I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 24 03:30:55 -12 2023 I: pbuilder-time-stamp: 1682350255 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [minimap2_2.24+dfsg-3.dsc] I: copying [./minimap2_2.24+dfsg.orig.tar.xz] I: copying [./minimap2_2.24+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 30 07:57:09 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./minimap2_2.24+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting minimap2 in minimap2-2.24+dfsg dpkg-source: info: unpacking minimap2_2.24+dfsg.orig.tar.xz dpkg-source: info: unpacking minimap2_2.24+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying do_not_use_natbib.bst.patch dpkg-source: info: applying ar.patch dpkg-source: info: applying link_mappy_to_libminimap.patch dpkg-source: info: applying python-sse4-arch.patch dpkg-source: info: applying simde dpkg-source: info: applying reenable-simde.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20116/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='72cf7c76295c4cf38fd965bef88e124a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20116' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Vzh2aSAn/pbuilderrc_i8Zo --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Vzh2aSAn/b1 --logfile b1/build.log minimap2_2.24+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Feb 12 08:21 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:21 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/20116/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-setuptools, dh-python, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-science; however: Package texlive-science is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on gnuplot; however: Package gnuplot is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} aglfn{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} d-shlibs{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dmsetup{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-gfs-baskerville{a} fonts-gfs-porson{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} gnuplot{a} gnuplot-data{a} gnuplot-qt{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} isa-support{a} libabsl20220623{a} libaom3{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libargon2-1{a} libatk-bridge2.0-0{a} libatk1.0-0{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif15{a} libbrotli1{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcolord2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcryptsetup12{a} libcups2{a} libdatrie1{a} libdav1d6{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevmapper1.02.1{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libepoxy0{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libfdisk1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd3{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgtk-3-0{a} libgtk-3-common{a} libgudev-1.0-0{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libinput-bin{a} libinput10{a} libip4tc2{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c5{a} libkmod2{a} libkpathsea6{a} liblcms2-2{a} liblerc4{a} libllvm15{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1{a} libmd4c0{a} libmtdev1{a} libnotify4{a} libnuma1{a} libopenjp2-7{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproc2-0{a} libptexenc1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5gui5{a} libqt5network5{a} libqt5printsupport5{a} libqt5svg5{a} libqt5widgets5{a} librav1e0{a} libreadline8{a} libsensors-config{a} libsensors5{a} libsimde-dev{a} libsm6{a} libsub-override-perl{a} libsynctex2{a} libsystemd-shared{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libwxbase3.2-1{a} libwxgtk3.2-1{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libx265-199{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} sse2-support{a} systemd{a} systemd-sysv{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-lang-greek{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-science{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: at-spi2-core ca-certificates chrony curl default-jre dvisvgm fonts-droid-fallback javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libgtk-3-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libnss-systemd librsvg2-common libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern lynx ntpsec openntpd ps2eps psmisc qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 ruby systemd-timesyncd tex-gyre texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 289 newly installed, 0 to remove and 0 not upgraded. Need to get 339 MB of archives. After unpacking 1075 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libargon2-1 i386 0~20171227-0.3 [24.1 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 dmsetup i386 2:1.02.185-2 [77.2 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libdevmapper1.02.1 i386 2:1.02.185-2 [129 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 libjson-c5 i386 0.16-2 [46.4 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 libcryptsetup12 i386 2:2.6.1-3~deb12u1 [256 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libfdisk1 i386 2.38.1-5+b1 [212 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libkmod2 i386 30+20221128-1 [62.8 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libapparmor1 i386 3.0.8-3 [42.2 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libip4tc2 i386 1.8.9-2 [19.8 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libsystemd-shared i386 252.6-1 [1753 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 systemd i386 252.6-1 [3025 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 systemd-sysv i386 252.6-1 [41.5 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libdbus-1-3 i386 1.14.6-1 [213 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 dbus-bin i386 1.14.6-1 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 dbus-session-bus-common all 1.14.6-1 [76.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 dbus-daemon i386 1.14.6-1 [192 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dbus-system-bus-common all 1.14.6-1 [77.7 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 dbus i386 1.14.6-1 [97.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 poppler-data all 0.4.12-1 [1601 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 30 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 isa-support i386 15 [9692 B] Get: 32 http://deb.debian.org/debian bookworm/main i386 sse2-support i386 15 [3320 B] Get: 33 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libpam-systemd i386 252.6-1 [231 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 shared-mime-info i386 2.2-1 [730 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libgdk-pixbuf-2.0-0 i386 2.42.10+dfsg-1+b1 [147 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 gtk-update-icon-cache i386 3.24.37-2 [43.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 adwaita-icon-theme all 43-1 [5124 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 at-spi2-common all 2.46.0-5 [162 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 cython3 i386 0.29.32-2+b1 [1297 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 d-shlibs all 0.104 [18.6 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 dbus-user-session i386 1.14.6-1 [76.5 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libdconf1 i386 0.40.0-4 [42.9 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 dconf-service i386 0.40.0-4 [34.3 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 dconf-gsettings-backend i386 0.40.0-4 [29.8 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 81 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 83 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-2 [131 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-4 [410 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libfontenc1 i386 1:1.1.4-1 [24.5 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 100 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 101 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 fonts-gfs-baskerville all 1.1-6 [43.7 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 fonts-gfs-porson all 1.1-7 [33.8 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 fonts-lmodern all 2.005-1 [4540 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libgs-common all 10.0.0~dfsg-11 [148 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libgs10-common all 10.0.0~dfsg-11 [586 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libavahi-common-data i386 0.8-10 [107 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libavahi-common3 i386 0.8-10 [43.5 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libavahi-client3 i386 0.8-10 [47.6 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libcups2 i386 2.4.2-3 [261 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libidn12 i386 1.41-1 [85.3 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 libijs-0.35 i386 0.35-15 [16.9 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 libjbig2dec0 i386 0.19-3 [70.0 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-1+b1 [196 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 libgs10 i386 10.0.0~dfsg-11 [2606 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 ghostscript i386 10.0.0~dfsg-11 [56.7 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 gnuplot-data all 5.4.4+dfsg1-2 [72.1 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 131 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 libaom3 i386 3.6.0-1 [1895 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 libdav1d6 i386 1.0.0-2 [316 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 libabsl20220623 i386 20220623.1-1 [444 kB] Get: 140 http://deb.debian.org/debian bookworm/main i386 libgav1-1 i386 0.18.0-1+b1 [307 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 librav1e0 i386 0.5.1-6 [615 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 libyuv0 i386 0.0~git20230123.b2528b0-1 [108 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 libavif15 i386 0.11.1-1 [101 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 libde265-0 i386 1.0.11-1 [193 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 libnuma1 i386 2.0.16-1 [22.7 kB] Get: 146 http://deb.debian.org/debian bookworm/main i386 libx265-199 i386 3.5-2+b1 [687 kB] Get: 147 http://deb.debian.org/debian bookworm/main i386 libheif1 i386 1.15.1-1 [230 kB] Get: 148 http://deb.debian.org/debian bookworm/main i386 libxpm4 i386 1:3.5.12-1.1 [50.0 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 libgd3 i386 2.3.3-9 [129 kB] Get: 150 http://deb.debian.org/debian bookworm/main i386 liblua5.4-0 i386 5.4.4-3 [159 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 152 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 154 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB] Get: 155 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB] Get: 156 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB] Get: 157 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB] Get: 158 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB] Get: 160 http://deb.debian.org/debian bookworm/main i386 libdouble-conversion3 i386 3.2.1-1 [45.7 kB] Get: 161 http://deb.debian.org/debian bookworm/main i386 libpcre2-16-0 i386 10.42-1 [243 kB] Get: 162 http://deb.debian.org/debian bookworm/main i386 libqt5core5a i386 5.15.8+dfsg-3 [2654 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 libdrm-common all 2.4.114-1 [7112 B] Get: 164 http://deb.debian.org/debian bookworm/main i386 libdrm2 i386 2.4.114-1+b1 [40.8 kB] Get: 165 http://deb.debian.org/debian bookworm/main i386 libglvnd0 i386 1.6.0-1 [42.7 kB] Get: 166 http://deb.debian.org/debian bookworm/main i386 libwayland-server0 i386 1.21.0-1 [37.4 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 libgbm1 i386 22.3.6-1+deb12u1 [39.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main i386 libglapi-mesa i386 22.3.6-1+deb12u1 [35.6 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 libwayland-client0 i386 1.21.0-1 [29.0 kB] Get: 170 http://deb.debian.org/debian bookworm/main i386 libx11-xcb1 i386 2:1.8.4-2 [192 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 libxcb-dri2-0 i386 1.15-1 [107 kB] Get: 172 http://deb.debian.org/debian bookworm/main i386 libxcb-dri3-0 i386 1.15-1 [107 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 libxcb-present0 i386 1.15-1 [106 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 libxcb-randr0 i386 1.15-1 [118 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 libxcb-sync1 i386 1.15-1 [109 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 libxcb-xfixes0 i386 1.15-1 [110 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 178 http://deb.debian.org/debian bookworm/main i386 libegl-mesa0 i386 22.3.6-1+deb12u1 [124 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 libegl1 i386 1.6.0-1 [35.6 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 libxcb-glx0 i386 1.15-1 [124 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 libxfixes3 i386 1:6.0.0-2 [23.0 kB] Get: 182 http://deb.debian.org/debian bookworm/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 183 http://deb.debian.org/debian bookworm/main i386 libdrm-amdgpu1 i386 2.4.114-1+b1 [24.1 kB] Get: 184 http://deb.debian.org/debian bookworm/main i386 libpciaccess0 i386 0.17-2 [53.4 kB] Get: 185 http://deb.debian.org/debian bookworm/main i386 libdrm-intel1 i386 2.4.114-1+b1 [67.9 kB] Get: 186 http://deb.debian.org/debian bookworm/main i386 libdrm-nouveau2 i386 2.4.114-1+b1 [20.7 kB] Get: 187 http://deb.debian.org/debian bookworm/main i386 libdrm-radeon1 i386 2.4.114-1+b1 [22.8 kB] Get: 188 http://deb.debian.org/debian bookworm/main i386 libz3-4 i386 4.8.12-3.1 [7853 kB] Get: 189 http://deb.debian.org/debian bookworm/main i386 libllvm15 i386 1:15.0.6-4+b1 [26.5 MB] Get: 190 http://deb.debian.org/debian bookworm/main i386 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 191 http://deb.debian.org/debian bookworm/main i386 libsensors5 i386 1:3.6.0-7.1 [35.1 kB] Get: 192 http://deb.debian.org/debian bookworm/main i386 libgl1-mesa-dri i386 22.3.6-1+deb12u1 [7417 kB] Get: 193 http://deb.debian.org/debian bookworm/main i386 libglx-mesa0 i386 22.3.6-1+deb12u1 [156 kB] Get: 194 http://deb.debian.org/debian bookworm/main i386 libglx0 i386 1.6.0-1 [36.6 kB] Get: 195 http://deb.debian.org/debian bookworm/main i386 libgl1 i386 1.6.0-1 [82.1 kB] Get: 196 http://deb.debian.org/debian bookworm/main i386 libevdev2 i386 1.13.0+dfsg-1 [32.4 kB] Get: 197 http://deb.debian.org/debian bookworm/main i386 libmtdev1 i386 1.1.6-1 [23.5 kB] Get: 198 http://deb.debian.org/debian bookworm/main i386 libgudev-1.0-0 i386 237-2 [15.7 kB] Get: 199 http://deb.debian.org/debian bookworm/main i386 libwacom-common all 2.6.0-1 [58.4 kB] Get: 200 http://deb.debian.org/debian bookworm/main i386 libwacom9 i386 2.6.0-1 [23.1 kB] Get: 201 http://deb.debian.org/debian bookworm/main i386 libinput-bin i386 1.22.1-1 [23.5 kB] Get: 202 http://deb.debian.org/debian bookworm/main i386 libinput10 i386 1.22.1-1 [140 kB] Get: 203 http://deb.debian.org/debian bookworm/main i386 libmd4c0 i386 0.4.8-1 [44.9 kB] Get: 204 http://deb.debian.org/debian bookworm/main i386 libqt5dbus5 i386 5.15.8+dfsg-3 [234 kB] Get: 205 http://deb.debian.org/debian bookworm/main i386 libqt5network5 i386 5.15.8+dfsg-3 [764 kB] Get: 206 http://deb.debian.org/debian bookworm/main i386 libxcb-icccm4 i386 0.4.1-1.1 [28.1 kB] Get: 207 http://deb.debian.org/debian bookworm/main i386 libxcb-util1 i386 0.4.0-1+b1 [23.6 kB] Get: 208 http://deb.debian.org/debian bookworm/main i386 libxcb-image0 i386 0.4.0-2 [23.4 kB] Get: 209 http://deb.debian.org/debian bookworm/main i386 libxcb-keysyms1 i386 0.4.0-1+b2 [16.7 kB] Get: 210 http://deb.debian.org/debian bookworm/main i386 libxcb-render-util0 i386 0.3.9-1+b1 [18.7 kB] Get: 211 http://deb.debian.org/debian bookworm/main i386 libxcb-shape0 i386 1.15-1 [106 kB] Get: 212 http://deb.debian.org/debian bookworm/main i386 libxcb-xinerama0 i386 1.15-1 [105 kB] Get: 213 http://deb.debian.org/debian bookworm/main i386 libxcb-xinput0 i386 1.15-1 [134 kB] Get: 214 http://deb.debian.org/debian bookworm/main i386 libxcb-xkb1 i386 1.15-1 [131 kB] Get: 215 http://deb.debian.org/debian bookworm/main i386 xkb-data all 2.35.1-1 [764 kB] Get: 216 http://deb.debian.org/debian bookworm/main i386 libxkbcommon0 i386 1.5.0-1 [112 kB] Get: 217 http://deb.debian.org/debian bookworm/main i386 libxkbcommon-x11-0 i386 1.5.0-1 [16.5 kB] Get: 218 http://deb.debian.org/debian bookworm/main i386 libqt5gui5 i386 5.15.8+dfsg-3 [5894 kB] Get: 219 http://deb.debian.org/debian bookworm/main i386 libqt5widgets5 i386 5.15.8+dfsg-3 [2659 kB] Get: 220 http://deb.debian.org/debian bookworm/main i386 libqt5printsupport5 i386 5.15.8+dfsg-3 [218 kB] Get: 221 http://deb.debian.org/debian bookworm/main i386 libqt5svg5 i386 5.15.8-2 [150 kB] Get: 222 http://deb.debian.org/debian bookworm/main i386 libpcre2-32-0 i386 10.42-1 [232 kB] Get: 223 http://deb.debian.org/debian bookworm/main i386 libwxbase3.2-1 i386 3.2.2+dfsg-2 [1007 kB] Get: 224 http://deb.debian.org/debian bookworm/main i386 libatk1.0-0 i386 2.46.0-5 [49.4 kB] Get: 225 http://deb.debian.org/debian bookworm/main i386 libxi6 i386 2:1.8-1+b1 [86.2 kB] Get: 226 http://deb.debian.org/debian bookworm/main i386 libatspi2.0-0 i386 2.46.0-5 [79.1 kB] Get: 227 http://deb.debian.org/debian bookworm/main i386 libatk-bridge2.0-0 i386 2.46.0-5 [69.8 kB] Get: 228 http://deb.debian.org/debian bookworm/main i386 libcairo-gobject2 i386 1.16.0-7 [111 kB] Get: 229 http://deb.debian.org/debian bookworm/main i386 libcolord2 i386 1.4.6-2.2 [144 kB] Get: 230 http://deb.debian.org/debian bookworm/main i386 libepoxy0 i386 1.5.10-1 [198 kB] Get: 231 http://deb.debian.org/debian bookworm/main i386 libwayland-cursor0 i386 1.21.0-1 [15.0 kB] Get: 232 http://deb.debian.org/debian bookworm/main i386 libwayland-egl1 i386 1.21.0-1 [8740 B] Get: 233 http://deb.debian.org/debian bookworm/main i386 libxcomposite1 i386 1:0.4.5-1 [16.9 kB] Get: 234 http://deb.debian.org/debian bookworm/main i386 libxcursor1 i386 1:1.2.1-1 [42.4 kB] Get: 235 http://deb.debian.org/debian bookworm/main i386 libxdamage1 i386 1:1.1.6-1 [15.3 kB] Get: 236 http://deb.debian.org/debian bookworm/main i386 libxinerama1 i386 2:1.1.4-3 [18.1 kB] Get: 237 http://deb.debian.org/debian bookworm/main i386 libxrandr2 i386 2:1.5.2-2+b1 [40.8 kB] Get: 238 http://deb.debian.org/debian bookworm/main i386 libgtk-3-common all 3.24.37-2 [3891 kB] Get: 239 http://deb.debian.org/debian bookworm/main i386 libgtk-3-0 i386 3.24.37-2 [3045 kB] Get: 240 http://deb.debian.org/debian bookworm/main i386 libnotify4 i386 0.8.1-1 [30.9 kB] Get: 241 http://deb.debian.org/debian bookworm/main i386 libxtst6 i386 2:1.2.3-1.1 [28.6 kB] Get: 242 http://deb.debian.org/debian bookworm/main i386 libwxgtk3.2-1 i386 3.2.2+dfsg-2 [4777 kB] Get: 243 http://deb.debian.org/debian bookworm/main i386 gnuplot-qt i386 5.4.4+dfsg1-2+b2 [1085 kB] Get: 244 http://deb.debian.org/debian bookworm/main i386 gnuplot all 5.4.4+dfsg1-2 [5844 B] Get: 245 http://deb.debian.org/debian bookworm/main i386 libapache-pom-java all 29-2 [5276 B] Get: 246 http://deb.debian.org/debian bookworm/main i386 libcommons-parent-java all 56-1 [10.8 kB] Get: 247 http://deb.debian.org/debian bookworm/main i386 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 248 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 249 http://deb.debian.org/debian bookworm/main i386 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 250 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 251 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 252 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 253 http://deb.debian.org/debian bookworm/main i386 libkpathsea6 i386 2022.20220321.62855-5 [155 kB] Get: 254 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 255 http://deb.debian.org/debian bookworm/main i386 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 256 http://deb.debian.org/debian bookworm/main i386 libptexenc1 i386 2022.20220321.62855-5 [44.6 kB] Get: 257 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 258 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 259 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 260 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 261 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B] Get: 262 http://deb.debian.org/debian bookworm/main i386 libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 263 http://deb.debian.org/debian bookworm/main i386 libsynctex2 i386 2022.20220321.62855-5 [62.2 kB] Get: 264 http://deb.debian.org/debian bookworm/main i386 libteckit0 i386 2.5.11+ds1-1+b1 [282 kB] Get: 265 http://deb.debian.org/debian bookworm/main i386 libtexlua53-5 i386 2022.20220321.62855-5 [126 kB] Get: 266 http://deb.debian.org/debian bookworm/main i386 libtexluajit2 i386 2022.20220321.62855-5 [262 kB] Get: 267 http://deb.debian.org/debian bookworm/main i386 libxmu6 i386 2:1.1.3-3 [62.5 kB] Get: 268 http://deb.debian.org/debian bookworm/main i386 libxaw7 i386 2:1.0.14-1 [209 kB] Get: 269 http://deb.debian.org/debian bookworm/main i386 libzzip-0-13 i386 0.13.72+dfsg.1-1.1 [60.1 kB] Get: 270 http://deb.debian.org/debian bookworm/main i386 tex-common all 6.18 [32.5 kB] Get: 271 http://deb.debian.org/debian bookworm/main i386 preview-latex-style all 12.2-1 [201 kB] Get: 272 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 273 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 274 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 275 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B] Get: 276 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 277 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Get: 278 http://deb.debian.org/debian bookworm/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 279 http://deb.debian.org/debian bookworm/main i386 texlive-binaries i386 2022.20220321.62855-5 [10.6 MB] Get: 280 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 281 http://deb.debian.org/debian bookworm/main i386 texlive-base all 2022.20230122-3 [21.9 MB] Get: 282 http://deb.debian.org/debian bookworm/main i386 texlive-font-utils all 2022.20230122-3 [4130 kB] Get: 283 http://deb.debian.org/debian bookworm/main i386 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 284 http://deb.debian.org/debian bookworm/main i386 texlive-lang-greek all 2022.20230122-1 [78.1 MB] Get: 285 http://deb.debian.org/debian bookworm/main i386 texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 286 http://deb.debian.org/debian bookworm/main i386 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 287 http://deb.debian.org/debian bookworm/main i386 texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 288 http://deb.debian.org/debian bookworm/main i386 texlive-latex-extra all 2022.20230122-3 [19.2 MB] Get: 289 http://deb.debian.org/debian bookworm/main i386 texlive-science all 2022.20230122-3 [3722 kB] Fetched 339 MB in 7s (45.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libargon2-1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-libargon2-1_0~20171227-0.3_i386.deb ... Unpacking libargon2-1:i386 (0~20171227-0.3) ... Selecting previously unselected package dmsetup. Preparing to unpack .../01-dmsetup_2%3a1.02.185-2_i386.deb ... Unpacking dmsetup (2:1.02.185-2) ... Selecting previously unselected package libdevmapper1.02.1:i386. Preparing to unpack .../02-libdevmapper1.02.1_2%3a1.02.185-2_i386.deb ... Unpacking libdevmapper1.02.1:i386 (2:1.02.185-2) ... Selecting previously unselected package libjson-c5:i386. Preparing to unpack .../03-libjson-c5_0.16-2_i386.deb ... Unpacking libjson-c5:i386 (0.16-2) ... Selecting previously unselected package libcryptsetup12:i386. Preparing to unpack .../04-libcryptsetup12_2%3a2.6.1-3~deb12u1_i386.deb ... Unpacking libcryptsetup12:i386 (2:2.6.1-3~deb12u1) ... Selecting previously unselected package libfdisk1:i386. Preparing to unpack .../05-libfdisk1_2.38.1-5+b1_i386.deb ... Unpacking libfdisk1:i386 (2.38.1-5+b1) ... Selecting previously unselected package libkmod2:i386. Preparing to unpack .../06-libkmod2_30+20221128-1_i386.deb ... Unpacking libkmod2:i386 (30+20221128-1) ... Selecting previously unselected package libapparmor1:i386. Preparing to unpack .../07-libapparmor1_3.0.8-3_i386.deb ... Unpacking libapparmor1:i386 (3.0.8-3) ... Selecting previously unselected package libip4tc2:i386. Preparing to unpack .../08-libip4tc2_1.8.9-2_i386.deb ... Unpacking libip4tc2:i386 (1.8.9-2) ... Selecting previously unselected package libsystemd-shared:i386. Preparing to unpack .../09-libsystemd-shared_252.6-1_i386.deb ... Unpacking libsystemd-shared:i386 (252.6-1) ... Selecting previously unselected package systemd. Preparing to unpack .../10-systemd_252.6-1_i386.deb ... Unpacking systemd (252.6-1) ... Setting up libargon2-1:i386 (0~20171227-0.3) ... Setting up libjson-c5:i386 (0.16-2) ... Setting up libfdisk1:i386 (2.38.1-5+b1) ... Setting up libkmod2:i386 (30+20221128-1) ... Setting up libapparmor1:i386 (3.0.8-3) ... Setting up libip4tc2:i386 (1.8.9-2) ... Setting up libsystemd-shared:i386 (252.6-1) ... Setting up libdevmapper1.02.1:i386 (2:1.02.185-2) ... Setting up libcryptsetup12:i386 (2:2.6.1-3~deb12u1) ... Setting up systemd (252.6-1) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. Setting up dmsetup (2:1.02.185-2) ... Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20519 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_252.6-1_i386.deb ... Unpacking systemd-sysv (252.6-1) ... Selecting previously unselected package libdbus-1-3:i386. Preparing to unpack .../01-libdbus-1-3_1.14.6-1_i386.deb ... Unpacking libdbus-1-3:i386 (1.14.6-1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../02-dbus-bin_1.14.6-1_i386.deb ... Unpacking dbus-bin (1.14.6-1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../03-dbus-session-bus-common_1.14.6-1_all.deb ... Unpacking dbus-session-bus-common (1.14.6-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../04-libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.14.6-1_i386.deb ... Unpacking dbus-daemon (1.14.6-1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.14.6-1_all.deb ... Unpacking dbus-system-bus-common (1.14.6-1) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.14.6-1_i386.deb ... Unpacking dbus (1.14.6-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../08-poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../09-libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../10-python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21459 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21893 files and directories currently installed.) Preparing to unpack .../python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package isa-support:i386. Preparing to unpack .../isa-support_15_i386.deb ... Unpacking isa-support:i386 (15) ... Setting up isa-support:i386 (15) ... Selecting previously unselected package sse2-support. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21933 files and directories currently installed.) Preparing to unpack .../000-sse2-support_15_i386.deb ... Unpacking sse2-support (15) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../005-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package libpam-systemd:i386. Preparing to unpack .../010-libpam-systemd_252.6-1_i386.deb ... Unpacking libpam-systemd:i386 (252.6-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../012-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package hicolor-icon-theme. 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Setting up libheif1:i386 (1.15.1-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libpaper-utils (1.1.29) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer. Setting up libcairo2:i386 (1.16.0-7) ... Setting up libqt5network5:i386 (5.15.8+dfsg-3) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up dbus-user-session (1.14.6-1) ... Setting up libegl-mesa0:i386 (22.3.6-1+deb12u1) ... Setting up adwaita-icon-theme (43-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:i386 (1:6.0.0-2) ... Setting up libnotify4:i386 (0.8.1-1) ... 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Setting up libatspi2.0-0:i386 (2.46.0-5) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up libatk-bridge2.0-0:i386 (2.46.0-5) ... Setting up libgl1:i386 (1.6.0-1) ... Setting up libpython3.11-dev:i386 (3.11.2-6) ... Setting up cython3 (0.29.32-2+b1) ... Setting up texlive-binaries (2022.20220321.62855-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python3-lib2to3 (3.11.2-2) ... Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up libgs10-common (10.0.0~dfsg-11) ... Setting up libpython3-dev:i386 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up dconf-gsettings-backend:i386 (0.40.0-4) ... Setting up python3.11-dev (3.11.2-6) ... Setting up libqt5gui5:i386 (5.15.8+dfsg-3) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libqt5widgets5:i386 (5.15.8+dfsg-3) ... Setting up texlive-lang-greek (2022.20230122-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/minimap2-2.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minimap2_2.24+dfsg-3_source.changes dpkg-buildpackage: info: source package minimap2 dpkg-buildpackage: info: source version 2.24+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/minimap2-2.24+dfsg' dh_auto_clean make -j8 clean make[2]: Entering directory '/build/minimap2-2.24+dfsg' rm -fr gmon.out *.o a.out minimap2 sdust minimap2-lite *~ *.a *.dSYM build dist mappy*.so mappy.c python/mappy.c mappy.egg* make[2]: Leaving directory '/build/minimap2-2.24+dfsg' cd tex && make clean make[2]: Entering directory '/build/minimap2-2.24+dfsg/tex' rm -fr *.toc *.aux *.bbl *.blg *.idx *.log *.out *~ minimap2.pdf make[2]: Leaving directory '/build/minimap2-2.24+dfsg/tex' rm -f MT-human.mmi rm -f tex/minimap2.aux tex/minimap2.bbl tex/minimap2.blg tex/minimap2.log tex/minimap2.out tex/minimap2.pdf rm -f libminimap2.a make[1]: Leaving directory '/build/minimap2-2.24+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/minimap2-2.24+dfsg' dh_auto_build -- make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/minimap2-2.24+dfsg' cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC main.c -o main.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC kthread.c -o kthread.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC kalloc.c -o kalloc.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC misc.c -o misc.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC bseq.c -o bseq.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC sketch.c -o sketch.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC sdust.c -o sdust.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC options.c -o options.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC index.c -o index.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC lchain.c -o lchain.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC align.c -o align.o index.c: In function 'mm_idx_load': index.c:519:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 519 | fread(&l, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~ index.c:522:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 522 | fread(s->name, 1, l, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:525:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 525 | fread(&s->len, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:535:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 535 | fread(&b->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:537:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 537 | fread(b->p, 8, b->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:538:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 538 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:545:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 545 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ index.c:553:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 553 | fread(mi->S, 4, (sum_len + 7) / 8, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC hit.c -o hit.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC seed.c -o seed.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC map.c -o map.o map.c: In function 'mm_map_frag': map.c:370:60: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 370 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d map.c:370:70: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 370 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d map.c:370:82: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 370 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC format.c -o format.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC pe.c -o pe.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC esterr.c -o esterr.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC splitidx.c -o splitidx.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_ll_sse.c -o ksw2_ll_sse.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_extz2_sse.c -o ksw2_extz2_sse41.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_extd2_sse.c -o ksw2_extd2_sse41.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_exts2_sse.c -o ksw2_exts2_sse41.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_extz2_sse.c -o ksw2_extz2_sse2.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_extd2_sse.c -o ksw2_extd2_sse2.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_exts2_sse.c -o ksw2_exts2_sse2.o cc -c -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_dispatch.c -o ksw2_dispatch.o rm -f libminimap2.a ar csrD libminimap2.a kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o lchain.o align.o hit.o seed.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o cc -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat main.o -o minimap2 -L. -lminimap2 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/minimap2-2.24+dfsg' cd tex && make make[2]: Entering directory '/build/minimap2-2.24+dfsg/tex' gnuplot roc.gp epstopdf --outfile roc-color.pdf roc-color.eps Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories pdflatex minimap2; 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This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: minimap2.aux The style file: apalike.bst Database file #1: minimap2.bib This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./minimap2.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (./bioinfo.cls Document Class: bioinfo 2003/02/08 0.1 (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/crop/crop.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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Package natbib Warning: Citation `Dobin:2013kx' on page 4 undefined on input li ne 592. Underfull \hbox (badness 4634) in paragraph at lines 598--610 \OT1/ptm/m/n/9 Direct RNA-seq dataset ([]http://bit.ly/na12878ont[]). Minimap2 Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [4 <./roc-color.pdf>] Package natbib Warning: Citation `Langmead:2012fk' on page 5 undefined on input line 637. Package natbib Warning: Citation `Zaharia:2011aa' on page 5 undefined on input line 638. Package natbib Warning: Citation `Depristo:2011vn' on page 5 undefined on input line 649. Package natbib Warning: Citation `Li223297' on page 5 undefined on input line 6 53. Package natbib Warning: Citation `Marcais:2018aa' on page 5 undefined on input line 664. 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(./minimap2.aux Package natbib Warning: Citation(s) may have changed. (natbib) Rerun to get citations correct. ) LaTeX Font Warning: Size substitutions with differences (Font) up to 0.5pt have occurred. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on minimap2.pdf (6 pages, 265621 bytes). Transcript written on minimap2.log. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./minimap2.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (./bioinfo.cls Document Class: bioinfo 2003/02/08 0.1 (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/crop/crop.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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LaTeX Font Warning: Font shape `OML/cmm/m/it' in size <6.5> not available (Font) size <6> substituted on input line 58. LaTeX Font Warning: Font shape `OMS/cmsy/m/n' in size <6.5> not available (Font) size <6> substituted on input line 58. Underfull \hbox (badness 1478) in paragraph at lines 71--80 \OT1/ptm/m/n/9 minor modifications could enable the base algorithm to map Underfull \hbox (badness 1019) in paragraph at lines 71--80 \OT1/ptm/m/n/9 mRNAs as well. Minimap2 becomes a first RNA-seq aligner [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 204. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 204. Underfull \vbox (badness 10000) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [2] Underfull \hbox (badness 1769) in paragraph at lines 382--386 \OT1/ptm/m/n/8 performs local alignment between the two subsequences involved i n Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active [3] LaTeX Font Warning: Font shape `OT1/cmtt/m/n' in size <6.5> not available (Font) size <6> substituted on input line 492. Overfull \hbox (9.0pt too wide) in paragraph at lines 496--515 [][] Underfull \hbox (badness 1248) in paragraph at lines 518--535 []\OT1/ptm/m/n/9 2016[]), Kart (v2.2.5; []Lin and Hsu[], []2017[]), minialign ( v0.5.3; Overfull \hbox (3.90332pt too wide) in paragraph at lines 518--535 []\OT1/ptm/m/n/9 https://github.com/ocxtal/minialign[]) and NGMLR (v0.2.5; []Se dlazeck Underfull \hbox (badness 2189) in paragraph at lines 590--597 \OT1/ptm/m/n/9 GMAP (v2017-06-20; []Wu and Watanabe[], []2005[]), minimap2, Underfull \hbox (badness 1424) in paragraph at lines 590--597 \OT1/ptm/m/n/9 et al.[], []2013[]). In general, minimap2 is more consistent wit h Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [4 <./roc-color.pdf>] Underfull \hbox (badness 4634) in paragraph at lines 598--610 \OT1/ptm/m/n/9 Direct RNA-seq dataset ([]http://bit.ly/na12878ont[]). Minimap2 Underfull \hbox (badness 2096) in paragraph at lines 647--659 \OT1/ptm/m/n/9 v3.5 ([]Depristo et al.[], []2011[]). This run was sequenced fro m Underfull \hbox (badness 1454) in paragraph at lines 662--671 \OT1/ptm/m/n/9 the paftools.js script from the minimap2 package, we called Underfull \hbox (badness 1137) in paragraph at lines 662--671 \OT1/ptm/m/n/9 regions. The transition-to-transversion ratio (ts/tv) is 2.01. I n Underfull \hbox (badness 2027) in paragraph at lines 687--700 []\OT1/ptm/m/n/9 The capability of minimap2 comes from a fast base-level Underfull \hbox (badness 1226) in paragraph at lines 714--719 \OT1/ptm/m/n/9 releasing their masterpiece and insightful notes before formal Package hyperref Warning: Difference (3) between bookmark levels is greater (hyperref) than one, level fixed on input line 720. (./minimap2.bbl Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active [5] Underfull \hbox (badness 1953) in paragraph at lines 120--123 []\OT1/ptm/m/n/7 Li, H. et al. (2009). The Sequence Alignment/Map format and S AMtools. Underfull \vbox (badness 10000) has occurred while \output is active) Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [6] (./minimap2.aux) LaTeX Font Warning: Size substitutions with differences (Font) up to 0.5pt have occurred. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on minimap2.pdf (6 pages, 269239 bytes). Transcript written on minimap2.log. make[2]: Leaving directory '/build/minimap2-2.24+dfsg/tex' dh_auto_build --buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_ext cythoning python/mappy.pyx to python/mappy.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/minimap2-2.24+dfsg/python/mappy.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'mappy' extension creating build creating build/temp.linux-i386-cpython-311 creating build/temp.linux-i386-cpython-311/python i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c align.c -o build/temp.linux-i386-cpython-311/align.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP align.c: In function 'mm_get_hplen_back': align.c:349:43: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 349 | if (mm_seq4_get(mi->S, i) != c) break; | ^~ align.c: In function 'mm_seed_ext_score': align.c:536:56: warning: operand of '?:' changes signedness from 'int' to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare] 536 | re = re + ext_len < (int32_t)mi->seq[rid].len? re + ext_len : mi->seq[rid].len; | ^~~~~~~~~~~~ align.c: In function 'mm_align1': align.c:630:59: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare] 630 | re0 = re + l < (int32_t)mi->seq[rid].len? re + l : mi->seq[rid].len; | ^~~~~~ align.c:682:65: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare] 682 | l = l < (int32_t)mi->seq[rid].len - re? l : mi->seq[rid].len - re; | ^ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c bseq.c -o build/temp.linux-i386-cpython-311/bseq.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c esterr.c -o build/temp.linux-i386-cpython-311/esterr.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c format.c -o build/temp.linux-i386-cpython-311/format.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c hit.c -o build/temp.linux-i386-cpython-311/hit.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP hit.c: In function 'mm_hit_sort': hit.c:190:55: warning: variable 'no_cigar' set but not used [-Wunused-but-set-variable] 190 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0; | ^~~~~~~~ hit.c:190:40: warning: variable 'has_cigar' set but not used [-Wunused-but-set-variable] 190 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0; | ^~~~~~~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c index.c -o build/temp.linux-i386-cpython-311/index.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP index.c: In function 'mm_idx_name2id': index.c:149:32: warning: operand of '?:' changes signedness from 'int' to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare] 149 | return k == kh_end(h)? -1 : kh_val(h, k); | ^~ index.c: In function 'mm_idx_gen': index.c:381:70: warning: operand of '?:' changes signedness from 'int' to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 381 | pl.mini_batch_size = (uint64_t)mini_batch_size < batch_size? mini_batch_size : batch_size; | ^~~~~~~~~~~~~~~ index.c: In function 'mm_idx_dump': index.c:482:23: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 482 | for (i = 0; i < 1<b; ++i) { | ^ index.c: In function 'mm_idx_load': index.c:530:23: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 530 | for (i = 0; i < 1<b; ++i) { | ^ index.c: In function 'mm_idx_bed_read': index.c:747:23: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 747 | for (i = 0; i < mi->n_seq; ++i) // TODO: eliminate redundant intervals | ^ index.c: In function 'mm_idx_bed_junc': index.c:757:42: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 757 | if (mi->I == 0 || ctg < 0 || ctg >= mi->n_seq) return -1; | ^~ index.c: In function 'mm_idx_load': index.c:519:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 519 | fread(&l, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~ index.c:522:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 522 | fread(s->name, 1, l, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:525:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 525 | fread(&s->len, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:535:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 535 | fread(&b->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:537:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 537 | fread(b->p, 8, b->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:538:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 538 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:545:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 545 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ index.c:553:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 553 | fread(mi->S, 4, (sum_len + 7) / 8, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c kalloc.c -o build/temp.linux-i386-cpython-311/kalloc.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c ksw2_extd2_sse.c -o build/temp.linux-i386-cpython-311/ksw2_extd2_sse.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP ksw2_extd2_sse.c:6: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined 6 | #define SIMDE_ENABLE_NATIVE_ALIASES | : note: this is the location of the previous definition i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c ksw2_exts2_sse.c -o build/temp.linux-i386-cpython-311/ksw2_exts2_sse.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP ksw2_exts2_sse.c:6: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined 6 | #define SIMDE_ENABLE_NATIVE_ALIASES | : note: this is the location of the previous definition i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c ksw2_extz2_sse.c -o build/temp.linux-i386-cpython-311/ksw2_extz2_sse.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP ksw2_extz2_sse.c:5: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined 5 | #define SIMDE_ENABLE_NATIVE_ALIASES | : note: this is the location of the previous definition i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c ksw2_ll_sse.c -o build/temp.linux-i386-cpython-311/ksw2_ll_sse.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c kthread.c -o build/temp.linux-i386-cpython-311/kthread.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c lchain.c -o build/temp.linux-i386-cpython-311/lchain.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP lchain.c: In function 'mg_chain_bk_end': lchain.c:18:37: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 18 | s = i < 0? z[k].x : (int32_t)z[k].x - f[i]; | ^~~~~~~~~~~~~~~~~~~~~~ lchain.c: In function 'mg_chain_backtrack': lchain.c:51:46: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 51 | sc = i < 0? z[k].x : (int32_t)z[k].x - f[i]; | ^~~~~~~~~~~~~~~~~~~~~~ lchain.c:66:46: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 66 | sc = i < 0? z[k].x : (int32_t)z[k].x - f[i]; | ^~~~~~~~~~~~~~~~~~~~~~ lchain.c: In function 'mg_lchain_dp': lchain.c:190:56: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long long unsigned int'} and 'long long int' [-Wsign-compare] 190 | if (max_ii < 0 || a[i].x - a[max_ii].x > (int64_t)max_dist_x) { | ^ lchain.c:204:57: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long long unsigned int'} and 'long long int' [-Wsign-compare] 204 | if (max_ii < 0 || (a[i].x - a[max_ii].x <= (int64_t)max_dist_x && f[max_ii] < f[i])) | ^~ lchain.c: In function 'mg_lchain_rmq': lchain.c:295:117: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 295 | while (st < i && (a[i].x>>32 != a[st].x>>32 || a[i].x > a[st].x + max_dist || krmq_size(head, root) > cap_rmq_size)) { | ^ lchain.c:304:155: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 304 | while (st_inner < i && (a[i].x>>32 != a[st_inner].x>>32 || a[i].x > a[st_inner].x + max_dist_inner || krmq_size(head, root_inner) > cap_rmq_size)) { | ^ lchain.c:357:34: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'unsigned int' [-Wsign-compare] 357 | if (max_rmq_size < krmq_size(head, root)) max_rmq_size = krmq_size(head, root); | ^ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c map.c -o build/temp.linux-i386-cpython-311/map.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP map.c: In function 'mm_dust_minier': map.c:53:70: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 53 | int ss = s > (int32_t)(dreg[v]>>32)? s : dreg[v]>>32; | ^ map.c:54:64: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'unsigned int' due to unsignedness of other operand [-Wsign-compare] 54 | int ee = e < (int32_t)dreg[v]? e : (uint32_t)dreg[v]; | ^ map.c: In function 'mm_map_frag': map.c:370:60: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 370 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d map.c:370:70: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 370 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d map.c:370:82: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 370 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c misc.c -o build/temp.linux-i386-cpython-311/misc.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c options.c -o build/temp.linux-i386-cpython-311/options.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c pe.c -o build/temp.linux-i386-cpython-311/pe.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c python/mappy.c -o build/temp.linux-i386-cpython-311/python/mappy.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c sdust.c -o build/temp.linux-i386-cpython-311/sdust.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c seed.c -o build/temp.linux-i386-cpython-311/seed.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP seed.c: In function 'mm_seed_mz_flt': seed.c:9:19: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int32_t' {aka 'int'} [-Wsign-compare] 9 | if (mv->n <= q_occ_max || q_occ_frac <= 0.0f || q_occ_max <= 0) return; | ^~ seed.c: In function 'mm_seed_select': seed.c:65:28: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 65 | if (a[i].n > max_occ) ++m; | ^ seed.c:68:38: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 68 | if (i == n || a[i].n <= max_occ) { | ^~ seed.c:71:54: warning: operand of '?:' changes signedness from 'int' to 'unsigned int' due to unsignedness of other operand [-Wsign-compare] 71 | int32_t pe = i == n? len : (uint32_t)a[i].q_pos>>1; | ^~~ seed.c:81:60: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 81 | if (a[j].n < (int32_t)(b[0]>>32)) { // then update the heap | ^ seed.c:90:52: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 90 | if (a[j].n > max_max_occ) | ^ seed.c: In function 'mm_collect_matches': seed.c:109:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 109 | for (i = 0; i < n_m0; ++i) | ^ seed.c:110:36: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 110 | if (m[i].n > max_occ) | ^ seed.c:113:56: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 113 | for (i = 0, n_m = 0, *rep_len = 0, *n_a = 0; i < n_m0; ++i) { | ^ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c sketch.c -o build/temp.linux-i386-cpython-311/sketch.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.11 -c splitidx.c -o build/temp.linux-i386-cpython-311/splitidx.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/minimap2-2.24+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-cpython-311/align.o build/temp.linux-i386-cpython-311/bseq.o build/temp.linux-i386-cpython-311/esterr.o build/temp.linux-i386-cpython-311/format.o build/temp.linux-i386-cpython-311/hit.o build/temp.linux-i386-cpython-311/index.o build/temp.linux-i386-cpython-311/kalloc.o build/temp.linux-i386-cpython-311/ksw2_extd2_sse.o build/temp.linux-i386-cpython-311/ksw2_exts2_sse.o build/temp.linux-i386-cpython-311/ksw2_extz2_sse.o build/temp.linux-i386-cpython-311/ksw2_ll_sse.o build/temp.linux-i386-cpython-311/kthread.o build/temp.linux-i386-cpython-311/lchain.o build/temp.linux-i386-cpython-311/map.o build/temp.linux-i386-cpython-311/misc.o build/temp.linux-i386-cpython-311/options.o build/temp.linux-i386-cpython-311/pe.o build/temp.linux-i386-cpython-311/python/mappy.o build/temp.linux-i386-cpython-311/sdust.o build/temp.linux-i386-cpython-311/seed.o build/temp.linux-i386-cpython-311/sketch.o build/temp.linux-i386-cpython-311/splitidx.o -L/usr/lib/i386-linux-gnu -lz -lm -lpthread -o /build/minimap2-2.24+dfsg/.pybuild/cpython3_3.11/build/mappy.cpython-311-i386-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting python/minimap2.py -> build/scripts-3.11 changing mode of build/scripts-3.11/minimap2.py from 644 to 755 make[1]: Leaving directory '/build/minimap2-2.24+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/minimap2-2.24+dfsg' debian/test_script [M::mm_idx_gen::0.004*1.73] collected minimizers [M::mm_idx_gen::0.006*2.09] sorted minimizers [M::main::0.006*2.09] loaded/built the index for 1 target sequence(s) [M::mm_mapopt_update::0.006*2.02] mid_occ = 10 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1 [M::mm_idx_stat::0.007*1.99] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569 [M::worker_pipeline::0.019*1.38] mapped 1 sequences [M::main] Version: 2.24-r1122 [M::main] CMD: minimap2 -a test/MT-human.fa test/MT-orang.fa [M::main] Real time: 0.021 sec; CPU: 0.028 sec; Peak RSS: 0.005 GB [M::mm_idx_gen::0.004*1.64] collected minimizers [M::mm_idx_gen::0.006*2.05] sorted minimizers [M::main::0.009*1.69] loaded/built the index for 1 target sequence(s) [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1 [M::mm_idx_stat::0.009*1.68] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569 [M::main] Version: 2.24-r1122 [M::main] CMD: minimap2 -d MT-human.mmi test/MT-human.fa [M::main] Real time: 0.010 sec; CPU: 0.016 sec; Peak RSS: 0.004 GB [M::main::0.005*1.17] loaded/built the index for 1 target sequence(s) [M::mm_mapopt_update::0.005*1.16] mid_occ = 10 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1 [M::mm_idx_stat::0.005*1.15] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569 [M::worker_pipeline::0.020*1.11] mapped 1 sequences [M::main] Version: 2.24-r1122 [M::main] CMD: minimap2 -a MT-human.mmi test/MT-orang.fa [M::main] Real time: 0.022 sec; CPU: 0.024 sec; Peak RSS: 0.009 GB rm test.sam make[1]: Leaving directory '/build/minimap2-2.24+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/minimap2-2.24+dfsg' dh_auto_install dh_auto_install --buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/minimap2-2.24+dfsg/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_ext skipping 'python/mappy.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/minimap2-2.24+dfsg/debian/tmp/usr creating /build/minimap2-2.24+dfsg/debian/tmp/usr/lib creating /build/minimap2-2.24+dfsg/debian/tmp/usr/lib/python3.11 creating /build/minimap2-2.24+dfsg/debian/tmp/usr/lib/python3.11/dist-packages copying /build/minimap2-2.24+dfsg/.pybuild/cpython3_3.11/build/mappy.cpython-311-i386-linux-gnu.so -> /build/minimap2-2.24+dfsg/debian/tmp/usr/lib/python3.11/dist-packages running install_egg_info running egg_info creating mappy.egg-info writing mappy.egg-info/PKG-INFO writing dependency_links to mappy.egg-info/dependency_links.txt writing top-level names to mappy.egg-info/top_level.txt writing manifest file 'mappy.egg-info/SOURCES.txt' reading manifest file 'mappy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'sse2neon/emmintrin.h' adding license file 'LICENSE.txt' writing manifest file 'mappy.egg-info/SOURCES.txt' Copying mappy.egg-info to /build/minimap2-2.24+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/mappy-2.24.egg-info Skipping SOURCES.txt running install_scripts creating /build/minimap2-2.24+dfsg/debian/tmp/usr/bin copying build/scripts-3.11/minimap2.py -> /build/minimap2-2.24+dfsg/debian/tmp/usr/bin changing mode of /build/minimap2-2.24+dfsg/debian/tmp/usr/bin/minimap2.py to 755 make[1]: Leaving directory '/build/minimap2-2.24+dfsg' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/minimap2-2.24+dfsg' dh_installman --language=C make[1]: Leaving directory '/build/minimap2-2.24+dfsg' dh_python3 dh_lintian dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/minimap2-2.24+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/minimap2-2.24+dfsg' dh_fixperms dh_missing dh_dwz -a debian/rules override_dh_strip make[1]: Entering directory '/build/minimap2-2.24+dfsg' dh_strip ranlib /build/minimap2-2.24+dfsg/debian/libminimap2-dev/usr/lib/libminimap2.a make[1]: Leaving directory '/build/minimap2-2.24+dfsg' dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libminimap2-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'minimap2' in '../minimap2_2.24+dfsg-3_i386.deb'. dpkg-deb: building package 'minimap2-dbgsym' in '../minimap2-dbgsym_2.24+dfsg-3_i386.deb'. dpkg-deb: building package 'libminimap2-dev' in '../libminimap2-dev_2.24+dfsg-3_i386.deb'. dpkg-deb: building package 'python3-mappy' in '../python3-mappy_2.24+dfsg-3_i386.deb'. dpkg-deb: building package 'python3-mappy-dbgsym' in '../python3-mappy-dbgsym_2.24+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../minimap2_2.24+dfsg-3_i386.buildinfo dpkg-genchanges --build=binary -O../minimap2_2.24+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20116 and its subdirectories I: Current time: Mon Apr 24 03:34:57 -12 2023 I: pbuilder-time-stamp: 1682350497