale 22 1.0 1.0661e-04 1.0 1.20e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3279 VecCopy 130 1.0 7.4945e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 194 1.0 4.7467e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 42 1.0 9.7762e-04 1.1 8.40e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2520 VecAYPX 271 1.0 3.3364e-03 1.1 2.22e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1942 VecAXPBYCZ 84 1.0 1.2914e-03 1.2 2.29e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5167 VecMAXPY 22 1.0 6.1454e-04 1.1 1.42e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 6722 VecAssemblyBegin 57 1.0 7.7322e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 57 1.0 9.5720e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 190 1.0 3.1869e-03 1.1 1.04e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 947 VecScatterBegin 350 1.0 4.3606e-03 1.1 0.00e+00 0.0 1.8e+03 4.1e+03 8.0e+00 0 0 79 45 1 0 0 79 45 1 0 VecScatterEnd 350 1.0 3.2831e-02 1.8 1.26e+04 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1 VecNormalize 22 1.0 7.1749e-04 1.4 3.60e+05 1.1 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 1461 SFSetGraph 35 1.0 2.4838e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 17 1.0 1.0067e-03 1.3 0.00e+00 0.0 1.6e+02 4.9e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 SFBcastBegin 15 1.0 1.1285e-04 1.1 0.00e+00 0.0 9.0e+01 6.3e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 SFBcastEnd 15 1.0 9.3265e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 6.1348e-05 1.3 0.00e+00 0.0 1.8e+01 5.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 4.7497e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 369 1.0 1.6492e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 369 1.0 4.0698e-04 1.0 1.26e+04 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 70 KSPSetUp 7 1.0 2.6926e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 KSPSolve 1 1.0 1.8720e-01 1.0 1.35e+08 1.1 1.5e+03 4.6e+03 6.7e+01 2 64 64 40 11 2 64 64 40 11 2100 KSPGMRESOrthog 20 1.0 1.7296e-03 1.2 2.40e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 4042 PCSetUp_GAMG+ 1 1.0 4.8404e-01 1.0 7.92e+07 1.2 8.0e+02 1.1e+04 5.0e+02 5 35 35 53 79 5 35 35 53 81 450 PCGAMGCreateG 2 1.0 1.9853e-02 1.0 5.08e+04 1.1 6.0e+01 2.9e+03 4.4e+01 0 0 3 1 7 0 0 3 1 7 7 GAMG Coarsen 2 1.0 1.3897e-02 1.0 1.40e+05 1.0 2.4e+02 7.5e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 29 GAMG MIS/Agg 2 1.0 1.2933e-02 1.0 1.40e+05 1.0 2.4e+02 7.5e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 32 PCGAMGProl 2 1.0 1.5838e-02 1.0 0.00e+00 0.0 1.9e+02 2.0e+03 1.9e+02 0 0 8 2 30 0 0 8 2 31 0 GAMG Prol-col 2 1.0 6.0633e-03 1.0 0.00e+00 0.0 1.8e+02 7.3e+02 1.7e+02 0 0 8 1 27 0 0 8 1 28 0 GAMG Prol-lift 2 1.0 9.4686e-03 1.0 0.00e+00 0.0 1.2e+01 2.0e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 6.2474e-02 1.0 2.10e+07 1.1 1.9e+02 8.5e+03 8.2e+01 1 10 8 10 13 1 10 8 10 13 956 GAMG smooth 2 1.0 4.3613e-02 1.0 7.10e+06 1.1 4.8e+01 2.0e+04 2.6e+01 0 3 2 6 4 0 3 2 6 4 461 PCGAMGCreateL 2 1.0 3.7101e-01 1.0 5.80e+07 1.2 1.2e+02 5.5e+04 7.7e+01 4 26 5 39 12 4 26 5 39 12 424 GAMG PtAP 2 1.0 3.6212e-01 1.0 5.80e+07 1.2 9.6e+01 6.5e+04 2.4e+01 4 26 4 37 4 4 26 4 37 4 434 GAMG Reduce 1 1.0 8.9996e-03 1.0 0.00e+00 0.0 2.5e+01 1.8e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 PCGAMG Gal l00 1 1.0 2.4881e-01 1.0 3.55e+07 1.0 4.8e+01 8.4e+04 1.2e+01 3 17 2 24 2 3 17 2 24 2 425 PCGAMG Opt l00 1 1.0 3.0160e-02 1.0 5.12e+06 1.0 2.4e+01 3.2e+04 1.0e+01 0 2 1 5 2 0 2 1 5 2 498 PCGAMG Gal l01 1 1.0 1.1330e-01 1.0 2.25e+07 1.9 4.8e+01 4.5e+04 1.2e+01 1 8 2 13 2 1 8 2 13 2 456 PCGAMG Opt l01 1 1.0 6.7391e-03 1.0 1.44e+06 1.5 2.4e+01 8.2e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 522 PCSetUp 2 1.0 4.9023e-01 1.0 7.92e+07 1.1 8.0e+02 1.1e+04 5.0e+02 5 36 35 53 79 5 36 35 53 81 456 PCSetUpOnBlocks 21 1.0 6.2885e-03 36.4 6.08e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 967 PCApply 21 1.0 1.6301e-01 1.0 1.16e+08 1.1 1.4e+03 4.2e+03 6.0e+00 2 55 59 34 1 2 55 59 34 1 2064 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 106 106 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 3 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 6.456e-07 Average time for MPI_Barrier(): 3.523e-06 Average time for zero size MPI_Send(): 5.514e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/i386-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-i686-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/12 -L/lib/i386-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak Option left: name:-mg_levels_esteig_ksp_type value: cg 2023-05-08 08:28:09.094 ( 9.700s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== elasticity strong scaling (3 processes with ndofs=30000) ==== 2023-05-08 08:28:09.361 ( 0.163s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-08 08:28:09.361 ( 0.164s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-08 08:28:09.361 ( 0.164s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-08 08:28:09.388 ( 0.190s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-08 08:28:09.432 ( 0.234s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:09.433 ( 0.235s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:09.433 ( 0.235s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-08 08:28:09.436 ( 0.238s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) 2023-05-08 08:28:09.436 ( 0.239s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-08 08:28:17.569 ( 8.371s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-08 08:28:17.569 ( 8.371s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-08 08:28:17.572 ( 8.374s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-08 08:28:17.599 ( 8.401s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(121) 16285-636 2023-05-08 08:28:17.603 ( 8.405s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-08 08:28:17.605 ( 8.408s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-08 08:28:17.605 ( 8.408s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-08 08:28:17.617 ( 8.419s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.618 ( 8.420s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.618 ( 8.420s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.618 ( 8.420s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.620 ( 8.422s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.620 ( 8.422s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.620 ( 8.422s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:17.620 ( 8.422s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:17.620 ( 8.422s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.620 ( 8.422s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.623 ( 8.425s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:17.623 ( 8.426s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:17.623 ( 8.426s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-08 08:28:17.624 ( 8.426s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.624 ( 8.426s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.624 ( 8.426s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (24x19x19) to be refined 0 times 2023-05-08 08:28:17.625 ( 8.427s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2023-05-08 08:28:17.633 ( 8.435s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.633 ( 8.436s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.668 ( 8.471s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.669 ( 8.471s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.670 ( 8.472s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:17.670 ( 8.472s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-08 08:28:17.672 ( 8.474s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-08 08:28:17.674 ( 8.476s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.674 ( 8.476s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.674 ( 8.476s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.674 ( 8.476s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.674 ( 8.476s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:17.674 ( 8.476s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:17.675 ( 8.477s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:17.675 ( 8.477s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:17.675 ( 8.477s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-08 08:28:17.676 ( 8.478s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-08 08:28:17.676 ( 8.478s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-08 08:28:17.676 ( 8.478s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:17.700 ( 8.503s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 221 to 568 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2023-05-08 08:28:17.869 ( 8.672s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.0662 operator = 1.26587 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.03811 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=234, cols=234, bs=6 package used to perform factorization: petsc total: nonzeros=52956, allocated nonzeros=52956 using I-node routines: found 56 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=234, cols=234, bs=6 total: nonzeros=51012, allocated nonzeros=51012 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 67 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=234, cols=234, bs=6 total: nonzeros=51012, allocated nonzeros=51012 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 67 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.208765, max 2.29641 eigenvalues provided (min 1.48918e-06, max 2.08765) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1752, cols=1752, bs=6 total: nonzeros=281736, allocated nonzeros=281736 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 186 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.258597, max 2.84457 eigenvalues provided (min 0.0732316, max 2.58597) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3435 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3435 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 8.265892 8.265892 Build dofmap data | 2 0.002890 0.005780 Build sparsity | 1 0.004932 0.004932 Compute connectivity 2-3 | 1 0.000544 0.000544 Compute dof reordering map | 2 0.000181 0.000361 Compute entities of dim = 2 | 1 0.045211 0.045211 Compute graph partition (SCOTCH) | 1 8.131086 8.131086 Compute local part of mesh dual graph | 2 0.046766 0.093532 Compute local-to-local map | 1 0.000545 0.000545 Compute non-local part of mesh dual graph | 1 0.048019 0.048019 Compute-local-to-global links for global/local adjacency list | 1 0.000307 0.000307 Distribute AdjacencyList nodes to destination ranks | 1 0.004739 0.004739 Distribute row-wise data (scalable) | 1 0.000839 0.000839 Extract partition boundaries from SCOTCH graph | 1 0.000611 0.000611 GPS: create_level_structure | 2 0.000415 0.001165 Get SCOTCH graph data | 1 0.000009 0.000009 Gibbs-Poole-Stockmeyer ordering | 1 0.003123 0.003123 Init MPI | 1 0.162590 0.162590 Init PETSc | 1 0.007923 0.007923 Init dofmap from element dofmap | 2 0.001783 0.003565 Init logging | 1 0.000043 0.000043 PETSc Krylov solver | 1 0.667344 0.667344 SCOTCH: call SCOTCH_dgraphBuild | 1 0.001007 0.001007 SCOTCH: call SCOTCH_dgraphHalo | 1 0.019871 0.019871 SCOTCH: call SCOTCH_dgraphPart | 1 8.116055 8.116055 SparsityPattern::assemble | 1 0.007956 0.007956 Topology: create | 1 0.015667 0.015667 Topology: determine shared index ownership | 1 0.001104 0.001104 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.002565 0.002565 ZZZ Assemble matrix | 1 0.149781 0.149781 ZZZ Assemble vector | 1 0.007906 0.007906 ZZZ Create Mesh | 1 8.266139 8.266139 ZZZ Create RHS function | 1 0.013387 0.013387 ZZZ Create boundary conditions | 1 0.001246 0.001246 ZZZ Create facets and facet->cell connectivity | 1 0.045812 0.045812 ZZZ Create forms | 1 0.000082 0.000082 ZZZ Create near-nullspace | 1 0.006284 0.006284 ZZZ FunctionSpace | 1 0.004178 0.004178 ZZZ Solve | 1 0.670042 0.670042 *** Number of Krylov iterations: 20 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Mon May 8 08:28:18 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 9.180e+00 1.000 9.180e+00 Objects: 4.630e+02 1.004 4.617e+02 Flops: 2.087e+08 1.042 2.050e+08 6.151e+08 Flops/sec: 2.274e+07 1.042 2.234e+07 6.701e+07 MPI Msg Count: 7.950e+02 1.044 7.733e+02 2.320e+03 MPI Msg Len (bytes): 6.271e+06 1.395 7.075e+03 1.642e+07 MPI Reductions: 6.340e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 9.1801e+00 100.0% 6.1512e+08 100.0% 2.320e+03 100.0% 7.075e+03 100.0% 6.160e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 103 1.0 4.6897e-02 5.4 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 0 0 6 0 16 0 0 6 0 17 0 BuildTwoSidedF 86 1.0 4.6864e-02 5.5 0.00e+00 0.0 1.1e+02 3.7e+04 8.6e+01 0 0 5 25 14 0 0 5 25 14 0 MatMult 208 1.0 1.4420e-01 1.0 1.15e+08 1.0 1.3e+03 5.4e+03 2.0e+00 2 54 55 42 0 2 54 55 42 0 2321 MatMultAdd 42 1.0 2.3086e-02 1.9 9.62e+06 1.0 1.7e+02 1.3e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 1227 MatMultTranspose 42 1.0 1.8405e-02 1.1 9.62e+06 1.0 1.8e+02 1.2e+03 2.0e+00 0 5 8 1 0 0 5 8 1 0 1540 MatSolve 21 0.0 2.0366e-03 0.0 2.22e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1090 MatLUFactorSym 1 1.0 2.2926e-03 166.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 5.2312e-03 1845.9 7.56e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1445 MatConvert 1 1.0 4.9953e-04 1.1 0.00e+00 0.0 1.2e+01 7.1e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 MatScale 4 1.0 7.3854e-04 1.0 4.58e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1826 MatResidual 42 1.0 2.5905e-02 1.0 2.21e+07 1.1 2.5e+02 5.1e+03 0.0e+00 0 10 11 8 0 0 10 11 8 0 2486 MatAssemblyBegin 59 1.0 6.2840e-02 2.3 0.00e+00 0.0 1.1e+02 3.7e+04 3.0e+01 0 0 5 25 5 0 0 5 25 5 0 MatAssemblyEnd 59 1.0 3.2236e-02 1.0 8.01e+04 1.7 0.0e+00 0.0e+00 9.6e+01 0 0 0 0 15 0 0 0 0 16 6 MatGetRowIJ 1 0.0 5.1155e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 8.5138e-03 1.0 0.00e+00 0.0 1.0e+01 4.3e+04 2.8e+01 0 0 0 3 4 0 0 0 3 5 0 MatGetOrdering 1 0.0 1.2486e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.2220e-02 1.0 1.39e+05 1.0 2.4e+02 7.2e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 34 MatZeroEntries 3 1.0 3.8183e-04 3.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.5070e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 1.1382e-02 1.0 1.15e+05 1.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 30 MatTranspose 10 1.0 8.0078e-03 1.2 0.00e+00 0.0 9.0e+01 2.0e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 MatMatMultSym 9 1.0 5.3650e-02 1.1 0.00e+00 0.0 5.1e+01 1.2e+04 2.8e+01 1 0 2 4 4 1 0 2 4 5 0 MatMatMultNum 3 1.0 1.1606e-02 1.0 6.33e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 1587 MatPtAPSymbolic 3 1.0 1.4397e-01 1.0 0.00e+00 0.0 9.9e+01 3.4e+04 2.1e+01 2 0 4 20 3 2 0 4 20 3 0 MatPtAPNumeric 3 1.0 2.2093e-01 1.0 5.56e+07 1.2 3.0e+01 8.8e+04 1.5e+01 2 26 1 16 2 2 26 1 16 2 710 MatGetLocalMat 9 1.0 3.9635e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 4.6454e-03 1.1 0.00e+00 0.0 1.2e+02 3.0e+04 1.0e+00 0 0 5 22 0 0 0 5 22 0 0 VecMDot 20 1.0 1.0747e-03 1.4 1.19e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 3250 VecTDot 40 1.0 1.2962e-03 1.2 8.24e+05 1.1 0.0e+00 0.0e+00 4.0e+01 0 0 0 0 6 0 0 0 0 6 1851 VecNorm 43 1.0 1.5912e-03 1.5 6.72e+05 1.1 0.0e+00 0.0e+00 4.3e+01 0 0 0 0 7 0 0 0 0 7 1231 VecScale 22 1.0 1.0663e-04 1.1 1.19e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3275 VecCopy 130 1.0 7.8737e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 194 1.0 5.8489e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 42 1.0 1.0934e-03 1.2 8.46e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2253 VecAYPX 271 1.0 3.4275e-03 1.1 2.22e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1889 VecAXPBYCZ 84 1.0 1.2475e-03 1.1 2.28e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5345 VecMAXPY 22 1.0 5.8267e-04 1.1 1.41e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 7084 VecAssemblyBegin 57 1.0 8.1096e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 57 1.0 9.9304e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 190 1.0 3.3592e-03 1.1 1.03e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 898 VecScatterBegin 350 1.0 4.4476e-03 1.1 0.00e+00 0.0 1.8e+03 4.1e+03 8.0e+00 0 0 79 45 1 0 0 79 45 1 0 VecScatterEnd 350 1.0 3.7159e-02 3.4 1.36e+04 2.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1 VecNormalize 22 1.0 7.1688e-04 1.4 3.58e+05 1.1 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 1462 SFSetGraph 35 1.0 2.1687e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 17 1.0 9.0289e-04 1.2 0.00e+00 0.0 1.6e+02 4.8e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 SFBcastBegin 15 1.0 1.1016e-04 1.1 0.00e+00 0.0 9.0e+01 6.2e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 SFBcastEnd 15 1.0 1.0978e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 8.4703e-05 1.2 0.00e+00 0.0 1.8e+01 5.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 5.5858e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 369 1.0 1.8638e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 369 1.0 4.1544e-04 1.1 1.36e+04 2.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 65 KSPSetUp 7 1.0 2.7626e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 KSPSolve 1 1.0 1.8663e-01 1.0 1.37e+08 1.1 1.5e+03 4.5e+03 6.7e+01 2 64 64 40 11 2 64 64 40 11 2104 KSPGMRESOrthog 20 1.0 1.6305e-03 1.3 2.39e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 4284 PCSetUp_GAMG+ 1 1.0 4.7779e-01 1.0 7.60e+07 1.1 8.0e+02 1.1e+04 5.0e+02 5 35 35 52 79 5 35 35 52 81 453 PCGAMGCreateG 2 1.0 1.9508e-02 1.0 4.95e+04 1.0 6.0e+01 2.9e+03 4.4e+01 0 0 3 1 7 0 0 3 1 7 8 GAMG Coarsen 2 1.0 1.3140e-02 1.0 1.39e+05 1.0 2.4e+02 7.2e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 31 GAMG MIS/Agg 2 1.0 1.2240e-02 1.0 1.39e+05 1.0 2.4e+02 7.2e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 34 PCGAMGProl 2 1.0 1.5086e-02 1.0 0.00e+00 0.0 1.9e+02 1.7e+03 1.9e+02 0 0 8 2 30 0 0 8 2 31 0 GAMG Prol-col 2 1.0 6.2061e-03 1.0 0.00e+00 0.0 1.8e+02 6.2e+02 1.7e+02 0 0 8 1 27 0 0 8 1 28 0 GAMG Prol-lift 2 1.0 8.6194e-03 1.0 0.00e+00 0.0 1.2e+01 1.7e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 6.1723e-02 1.0 2.03e+07 1.1 1.9e+02 8.3e+03 8.2e+01 1 10 8 10 13 1 10 8 10 13 962 GAMG smooth 2 1.0 4.2817e-02 1.0 6.85e+06 1.1 4.8e+01 2.0e+04 2.6e+01 0 3 2 6 4 0 3 2 6 4 466 PCGAMGCreateL 2 1.0 3.6732e-01 1.0 5.54e+07 1.2 1.2e+02 5.2e+04 7.7e+01 4 25 5 39 12 4 25 5 39 12 426 GAMG PtAP 2 1.0 3.5815e-01 1.0 5.54e+07 1.2 9.6e+01 6.1e+04 2.4e+01 4 25 4 36 4 4 25 4 36 4 437 GAMG Reduce 1 1.0 9.3919e-03 1.0 0.00e+00 0.0 2.5e+01 1.8e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 PCGAMG Gal l00 1 1.0 2.4898e-01 1.0 3.53e+07 1.0 4.8e+01 7.6e+04 1.2e+01 3 17 2 22 2 3 17 2 22 2 417 PCGAMG Opt l00 1 1.0 2.9889e-02 1.0 5.10e+06 1.0 2.4e+01 3.3e+04 1.0e+01 0 2 1 5 2 0 2 1 5 2 502 PCGAMG Gal l01 1 1.0 1.0917e-01 1.0 2.10e+07 1.6 4.8e+01 4.6e+04 1.2e+01 1 9 2 13 2 1 9 2 13 2 483 PCGAMG Opt l01 1 1.0 6.3861e-03 1.0 1.31e+06 1.4 2.4e+01 7.0e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 529 PCSetUp 2 1.0 4.8553e-01 1.0 7.60e+07 1.0 8.0e+02 1.1e+04 5.0e+02 5 36 35 52 79 5 36 35 52 81 461 PCSetUpOnBlocks 21 1.0 7.8282e-03 45.3 7.56e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 966 PCApply 21 1.0 1.6148e-01 1.0 1.17e+08 1.1 1.4e+03 4.1e+03 6.0e+00 2 55 59 34 1 2 55 59 34 1 2081 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 106 106 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 3 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 6.577e-07 Average time for MPI_Barrier(): 4.1984e-06 Average time for zero size MPI_Send(): 2.57033e-06 #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/i386-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-i686-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/12 -L/lib/i386-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong Option left: name:-mg_levels_esteig_ksp_type value: cg 2023-05-08 08:28:18.605 ( 9.407s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson weak scaling (3 processes with ndofs=10000) ==== 2023-05-08 08:28:18.859 ( 0.165s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-08 08:28:18.859 ( 0.165s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-08 08:28:18.859 ( 0.165s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-08 08:28:19.082 ( 0.388s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-08 08:28:19.084 ( 0.390s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:19.084 ( 0.390s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:19.084 ( 0.390s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-08 08:28:19.092 ( 0.398s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) 2023-05-08 08:28:19.092 ( 0.398s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-08 08:28:37.435 ( 18.741s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-08 08:28:37.436 ( 18.741s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-08 08:28:37.447 ( 18.753s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-08 08:28:37.535 ( 18.841s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(166) 3605-52724 2023-05-08 08:28:37.549 ( 18.855s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-08 08:28:37.561 ( 18.867s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-08 08:28:37.561 ( 18.867s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-08 08:28:37.604 ( 18.910s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.604 ( 18.910s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.604 ( 18.910s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.604 ( 18.910s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.611 ( 18.916s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.611 ( 18.917s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.611 ( 18.917s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:37.611 ( 18.917s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:37.612 ( 18.917s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.612 ( 18.918s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.622 ( 18.927s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:37.622 ( 18.928s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:37.622 ( 18.928s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-08 08:28:37.623 ( 18.929s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.623 ( 18.929s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.623 ( 18.929s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2023-05-08 08:28:37.627 ( 18.933s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 UnitCube (30x30x30) to be refined 0 times 2023-05-08 08:28:37.652 ( 18.958s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.654 ( 18.960s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.723 ( 19.029s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.723 ( 19.029s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.729 ( 19.035s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:37.729 ( 19.035s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-08 08:28:37.732 ( 19.038s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-08 08:28:37.738 ( 19.044s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.738 ( 19.044s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.738 ( 19.044s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.739 ( 19.044s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.739 ( 19.044s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:37.739 ( 19.045s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:37.739 ( 19.045s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.739 ( 19.045s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.740 ( 19.046s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-08 08:28:37.741 ( 19.047s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-08 08:28:37.741 ( 19.047s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-08 08:28:37.742 ( 19.048s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:37.806 ( 19.112s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:37.806 ( 19.112s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 2023-05-08 08:28:37.806 ( 19.112s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:37.810 ( 19.116s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:37.843 ( 19.149s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 437 to 1226 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2023-05-08 08:28:37.935 ( 19.241s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type cusparse linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 18.779403 18.779403 Build dofmap data | 2 0.008301 0.016603 Build sparsity | 1 0.012071 0.012071 Compute connectivity 2-3 | 1 0.002220 0.002220 Compute dof reordering map | 2 0.000560 0.001119 Compute entities of dim = 2 | 1 0.101889 0.101889 Compute graph partition (SCOTCH) | 1 18.327624 18.327624 Compute local part of mesh dual graph | 2 0.154198 0.308396 Compute local-to-local map | 1 0.001899 0.001899 Compute non-local part of mesh dual graph | 1 0.145562 0.145562 Compute-local-to-global links for global/local adjacency list | 1 0.001073 0.001073 Distribute AdjacencyList nodes to destination ranks | 1 0.036068 0.036068 Distribute row-wise data (scalable) | 1 0.002285 0.002285 Extract partition boundaries from SCOTCH graph | 1 0.001622 0.001622 GPS: create_level_structure | 2 0.001297 0.006115 Get SCOTCH graph data | 1 0.000009 0.000009 Gibbs-Poole-Stockmeyer ordering | 1 0.013130 0.013130 Init MPI | 1 0.152345 0.152345 Init PETSc | 1 0.001072 0.001072 Init dofmap from element dofmap | 2 0.005896 0.011792 Init logging | 1 0.000040 0.000040 PETSc Krylov solver | 1 0.354646 0.354646 SCOTCH: call SCOTCH_dgraphBuild | 1 0.003078 0.003078 SCOTCH: call SCOTCH_dgraphHalo | 1 0.035724 0.035724 SCOTCH: call SCOTCH_dgraphPart | 1 18.286080 18.286080 SparsityPattern::assemble | 1 0.023790 0.023790 Topology: create | 1 0.056062 0.056062 Topology: determine shared index ownership | 1 0.003236 0.003236 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.011874 0.011874 ZZZ Assemble | 1 0.192294 0.192294 ZZZ Assemble matrix | 1 0.070825 0.070825 ZZZ Assemble vector | 1 0.012937 0.012937 ZZZ Create Mesh | 1 18.779563 18.779563 ZZZ Create RHS function | 1 0.066722 0.066722 ZZZ Create boundary conditions | 1 0.002994 0.002994 ZZZ Create facets and facet->cell connectivity | 1 0.104276 0.104276 ZZZ FunctionSpace | 1 0.009097 0.009097 ZZZ Solve | 1 0.357225 0.357225 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Mon May 8 08:28:38 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 1.945e+01 1.000 1.945e+01 Objects: 3.200e+01 1.000 3.200e+01 Flops: 3.514e+06 1.031 3.449e+06 1.035e+07 Flops/sec: 1.807e+05 1.031 1.774e+05 5.322e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 MPI Msg Len (bytes): 1.877e+05 1.208 6.238e+03 5.240e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.9445e+01 100.0% 1.0348e+07 100.0% 8.400e+01 100.0% 6.238e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 2.6049e-03 14.2 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 BuildTwoSidedF 2 1.0 2.5994e-03 33.2 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatMult 7 1.0 3.9915e-03 1.0 1.95e+06 1.0 5.4e+01 4.6e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 1436 MatConvert 1 1.0 3.7285e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 3 1.0 4.7958e-03 1.9 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatAssemblyEnd 3 1.0 4.0514e-03 1.0 3.56e+03 1.2 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 9 0 0 0 0 12 3 MatGetRowIJ 2 1.0 2.5230e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 4.6267e-04 3.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 14 1.0 4.0883e-04 1.3 2.83e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 2040 VecNorm 8 1.0 5.6436e-04 1.8 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 845 VecCopy 2 1.0 6.2746e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 9.0833e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 2.7737e-04 1.2 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 3007 VecAYPX 6 1.0 1.6400e-04 1.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 2180 VecScatterBegin 8 1.0 4.3474e-04 1.1 0.00e+00 0.0 7.2e+01 3.7e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 VecScatterEnd 8 1.0 6.0373e-04 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 6.3138e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 2 1.0 2.5469e-04 1.6 0.00e+00 0.0 2.4e+01 9.5e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 SFPack 8 1.0 7.1987e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 8 1.0 3.3911e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 6.4982e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.3004e-01 1.0 2.80e+06 1.0 5.4e+01 4.6e+03 2.3e+01 1 80 64 47 34 1 80 64 47 47 63 PCSetUp 1 1.0 2.2385e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 1.2476e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 2 1 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 6.585e-07 Average time for MPI_Barrier(): 3.1814e-06 Average time for zero size MPI_Send(): 3.334e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/i386-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-i686-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/12 -L/lib/i386-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak 2023-05-08 08:28:38.353 ( 19.659s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson strong scaling (3 processes with ndofs=30000) ==== 2023-05-08 08:28:38.608 ( 0.165s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-08 08:28:38.608 ( 0.165s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-08 08:28:38.608 ( 0.165s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-08 08:28:38.699 ( 0.256s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-08 08:28:38.699 ( 0.257s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:38.699 ( 0.257s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:38.700 ( 0.257s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-08 08:28:38.704 ( 0.261s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) 2023-05-08 08:28:38.704 ( 0.261s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-08 08:28:53.314 ( 14.871s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-08 08:28:53.318 ( 14.875s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-08 08:28:53.351 ( 14.908s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-08 08:28:53.439 ( 14.996s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(173) 143-52515 2023-05-08 08:28:53.452 ( 15.009s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-08 08:28:53.489 ( 15.046s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-08 08:28:53.489 ( 15.046s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-08 08:28:53.530 ( 15.087s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.530 ( 15.087s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.530 ( 15.087s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.530 ( 15.087s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.537 ( 15.094s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.537 ( 15.094s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.537 ( 15.095s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:53.537 ( 15.095s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:53.538 ( 15.095s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.538 ( 15.095s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.548 ( 15.105s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:53.548 ( 15.105s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:53.548 ( 15.105s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-08 08:28:53.549 ( 15.106s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.549 ( 15.106s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.549 ( 15.106s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (30x30x30) to be refined 0 times 2023-05-08 08:28:53.553 ( 15.111s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2023-05-08 08:28:53.579 ( 15.136s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.580 ( 15.138s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.653 ( 15.210s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.653 ( 15.211s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.660 ( 15.217s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:53.660 ( 15.217s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-08 08:28:53.663 ( 15.220s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-08 08:28:53.669 ( 15.226s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.669 ( 15.226s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.669 ( 15.226s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.669 ( 15.227s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.669 ( 15.227s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-08 08:28:53.670 ( 15.227s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-08 08:28:53.670 ( 15.227s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.670 ( 15.227s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.671 ( 15.228s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-08 08:28:53.672 ( 15.229s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-08 08:28:53.672 ( 15.230s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-08 08:28:53.673 ( 15.230s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:53.736 ( 15.293s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-08 08:28:53.736 ( 15.293s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 2023-05-08 08:28:53.736 ( 15.293s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-08 08:28:53.737 ( 15.294s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-08 08:28:53.770 ( 15.327s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 472 to 1306 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2023-05-08 08:28:53.863 ( 15.420s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type cusparse linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 14.952858 14.952858 Build dofmap data | 2 0.008475 0.016950 Build sparsity | 1 0.012153 0.012153 Compute connectivity 2-3 | 1 0.002082 0.002082 Compute dof reordering map | 2 0.000545 0.001090 Compute entities of dim = 2 | 1 0.106327 0.106327 Compute graph partition (SCOTCH) | 1 14.585382 14.585382 Compute local part of mesh dual graph | 2 0.093712 0.187424 Compute local-to-local map | 1 0.001884 0.001884 Compute non-local part of mesh dual graph | 1 0.008869 0.008869 Compute-local-to-global links for global/local adjacency list | 1 0.001281 0.001281 Distribute AdjacencyList nodes to destination ranks | 1 0.076939 0.076939 Distribute row-wise data (scalable) | 1 0.002109 0.002109 Extract partition boundaries from SCOTCH graph | 1 0.001550 0.001550 GPS: create_level_structure | 2 0.001287 0.004676 Get SCOTCH graph data | 1 0.000008 0.000008 Gibbs-Poole-Stockmeyer ordering | 1 0.011675 0.011675 Init MPI | 1 0.156636 0.156636 Init PETSc | 1 0.000990 0.000990 Init dofmap from element dofmap | 2 0.005864 0.011728 Init logging | 1 0.000046 0.000046 PETSc Krylov solver | 1 0.310929 0.310929 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000382 0.000382 SCOTCH: call SCOTCH_dgraphHalo | 1 0.035635 0.035635 SCOTCH: call SCOTCH_dgraphPart | 1 14.548058 14.548058 SparsityPattern::assemble | 1 0.025291 0.025291 Topology: create | 1 0.078814 0.078814 Topology: determine shared index ownership | 1 0.028842 0.028842 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.008928 0.008928 ZZZ Assemble | 1 0.189425 0.189425 ZZZ Assemble matrix | 1 0.070701 0.070701 ZZZ Assemble vector | 1 0.012867 0.012867 ZZZ Create Mesh | 1 14.953036 14.953036 ZZZ Create RHS function | 1 0.062369 0.062369 ZZZ Create boundary conditions | 1 0.003120 0.003120 ZZZ Create facets and facet->cell connectivity | 1 0.108621 0.108621 ZZZ FunctionSpace | 1 0.009361 0.009361 ZZZ Solve | 1 0.313592 0.313592 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Mon May 8 08:28:54 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 1.558e+01 1.000 1.558e+01 Objects: 3.200e+01 1.000 3.200e+01 Flops: 3.490e+06 1.022 3.449e+06 1.035e+07 Flops/sec: 2.241e+05 1.022 2.214e+05 6.642e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 MPI Msg Len (bytes): 1.963e+05 1.193 6.522e+03 5.478e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.5575e+01 100.0% 1.0346e+07 100.0% 8.400e+01 100.0% 6.522e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 2.5042e-03 22.0 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 BuildTwoSidedF 2 1.0 2.4927e-03 36.6 0.00e+00 0.0 1.2e+01 2.3e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatMult 7 1.0 4.4317e-03 1.0 1.93e+06 1.0 5.4e+01 4.8e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 1293 MatConvert 1 1.0 3.7048e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 3 1.0 4.7172e-03 1.7 0.00e+00 0.0 1.2e+01 2.3e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatAssemblyEnd 3 1.0 4.2466e-03 1.1 3.95e+03 1.2 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 9 0 0 0 0 12 3 MatGetRowIJ 2 1.0 4.6130e-06 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 4.1442e-04 5.8 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 14 1.0 3.7342e-04 1.2 2.81e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 2234 VecNorm 8 1.0 1.1125e-03 3.9 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 428 VecCopy 2 1.0 7.1064e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 8.9846e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 2.9985e-04 1.2 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2782 VecAYPX 6 1.0 1.6839e-04 1.3 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 2123 VecScatterBegin 8 1.0 4.0046e-04 1.1 0.00e+00 0.0 7.2e+01 3.9e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 VecScatterEnd 8 1.0 6.4982e-04 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 6.3428e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 2 1.0 1.9974e-04 1.2 0.00e+00 0.0 2.4e+01 9.9e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 SFPack 8 1.0 7.4008e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 8 1.0 1.6397e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 7.3596e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.1827e-01 1.0 2.78e+06 1.0 5.4e+01 4.8e+03 2.3e+01 1 80 64 47 34 1 80 64 47 47 70 PCSetUp 1 1.0 1.9197e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 1.1250e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 2 1 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 6.657e-07 Average time for MPI_Barrier(): 3.1428e-06 Average time for zero size MPI_Send(): 4.26167e-06 #PETSc Option Table entries: --ndofs 30000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/i386-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-i686-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-iWPVuY/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/12 -L/lib/i386-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong 2023-05-08 08:28:54.233 ( 15.790s) [RANK: 0 ] loguru.cpp:526 INFO| atexit make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-i686-linux-gnu && make -j7 install DESTDIR=/build/fenicsx-performance-tests-0.5.0\~git20220731.821823b/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_i386.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_i386.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_i386.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/6926/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/6926/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6926 and its subdirectories I: Current time: Mon May 8 08:29:05 +14 2023 I: pbuilder-time-stamp: 1683484145