I: pbuilder: network access will be disabled during build
I: Current time: Sat Jun 10 07:51:30 +14 2023
I: pbuilder-time-stamp: 1686333090
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [libchado-perl_1.31-6.dsc]
I: copying [./libchado-perl_1.31.orig.tar.gz]
I: copying [./libchado-perl_1.31-6.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Dec 5 22:43:50 2019 +14
gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438
gpgv: issuer "osallou@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libchado-perl_1.31-6.dsc: no acceptable signature found
dpkg-source: info: extracting libchado-perl in libchado-perl-1.31
dpkg-source: info: unpacking libchado-perl_1.31.orig.tar.gz
dpkg-source: info: unpacking libchado-perl_1.31-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_perl_headers
dpkg-source: info: applying force_SIMPLE
dpkg-source: info: applying fix_spelling_manpage
dpkg-source: info: applying fix_manpages
dpkg-source: info: applying setBinPathForBuilder
dpkg-source: info: applying remove_pl_extension.patch
dpkg-source: info: applying 0001-Sort-generated-build.conf-for-reproducibility.patch
dpkg-source: info: applying 0001-Sort-installed-configuration-file-for-reproducibilit.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/6222/tmp/hooks/D01_modify_environment starting
debug: Running on ionos2-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jun 10 07:51 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/6222/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/6222/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
BASH_VERSION='5.2.15(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=i386
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7 '
DIRSTACK=()
DISTRIBUTION=bookworm
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=i686
HOST_ARCH=i386
IFS='
'
INVOCATION_ID=2ce37c9ff7a042f3a44d9f6c8ac2c14e
LANG=C
LANGUAGE=de_CH:de
LC_ALL=C
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
MACHTYPE=i686-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=6222
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HNIBWRDg/pbuilderrc_OTUJ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HNIBWRDg/b2 --logfile b2/build.log --extrapackages usrmerge libchado-perl_1.31-6.dsc'
SUDO_GID=112
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://78.137.99.97:3128
I: uname -a
Linux i-capture-the-hostname 5.10.0-23-686-pae #1 SMP Debian 5.10.179-1 (2023-05-12) i686 GNU/Linux
I: ls -l /bin
total 6036
-rwxr-xr-x 1 root root 1408088 Apr 24 11:24 bash
-rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 21 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 21 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 21 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash
-rwxr-xr-x 1 root root 137160 Sep 21 2022 date
-rwxr-xr-x 1 root root 100364 Sep 21 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 21 2022 df
-rwxr-xr-x 1 root root 162152 Sep 21 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg
lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 21 2022 echo
-rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep
-rwxr-xr-x 1 root root 34664 Sep 21 2022 false
-rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep
-rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt
-rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount
-rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname
-rwxr-xr-x 1 root root 75756 Sep 21 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 24 01:43 login
-rwxr-xr-x 1 root root 162152 Sep 21 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk
-rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 24 00:20 more
-rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount
-rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 21 2022 mv
lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 21 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts
-rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed
lrwxrwxrwx 1 root root 9 Jun 10 07:51 sh -> /bin/bash
-rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 21 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 24 00:20 su
-rwxr-xr-x 1 root root 38792 Sep 21 2022 sync
-rwxr-xr-x 1 root root 598456 Apr 7 04:25 tar
-rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile
-rwxr-xr-x 1 root root 120776 Sep 21 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 21 2022 true
-rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount
-rwxr-xr-x 1 root root 38760 Sep 21 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl
lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/6222/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 11~), perl, libclass-dbi-pg-perl, libxml-libxslt-perl, liblog-log4perl-perl, bioperl, libgo-perl, libdbd-pg-perl, libdbi-perl, libgd-gd2-perl, libdigest-md5-file-perl, libgraph-perl, libdata-stag-perl, libxml-perl, libclass-dbi-perl, libclass-dbi-pager-perl, libxml-simple-perl, libwww-perl, libtemplate-perl, libcgi-session-perl, libsql-translator-perl, libdbix-dbstag-perl, libmodule-build-perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19599 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on libclass-dbi-pg-perl; however:
Package libclass-dbi-pg-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-libxslt-perl; however:
Package libxml-libxslt-perl is not installed.
pbuilder-satisfydepends-dummy depends on liblog-log4perl-perl; however:
Package liblog-log4perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on bioperl; however:
Package bioperl is not installed.
pbuilder-satisfydepends-dummy depends on libgo-perl; however:
Package libgo-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdbd-pg-perl; however:
Package libdbd-pg-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdbi-perl; however:
Package libdbi-perl is not installed.
pbuilder-satisfydepends-dummy depends on libgd-gd2-perl; however:
Package libgd-gd2-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdigest-md5-file-perl; however:
Package libdigest-md5-file-perl is not installed.
pbuilder-satisfydepends-dummy depends on libgraph-perl; however:
Package libgraph-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdata-stag-perl; however:
Package libdata-stag-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-perl; however:
Package libxml-perl is not installed.
pbuilder-satisfydepends-dummy depends on libclass-dbi-perl; however:
Package libclass-dbi-perl is not installed.
pbuilder-satisfydepends-dummy depends on libclass-dbi-pager-perl; however:
Package libclass-dbi-pager-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-simple-perl; however:
Package libxml-simple-perl is not installed.
pbuilder-satisfydepends-dummy depends on libwww-perl; however:
Package libwww-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtemplate-perl; however:
Package libtemplate-perl is not installed.
pbuilder-satisfydepends-dummy depends on libcgi-session-perl; however:
Package libcgi-session-perl is not installed.
pbuilder-satisfydepends-dummy depends on libsql-translator-perl; however:
Package libsql-translator-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdbix-dbstag-perl; however:
Package libdbix-dbstag-perl is not installed.
pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however:
Package libmodule-build-perl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20220623{a} libalgorithm-diff-perl{a} libaom3{a} libappconfig-perl{a} libarchive-zip-perl{a} libavif15{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcapture-tiny-perl{a} libcarp-clan-perl{a} libcdt5{a} libcgi-pm-perl{a} libcgi-session-perl{a} libcgraph6{a} libclass-accessor-chained-perl{a} libclass-accessor-perl{a} libclass-data-inheritable-perl{a} libclass-dbi-pager-perl{a} libclass-dbi-perl{a} libclass-dbi-pg-perl{a} libclass-inspector-perl{a} libclass-makemethods-perl{a} libclass-method-modifiers-perl{a} libclass-trigger-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libdata-page-perl{a} libdata-stag-perl{a} libdatrie1{a} libdav1d6{a} libdbd-pg-perl{a} libdbi-perl{a} libdbix-contextualfetch-perl{a} libdbix-dbschema-perl{a} libdbix-dbstag-perl{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-stacktrace-perl{a} libdigest-md5-file-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libexporter-lite-perl{a} libfile-listing-perl{a} libfile-sharedir-perl{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfreezethaw-perl{a} libfribidi0{a} libgav1-1{a} libgd-perl{a} libgd3{a} libglib2.0-0{a} libgo-perl{a} libgraph-perl{a} libgraphite2-3{a} libgraphviz-perl{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheap-perl{a} libheif1{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu72{a} libima-dbi-perl{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libio-stringy-perl{a} libipc-run-perl{a} libjbig0{a} libjpeg62-turbo{a} liblab-gamut1{a} libldap-2.5-0{a} liblerc4{a} liblog-log4perl-perl{a} libltdl7{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnuma1{a} libpackage-variant-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparse-recdescent-perl{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpq5{a} librav1e0{a} libregexp-ipv6-perl{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libset-object-perl{a} libsm6{a} libsql-translator-perl{a} libstrictures-perl{a} libsub-name-perl{a} libsub-override-perl{a} libsub-quote-perl{a} libsub-uplevel-perl{a} libtemplate-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libuniversal-moniker-perl{a} liburi-perl{a} libwebp7{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml-libxml-perl{a} libxml-libxslt-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-simple-perl{a} libxml-twig-perl{a} libxml-xpath-perl{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxt6{a} libyaml-perl{a} libyuv0{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a} x11-common{a}
The following packages are RECOMMENDED but will NOT be installed:
bioperl-run curl fonts-liberation2 libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libcgi-fast-perl libclass-dbi-abstractsearch-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-sqlite3-perl libglib2.0-data libgts-bin libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libipc-shareable-perl libjson-maybexs-perl libldap-common liblingua-en-inflect-perl liblist-moreutils-perl liblog-dispatch-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libmodule-signature-perl libnamespace-clean-perl libpod-readme-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtext-recordparser-perl libtie-ixhash-perl libxml-checker-perl libxml-dom-xpath-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-writer-perl libxstring-perl libyaml-libyaml-perl libyaml-syck-perl lynx perl-doc perl-tk shared-mime-info wget xdg-user-dirs xsltproc
0 packages upgraded, 205 newly installed, 0 to remove and 0 not upgraded.
Need to get 52.4 MB of archives. After unpacking 170 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 netbase all 6.4 [12.8 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.9-1 [1420 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libio-string-perl all 1.08-4 [12.1 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 libdata-stag-perl all 0.14-3 [448 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get: 24 http://deb.debian.org/debian bookworm/main i386 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 libexception-class-perl all 1.45-1 [34.6 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 libtext-diff-perl all 1.45-2 [27.2 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libtest-differences-perl all 0.69-1 [18.9 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libtest-warn-perl all 0.37-2 [14.5 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 libtest-most-perl all 0.38-1 [25.1 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 bioperl all 1.7.8-1 [246 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 43 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libcdt5 i386 2.42.2-7+b3 [40.5 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libcgraph6 i386 2.42.2-7+b3 [67.2 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 libaom3 i386 3.6.0-1 [1895 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 libdav1d6 i386 1.0.0-2 [316 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 libabsl20220623 i386 20220623.1-1 [444 kB]
Get: 64 http://deb.debian.org/debian bookworm/main i386 libgav1-1 i386 0.18.0-1+b1 [307 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 librav1e0 i386 0.5.1-6 [615 kB]
Get: 66 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB]
Get: 67 http://deb.debian.org/debian bookworm/main i386 libyuv0 i386 0.0~git20230123.b2528b0-1 [108 kB]
Get: 68 http://deb.debian.org/debian bookworm/main i386 libavif15 i386 0.11.1-1 [101 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 libde265-0 i386 1.0.11-1 [193 kB]
Get: 70 http://deb.debian.org/debian bookworm/main i386 libnuma1 i386 2.0.16-1 [22.7 kB]
Get: 71 http://deb.debian.org/debian bookworm/main i386 libx265-199 i386 3.5-2+b1 [687 kB]
Get: 72 http://deb.debian.org/debian bookworm/main i386 libheif1 i386 1.15.1-1 [230 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 74 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.2 [293 kB]
Get: 77 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-6 [332 kB]
Get: 78 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB]
Get: 80 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB]
Get: 82 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB]
Get: 83 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB]
Get: 84 http://deb.debian.org/debian bookworm/main i386 libxpm4 i386 1:3.5.12-1.1 [50.0 kB]
Get: 85 http://deb.debian.org/debian bookworm/main i386 libgd3 i386 2.3.3-9 [129 kB]
Get: 86 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB]
Get: 87 http://deb.debian.org/debian bookworm/main i386 libgts-0.7-5 i386 0.7.6+darcs121130-5+b1 [162 kB]
Get: 88 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB]
Get: 89 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB]
Get: 90 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB]
Get: 91 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB]
Get: 92 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB]
Get: 93 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB]
Get: 94 http://deb.debian.org/debian bookworm/main i386 libltdl7 i386 2.4.7-5 [394 kB]
Get: 95 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB]
Get: 96 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 97 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB]
Get: 98 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB]
Get: 99 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB]
Get: 100 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB]
Get: 101 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB]
Get: 102 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB]
Get: 103 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB]
Get: 104 http://deb.debian.org/debian bookworm/main i386 libpathplan4 i386 2.42.2-7+b3 [42.3 kB]
Get: 105 http://deb.debian.org/debian bookworm/main i386 libgvc6 i386 2.42.2-7+b3 [711 kB]
Get: 106 http://deb.debian.org/debian bookworm/main i386 libgvpr2 i386 2.42.2-7+b3 [197 kB]
Get: 107 http://deb.debian.org/debian bookworm/main i386 liblab-gamut1 i386 2.42.2-7+b3 [197 kB]
Get: 108 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB]
Get: 109 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB]
Get: 110 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB]
Get: 111 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB]
Get: 112 http://deb.debian.org/debian bookworm/main i386 libxmu6 i386 2:1.1.3-3 [62.5 kB]
Get: 113 http://deb.debian.org/debian bookworm/main i386 libxaw7 i386 2:1.0.14-1 [209 kB]
Get: 114 http://deb.debian.org/debian bookworm/main i386 graphviz i386 2.42.2-7+b3 [573 kB]
Get: 115 http://deb.debian.org/debian bookworm/main i386 libappconfig-perl all 1.71-2.2 [66.9 kB]
Get: 116 http://deb.debian.org/debian bookworm/main i386 libb-hooks-op-check-perl i386 0.22-2+b1 [10.6 kB]
Get: 117 http://deb.debian.org/debian bookworm/main i386 libcarp-clan-perl all 6.08-2 [14.1 kB]
Get: 118 http://deb.debian.org/debian bookworm/main i386 libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get: 119 http://deb.debian.org/debian bookworm/main i386 libregexp-ipv6-perl all 0.03-3 [5212 B]
Get: 120 http://deb.debian.org/debian bookworm/main i386 liburi-perl all 5.17-1 [90.4 kB]
Get: 121 http://deb.debian.org/debian bookworm/main i386 libhtml-parser-perl i386 3.81-1 [102 kB]
Get: 122 http://deb.debian.org/debian bookworm/main i386 libcgi-pm-perl all 4.55-1 [220 kB]
Get: 123 http://deb.debian.org/debian bookworm/main i386 libcgi-session-perl all 4.48-4 [118 kB]
Get: 124 http://deb.debian.org/debian bookworm/main i386 libsub-name-perl i386 0.26-2+b1 [12.7 kB]
Get: 125 http://deb.debian.org/debian bookworm/main i386 libclass-accessor-perl all 0.51-2 [22.7 kB]
Get: 126 http://deb.debian.org/debian bookworm/main i386 libclass-accessor-chained-perl all 0.01.1~debian-5 [8704 B]
Get: 127 http://deb.debian.org/debian bookworm/main i386 libio-stringy-perl all 2.111-3 [56.5 kB]
Get: 128 http://deb.debian.org/debian bookworm/main i386 libclass-trigger-perl all 0.15-2 [12.4 kB]
Get: 129 http://deb.debian.org/debian bookworm/main i386 libclone-perl i386 0.46-1 [13.8 kB]
Get: 130 http://deb.debian.org/debian bookworm/main i386 libdbi-perl i386 1.643-4 [777 kB]
Get: 131 http://deb.debian.org/debian bookworm/main i386 libdbix-contextualfetch-perl all 1.03-5 [8352 B]
Get: 132 http://deb.debian.org/debian bookworm/main i386 libima-dbi-perl all 0.35-3 [23.3 kB]
Get: 133 http://deb.debian.org/debian bookworm/main i386 libuniversal-moniker-perl all 0.08-10 [6108 B]
Get: 134 http://deb.debian.org/debian bookworm/main i386 libclass-dbi-perl all 3.0.17-5 [106 kB]
Get: 135 http://deb.debian.org/debian bookworm/main i386 libdata-page-perl all 2.03-1 [11.6 kB]
Get: 136 http://deb.debian.org/debian bookworm/main i386 libexporter-lite-perl all 0.09-2 [10.7 kB]
Get: 137 http://deb.debian.org/debian bookworm/main i386 libclass-dbi-pager-perl all 0.08-6 [8112 B]
Get: 138 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB]
Get: 139 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB]
Get: 140 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB]
Get: 141 http://deb.debian.org/debian bookworm/main i386 libpq5 i386 15.3-0+deb12u1 [192 kB]
Get: 142 http://deb.debian.org/debian bookworm/main i386 libdbd-pg-perl i386 3.16.0-2 [213 kB]
Get: 143 http://deb.debian.org/debian bookworm/main i386 libclass-dbi-pg-perl all 0.09-6 [9700 B]
Get: 144 http://deb.debian.org/debian bookworm/main i386 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get: 145 http://deb.debian.org/debian bookworm/main i386 libclass-makemethods-perl all 1.01-7 [293 kB]
Get: 146 http://deb.debian.org/debian bookworm/main i386 libclass-method-modifiers-perl all 2.14-1 [18.1 kB]
Get: 147 http://deb.debian.org/debian bookworm/main i386 libclass-xsaccessor-perl i386 1.19-4+b1 [38.0 kB]
Get: 148 http://deb.debian.org/debian bookworm/main i386 libfreezethaw-perl all 0.5001-3 [16.0 kB]
Get: 149 http://deb.debian.org/debian bookworm/main i386 libdbix-dbschema-perl all 0.47-1 [57.1 kB]
Get: 150 http://deb.debian.org/debian bookworm/main i386 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB]
Get: 151 http://deb.debian.org/debian bookworm/main i386 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 152 http://deb.debian.org/debian bookworm/main i386 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 153 http://deb.debian.org/debian bookworm/main i386 libhttp-date-perl all 6.05-2 [10.5 kB]
Get: 154 http://deb.debian.org/debian bookworm/main i386 libfile-listing-perl all 6.15-1 [12.6 kB]
Get: 155 http://deb.debian.org/debian bookworm/main i386 libhtml-tree-perl all 5.07-3 [211 kB]
Get: 156 http://deb.debian.org/debian bookworm/main i386 libio-html-perl all 1.004-3 [16.2 kB]
Get: 157 http://deb.debian.org/debian bookworm/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 158 http://deb.debian.org/debian bookworm/main i386 libhttp-message-perl all 6.44-1 [81.7 kB]
Get: 159 http://deb.debian.org/debian bookworm/main i386 libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get: 160 http://deb.debian.org/debian bookworm/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get: 161 http://deb.debian.org/debian bookworm/main i386 perl-openssl-defaults i386 7+b1 [7920 B]
Get: 162 http://deb.debian.org/debian bookworm/main i386 libnet-ssleay-perl i386 1.92-2+b1 [318 kB]
Get: 163 http://deb.debian.org/debian bookworm/main i386 libio-socket-ssl-perl all 2.081-2 [219 kB]
Get: 164 http://deb.debian.org/debian bookworm/main i386 libnet-http-perl all 6.22-1 [25.3 kB]
Get: 165 http://deb.debian.org/debian bookworm/main i386 liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get: 166 http://deb.debian.org/debian bookworm/main i386 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get: 167 http://deb.debian.org/debian bookworm/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 168 http://deb.debian.org/debian bookworm/main i386 libwww-perl all 6.68-1 [186 kB]
Get: 169 http://deb.debian.org/debian bookworm/main i386 libxml-parser-perl i386 2.46-4 [202 kB]
Get: 170 http://deb.debian.org/debian bookworm/main i386 libxml-perl all 0.08-4 [93.0 kB]
Get: 171 http://deb.debian.org/debian bookworm/main i386 libdbix-dbstag-perl all 0.12-4 [102 kB]
Get: 172 http://deb.debian.org/debian bookworm/main i386 libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get: 173 http://deb.debian.org/debian bookworm/main i386 libdevel-callchecker-perl i386 0.008-2 [15.8 kB]
Get: 174 http://deb.debian.org/debian bookworm/main i386 libdigest-md5-file-perl all 0.08-1.1 [9608 B]
Get: 175 http://deb.debian.org/debian bookworm/main i386 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get: 176 http://deb.debian.org/debian bookworm/main i386 libgd-perl i386 2.76-4+b1 [131 kB]
Get: 177 http://deb.debian.org/debian bookworm/main i386 libio-pty-perl i386 1:1.17-1 [36.5 kB]
Get: 178 http://deb.debian.org/debian bookworm/main i386 libipc-run-perl all 20220807.0-1 [104 kB]
Get: 179 http://deb.debian.org/debian bookworm/main i386 libxml-twig-perl all 1:3.52-2 [181 kB]
Get: 180 http://deb.debian.org/debian bookworm/main i386 libxml-xpath-perl all 1.48-1 [71.0 kB]
Get: 181 http://deb.debian.org/debian bookworm/main i386 libgraphviz-perl all 2.24-1 [92.7 kB]
Get: 182 http://deb.debian.org/debian bookworm/main i386 libyaml-perl all 1.30-2 [63.4 kB]
Get: 183 http://deb.debian.org/debian bookworm/main i386 libgo-perl all 0.15-9 [268 kB]
Get: 184 http://deb.debian.org/debian bookworm/main i386 libheap-perl all 0.80-5 [34.3 kB]
Get: 185 http://deb.debian.org/debian bookworm/main i386 libset-object-perl i386 1.42-1+b2 [38.5 kB]
Get: 186 http://deb.debian.org/debian bookworm/main i386 libgraph-perl all 1:0.9726-1 [110 kB]
Get: 187 http://deb.debian.org/debian bookworm/main i386 libparams-classify-perl i386 0.015-2+b1 [23.7 kB]
Get: 188 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 189 http://deb.debian.org/debian bookworm/main i386 libimport-into-perl all 1.002005-2 [11.3 kB]
Get: 190 http://deb.debian.org/debian bookworm/main i386 liblog-log4perl-perl all 1.57-1 [367 kB]
Get: 191 http://deb.debian.org/debian bookworm/main i386 libmodule-build-perl all 0.423200-1 [253 kB]
Get: 192 http://deb.debian.org/debian bookworm/main i386 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get: 193 http://deb.debian.org/debian bookworm/main i386 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get: 194 http://deb.debian.org/debian bookworm/main i386 libmoo-perl all 2.005005-1 [58.0 kB]
Get: 195 http://deb.debian.org/debian bookworm/main i386 libstrictures-perl all 2.000006-1 [18.6 kB]
Get: 196 http://deb.debian.org/debian bookworm/main i386 libpackage-variant-perl all 1.003002-2 [13.9 kB]
Get: 197 http://deb.debian.org/debian bookworm/main i386 libsql-translator-perl all 1.62-3 [391 kB]
Get: 198 http://deb.debian.org/debian bookworm/main i386 libtemplate-perl i386 2.27-1+b5 [565 kB]
Get: 199 http://deb.debian.org/debian bookworm/main i386 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get: 200 http://deb.debian.org/debian bookworm/main i386 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get: 201 http://deb.debian.org/debian bookworm/main i386 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get: 202 http://deb.debian.org/debian bookworm/main i386 libxml-libxml-perl i386 2.0207+dfsg+really+2.0134-1+b1 [333 kB]
Get: 203 http://deb.debian.org/debian bookworm/main i386 libxslt1.1 i386 1.1.35-1 [253 kB]
Get: 204 http://deb.debian.org/debian bookworm/main i386 libxml-libxslt-perl i386 2.002001-1 [49.8 kB]
Get: 205 http://deb.debian.org/debian bookworm/main i386 libxml-simple-perl all 2.25-2 [69.8 kB]
Fetched 52.4 MB in 4s (11.8 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package netbase.
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(Reading database ... 19599 files and directories currently installed.)
Preparing to unpack .../000-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../002-openssl_3.0.9-1_i386.deb ...
Unpacking openssl (3.0.9-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../003-ca-certificates_20230311_all.deb ...
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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl'
Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl'
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
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Setting up libpng16-16:i386 (1.6.39-2) ...
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Setting up netbase (6.4) ...
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Setting up libxml2:i386 (2.9.14+dfsg-1.2) ...
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libgraph-perl (1:0.9726-1) ...
Setting up libdevel-callchecker-perl:i386 (0.008-2) ...
Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libdbix-contextualfetch-perl (1.03-5) ...
Setting up libthai0:i386 (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libima-dbi-perl (0.35-3) ...
Setting up libtest-exception-perl (0.43-3) ...
Setting up libdata-page-perl (2.03-1) ...
Setting up libfreetype6:i386 (2.12.1+dfsg-5) ...
Setting up ucf (3.0043+nmu1) ...
Setting up libtemplate-perl (2.27-1+b5) ...
Setting up libx265-199:i386 (3.5-2+b1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libgvpr2:i386 (2.42.2-7+b3) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up libhtml-parser-perl:i386 (3.81-1) ...
Setting up libxslt1.1:i386 (1.1.35-1) ...
Setting up libclass-dbi-perl (3.0.17-5) ...
Setting up libx11-6:i386 (2:1.8.4-2) ...
Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ...
Setting up libfontconfig1:i386 (2.14.1-4) ...
Setting up libsm6:i386 (2:1.2.3-1) ...
Setting up libio-socket-ssl-perl (2.081-2) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up fontconfig (2.14.1-4) ...
Regenerating fonts cache... done.
Setting up libxpm4:i386 (1:3.5.12-1.1) ...
Setting up libxrender1:i386 (1:0.9.10-1.1) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up libtest-most-perl (0.38-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:i386 (0.015-2+b1) ...
Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ...
Setting up libcgi-pm-perl (4.55-1) ...
Setting up libheif1:i386 (1.15.1-1) ...
Setting up libpq5:i386 (15.3-0+deb12u1) ...
Setting up libxext6:i386 (2:1.3.4-1+b1) ...
Setting up libdbd-pg-perl (3.16.0-2) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libcairo2:i386 (1.16.0-7) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libcgi-session-perl (4.48-4) ...
Setting up libgd3:i386 (2.3.3-9) ...
Setting up libclass-dbi-pager-perl (0.08-6) ...
Setting up libxt6:i386 (1:1.2.1-1.1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ...
Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ...
Setting up bioperl (1.7.8-1) ...
Setting up libclass-dbi-pg-perl (0.09-6) ...
Setting up libxmu6:i386 (2:1.1.3-3) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up debhelper (13.11.4) ...
Setting up libxaw7:i386 (2:1.0.14-1) ...
Setting up libgd-perl (2.76-4+b1) ...
Setting up libgvc6 (2.42.2-7+b3) ...
Setting up libxml-simple-perl (2.25-2) ...
Setting up libxml-libxslt-perl:i386 (2.002001-1) ...
Setting up libpackage-variant-perl (1.003002-2) ...
Setting up graphviz (2.42.2-7+b3) ...
Setting up libsql-translator-perl (1.62-3) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up libwww-perl (6.68-1) ...
Setting up libdigest-md5-file-perl (0.08-1.1) ...
Setting up libxml-parser-perl (2.46-4) ...
Setting up libxml-twig-perl (1:3.52-2) ...
Setting up libxml-xpath-perl (1.48-1) ...
Setting up libxml-perl (0.08-4) ...
Setting up libgraphviz-perl (2.24-1) ...
Setting up libdbix-dbstag-perl (0.12-4) ...
Setting up libgo-perl (0.15-9) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
fakeroot is already the newest version (1.31-1.2).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/6222/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
removed '/etc/unsupported-skip-usrmerge-conversion'
The system has been successfully converted.
I: user script /srv/workspace/pbuilder/6222/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/libchado-perl-1.31/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libchado-perl_1.31-6_source.changes
dpkg-buildpackage: info: source package libchado-perl
dpkg-buildpackage: info: source version 1.31-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Olivier Sallou <osallou@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
fakeroot debian/rules clean
dh clean --buildsystem=perl_makemaker
dh_auto_clean -O--buildsystem=perl_makemaker
dh_autoreconf_clean -O--buildsystem=perl_makemaker
dh_clean -O--buildsystem=perl_makemaker
debian/rules build
dh build --buildsystem=perl_makemaker
dh_update_autotools_config -O--buildsystem=perl_makemaker
dh_autoreconf -O--buildsystem=perl_makemaker
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/libchado-perl-1.31'
perl Makefile.PL INSTALL_BASE=/usr DBNAME=gmod-chado DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado DBDRIVER=PostgreSQL RECONFIGURE=1 SIMPLE=Y LOCAL_TMP=/build/libchado-perl-1.31/debian/libchado-perl/tmp
Building with the following database options:
GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado
DBDRIVER=PostgreSQL
DBNAME=gmod-chado
DBUSER=chado
DBPASS=chado
DBHOST=localhost
DBPORT=5432
SCHEMA=
LOCAL_TMP=/build/libchado-perl-1.31/debian/libchado-perl/tmp
DBORGANISM=
DEFAULT=
VERSION=1.31
Extracting /build/libchado-perl-1.31/bin/../lib/Bio/Chado/AutoDBI.pm (with variable substitutions)
initializing load scripts...
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Chado' version '1.31'
Building Chado
Checking if your kit is complete...
Looks good
Warning: prerequisite Bio::Chado::Schema 0 not found.
Generating a Unix-style Makefile
Writing Makefile for chado
Writing MYMETA.yml and MYMETA.json
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
Makefile written. Now you should do the following, in order:
1. make (creates necessary build files)
2. sudo make install (creates $GMOD_ROOT and subdirectories)
-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*WARNING-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
STEP 3 WILL DELETE ANY DATA IN A DATABASE WITH THE
DATABASE NAME YOU PROVIDED!
-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*WARNING-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
3a. make load_schema (loads SQL schema into database)
or
3b. make update (update an old Chado schema and stop here)
4. make prepdb (loads basic data)
5. make ontologies (loads data for various ontologies)
Optional Targets:
make rm_locks (removes ontology lock files, allowing installation
of ontologies on successive builds of the database
without removing the ontology files altogether)
make clean (remove build related files and ontology tmp dir)
make instructions (at any moment display these instructions)
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
make[1]: Leaving directory '/build/libchado-perl-1.31'
dh_auto_build -O--buildsystem=perl_makemaker
make -j7
make[1]: Entering directory '/build/libchado-perl-1.31'
Skip blib/lib/Bio/GMOD/DB/Adapter/FeatureIterator.pm (unchanged)
Skip blib/lib/Bio/GMOD/Config2.pm (unchanged)
Skip blib/lib/Bio/GMOD/SeqUtils.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/BlastWriter.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm (unchanged)
Skip blib/lib/Bio/GMOD/Config.pm (unchanged)
Skip blib/lib/Bio/GMOD/Load.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged)
Skip blib/lib/Bio/FeatureIO/chado.pm (unchanged)
Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged)
Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/BulkWriter.pm (unchanged)
Skip blib/lib/Bio/GMOD/DB/Adapter/Wormbase.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged)
Skip blib/lib/Bio/Chado/Builder.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/TableWriter.pm (unchanged)
Skip blib/lib/Bio/Chado/Config.pm (unchanged)
Skip blib/lib/Bio/FeatureIO/chadobulk.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/AcodeWriter.pm (unchanged)
Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged)
Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged)
Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged)
Skip blib/lib/Bio/GMOD/Bulkfiles/GnomapWriter.pm (unchanged)
"/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" load/bin/bulk_load_gff3.PLS load/bin/gmod_bulk_load_gff3.pl
"/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/conf_install.PLS install_util/conf_install.pl
Extracting conf_install.pl (with variable substitutions)
"/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/src_install.PLS install_util/src_install.pl
Extracting src_install.pl (with variable substitutions)
cp bin/gmod_add_organism.pl blib/script/gmod_add_organism.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_add_organism.pl
cp bin/gmod_apollo_triggers.pl blib/script/gmod_apollo_triggers.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_apollo_triggers.pl
cp load/bin/gmod_bulk_load_gff3.pl blib/script/gmod_bulk_load_gff3.pl
cp bin/gmod_bulk_load_pubmed.pl blib/script/gmod_bulk_load_pubmed.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_gff3.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_pubmed.pl
cp bin/gmod_chado_properties.pl blib/script/gmod_chado_properties.pl
cp bin/gmod_extract_dbxref_from_gff.pl blib/script/gmod_extract_dbxref_from_gff.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_chado_properties.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_extract_dbxref_from_gff.pl
cp bin/gmod_fasta2gff3.pl blib/script/gmod_fasta2gff3.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_fasta2gff3.pl
cp bin/gmod_gff3_preprocessor.pl blib/script/gmod_gff3_preprocessor.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_gff3_preprocessor.pl
cp bin/gmod_load_cvterms.pl blib/script/gmod_load_cvterms.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_load_cvterms.pl
cp bin/gmod_make_cvtermpath.pl blib/script/gmod_make_cvtermpath.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_cvtermpath.pl
cp bin/gmod_make_gff_from_dbxref.pl blib/script/gmod_make_gff_from_dbxref.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_gff_from_dbxref.pl
cp bin/gmod_materialized_view_tool.pl blib/script/gmod_materialized_view_tool.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_materialized_view_tool.pl
cp bin/gmod_sort_gff3.pl blib/script/gmod_sort_gff3.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_sort_gff3.pl
Manifying 12 pod documents
Manifying 26 pod documents
make[1]: Leaving directory '/build/libchado-perl-1.31'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/libchado-perl-1.31'
echo "Skipping tests to avoid db access"
Skipping tests to avoid db access
make[1]: Leaving directory '/build/libchado-perl-1.31'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary --buildsystem=perl_makemaker
dh_testroot -O--buildsystem=perl_makemaker
dh_prep -O--buildsystem=perl_makemaker
dh_installdirs -O--buildsystem=perl_makemaker
dh_auto_install -O--buildsystem=perl_makemaker
make -j7 install DESTDIR=/build/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/libchado-perl-1.31'
"/usr/bin/perl" "/build/libchado-perl-1.31/install_util/conf_install.pl" 'GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' 'VERSION=1.31'
"/usr/bin/perl" "/build/libchado-perl-1.31/install_util/src_install.pl" 'GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado'
Manifying 12 pod documents
Manifying 26 pod documents
Appending installation info to /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/i686-linux-gnu-thread-multi-64int/perllocal.pod
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Builder.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Config.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/AutoDBI.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chadobulk.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chado.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config2.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/SeqUtils.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/TableWriter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GnomapWriter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/AcodeWriter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FeatureWriter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BulkWriter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FastaWriter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load/GFF.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Config.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Tools/ETA.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/Wormbase.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/FeatureIterator.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_gff3.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_extract_dbxref_from_gff.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_materialized_view_tool.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_load_cvterms.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_fasta2gff3.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_gff_from_dbxref.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_sort_gff3.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_add_organism.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chado.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config2.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Config.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GnomapWriter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MySplitLocation.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Tools::ETA.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Builder.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::TableWriter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::AcodeWriter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BlastWriter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load::GFF.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chadobulk.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FeatureWriter.3pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_gff_from_dbxref.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/addcascades
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/interactions2SIF.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff2biomart5.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_extract_dbxref_from_gff.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_chado_properties.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/test_load.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_genes2gff.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/AutoDBI.PL
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_pubmed.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/config.PLS
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi_viaTT.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff3_preprocessor.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create-so-bridge.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_add_organism.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gencode2sql.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/Skip_tables.pm
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/load_taxonomy_cvterms.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ddltrans
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/chado-build-schema.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_materialized_view_tool.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/chado-fix-flybase-instance.pl
Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/GMODCallHome.pl
make[1]: Leaving directory '/build/libchado-perl-1.31'
debian/rules override_dh_install
make[1]: Entering directory '/build/libchado-perl-1.31'
dh_install -O--buildsystem=perl_makemaker
rm -f debian/libchado-perl/usr/share/gmod/chado/load/etc/load.conf
sed -i 's/SQLFILE=\/.*\/libchado-perl/SQLFILE=/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod-chado.conf
sed -i 's/TMP=\/.*\/tmp/CONF=\/tmp/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod.conf
sed -i 's/CONF=.*\/conf/CONF=\/etc\/gmod/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod.conf
mv /build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado/conf/* debian/libchado-perl/etc/gmod/
# Give exexution rights to perl scripts
find debian/libchado-perl/ -name *.pl | xargs chmod 755
find debian/libchado-perl/ -name *.tmpl | xargs chmod 644
find debian/libchado-perl/ -name *.pm | xargs chmod 644
find debian/libchado-perl/ -name *.pod | xargs rm -f
find debian/libchado-perl/ -name .packlist | xargs rm -f
find debian/libchado-perl/ -name "*.sql" | xargs chmod a-x
chmod 755 debian/libchado-perl/usr/share/gmod/chado/soi/t/t_soi_parse_intersect
chmod 755 debian/libchado-perl/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl
mv debian/tmp/usr/bin/test* debian/libchado-perl/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/gmod_chado* debian/libchado-perl/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/config* debian/libchado-perl/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/Auto* debian/libchado-perl/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/* debian/chado-utils/usr/share/gmod/chado/bin/
mv debian/tmp/usr/lib/perl5/* debian/libchado-perl/usr/share/perl5/
rm -rf debian/libchado-perl/usr/lib/perl5
mv debian/tmp/usr/man/man3 debian/libchado-perl/usr/share/man
mv debian/tmp/usr/man/man1 debian/chado-utils/usr/share/man
cp debian/testdb.pl debian/libchado-perl/usr/share/gmod/chado/bin/
rm -rf debian/libchado-perl/usr/share/perl5/x86_64-linux-gnu-thread-multi
# Needed for runtime configure
rm -rf debian/libchado-perl/usr/share/gmod/chado/lib
rm -rf debian/libchado-perl/usr/bin
rm -rf debian/libchado-perl/usr/lib
rm -rf debian/libchado-perl/usr/share/gmod/chado/load/logs
rm -rf debian/libchado-perl/usr/share/gmod/chado/tmp
# Remove not required man pages for user (also contains pod2man errors and missing what-is)
rm -rf debian/libchado-perl/usr/share/man
# Fix perl interpreter path
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/build/libchado-perl-1.31'
debian/rules override_dh_installdocs
make[1]: Entering directory '/build/libchado-perl-1.31'
dh_installdocs
# remove installation doc
find debian -name "INSTALL.Chado*" -delete
make[1]: Leaving directory '/build/libchado-perl-1.31'
dh_installchangelogs -O--buildsystem=perl_makemaker
dh_installexamples -O--buildsystem=perl_makemaker
dh_installman -O--buildsystem=perl_makemaker
dh_installinit -O--buildsystem=perl_makemaker
dh_lintian -O--buildsystem=perl_makemaker
dh_perl -O--buildsystem=perl_makemaker
dh_link -O--buildsystem=perl_makemaker
dh_strip_nondeterminism -O--buildsystem=perl_makemaker
dh_compress -O--buildsystem=perl_makemaker
debian/rules override_dh_fixperms
make[1]: Entering directory '/build/libchado-perl-1.31'
dh_fixperms
chmod 644 debian/libchado-perl/etc/gmod/gmod-chado.conf
find debian -name create_so_bridge_command -exec chmod 644 \{\} \;
find debian -name Skip_tables.pm -exec chmod 644 \{\} \;
find debian -name "*.tt2" -exec chmod 644 \{\} \;
find debian -name "*.tmpl" -exec chmod 644 \{\} \;
make[1]: Leaving directory '/build/libchado-perl-1.31'
dh_missing -O--buildsystem=perl_makemaker
dh_installdeb -O--buildsystem=perl_makemaker
dh_gencontrol -O--buildsystem=perl_makemaker
dh_md5sums -O--buildsystem=perl_makemaker
dh_builddeb -O--buildsystem=perl_makemaker
dpkg-deb: building package 'chado-utils' in '../chado-utils_1.31-6_all.deb'.
dpkg-deb: building package 'libchado-perl' in '../libchado-perl_1.31-6_all.deb'.
dpkg-genbuildinfo --build=binary -O../libchado-perl_1.31-6_i386.buildinfo
dpkg-genchanges --build=binary -O../libchado-perl_1.31-6_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/6222/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/6222/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/6222 and its subdirectories
I: Current time: Sat Jun 10 07:55:04 +14 2023
I: pbuilder-time-stamp: 1686333304