I: pbuilder: network access will be disabled during build
I: Current time: Fri Jun 9 06:09:26 -12 2023
I: pbuilder-time-stamp: 1686334166
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [libbio-coordinate-perl_1.7.1-4.dsc]
I: copying [./libbio-coordinate-perl_1.7.1.orig.tar.gz]
I: copying [./libbio-coordinate-perl_1.7.1-4.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Nov 24 02:41:32 2020 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libbio-coordinate-perl_1.7.1-4.dsc: no acceptable signature found
dpkg-source: info: extracting libbio-coordinate-perl in libbio-coordinate-perl-1.7.1
dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1.orig.tar.gz
dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/30917/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='687b6a7559d1450497b08d61f96b7a53'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='30917'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7py0TwYd/pbuilderrc_aSYD --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7py0TwYd/b1 --logfile b1/build.log libbio-coordinate-perl_1.7.1-4.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos2-i386 5.10.0-23-686-pae #1 SMP Debian 5.10.179-1 (2023-05-12) i686 GNU/Linux
I: ls -l /bin
total 6036
-rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 20 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 20 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash
-rwxr-xr-x 1 root root 137160 Sep 20 2022 date
-rwxr-xr-x 1 root root 100364 Sep 20 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 20 2022 df
-rwxr-xr-x 1 root root 162152 Sep 20 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
-rwxr-xr-x 1 root root 34664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
-rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt
-rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount
-rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname
-rwxr-xr-x 1 root root 75756 Sep 20 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 22 23:43 login
-rwxr-xr-x 1 root root 162152 Sep 20 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk
-rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 22 22:20 more
-rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount
-rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 20 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed
lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
-rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 20 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 22 22:20 su
-rwxr-xr-x 1 root root 38792 Sep 20 2022 sync
-rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar
-rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 120776 Sep 20 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 20 2022 true
-rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount
-rwxr-xr-x 1 root root 38760 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/30917/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), bioperl (>= 1.7.1), perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19599 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on bioperl (>= 1.7.1); however:
Package bioperl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libexception-class-perl{a} libfile-stripnondeterminism-perl{a} libicu72{a} libio-string-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget
0 packages upgraded, 46 newly installed, 0 to remove and 0 not upgraded.
Need to get 22.6 MB of archives. After unpacking 83.8 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 libio-string-perl all 1.08-4 [12.1 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 libdata-stag-perl all 0.14-3 [448 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 libexception-class-perl all 1.45-1 [34.6 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 libtext-diff-perl all 1.45-2 [27.2 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 libtest-differences-perl all 0.69-1 [18.9 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 libtest-warn-perl all 0.37-2 [14.5 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libtest-most-perl all 0.38-1 [25.1 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 bioperl all 1.7.8-1 [246 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Fetched 22.6 MB in 1s (17.5 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19599 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:i386.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ...
Unpacking libmagic1:i386 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ...
Unpacking libuchardet0:i386 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_i386.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libio-string-perl.
Preparing to unpack .../15-libio-string-perl_1.08-4_all.deb ...
Unpacking libio-string-perl (1.08-4) ...
Selecting previously unselected package libdata-stag-perl.
Preparing to unpack .../16-libdata-stag-perl_0.14-3_all.deb ...
Unpacking libdata-stag-perl (0.14-3) ...
Selecting previously unselected package libbio-perl-perl.
Preparing to unpack .../17-libbio-perl-perl_1.7.8-1_all.deb ...
Unpacking libbio-perl-perl (1.7.8-1) ...
Selecting previously unselected package libclass-data-inheritable-perl.
Preparing to unpack .../18-libclass-data-inheritable-perl_0.08-3_all.deb ...
Unpacking libclass-data-inheritable-perl (0.08-3) ...
Selecting previously unselected package libdevel-stacktrace-perl.
Preparing to unpack .../19-libdevel-stacktrace-perl_2.0400-2_all.deb ...
Unpacking libdevel-stacktrace-perl (2.0400-2) ...
Selecting previously unselected package libexception-class-perl.
Preparing to unpack .../20-libexception-class-perl_1.45-1_all.deb ...
Unpacking libexception-class-perl (1.45-1) ...
Selecting previously unselected package libtest-deep-perl.
Preparing to unpack .../21-libtest-deep-perl_1.204-1_all.deb ...
Unpacking libtest-deep-perl (1.204-1) ...
Selecting previously unselected package libcapture-tiny-perl.
Preparing to unpack .../22-libcapture-tiny-perl_0.48-2_all.deb ...
Unpacking libcapture-tiny-perl (0.48-2) ...
Selecting previously unselected package libalgorithm-diff-perl.
Preparing to unpack .../23-libalgorithm-diff-perl_1.201-1_all.deb ...
Unpacking libalgorithm-diff-perl (1.201-1) ...
Selecting previously unselected package libtext-diff-perl.
Preparing to unpack .../24-libtext-diff-perl_1.45-2_all.deb ...
Unpacking libtext-diff-perl (1.45-2) ...
Selecting previously unselected package libtest-differences-perl.
Preparing to unpack .../25-libtest-differences-perl_0.69-1_all.deb ...
Unpacking libtest-differences-perl (0.69-1) ...
Selecting previously unselected package libsub-uplevel-perl.
Preparing to unpack .../26-libsub-uplevel-perl_0.2800-3_all.deb ...
Unpacking libsub-uplevel-perl (0.2800-3) ...
Selecting previously unselected package libtest-exception-perl.
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Unpacking libtest-exception-perl (0.43-3) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Reading package lists...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/libbio-coordinate-perl-1.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-coordinate-perl_1.7.1-4_source.changes
dpkg-buildpackage: info: source package libbio-coordinate-perl
dpkg-buildpackage: info: source version 1.7.1-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Coordinate
Writing MYMETA.yml and MYMETA.json
dh_auto_build
make -j8
make[1]: Entering directory '/build/libbio-coordinate-perl-1.7.1'
cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm
cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm
cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm
cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm
cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm
cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm
cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm
cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm
cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm
cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm
cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm
cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm
cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm
Manifying 13 pod documents
make[1]: Leaving directory '/build/libbio-coordinate-perl-1.7.1'
dh_auto_test
make -j8 test TEST_VERBOSE=1
make[1]: Entering directory '/build/libbio-coordinate-perl-1.7.1'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ..............
1..13
ok 1 - Bio/Coordinate.pm loaded ok
ok 2 - Bio/Coordinate/Chain.pm loaded ok
ok 3 - Bio/Coordinate/Collection.pm loaded ok
ok 4 - Bio/Coordinate/ExtrapolatingPair.pm loaded ok
ok 5 - Bio/Coordinate/GeneMapper.pm loaded ok
ok 6 - Bio/Coordinate/Graph.pm loaded ok
ok 7 - Bio/Coordinate/MapperI.pm loaded ok
ok 8 - Bio/Coordinate/Pair.pm loaded ok
ok 9 - Bio/Coordinate/Result.pm loaded ok
ok 10 - Bio/Coordinate/Result/Gap.pm loaded ok
ok 11 - Bio/Coordinate/Result/Match.pm loaded ok
ok 12 - Bio/Coordinate/ResultI.pm loaded ok
ok 13 - Bio/Coordinate/Utils.pm loaded ok
ok
t/author-mojibake.t ......... skipped: these tests are for testing by the author
t/author-pod-syntax.t ....... skipped: these tests are for testing by the author
t/CoordinateBoundaryTest.t ..
1..174
ok 1 - use Bio::Location::Simple;
ok 2 - use Bio::Coordinate::Pair;
ok 3
ok 4 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple'
ok 5
ok 6 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple'
ok 7
ok 8 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple'
ok 9
ok 10 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair'
ok 11
ok 12 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair'
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI'
ok 33
ok 34 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 35
ok 36 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI'
ok 51
ok 52 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 53
ok 54 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI'
ok 69
ok 70 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 71
ok 72 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI'
ok 89
ok 90 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 91
ok 92 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101
ok 102
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple'
ok 109
ok 110 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple'
ok 111
ok 112 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple'
ok 113
ok 114 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair'
ok 115
ok 116 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair'
ok 117
ok 118
ok 119
ok 120
ok 121
ok 122
ok 123
ok 124
ok 125
ok 126
ok 127
ok 128
ok 129
ok 130
ok 131
ok 132 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 133
ok 134 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 135
ok 136
ok 137
ok 138
ok 139
ok 140
ok 141
ok 142 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 143
ok 144 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 145
ok 146
ok 147
ok 148
ok 149
ok 150
ok 151
ok 152 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 153
ok 154 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 155
ok 156
ok 157
ok 158
ok 159
ok 160
ok 161
ok 162
ok 163
ok 164 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 165
ok 166 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 167
ok 168
ok 169
ok 170
ok 171
ok 172
ok 173
ok 174
ok
t/CoordinateGraph.t .........
1..7
ok 1 - use Bio::Coordinate::Graph;
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok
t/CoordinateMapper.t ........
1..175
ok 1 - use Bio::Location::Simple;
ok 2 - use Bio::Coordinate::Pair;
ok 3 - use Bio::Coordinate::Result::Match;
ok 4 - use Bio::Coordinate::Result::Gap;
ok 5 - use Bio::Coordinate::Chain;
ok 6 - use Bio::Coordinate::Collection;
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result'
ok 15 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Location::SplitLocationI'
ok 16
ok 17
ok 18
ok 19 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::LocationI'
ok 20 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match'
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::Coordinate::Result::Gap'
ok 38 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::LocationI'
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
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ok 64
ok 65
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ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101
ok 102
ok 103
ok 104
ok 105
ok 106 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match'
ok 107
ok 108
ok 109
ok 110
ok 111
ok 112
ok 113
ok 114
ok 115
ok 116
ok 117
ok 118
ok 119
ok 120
ok 121
ok 122
ok 123
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ok 125
ok 126
ok 127
ok 128
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ok 130
ok 131
ok 132
ok 133
ok 134
ok 135
ok 136
ok 137
ok 138 - Match: |314696| Test: 314696|
ok 139
ok 140
ok 141
ok 142 - Match: |341| Test: 341|
ok 143
ok 144
ok 145
ok 146 - Match: |315843| Test: 315843|
ok 147
ok 148
ok 149
ok 150
ok 151
ok 152 - Match: |627011| Test: 627011|
ok 153
ok 154
ok 155
ok 156 - Match: |chr1| Test: chr1|
ok 157
ok 158
ok 159
ok 160
ok 161
ok 162
ok 163
ok 164
ok 165
ok 166
ok 167
ok 168
ok 169
ok 170
ok 171
ok 172
ok 173
ok 174
ok 175
ok
t/GeneCoordinateMapper.t ....
1..116
ok 1 - use Bio::Location::Simple;
ok 2 - use Bio::Coordinate::Pair;
ok 3 - use Bio::Coordinate::ExtrapolatingPair;
ok 4 - use Bio::Coordinate::GeneMapper;
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple'
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple'
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
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ok 99
ok 100
ok 101
ok 102
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108
ok 109
ok 110
ok 111
ok 112
ok 113
ok 114
ok 115
ok 116
ok
t/release-eol.t ............. skipped: these tests are for release candidate testing
All tests successful.
Files=8, Tests=485, 4 wallclock secs ( 0.10 usr 0.01 sys + 2.45 cusr 0.27 csys = 2.83 CPU)
Result: PASS
make[1]: Leaving directory '/build/libbio-coordinate-perl-1.7.1'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-coordinate-perl/
make -j8 install DESTDIR=/build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/libbio-coordinate-perl-1.7.1'
Manifying 13 pod documents
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/MapperI.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Chain.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Collection.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ExtrapolatingPair.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/GeneMapper.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ResultI.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Pair.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Utils.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Graph.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Gap.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Match.pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Utils.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Chain.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Collection.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Graph.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Pair.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::MapperI.3pm
Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ResultI.3pm
make[1]: Leaving directory '/build/libbio-coordinate-perl-1.7.1'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-coordinate-perl' in '../libbio-coordinate-perl_1.7.1-4_all.deb'.
dpkg-genbuildinfo --build=binary -O../libbio-coordinate-perl_1.7.1-4_i386.buildinfo
dpkg-genchanges --build=binary -O../libbio-coordinate-perl_1.7.1-4_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/30917 and its subdirectories
I: Current time: Fri Jun 9 06:10:32 -12 2023
I: pbuilder-time-stamp: 1686334232