I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 18 21:45:28 -12 2024 I: pbuilder-time-stamp: 1705657528 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [golang-github-biogo-biogo_1.0.4-1.dsc] I: copying [./golang-github-biogo-biogo_1.0.4.orig.tar.gz] I: copying [./golang-github-biogo-biogo_1.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Oct 29 21:25:39 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./golang-github-biogo-biogo_1.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting golang-github-biogo-biogo in golang-github-biogo-biogo-1.0.4 dpkg-source: info: unpacking golang-github-biogo-biogo_1.0.4.orig.tar.gz dpkg-source: info: unpacking golang-github-biogo-biogo_1.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2915/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='bd34f56ea01a4f7d9ce8d05a43a18521' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2915' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.shgtxaAi/pbuilderrc_e2Jw --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.shgtxaAi/b1 --logfile b1/build.log golang-github-biogo-biogo_1.0.4-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 23 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 23 2023 more -rwsr-xr-x 1 root root 58912 Mar 23 2023 mount -rwxr-xr-x 1 root root 13856 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 23 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 23 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/2915/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-hts-dev, golang-github-biogo-graph-dev, golang-github-biogo-store-dev, golang-gopkg-check.v1-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-golang; however: Package dh-golang is not installed. pbuilder-satisfydepends-dummy depends on golang-any; however: Package golang-any is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however: Package golang-github-biogo-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-graph-dev; however: Package golang-github-biogo-graph-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-store-dev; however: Package golang-github-biogo-store-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-gopkg-check.v1-dev; however: Package golang-gopkg-check.v1-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.19-go{a} golang-1.19-src{a} golang-any{a} golang-github-biogo-graph-dev{a} golang-github-biogo-hts-dev{a} golang-github-biogo-store-dev{a} golang-github-creack-pty-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-pkg-diff-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-ulikunitz-xz-dev{a} golang-go{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx pkg-config pkgconf wget 0 packages upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 99.6 MB of archives. After unpacking 519 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.3~deb12u1 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 dh-golang all 1.59 [27.8 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 golang-1.19-src all 1.19.8-2 [18.3 MB] Get: 33 http://deb.debian.org/debian bookworm/main i386 golang-1.19-go i386 1.19.8-2 [61.2 MB] Get: 34 http://deb.debian.org/debian bookworm/main i386 golang-src all 2:1.19~1 [5756 B] Get: 35 http://deb.debian.org/debian bookworm/main i386 golang-go i386 2:1.19~1 [45.0 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 golang-any i386 2:1.19~1 [5872 B] Get: 37 http://deb.debian.org/debian bookworm/main i386 golang-github-creack-pty-dev all 1.1.18-1 [9796 B] Get: 38 http://deb.debian.org/debian bookworm/main i386 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 golang-github-pkg-diff-dev all 0.0~git20210226.20ebb0f-1 [93.6 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 golang-github-rogpeppe-go-internal-dev all 1.9.0-1 [117 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 golang-github-kr-pretty-dev all 0.3.0-1 [14.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 golang-github-biogo-graph-dev all 0.0~git20150317.057c198-3 [12.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 golang-github-biogo-store-dev all 0.0~git20200525.8c94ae1-2 [34.3 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB] Fetched 99.6 MB in 6s (16.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3~deb12u1_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package dh-golang. Preparing to unpack .../30-dh-golang_1.59_all.deb ... Unpacking dh-golang (1.59) ... Selecting previously unselected package golang-1.19-src. Preparing to unpack .../31-golang-1.19-src_1.19.8-2_all.deb ... Unpacking golang-1.19-src (1.19.8-2) ... Selecting previously unselected package golang-1.19-go. Preparing to unpack .../32-golang-1.19-go_1.19.8-2_i386.deb ... Unpacking golang-1.19-go (1.19.8-2) ... Selecting previously unselected package golang-src. Preparing to unpack .../33-golang-src_2%3a1.19~1_all.deb ... Unpacking golang-src (2:1.19~1) ... Selecting previously unselected package golang-go:i386. Preparing to unpack .../34-golang-go_2%3a1.19~1_i386.deb ... Unpacking golang-go:i386 (2:1.19~1) ... Selecting previously unselected package golang-any:i386. Preparing to unpack .../35-golang-any_2%3a1.19~1_i386.deb ... Unpacking golang-any:i386 (2:1.19~1) ... Selecting previously unselected package golang-github-creack-pty-dev. Preparing to unpack .../36-golang-github-creack-pty-dev_1.1.18-1_all.deb ... Unpacking golang-github-creack-pty-dev (1.1.18-1) ... Selecting previously unselected package golang-github-kr-text-dev. Preparing to unpack .../37-golang-github-kr-text-dev_0.2.0-2_all.deb ... Unpacking golang-github-kr-text-dev (0.2.0-2) ... Selecting previously unselected package golang-github-pkg-diff-dev. Preparing to unpack .../38-golang-github-pkg-diff-dev_0.0~git20210226.20ebb0f-1_all.deb ... Unpacking golang-github-pkg-diff-dev (0.0~git20210226.20ebb0f-1) ... Selecting previously unselected package golang-github-rogpeppe-go-internal-dev. Preparing to unpack .../39-golang-github-rogpeppe-go-internal-dev_1.9.0-1_all.deb ... Unpacking golang-github-rogpeppe-go-internal-dev (1.9.0-1) ... Selecting previously unselected package golang-github-kr-pretty-dev. Preparing to unpack .../40-golang-github-kr-pretty-dev_0.3.0-1_all.deb ... Unpacking golang-github-kr-pretty-dev (0.3.0-1) ... Selecting previously unselected package golang-gopkg-check.v1-dev. Preparing to unpack .../41-golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1_all.deb ... Unpacking golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Selecting previously unselected package golang-github-biogo-graph-dev. Preparing to unpack .../42-golang-github-biogo-graph-dev_0.0~git20150317.057c198-3_all.deb ... Unpacking golang-github-biogo-graph-dev (0.0~git20150317.057c198-3) ... Selecting previously unselected package golang-github-biogo-store-dev. Preparing to unpack .../43-golang-github-biogo-store-dev_0.0~git20200525.8c94ae1-2_all.deb ... Unpacking golang-github-biogo-store-dev (0.0~git20200525.8c94ae1-2) ... Selecting previously unselected package golang-github-ulikunitz-xz-dev. Preparing to unpack .../44-golang-github-ulikunitz-xz-dev_0.5.6-2_all.deb ... Unpacking golang-github-ulikunitz-xz-dev (0.5.6-2) ... Selecting previously unselected package golang-github-biogo-hts-dev. Preparing to unpack .../45-golang-github-biogo-hts-dev_1.4.4+dfsg1-1_all.deb ... Unpacking golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up golang-github-creack-pty-dev (1.1.18-1) ... Setting up golang-github-pkg-diff-dev (0.0~git20210226.20ebb0f-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up golang-1.19-src (1.19.8-2) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up golang-github-kr-text-dev (0.2.0-2) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up golang-github-rogpeppe-go-internal-dev (1.9.0-1) ... Setting up golang-src (2:1.19~1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Setting up golang-github-ulikunitz-xz-dev (0.5.6-2) ... Setting up golang-1.19-go (1.19.8-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up golang-github-kr-pretty-dev (0.3.0-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up golang-go:i386 (2:1.19~1) ... Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Setting up golang-any:i386 (2:1.19~1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up golang-github-biogo-graph-dev (0.0~git20150317.057c198-3) ... Setting up golang-github-biogo-store-dev (0.0~git20200525.8c94ae1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Setting up dh-golang (1.59) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/golang-github-biogo-biogo-1.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-biogo-biogo_1.0.4-1_source.changes dpkg-buildpackage: info: source package golang-github-biogo-biogo dpkg-buildpackage: info: source version 1.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --builddirectory=_build --buildsystem=golang --with=golang dh_auto_clean -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang dh_clean -O--builddirectory=_build -O--buildsystem=golang debian/rules binary dh binary --builddirectory=_build --buildsystem=golang --with=golang dh_update_autotools_config -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang cd _build && go install -trimpath -v -p 8 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util github.com/biogo/biogo internal/goarch internal/unsafeheader internal/goos internal/goexperiment internal/itoa runtime/internal/syscall math/bits unicode/utf8 internal/cpu internal/race runtime/internal/atomic internal/abi runtime/internal/math runtime/internal/sys math sync/atomic unicode encoding github.com/biogo/store/llrb image/color internal/bytealg runtime internal/reflectlite sync math/rand internal/testlog sort errors path io internal/safefilepath internal/oserror github.com/biogo/store/interval strconv syscall container/heap strings hash text/tabwriter bytes hash/adler32 reflect github.com/biogo/biogo/feat bufio github.com/biogo/biogo/io/featio github.com/biogo/biogo/feat/gene internal/syscall/execenv internal/syscall/unix time io/fs internal/poll internal/fmtsort encoding/binary os io/ioutil fmt github.com/biogo/biogo/util github.com/biogo/biogo/alphabet encoding/csv compress/flate log encoding/gob github.com/biogo/biogo/errors github.com/biogo/graph github.com/biogo/biogo/concurrent github.com/biogo/hts/fai github.com/biogo/biogo/seq github.com/biogo/biogo/align/matrix github.com/biogo/biogo/io/seqio/fai compress/zlib github.com/biogo/biogo/seq/linear github.com/biogo/biogo/io/seqio github.com/biogo/biogo/feat/genome github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/align github.com/biogo/biogo/complexity github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/seq/multi github.com/biogo/biogo/pwm github.com/biogo/biogo/morass github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/quality github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals dh_auto_test -O--builddirectory=_build -O--buildsystem=golang cd _build && go test -vet=off -v -p 8 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util ? github.com/biogo/biogo [no test files] === RUN Test OK: 2 passed --- PASS: Test (0.02s) === RUN ExampleFitted_Align --- PASS: ExampleFitted_Align (0.00s) === RUN ExampleFittedAffine_Align --- PASS: ExampleFittedAffine_Align (0.00s) === RUN ExampleNW_Align --- PASS: ExampleNW_Align (0.00s) === RUN ExampleNWAffine_Align --- PASS: ExampleNWAffine_Align (0.00s) === RUN ExampleSW_Align_a --- PASS: ExampleSW_Align_a (0.00s) === RUN ExampleSW_Align_b --- PASS: ExampleSW_Align_b (0.00s) === RUN ExampleSWAffine_Align --- PASS: ExampleSWAffine_Align (0.00s) PASS ok github.com/biogo/biogo/align 0.067s ? github.com/biogo/biogo/align/matrix [no test files] === RUN Test OK: 5 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/align/pals 0.028s === RUN Test OK: 1 passed --- PASS: Test (0.02s) PASS ok github.com/biogo/biogo/align/pals/dp 0.120s === RUN Test OK: 1 passed --- PASS: Test (0.08s) PASS ok github.com/biogo/biogo/align/pals/filter 0.153s === RUN Test OK: 10 passed --- PASS: Test (0.09s) === RUN Example_allValid --- PASS: Example_allValid (0.00s) === RUN Example_complement --- PASS: Example_complement (0.00s) PASS ok github.com/biogo/biogo/alphabet 0.162s === RUN Test OK: 4 passed --- PASS: Test (12.09s) PASS ok github.com/biogo/biogo/complexity 12.253s === RUN Test OK: 1 passed --- PASS: Test (0.02s) === RUN ExampleMap --- PASS: ExampleMap (0.00s) === RUN ExamplePromiseMap --- PASS: ExamplePromiseMap (1.04s) === RUN ExampleLazily --- PASS: ExampleLazily (0.00s) PASS ok github.com/biogo/biogo/concurrent 1.101s === RUN Test OK: 3 passed, 1 skipped --- PASS: Test (0.03s) PASS ok github.com/biogo/biogo/errors 0.058s === RUN Test OK: 6 passed --- PASS: Test (0.06s) PASS ok github.com/biogo/biogo/feat 0.102s === RUN Test OK: 4 passed --- PASS: Test (0.04s) PASS ok github.com/biogo/biogo/feat/gene 0.070s ? github.com/biogo/biogo/feat/genome [no test files] ? github.com/biogo/biogo/feat/genome/cow/bt7 [no test files] ? github.com/biogo/biogo/feat/genome/drosophila/dm3 [no test files] ? github.com/biogo/biogo/feat/genome/human/hg19 [no test files] ? github.com/biogo/biogo/feat/genome/mouse/mm10 [no test files] === RUN Test runtime: out of memory: cannot allocate 1077936128-byte block (1455030272 in use) fatal error: out of memory goroutine 20 [running]: runtime.throw({0x8260bd0, 0xd}) /usr/lib/go-1.19/src/runtime/panic.go:1047 +0x4d fp=0x8c68b24 sp=0x8c68b10 pc=0x8081d3d runtime.(*mcache).allocLarge(0xb7fb92e0, 0x40000004, 0x1) /usr/lib/go-1.19/src/runtime/mcache.go:235 +0x208 fp=0x8c68b4c sp=0x8c68b24 pc=0x805c408 runtime.mallocgc(0x40000004, 0x82331a0, 0x1) /usr/lib/go-1.19/src/runtime/malloc.go:1029 +0x458 fp=0x8c68b94 sp=0x8c68b4c pc=0x8053f78 runtime.makeslice(0x82331a0, 0x10000001, 0x10000001) /usr/lib/go-1.19/src/runtime/slice.go:103 +0x4f fp=0x8c68ba8 sp=0x8c68b94 pc=0x8099caf github.com/biogo/biogo/index/kmerindex.New(0xe, 0x8c5f580) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex.go:71 +0x93 fp=0x8c68bd0 sp=0x8c68ba8 pc=0x8212fb3 github.com/biogo/biogo/index/kmerindex.(*S).TestKmerIndexCheck(0x8c122c8, 0x8c02000) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex_test.go:43 +0x4a fp=0x8c68c3c sp=0x8c68bd0 pc=0x8213e3a runtime.call16(0x8c709c0, 0x8ce80a8, 0x8c12ab8, 0x8, 0x8, 0x8, 0x8c68cbc) /usr/lib/go-1.19/src/runtime/asm_386.s:540 +0x30 fp=0x8c68c50 sp=0x8c68c3c pc=0x80b5510 reflect.Value.call({0x8258860, 0x8c122c8, 0x8213}, {0x825e4c6, 0x4}, {0x8c68f8c, 0x1, 0x1}) /usr/lib/go-1.19/src/reflect/value.go:584 +0x678 fp=0x8c68ee8 sp=0x8c68c50 pc=0x8112198 reflect.Value.Call({0x8258860, 0x8c122c8, 0x8213}, {0x8ff8f8c, 0x1, 0x1}) /usr/lib/go-1.19/src/reflect/value.go:368 +0x7e fp=0x8c68f24 sp=0x8c68ee8 pc=0x811197e gopkg.in/check%2ev1.(*suiteRunner).forkTest.func1(0x8c02000) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:781 +0x66e fp=0x8c68fbc sp=0x8c68f24 pc=0x8208b4e gopkg.in/check%2ev1.(*suiteRunner).forkCall.func1() /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:675 +0xa8 fp=0x8c68ff0 sp=0x8c68fbc pc=0x8207cb8 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c68ff4 sp=0x8c68ff0 pc=0x80b6601 created by gopkg.in/check%2ev1.(*suiteRunner).forkCall /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:672 +0x239 goroutine 1 [chan receive]: runtime.gopark(0x826e738, 0x8c20330, 0xe, 0x17, 0x2) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x941fcd4 sp=0x941fcc0 pc=0x8084dd8 runtime.chanrecv(0x8c20300, 0x8c51d53, 0x1) /usr/lib/go-1.19/src/runtime/chan.go:583 +0x3f2 fp=0x941fd1c sp=0x941fcd4 pc=0x804de22 runtime.chanrecv1(0x8c20300, 0x8c51d53) /usr/lib/go-1.19/src/runtime/chan.go:442 +0x1c fp=0x941fd30 sp=0x941fd1c pc=0x804d9fc testing.(*T).Run(0x8c06b40, {0x825e52a, 0x4}, 0x826e598) /usr/lib/go-1.19/src/testing/testing.go:1494 +0x393 fp=0x941fd7c sp=0x941fd30 pc=0x8146403 testing.runTests.func1(0x8c06b40) /usr/lib/go-1.19/src/testing/testing.go:1846 +0x5e fp=0x941fda0 sp=0x941fd7c pc=0x814825e testing.tRunner(0x8c06b40, 0x8c51e38) /usr/lib/go-1.19/src/testing/testing.go:1446 +0x113 fp=0x941fde8 sp=0x941fda0 pc=0x8145683 testing.runTests(0x8c10060, {0x83dd4e0, 0x1, 0x1}, {0xc162afc08f8ab298, 0x8bb3ef02ca, 0x83e2280}) /usr/lib/go-1.19/src/testing/testing.go:1844 +0x3a6 fp=0x941fe4c sp=0x941fde8 pc=0x8148146 testing.(*M).Run(0x8c000a0) /usr/lib/go-1.19/src/testing/testing.go:1726 +0x680 fp=0x941ff88 sp=0x941fe4c pc=0x8146ce0 main.main() _testmain.go:47 +0x185 fp=0x941ffc4 sp=0x941ff88 pc=0x82176c5 runtime.main() /usr/lib/go-1.19/src/runtime/proc.go:250 +0x24d fp=0x941fff0 sp=0x941ffc4 pc=0x80849dd runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x941fff4 sp=0x941fff0 pc=0x80b6601 goroutine 2 [force gc (idle)]: runtime.gopark(0x826e814, 0x83e2000, 0x11, 0x14, 0x1) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c40fdc sp=0x8c40fc8 pc=0x8084dd8 runtime.goparkunlock(...) /usr/lib/go-1.19/src/runtime/proc.go:369 runtime.forcegchelper() /usr/lib/go-1.19/src/runtime/proc.go:302 +0xc3 fp=0x8c40ff0 sp=0x8c40fdc pc=0x8084c53 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c40ff4 sp=0x8c40ff0 pc=0x80b6601 created by runtime.init.5 /usr/lib/go-1.19/src/runtime/proc.go:290 +0x23 goroutine 3 [GC sweep wait]: runtime.gopark(0x826e814, 0x83e2200, 0xc, 0x14, 0x1) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c417d4 sp=0x8c417c0 pc=0x8084dd8 runtime.goparkunlock(...) /usr/lib/go-1.19/src/runtime/proc.go:369 runtime.bgsweep(0x8c20040) /usr/lib/go-1.19/src/runtime/mgcsweep.go:297 +0xf3 fp=0x8c417e8 sp=0x8c417d4 pc=0x806d9c3 runtime.gcenable.func1() /usr/lib/go-1.19/src/runtime/mgc.go:178 +0x27 fp=0x8c417f0 sp=0x8c417e8 pc=0x805eaa7 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c417f4 sp=0x8c417f0 pc=0x80b6601 created by runtime.gcenable /usr/lib/go-1.19/src/runtime/mgc.go:178 +0x7c goroutine 4 [GC scavenge wait]: runtime.gopark(0x826e814, 0x83e23a0, 0xd, 0x14, 0x2) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c41fb8 sp=0x8c41fa4 pc=0x8084dd8 runtime.goparkunlock(...) /usr/lib/go-1.19/src/runtime/proc.go:369 runtime.(*scavengerState).park(0x83e23a0) /usr/lib/go-1.19/src/runtime/mgcscavenge.go:389 +0x5f fp=0x8c41fcc sp=0x8c41fb8 pc=0x806b30f runtime.bgscavenge(0x8c20040) /usr/lib/go-1.19/src/runtime/mgcscavenge.go:622 +0x77 fp=0x8c41fe8 sp=0x8c41fcc pc=0x806bb27 runtime.gcenable.func2() /usr/lib/go-1.19/src/runtime/mgc.go:179 +0x27 fp=0x8c41ff0 sp=0x8c41fe8 pc=0x805ea67 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c41ff4 sp=0x8c41ff0 pc=0x80b6601 created by runtime.gcenable /usr/lib/go-1.19/src/runtime/mgc.go:179 +0xc1 goroutine 5 [finalizer wait]: runtime.gopark(0x826e814, 0x83f586c, 0x10, 0x14, 0x1) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c40790 sp=0x8c4077c pc=0x8084dd8 runtime.goparkunlock(...) /usr/lib/go-1.19/src/runtime/proc.go:369 runtime.runfinq() /usr/lib/go-1.19/src/runtime/mfinal.go:180 +0xfb fp=0x8c407f0 sp=0x8c40790 pc=0x805dcfb runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c407f4 sp=0x8c407f0 pc=0x80b6601 created by runtime.createfing /usr/lib/go-1.19/src/runtime/mfinal.go:157 +0x54 goroutine 6 [chan receive]: runtime.gopark(0x826e738, 0x8c5e370, 0xe, 0x17, 0x2) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c6ce2c sp=0x8c6ce18 pc=0x8084dd8 runtime.chanrecv(0x8c5e340, 0x0, 0x1) /usr/lib/go-1.19/src/runtime/chan.go:583 +0x3f2 fp=0x8c6ce74 sp=0x8c6ce2c pc=0x804de22 runtime.chanrecv1(0x8c5e340, 0x0) /usr/lib/go-1.19/src/runtime/chan.go:442 +0x1c fp=0x8c6ce88 sp=0x8c6ce74 pc=0x804d9fc gopkg.in/check%2ev1.(*suiteRunner).runTest(...) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:819 gopkg.in/check%2ev1.(*suiteRunner).run(0x8c00140) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:624 +0x242 fp=0x8c6ceb0 sp=0x8c6ce88 pc=0x8207932 gopkg.in/check%2ev1.Run({0x8258860, 0x8c122c8}, 0x8c4276c) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:92 +0x3d fp=0x8c6cec4 sp=0x8c6ceb0 pc=0x820d1fd gopkg.in/check%2ev1.RunAll(0x8c6cf6c) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:84 +0x80 fp=0x8c6cf00 sp=0x8c6cec4 pc=0x820d0d0 gopkg.in/check%2ev1.TestingT(0x8c06c30) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:72 +0x26f fp=0x8c6cf94 sp=0x8c6cf00 pc=0x820ce1f github.com/biogo/biogo/index/kmerindex.Test(0x8c06c30) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex_test.go:20 +0x21 fp=0x8c6cf9c sp=0x8c6cf94 pc=0x8213c41 testing.tRunner(0x8c06c30, 0x826e598) /usr/lib/go-1.19/src/testing/testing.go:1446 +0x113 fp=0x8c6cfe4 sp=0x8c6cf9c pc=0x8145683 testing.(*T).Run.func1() /usr/lib/go-1.19/src/testing/testing.go:1493 +0x2e fp=0x8c6cff0 sp=0x8c6cfe4 pc=0x814647e runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c6cff4 sp=0x8c6cff0 pc=0x80b6601 created by testing.(*T).Run /usr/lib/go-1.19/src/testing/testing.go:1493 +0x374 goroutine 7 [select]: runtime.gopark(0x826e840, 0x0, 0x9, 0x18, 0x1) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c42688 sp=0x8c42674 pc=0x8084dd8 runtime.selectgo(0x8c427bc, 0x8c427a0, 0x0, 0x0, 0x2, 0x1) /usr/lib/go-1.19/src/runtime/select.go:328 +0xbe8 fp=0x8c4277c sp=0x8c42688 pc=0x8095918 gopkg.in/check%2ev1.(*resultTracker)._loopRoutine(0x8c000f0) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:470 +0x97 fp=0x8c427e8 sp=0x8c4277c pc=0x8206d27 gopkg.in/check%2ev1.(*resultTracker).start.func1() /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:450 +0x27 fp=0x8c427f0 sp=0x8c427e8 pc=0x8206c77 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c427f4 sp=0x8c427f0 pc=0x80b6601 created by gopkg.in/check%2ev1.(*resultTracker).start /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:450 +0x5a goroutine 10 [GC worker (idle)]: runtime.gopark(0x826e768, 0x8c1e390, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c3df94 sp=0x8c3df80 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8c3dff0 sp=0x8c3df94 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c3dff4 sp=0x8c3dff0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 17 [GC worker (idle)]: runtime.gopark(0x826e768, 0x8c1e3a8, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c3d794 sp=0x8c3d780 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8c3d7f0 sp=0x8c3d794 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c3d7f4 sp=0x8c3d7f0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 11 [GC worker (idle)]: runtime.gopark(0x826e768, 0x8ffc000, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8ff9794 sp=0x8ff9780 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8ff97f0 sp=0x8ff9794 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8ff97f4 sp=0x8ff97f0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 12 [GC worker (idle)]: runtime.gopark(0x826e768, 0x9480000, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8ff9f94 sp=0x8ff9f80 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8ff9ff0 sp=0x8ff9f94 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8ff9ff4 sp=0x8ff9ff0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 33 [GC worker (idle)]: runtime.gopark(0x826e768, 0x8c1e3c0, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8ff5794 sp=0x8ff5780 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8ff57f0 sp=0x8ff5794 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8ff57f4 sp=0x8ff57f0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 13 [GC worker (idle)]: runtime.gopark(0x826e768, 0x8ffc018, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8ffa794 sp=0x8ffa780 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8ffa7f0 sp=0x8ffa794 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8ffa7f4 sp=0x8ffa7f0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 34 [GC worker (idle)]: runtime.gopark(0x826e768, 0x9480018, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8ff5f94 sp=0x8ff5f80 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8ff5ff0 sp=0x8ff5f94 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8ff5ff4 sp=0x8ff5ff0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 35 [GC worker (idle)]: runtime.gopark(0x826e768, 0x8ffc030, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8ff6794 sp=0x8ff6780 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8ff67f0 sp=0x8ff6794 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8ff67f4 sp=0x8ff67f0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 18 [GC worker (idle)]: runtime.gopark(0x826e768, 0x9480030, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c3e794 sp=0x8c3e780 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8c3e7f0 sp=0x8c3e794 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c3e7f4 sp=0x8c3e7f0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 goroutine 19 [GC worker (idle)]: runtime.gopark(0x826e768, 0x8c1e3d8, 0x18, 0x14, 0x0) /usr/lib/go-1.19/src/runtime/proc.go:363 +0x108 fp=0x8c3ef94 sp=0x8c3ef80 pc=0x8084dd8 runtime.gcBgMarkWorker() /usr/lib/go-1.19/src/runtime/mgc.go:1235 +0x103 fp=0x8c3eff0 sp=0x8c3ef94 pc=0x80612f3 runtime.goexit() /usr/lib/go-1.19/src/runtime/asm_386.s:1326 +0x1 fp=0x8c3eff4 sp=0x8c3eff0 pc=0x80b6601 created by runtime.gcBgMarkStartWorkers /usr/lib/go-1.19/src/runtime/mgc.go:1159 +0x25 FAIL github.com/biogo/biogo/index/kmerindex 7.016s === RUN Test OK: 2 passed --- PASS: Test (0.02s) PASS ok github.com/biogo/biogo/io/featio 0.191s === RUN Test OK: 4 passed --- PASS: Test (0.04s) PASS ok github.com/biogo/biogo/io/featio/bed 0.094s === RUN Test OK: 5 passed --- PASS: Test (0.00s) PASS ok github.com/biogo/biogo/io/featio/gff 0.040s === RUN TestSeqio --- PASS: TestSeqio (0.00s) === RUN Test OK: 3 passed --- PASS: Test (0.03s) PASS ok github.com/biogo/biogo/io/seqio 0.182s === RUN Test OK: 2 passed --- PASS: Test (0.02s) PASS ok github.com/biogo/biogo/io/seqio/alignio 0.111s ? github.com/biogo/biogo/io/seqio/fai [no test files] === RUN Test OK: 2 passed --- PASS: Test (0.03s) === RUN ExampleReader --- PASS: ExampleReader (0.00s) PASS ok github.com/biogo/biogo/io/seqio/fasta 0.066s === RUN Test OK: 2 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/io/seqio/fastq 0.070s === RUN Test OK: 7 passed --- PASS: Test (11.25s) PASS ok github.com/biogo/biogo/morass 11.290s ? github.com/biogo/biogo/pwm [no test files] === RUN TestSeq --- PASS: TestSeq (0.00s) PASS ok github.com/biogo/biogo/seq 0.043s === RUN Test OK: 1 passed --- PASS: Test (0.01s) === RUN ExampleNewSeq --- PASS: ExampleNewSeq (0.00s) === RUN ExampleSeq_Add --- PASS: ExampleSeq_Add (0.00s) === RUN ExampleSeq_Clone --- PASS: ExampleSeq_Clone (0.00s) === RUN ExampleSeq_Rows --- PASS: ExampleSeq_Rows (0.00s) === RUN ExampleSeq_join --- PASS: ExampleSeq_join (0.00s) === RUN ExampleSeq_Len --- PASS: ExampleSeq_Len (0.00s) === RUN ExampleSeq_RevComp --- PASS: ExampleSeq_RevComp (0.00s) === RUN ExampleSeq_stitch --- PASS: ExampleSeq_stitch (0.00s) === RUN ExampleSeq_truncate --- PASS: ExampleSeq_truncate (0.00s) === RUN ExampleNewQSeq --- PASS: ExampleNewQSeq (0.00s) === RUN ExampleQSeq_Add --- PASS: ExampleQSeq_Add (0.00s) === RUN ExampleQSeq_Clone --- PASS: ExampleQSeq_Clone (0.00s) === RUN ExampleQSeq_Rows --- PASS: ExampleQSeq_Rows (0.00s) === RUN ExampleQSeq_join --- PASS: ExampleQSeq_join (0.00s) === RUN ExampleQSeq_Len --- PASS: ExampleQSeq_Len (0.00s) === RUN ExampleQSeq_RevComp --- PASS: ExampleQSeq_RevComp (0.00s) === RUN ExampleQSeq_stitch --- PASS: ExampleQSeq_stitch (0.00s) === RUN ExampleQSeq_truncate --- PASS: ExampleQSeq_truncate (0.00s) PASS ok github.com/biogo/biogo/seq/alignment 0.066s === RUN Test OK: 1 passed --- PASS: Test (0.01s) === RUN ExampleNewQSeq --- PASS: ExampleNewQSeq (0.00s) === RUN ExampleQSeq_Validate --- PASS: ExampleQSeq_Validate (0.00s) === RUN ExampleQSeq_AppendQLetters --- PASS: ExampleQSeq_AppendQLetters (0.00s) === RUN ExampleNewSeq --- PASS: ExampleNewSeq (0.00s) === RUN ExampleSeq_Validate --- PASS: ExampleSeq_Validate (0.00s) === RUN ExampleSeq_truncate_a --- PASS: ExampleSeq_truncate_a (0.00s) === RUN ExampleSeq_truncate_b --- PASS: ExampleSeq_truncate_b (0.00s) === RUN ExampleSeq_RevComp --- PASS: ExampleSeq_RevComp (0.00s) === RUN ExampleSeq_join --- PASS: ExampleSeq_join (0.00s) === RUN ExampleSeq_stitch --- PASS: ExampleSeq_stitch (0.00s) === RUN ExampleSeq_compose --- PASS: ExampleSeq_compose (0.00s) PASS ok github.com/biogo/biogo/seq/linear 0.057s === RUN Test OK: 1 passed --- PASS: Test (0.00s) === RUN ExampleNewMulti --- PASS: ExampleNewMulti (0.00s) === RUN ExampleMulti_Add --- PASS: ExampleMulti_Add (0.00s) === RUN ExampleMulti_Clone --- PASS: ExampleMulti_Clone (0.00s) === RUN ExampleMulti_Rows --- PASS: ExampleMulti_Rows (0.00s) === RUN ExampleMulti_IsFlush --- PASS: ExampleMulti_IsFlush (0.00s) === RUN ExampleMulti_Join --- PASS: ExampleMulti_Join (0.00s) === RUN ExampleMulti_Len --- PASS: ExampleMulti_Len (0.00s) === RUN ExampleMulti_RevComp --- PASS: ExampleMulti_RevComp (0.00s) === RUN ExampleMulti_Stitch --- PASS: ExampleMulti_Stitch (0.00s) === RUN ExampleMulti_Truncate --- PASS: ExampleMulti_Truncate (0.00s) === RUN ExampleSet_AppendEach --- PASS: ExampleSet_AppendEach (0.00s) === RUN ExampleSet_Rows --- PASS: ExampleSet_Rows (0.00s) === RUN ExampleSet_Row --- PASS: ExampleSet_Row (0.00s) === RUN ExampleSet_Len --- PASS: ExampleSet_Len (0.00s) PASS ok github.com/biogo/biogo/seq/multi 0.039s === RUN Test OK: 1 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/seq/quality 0.044s === RUN Test OK: 4 passed --- PASS: Test (0.04s) === RUN ExampleTruncate_a --- PASS: ExampleTruncate_a (0.00s) === RUN ExampleTruncate_b --- PASS: ExampleTruncate_b (0.00s) === RUN ExampleJoin --- PASS: ExampleJoin (0.00s) === RUN ExampleStitch --- PASS: ExampleStitch (0.00s) PASS ok github.com/biogo/biogo/seq/sequtils 0.110s === RUN Test OK: 11 passed --- PASS: Test (0.05s) PASS ok github.com/biogo/biogo/util 0.092s FAIL dh_auto_test: error: cd _build && go test -vet=off -v -p 8 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util returned exit code 1 make: *** [debian/rules:4: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2915 and its subdirectories