I: pbuilder: network access will be disabled during build
I: Current time: Tue Jul 16 18:15:55 +14 2024
I: pbuilder-time-stamp: 1721103355
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
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/usr/bin/tar: ./dev/console: time stamp 2025-08-15 13:09:27 is 34109611.133631368 s in the future
/usr/bin/tar: ./dev/urandom: time stamp 2025-08-15 13:09:27 is 34109611.133578095 s in the future
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/usr/bin/tar: ./dev/ptmx: time stamp 2025-08-15 13:09:27 is 34109611.133480149 s in the future
/usr/bin/tar: ./etc/shells: time stamp 2025-08-15 13:09:37 is 34109621.133415863 s in the future
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/usr/bin/tar: ./etc/subuid: time stamp 2025-08-15 13:09:39 is 34109623.133013105 s in the future
/usr/bin/tar: ./etc/perl/Net: time stamp 2025-08-15 13:09:39 is 34109623.132893446 s in the future
/usr/bin/tar: ./etc/group: time stamp 2025-08-15 13:09:38 is 34109622.132842385 s in the future
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/usr/bin/tar: ./etc/pam.d/common-session: time stamp 2025-08-15 13:09:39 is 34109623.13242487 s in the future
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/usr/bin/tar: ./usr/lib/locale/ca_ES@valencia/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.023710244 s in the future
/usr/bin/tar: ./usr/lib/locale/ca_ES@valencia: time stamp 2025-08-15 13:09:52 is 34109629.023670993 s in the future
/usr/bin/tar: ./usr/lib/locale/ht_HT: time stamp 2025-08-15 13:09:52 is 34109629.023631722 s in the future
/usr/bin/tar: ./usr/lib/locale/nan_TW: time stamp 2025-08-15 13:09:52 is 34109629.023592793 s in the future
/usr/bin/tar: ./usr/lib/locale/eu_FR/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.023554551 s in the future
/usr/bin/tar: ./usr/lib/locale/eu_FR: time stamp 2025-08-15 13:09:52 is 34109629.023513598 s in the future
/usr/bin/tar: ./usr/lib/locale/et_EE: time stamp 2025-08-15 13:09:52 is 34109629.023474268 s in the future
/usr/bin/tar: ./usr/lib/locale/mg_MG: time stamp 2025-08-15 13:09:52 is 34109629.023435962 s in the future
/usr/bin/tar: ./usr/lib/locale/aa_ET/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.023396193 s in the future
/usr/bin/tar: ./usr/lib/locale/aa_ET: time stamp 2025-08-15 13:09:52 is 34109629.023357088 s in the future
/usr/bin/tar: ./usr/lib/locale/tcy_IN.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.023316738 s in the future
/usr/bin/tar: ./usr/lib/locale/tcy_IN.utf8: time stamp 2025-08-15 13:09:52 is 34109629.023278383 s in the future
/usr/bin/tar: ./usr/lib/locale/en_IL/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.023238828 s in the future
/usr/bin/tar: ./usr/lib/locale/en_IL: time stamp 2025-08-15 13:09:52 is 34109629.023199565 s in the future
/usr/bin/tar: ./usr/lib/locale/tr_CY.utf8: time stamp 2025-08-15 13:09:52 is 34109629.023160194 s in the future
/usr/bin/tar: ./usr/lib/locale/mhr_RU: time stamp 2025-08-15 13:09:52 is 34109629.02312118 s in the future
/usr/bin/tar: ./usr/lib/locale/fr_CH: time stamp 2025-08-15 13:09:52 is 34109629.02308168 s in the future
/usr/bin/tar: ./usr/lib/locale/ik_CA: time stamp 2025-08-15 13:09:52 is 34109629.023041689 s in the future
/usr/bin/tar: ./usr/lib/locale/bhb_IN.utf8: time stamp 2025-08-15 13:09:52 is 34109629.023002489 s in the future
/usr/bin/tar: ./usr/lib/locale/hsb_DE.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022962002 s in the future
/usr/bin/tar: ./usr/lib/locale/ms_MY/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.022923186 s in the future
/usr/bin/tar: ./usr/lib/locale/ms_MY: time stamp 2025-08-15 13:09:52 is 34109629.022776353 s in the future
/usr/bin/tar: ./usr/lib/locale/he_IL.utf8: time stamp 2025-08-15 13:09:52 is 34109629.02271882 s in the future
/usr/bin/tar: ./usr/lib/locale/en_HK/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.022682214 s in the future
/usr/bin/tar: ./usr/lib/locale/en_HK: time stamp 2025-08-15 13:09:52 is 34109629.022650817 s in the future
/usr/bin/tar: ./usr/lib/locale/vi_VN: time stamp 2025-08-15 13:09:52 is 34109629.022620291 s in the future
/usr/bin/tar: ./usr/lib/locale/gl_ES@euro: time stamp 2025-08-15 13:09:52 is 34109629.022588287 s in the future
/usr/bin/tar: ./usr/lib/locale/ar_QA.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.02255754 s in the future
/usr/bin/tar: ./usr/lib/locale/ar_QA.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022527051 s in the future
/usr/bin/tar: ./usr/lib/locale/st_ZA.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.022495656 s in the future
/usr/bin/tar: ./usr/lib/locale/st_ZA.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022472506 s in the future
/usr/bin/tar: ./usr/lib/locale/ast_ES.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022451363 s in the future
/usr/bin/tar: ./usr/lib/locale/sc_IT: time stamp 2025-08-15 13:09:52 is 34109629.022430082 s in the future
/usr/bin/tar: ./usr/lib/locale/dv_MV/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.022408483 s in the future
/usr/bin/tar: ./usr/lib/locale/dv_MV: time stamp 2025-08-15 13:09:52 is 34109629.022387603 s in the future
/usr/bin/tar: ./usr/lib/locale/sk_SK.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022366617 s in the future
/usr/bin/tar: ./usr/lib/locale/tig_ER/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.022344516 s in the future
/usr/bin/tar: ./usr/lib/locale/tig_ER: time stamp 2025-08-15 13:09:52 is 34109629.022323187 s in the future
/usr/bin/tar: ./usr/lib/locale/gd_GB: time stamp 2025-08-15 13:09:52 is 34109629.022301234 s in the future
/usr/bin/tar: ./usr/lib/locale/ml_IN: time stamp 2025-08-15 13:09:52 is 34109629.02227998 s in the future
/usr/bin/tar: ./usr/lib/locale/gv_GB.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.022258385 s in the future
/usr/bin/tar: ./usr/lib/locale/gv_GB.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022236717 s in the future
/usr/bin/tar: ./usr/lib/locale/gl_ES.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022215921 s in the future
/usr/bin/tar: ./usr/lib/locale/hu_HU: time stamp 2025-08-15 13:09:52 is 34109629.022194382 s in the future
/usr/bin/tar: ./usr/lib/locale/nb_NO.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022172479 s in the future
/usr/bin/tar: ./usr/lib/locale/lv_LV.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022151339 s in the future
/usr/bin/tar: ./usr/lib/locale/ln_CD: time stamp 2025-08-15 13:09:52 is 34109629.022130396 s in the future
/usr/bin/tar: ./usr/lib/locale/mfe_MU: time stamp 2025-08-15 13:09:52 is 34109629.022109383 s in the future
/usr/bin/tar: ./usr/lib/locale/es_CL.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.022088677 s in the future
/usr/bin/tar: ./usr/lib/locale/es_CL.utf8: time stamp 2025-08-15 13:09:52 is 34109629.022067373 s in the future
/usr/bin/tar: ./usr/lib/locale/ca_ES@euro/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.022046347 s in the future
/usr/bin/tar: ./usr/lib/locale/ca_ES@euro: time stamp 2025-08-15 13:09:52 is 34109629.022025406 s in the future
/usr/bin/tar: ./usr/lib/locale/tl_PH: time stamp 2025-08-15 13:09:52 is 34109629.022004174 s in the future
/usr/bin/tar: ./usr/lib/locale/en_ZW/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021982713 s in the future
/usr/bin/tar: ./usr/lib/locale/en_ZW: time stamp 2025-08-15 13:09:52 is 34109629.021961983 s in the future
/usr/bin/tar: ./usr/lib/locale/en_SG.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021940683 s in the future
/usr/bin/tar: ./usr/lib/locale/en_SG.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021919476 s in the future
/usr/bin/tar: ./usr/lib/locale/tk_TM: time stamp 2025-08-15 13:09:52 is 34109629.021897792 s in the future
/usr/bin/tar: ./usr/lib/locale/hne_IN: time stamp 2025-08-15 13:09:52 is 34109629.021875551 s in the future
/usr/bin/tar: ./usr/lib/locale/kl_GL.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021853565 s in the future
/usr/bin/tar: ./usr/lib/locale/yue_HK: time stamp 2025-08-15 13:09:52 is 34109629.021832518 s in the future
/usr/bin/tar: ./usr/lib/locale/fi_FI.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021813351 s in the future
/usr/bin/tar: ./usr/lib/locale/so_SO.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021792619 s in the future
/usr/bin/tar: ./usr/lib/locale/so_SO.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021771893 s in the future
/usr/bin/tar: ./usr/lib/locale/nr_ZA/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021751237 s in the future
/usr/bin/tar: ./usr/lib/locale/nr_ZA: time stamp 2025-08-15 13:09:52 is 34109629.021730418 s in the future
/usr/bin/tar: ./usr/lib/locale/de_DE.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.02170923 s in the future
/usr/bin/tar: ./usr/lib/locale/de_DE.utf8: time stamp 2025-08-15 13:09:52 is 34109629.02168849 s in the future
/usr/bin/tar: ./usr/lib/locale/gez_ET@abegede/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021667181 s in the future
/usr/bin/tar: ./usr/lib/locale/gez_ET@abegede: time stamp 2025-08-15 13:09:52 is 34109629.021646577 s in the future
/usr/bin/tar: ./usr/lib/locale/cv_RU/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.02162744 s in the future
/usr/bin/tar: ./usr/lib/locale/cv_RU: time stamp 2025-08-15 13:09:52 is 34109629.021606518 s in the future
/usr/bin/tar: ./usr/lib/locale/gez_ER/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021585776 s in the future
/usr/bin/tar: ./usr/lib/locale/gez_ER: time stamp 2025-08-15 13:09:52 is 34109629.021564225 s in the future
/usr/bin/tar: ./usr/lib/locale/hy_AM: time stamp 2025-08-15 13:09:52 is 34109629.021543756 s in the future
/usr/bin/tar: ./usr/lib/locale/zu_ZA.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021522805 s in the future
/usr/bin/tar: ./usr/lib/locale/dsb_DE: time stamp 2025-08-15 13:09:52 is 34109629.02150183 s in the future
/usr/bin/tar: ./usr/lib/locale/ca_ES: time stamp 2025-08-15 13:09:52 is 34109629.021481176 s in the future
/usr/bin/tar: ./usr/lib/locale/zh_CN.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021460311 s in the future
/usr/bin/tar: ./usr/lib/locale/zh_CN.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021439438 s in the future
/usr/bin/tar: ./usr/lib/locale/lg_UG.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021418905 s in the future
/usr/bin/tar: ./usr/lib/locale/ps_AF: time stamp 2025-08-15 13:09:52 is 34109629.021397823 s in the future
/usr/bin/tar: ./usr/lib/locale/crh_UA: time stamp 2025-08-15 13:09:52 is 34109629.02137705 s in the future
/usr/bin/tar: ./usr/lib/locale/it_CH.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021356247 s in the future
/usr/bin/tar: ./usr/lib/locale/it_CH.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021335012 s in the future
/usr/bin/tar: ./usr/lib/locale/de_AT: time stamp 2025-08-15 13:09:52 is 34109629.021314036 s in the future
/usr/bin/tar: ./usr/lib/locale/ta_IN: time stamp 2025-08-15 13:09:52 is 34109629.0212954 s in the future
/usr/bin/tar: ./usr/lib/locale/es_GT/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021274191 s in the future
/usr/bin/tar: ./usr/lib/locale/es_GT: time stamp 2025-08-15 13:09:52 is 34109629.021252954 s in the future
/usr/bin/tar: ./usr/lib/locale/om_ET: time stamp 2025-08-15 13:09:52 is 34109629.02123188 s in the future
/usr/bin/tar: ./usr/lib/locale/niu_NU: time stamp 2025-08-15 13:09:52 is 34109629.021210905 s in the future
/usr/bin/tar: ./usr/lib/locale/ca_FR/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021190134 s in the future
/usr/bin/tar: ./usr/lib/locale/ca_FR: time stamp 2025-08-15 13:09:52 is 34109629.021169373 s in the future
/usr/bin/tar: ./usr/lib/locale/es_BO.utf8/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021148874 s in the future
/usr/bin/tar: ./usr/lib/locale/es_BO.utf8: time stamp 2025-08-15 13:09:52 is 34109629.021127925 s in the future
/usr/bin/tar: ./usr/lib/locale/ber_MA: time stamp 2025-08-15 13:09:52 is 34109629.021106939 s in the future
/usr/bin/tar: ./usr/lib/locale/es_ES/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021085625 s in the future
/usr/bin/tar: ./usr/lib/locale/es_ES: time stamp 2025-08-15 13:09:52 is 34109629.021064849 s in the future
/usr/bin/tar: ./usr/lib/locale/de_BE/LC_MESSAGES: time stamp 2025-08-15 13:09:52 is 34109629.021043615 s in the future
/usr/bin/tar: ./usr/lib/locale/de_BE: time stamp 2025-08-15 13:09:52 is 34109629.021022682 s in the future
/usr/bin/tar: ./usr/lib/locale/sgs_LT: time stamp 2025-08-15 13:09:52 is 34109629.0210022 s in the future
/usr/bin/tar: ./usr/lib/locale/fi_FI: time stamp 2025-08-15 13:09:52 is 34109629.020981507 s in the future
/usr/bin/tar: ./usr/lib/locale/gl_ES: time stamp 2025-08-15 13:09:52 is 34109629.020960148 s in the future
/usr/bin/tar: ./usr/lib/locale: time stamp 2025-08-15 13:09:52 is 34109629.020939094 s in the future
/usr/bin/tar: ./usr/lib/bfd-plugins: time stamp 2025-08-15 13:09:45 is 34109622.020918487 s in the future
/usr/bin/tar: ./usr/lib/apt/planners: time stamp 2025-08-15 13:09:29 is 34109606.020898254 s in the future
/usr/bin/tar: ./usr/lib/apt: time stamp 2025-08-15 13:09:29 is 34109606.020875004 s in the future
/usr/bin/tar: ./usr/lib/i386-linux-gnu/perl/cross-config-5.36.0: time stamp 2025-08-15 13:09:34 is 34109611.020853368 s in the future
/usr/bin/tar: ./usr/lib/i386-linux-gnu/perl: time stamp 2025-08-15 13:09:26 is 34109603.020832262 s in the future
/usr/bin/tar: ./usr/lib/i386-linux-gnu: time stamp 2025-08-15 13:09:50 is 34109627.020811605 s in the future
/usr/bin/tar: ./usr/lib/compat-ld: time stamp 2025-08-15 13:09:40 is 34109617.020791473 s in the future
/usr/bin/tar: ./usr/lib/gcc/i686-linux-gnu/12: time stamp 2025-08-15 13:09:44 is 34109621.020769732 s in the future
/usr/bin/tar: ./usr/lib/gcc/i686-linux-gnu: time stamp 2025-08-15 13:09:41 is 34109618.020748112 s in the future
/usr/bin/tar: ./usr/lib/gcc: time stamp 2025-08-15 13:09:41 is 34109618.020727282 s in the future
/usr/bin/tar: ./usr/lib/gold-ld: time stamp 2025-08-15 13:09:40 is 34109617.020707006 s in the future
/usr/bin/tar: ./usr/lib: time stamp 2025-08-15 13:09:45 is 34109622.020685763 s in the future
/usr/bin/tar: ./usr/bin: time stamp 2025-08-15 13:09:52 is 34109629.020664747 s in the future
/usr/bin/tar: ./usr: time stamp 2025-08-15 13:09:27 is 34109604.02064422 s in the future
/usr/bin/tar: ./lib: time stamp 2025-08-15 13:09:46 is 34109623.020610262 s in the future
/usr/bin/tar: ./etc/rc6.d: time stamp 2025-08-15 13:09:37 is 34109614.020589506 s in the future
/usr/bin/tar: ./etc/systemd/system/multi-user.target.wants: time stamp 2025-08-15 13:09:38 is 34109615.020568268 s in the future
/usr/bin/tar: ./etc/systemd/system/timers.target.wants: time stamp 2025-08-15 13:09:39 is 34109616.020547174 s in the future
/usr/bin/tar: ./etc/systemd/system: time stamp 2025-08-15 13:09:38 is 34109615.020525896 s in the future
/usr/bin/tar: ./etc/rcS.d: time stamp 2025-08-15 13:09:37 is 34109614.020492475 s in the future
/usr/bin/tar: ./etc/alternatives: time stamp 2025-08-15 13:09:52 is 34109629.02047174 s in the future
/usr/bin/tar: ./etc/rc0.d: time stamp 2025-08-15 13:09:37 is 34109614.020450933 s in the future
/usr/bin/tar: ./bin: time stamp 2025-08-15 13:09:50 is 34109627.020404605 s in the future
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [mothur_1.48.0-2.dsc]
I: copying [./mothur_1.48.0.orig.tar.gz]
I: copying [./mothur_1.48.0-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Aug  7 05:41:36 2022 +14
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./mothur_1.48.0-2.dsc: no acceptable signature found
dpkg-source: info: extracting mothur in mothur-1.48.0
dpkg-source: info: unpacking mothur_1.48.0.orig.tar.gz
dpkg-source: info: unpacking mothur_1.48.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying add-hardening-opts.patch
dpkg-source: info: applying 0002-Fix-include.patch
dpkg-source: info: applying drop_sys_sysctl.h.patch
dpkg-source: info: applying gcc-11.patch
dpkg-source: info: applying c++14.patch
dpkg-source: info: applying fix_linking.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/98338/tmp/hooks/D01_modify_environment starting
debug: Running on ionos16-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jul 16 18:16 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/98338/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/98338/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
  BASH_VERSION='5.2.15(1)-release'
  BUILDDIR=/build
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=i386
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 '
  DIRSTACK=()
  DISTRIBUTION=bookworm
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=i686
  HOST_ARCH=i386
  IFS=' 	
  '
  INVOCATION_ID=ed1e67e9b9744902afc6e6bf4fe7dd3a
  LANG=C
  LANGUAGE=de_CH:de
  LC_ALL=C
  LD_LIBRARY_PATH=/usr/lib/libeatmydata
  LD_PRELOAD=libeatmydata.so
  MACHTYPE=i686-pc-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=98338
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.72d4MXA3/pbuilderrc_PaYP --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.72d4MXA3/b2 --logfile b2/build.log --extrapackages usrmerge mothur_1.48.0-2.dsc'
  SUDO_GID=112
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://85.184.249.68:3128
I: uname -a
  Linux i-capture-the-hostname 6.1.0-9-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.27-1 (2023-05-08) x86_64 GNU/Linux
I: ls -l /bin
  total 6036
  -rwxr-xr-x 1 root root 1408088 Apr 24  2023 bash
  -rwxr-xr-x 3 root root   38404 Sep 19  2022 bunzip2
  -rwxr-xr-x 3 root root   38404 Sep 19  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 19  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 28  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 19  2022 bzgrep
  -rwxr-xr-x 3 root root   38404 Sep 19  2022 bzip2
  -rwxr-xr-x 1 root root   17892 Sep 19  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 19  2022 bzmore
  -rwxr-xr-x 1 root root   42920 Sep 21  2022 cat
  -rwxr-xr-x 1 root root   79816 Sep 21  2022 chgrp
  -rwxr-xr-x 1 root root   67496 Sep 21  2022 chmod
  -rwxr-xr-x 1 root root   79816 Sep 21  2022 chown
  -rwxr-xr-x 1 root root  162024 Sep 21  2022 cp
  -rwxr-xr-x 1 root root  136916 Jan  6  2023 dash
  -rwxr-xr-x 1 root root  137160 Sep 21  2022 date
  -rwxr-xr-x 1 root root  100364 Sep 21  2022 dd
  -rwxr-xr-x 1 root root  108940 Sep 21  2022 df
  -rwxr-xr-x 1 root root  162152 Sep 21  2022 dir
  -rwxr-xr-x 1 root root   87760 Mar 24  2023 dmesg
  lrwxrwxrwx 1 root root       8 Dec 20  2022 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 20  2022 domainname -> hostname
  -rwxr-xr-x 1 root root   38760 Sep 21  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 25  2023 egrep
  -rwxr-xr-x 1 root root   34664 Sep 21  2022 false
  -rwxr-xr-x 1 root root      41 Jan 25  2023 fgrep
  -rwxr-xr-x 1 root root   84272 Mar 24  2023 findmnt
  -rwsr-xr-x 1 root root   30240 Mar 23  2023 fusermount
  -rwxr-xr-x 1 root root  218680 Jan 25  2023 grep
  -rwxr-xr-x 2 root root    2346 Apr 10  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr 10  2022 gzexe
  -rwxr-xr-x 1 root root  100952 Apr 10  2022 gzip
  -rwxr-xr-x 1 root root   21916 Dec 20  2022 hostname
  -rwxr-xr-x 1 root root   75756 Sep 21  2022 ln
  -rwxr-xr-x 1 root root   55600 Mar 24  2023 login
  -rwxr-xr-x 1 root root  162152 Sep 21  2022 ls
  -rwxr-xr-x 1 root root  214568 Mar 24  2023 lsblk
  -rwxr-xr-x 1 root root   96328 Sep 21  2022 mkdir
  -rwxr-xr-x 1 root root   84008 Sep 21  2022 mknod
  -rwxr-xr-x 1 root root   38792 Sep 21  2022 mktemp
  -rwxr-xr-x 1 root root   63016 Mar 24  2023 more
  -rwsr-xr-x 1 root root   58912 Mar 24  2023 mount
  -rwxr-xr-x 1 root root   13856 Mar 24  2023 mountpoint
  -rwxr-xr-x 1 root root  157932 Sep 21  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 20  2022 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  3  2023 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   38792 Sep 21  2022 pwd
  lrwxrwxrwx 1 root root       4 Apr 24  2023 rbash -> bash
  -rwxr-xr-x 1 root root   51080 Sep 21  2022 readlink
  -rwxr-xr-x 1 root root   75720 Sep 21  2022 rm
  -rwxr-xr-x 1 root root   51080 Sep 21  2022 rmdir
  -rwxr-xr-x 1 root root   22308 Nov  3  2022 run-parts
  -rwxr-xr-x 1 root root  133224 Jan  6  2023 sed
  lrwxrwxrwx 1 root root       9 Jul 16 18:16 sh -> /bin/bash
  -rwxr-xr-x 1 root root   38760 Sep 21  2022 sleep
  -rwxr-xr-x 1 root root   87976 Sep 21  2022 stty
  -rwsr-xr-x 1 root root   83492 Mar 24  2023 su
  -rwxr-xr-x 1 root root   38792 Sep 21  2022 sync
  -rwxr-xr-x 1 root root  598456 Apr  7  2023 tar
  -rwxr-xr-x 1 root root   13860 Nov  3  2022 tempfile
  -rwxr-xr-x 1 root root  120776 Sep 21  2022 touch
  -rwxr-xr-x 1 root root   34664 Sep 21  2022 true
  -rwxr-xr-x 1 root root   17892 Mar 23  2023 ulockmgr_server
  -rwsr-xr-x 1 root root   30236 Mar 24  2023 umount
  -rwxr-xr-x 1 root root   38760 Sep 21  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr 10  2022 uncompress
  -rwxr-xr-x 1 root root  162152 Sep 21  2022 vdir
  -rwxr-xr-x 1 root root   71216 Mar 24  2023 wdctl
  lrwxrwxrwx 1 root root       8 Dec 20  2022 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr 10  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr 10  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr 10  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr 10  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr 10  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr 10  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr 10  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr 10  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr 10  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr 10  2022 znew
I: user script /srv/workspace/pbuilder/98338/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), gfortran, libboost-iostreams-dev, libreadline-dev, zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19599 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on gfortran; however:
  Package gfortran is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however:
  Package libboost-iostreams-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libreadline-dev; however:
  Package libreadline-dev is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost1.74-dev{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libicu-dev{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses6{a} libpipeline1{a} libreadline-dev{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
Need to get 54.5 MB of archives. After unpacking 323 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 22 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 24 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libgfortran-12-dev i386 12.2.0-14 [761 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 gfortran-12 i386 12.2.0-14 [10.5 MB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 gfortran i386 4:12.2.0-3 [1432 B]
Get: 36 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-21 [9508 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74.0 i386 1.74.0+ds1-21 [509 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74-dev i386 1.74.0+ds1-21 [585 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libboost-iostreams1.74-dev i386 1.74.0+ds1-21 [250 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B]
Get: 43 http://deb.debian.org/debian bookworm/main i386 libncurses6 i386 6.4-4 [111 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 libncurses-dev i386 6.4-4 [379 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 libreadline-dev i386 8.2-1.3 [164 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB]
Fetched 54.5 MB in 1s (53.8 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package readline-common.
(Reading database ... 
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(Reading database ... 19599 files and directories currently installed.)
Preparing to unpack .../00-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
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Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_i386.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:i386.
Preparing to unpack .../03-libmagic1_1%3a5.44-3_i386.deb ...
Unpacking libmagic1:i386 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.44-3_i386.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.21-12_i386.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../06-libuchardet0_0.0.7-1_i386.deb ...
Unpacking libuchardet0:i386 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../07-groff-base_1.22.4-10_i386.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_i386.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../09-libpipeline1_1.5.7-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.7-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.11.2-2) ...
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Preparing to unpack .../11-m4_1.4.19-3_i386.deb ...
Unpacking m4 (1.4.19-3) ...
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Unpacking autoconf (2.71-3) ...
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Unpacking autotools-dev (20220109.1) ...
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Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
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Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
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Unpacking dh-autoreconf (20) ...
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Unpacking dh-strip-nondeterminism (1.13.1-1) ...
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Unpacking libelf1:i386 (0.188-2.1) ...
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Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:i386.
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Unpacking libicu72:i386 (72.1-3) ...
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Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ...
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Unpacking gettext (0.21-12) ...
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Unpacking gfortran-12 (12.2.0-14) ...
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Unpacking gfortran (4:12.2.0-3) ...
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Unpacking icu-devtools (72.1-3) ...
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Unpacking libboost1.74-dev:i386 (1.74.0+ds1-21) ...
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Unpacking libboost-regex1.74.0:i386 (1.74.0+ds1-21) ...
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Unpacking libboost-regex1.74-dev:i386 (1.74.0+ds1-21) ...
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Unpacking libboost-iostreams1.74-dev:i386 (1.74.0+ds1-21) ...
Selecting previously unselected package libboost-iostreams-dev:i386.
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usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/98338/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
removed '/etc/unsupported-skip-usrmerge-conversion'
The system has been successfully converted.
I: user script /srv/workspace/pbuilder/98338/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/mothur-1.48.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../mothur_1.48.0-2_source.changes
dpkg-buildpackage: info: source package mothur
dpkg-buildpackage: info: source version 1.48.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Mohammed Bilal <mdbilal@disroot.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/mothur-1.48.0'
rm -f mothur uchime
make clean
make[2]: Entering directory '/build/mothur-1.48.0'
make[2]: Leaving directory '/build/mothur-1.48.0'
(cd source/uchime_src && rm -f *.o mk.stdout mk.stderr tmp.stderr)
make[1]: Leaving directory '/build/mothur-1.48.0'
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/mothur-1.48.0'
dh_auto_build -- 64BIT_VERSION=no
	make -j15 "INSTALL=install --strip-program=true" 64BIT_VERSION=no
make[2]: Entering directory '/build/mothur-1.48.0'
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/accuracy.o source/calculators/accuracy.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/ace.o source/calculators/ace.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/bergerparker.o source/calculators/bergerparker.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/boneh.o source/calculators/boneh.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/bootstrap.o source/calculators/bootstrap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/bstick.o source/calculators/bstick.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/calculator.o source/calculators/calculator.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/canberra.o source/calculators/canberra.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/chao1.o source/calculators/chao1.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/coverage.o source/calculators/coverage.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/diversityutils.o source/calculators/diversityutils.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/eachgapdist.o source/calculators/eachgapdist.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/eachgapignore.o source/calculators/eachgapignore.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/efron.o source/calculators/efron.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/erarefaction.o source/calculators/erarefaction.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/f1score.o source/calculators/f1score.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/fdr.o source/calculators/fdr.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/fn.o source/calculators/fn.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/fp.o source/calculators/fp.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/fpfn.o source/calculators/fpfn.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/geom.o source/calculators/geom.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/goodscoverage.o source/calculators/goodscoverage.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/gower.o source/calculators/gower.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/hamming.o source/calculators/hamming.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/heip.o source/calculators/heip.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/hellinger.o source/calculators/hellinger.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/igabundance.o source/calculators/igabundance.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/ignoregaps.o source/calculators/ignoregaps.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/igrarefaction.o source/calculators/igrarefaction.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/invsimpson.o source/calculators/invsimpson.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/jackknife.o source/calculators/jackknife.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/kimura.o source/calculators/kimura.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/kmerdist.o source/calculators/kmerdist.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/lnabundance.o source/calculators/lnabundance.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/lnrarefaction.o source/calculators/lnrarefaction.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/lnshift.o source/calculators/lnshift.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/logsd.o source/calculators/logsd.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/lsabundance.o source/calculators/lsabundance.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/lsrarefaction.o source/calculators/lsrarefaction.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/manhattan.o source/calculators/manhattan.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/mcc.o source/calculators/mcc.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/memchi2.o source/calculators/memchi2.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/memchord.o source/calculators/memchord.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/memeuclidean.o source/calculators/memeuclidean.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/mempearson.o source/calculators/mempearson.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/metroig.o source/calculators/metroig.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/metrolognormal.o source/calculators/metrolognormal.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/metrologstudent.o source/calculators/metrologstudent.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/metrosichel.o source/calculators/metrosichel.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/npshannon.o source/calculators/npshannon.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/npv.o source/calculators/npv.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/odum.o source/calculators/odum.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/onegapdist.o source/calculators/onegapdist.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/onegapignore.o source/calculators/onegapignore.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/parsimony.o source/calculators/parsimony.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/ppv.o source/calculators/ppv.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/prng.o source/calculators/prng.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/qstat.o source/calculators/qstat.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sensitivity.o source/calculators/sensitivity.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/shannon.o source/calculators/shannon.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/shannoneven.o source/calculators/shannoneven.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/shannonrange.o source/calculators/shannonrange.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedace.o source/calculators/sharedace.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedanderbergs.o source/calculators/sharedanderbergs.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedbraycurtis.o source/calculators/sharedbraycurtis.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedchao1.o source/calculators/sharedchao1.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedjabund.o source/calculators/sharedjabund.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedjackknife.o source/calculators/sharedjackknife.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedjclass.o source/calculators/sharedjclass.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedjest.o source/calculators/sharedjest.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedjsd.o source/calculators/sharedjsd.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedkstest.o source/calculators/sharedkstest.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedkulczynski.o source/calculators/sharedkulczynski.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedkulczynskicody.o source/calculators/sharedkulczynskicody.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedlennon.o source/calculators/sharedlennon.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedmarczewski.o source/calculators/sharedmarczewski.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedmorisitahorn.o source/calculators/sharedmorisitahorn.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedochiai.o source/calculators/sharedochiai.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedrjsd.o source/calculators/sharedrjsd.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedsobs.o source/calculators/sharedsobs.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedsobscollectsummary.o source/calculators/sharedsobscollectsummary.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedsorabund.o source/calculators/sharedsorabund.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedsorclass.o source/calculators/sharedsorclass.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedsorest.o source/calculators/sharedsorest.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedthetan.o source/calculators/sharedthetan.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sharedthetayc.o source/calculators/sharedthetayc.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/shen.o source/calculators/shen.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/siabundance.o source/calculators/siabundance.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/simpson.o source/calculators/simpson.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/simpsoneven.o source/calculators/simpsoneven.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sirarefaction.o source/calculators/sirarefaction.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/sishift.o source/calculators/sishift.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/smithwilson.o source/calculators/smithwilson.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/soergel.o source/calculators/soergel.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/solow.o source/calculators/solow.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/spearman.o source/calculators/spearman.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/speciesprofile.o source/calculators/speciesprofile.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/specificity.o source/calculators/specificity.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/structchi2.o source/calculators/structchi2.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/structchord.o source/calculators/structchord.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/structeuclidean.o source/calculators/structeuclidean.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/structkulczynski.o source/calculators/structkulczynski.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/structpearson.o source/calculators/structpearson.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/tn.o source/calculators/tn.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/tp.o source/calculators/tp.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/tptn.o source/calculators/tptn.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/unweighted.o source/calculators/unweighted.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/uvest.o source/calculators/uvest.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/weighted.o source/calculators/weighted.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calculators/whittaker.o source/calculators/whittaker.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/bellerophon.o source/chimera/bellerophon.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/ccode.o source/chimera/ccode.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/chimeracheckrdp.o source/chimera/chimeracheckrdp.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/chimerarealigner.o source/chimera/chimerarealigner.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/chimeraslayer.o source/chimera/chimeraslayer.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/decalc.o source/chimera/decalc.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/maligner.o source/chimera/maligner.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/mothurchimera.o source/chimera/mothurchimera.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/myPerseus.o source/chimera/myPerseus.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/pintail.o source/chimera/pintail.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/chimera/slayer.o source/chimera/slayer.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/alignnode.o source/classifier/alignnode.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/aligntree.o source/classifier/aligntree.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/bayesian.o source/classifier/bayesian.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/classify.o source/classifier/classify.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/kmernode.o source/classifier/kmernode.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/kmertree.o source/classifier/kmertree.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/knn.o source/classifier/knn.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/phylosummary.o source/classifier/phylosummary.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/phylotree.o source/classifier/phylotree.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/taxonomyequalizer.o source/classifier/taxonomyequalizer.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/classifier/taxonomynode.o source/classifier/taxonomynode.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/clearcut/clearcut.o source/clearcut/clearcut.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/clearcut/cmdargs.o source/clearcut/cmdargs.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/clearcut/distclearcut.o source/clearcut/distclearcut.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/clearcut/dmat.o source/clearcut/dmat.cpp
source/clearcut/dmat.cpp: In function 'DMAT* NJ_parse_distance_matrix(NJ_ARGS*)':
source/clearcut/dmat.cpp:456:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  456 |   fscanf(fp, "%ld\n", &dmat->ntaxa);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
source/clearcut/distclearcut.cpp: In function 'DMAT* NJ_compute_dmat(NJ_ARGS*, NJ_alignment*)':
source/clearcut/distclearcut.cpp:155:41: warning: 'char* __builtin_strncat(char*, const char*, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=]
  155 |       *dmat->taxaname[i] = '\0'; strncat(dmat->taxaname[i], alignment->titles[i], strlen(alignment->titles[i])+1);
      |                                         ^
source/clearcut/distclearcut.cpp:155:89: note: length computed here
  155 |       *dmat->taxaname[i] = '\0'; strncat(dmat->taxaname[i], alignment->titles[i], strlen(alignment->titles[i])+1);
      |                                                                                   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/clearcut/fasta.o source/clearcut/fasta.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/clearcut/getopt_long.o source/clearcut/getopt_long.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/aligncheckcommand.o source/commands/aligncheckcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/aligncommand.o source/commands/aligncommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/alignmusclecommand.o source/commands/alignmusclecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/amovacommand.o source/commands/amovacommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/anosimcommand.o source/commands/anosimcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/binsequencecommand.o source/commands/binsequencecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/biominfocommand.o source/commands/biominfocommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chimerabellerophoncommand.o source/commands/chimerabellerophoncommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chimeraccodecommand.o source/commands/chimeraccodecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chimeracheckcommand.o source/commands/chimeracheckcommand.cpp
source/commands/alignmusclecommand.cpp: In member function 'void AlignMuscleCommand::wrapperFunction()':
source/commands/alignmusclecommand.cpp:297:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  297 |         system(commandString.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chimeraperseuscommand.o source/commands/chimeraperseuscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chimerapintailcommand.o source/commands/chimerapintailcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chimeraslayercommand.o source/commands/chimeraslayercommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chimerauchimecommand.o source/commands/chimerauchimecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chimeravsearchcommand.o source/commands/chimeravsearchcommand.cpp
source/commands/chimerauchimecommand.cpp: In function 'int driver(uchimeData*)':
source/commands/chimerauchimecommand.cpp:517:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  517 |         system(commandString.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/chopseqscommand.o source/commands/chopseqscommand.cpp
source/commands/chimeravsearchcommand.cpp: In function 'void driver(vsearchData*)':
source/commands/chimeravsearchcommand.cpp:412:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  412 |         system(commandString.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/classifyotucommand.o source/commands/classifyotucommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/classifyseqscommand.o source/commands/classifyseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/classifysvmsharedcommand.o source/commands/classifysvmsharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/classifytreecommand.o source/commands/classifytreecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/clearcutcommand.o source/commands/clearcutcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/clustercommand.o source/commands/clustercommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/clusterdoturcommand.o source/commands/clusterdoturcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/clusterfitcommand.o source/commands/clusterfitcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/clusterfragmentscommand.o source/commands/clusterfragmentscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/clustersplitcommand.o source/commands/clustersplitcommand.cpp
source/commands/clustercommand.cpp: In member function 'int ClusterCommand::vsearchDriver(std::string, std::string, std::string)':
source/commands/clustercommand.cpp:542:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  542 |         system(commandString.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
source/commands/clustersplitcommand.cpp: In function 'int vsearchDriver(std::string, std::string, std::string, double, clusterData*)':
source/commands/clustersplitcommand.cpp:1050:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1050 |         system(commandString.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/collectcommand.o source/commands/collectcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/collectsharedcommand.o source/commands/collectsharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/consensusseqscommand.o source/commands/consensusseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/cooccurrencecommand.o source/commands/cooccurrencecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/corraxescommand.o source/commands/corraxescommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/countgroupscommand.o source/commands/countgroupscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/countseqscommand.o source/commands/countseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/createdatabasecommand.o source/commands/createdatabasecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/degapseqscommand.o source/commands/degapseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/deuniqueseqscommand.o source/commands/deuniqueseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/deuniquetreecommand.o source/commands/deuniquetreecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/distancecommand.o source/commands/distancecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/distsharedcommand.o source/commands/distsharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/diversityestimatorcommand.o source/commands/diversityestimatorcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/fastaqinfocommand.o source/commands/fastaqinfocommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/filterseqscommand.o source/commands/filterseqscommand.cpp
source/commands/distancecommand.cpp: In member function 'virtual int DistanceCommand::execute()':
source/commands/distancecommand.cpp:323:31: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  323 |                         system(("gzip -v " + outputFile).c_str());
      |                         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/filtersharedcommand.o source/commands/filtersharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getcoremicrobiomecommand.o source/commands/getcoremicrobiomecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getcurrentcommand.o source/commands/getcurrentcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getdistscommand.o source/commands/getdistscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getgroupcommand.o source/commands/getgroupcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getgroupscommand.o source/commands/getgroupscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getlabelcommand.o source/commands/getlabelcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getlineagecommand.o source/commands/getlineagecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getlistcountcommand.o source/commands/getlistcountcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getmetacommunitycommand.o source/commands/getmetacommunitycommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getmimarkspackagecommand.o source/commands/getmimarkspackagecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getoturepcommand.o source/commands/getoturepcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getotuscommand.o source/commands/getotuscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getrabundcommand.o source/commands/getrabundcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getrelabundcommand.o source/commands/getrelabundcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getsabundcommand.o source/commands/getsabundcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getseqscommand.o source/commands/getseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/getsharedotucommand.o source/commands/getsharedotucommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/heatmapcommand.o source/commands/heatmapcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/heatmapsimcommand.o source/commands/heatmapsimcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/helpcommand.o source/commands/helpcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/homovacommand.o source/commands/homovacommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/indicatorcommand.o source/commands/indicatorcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/kruskalwalliscommand.o source/commands/kruskalwalliscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/lefsecommand.o source/commands/lefsecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/libshuffcommand.o source/commands/libshuffcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/listotuscommand.o source/commands/listotuscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/listseqscommand.o source/commands/listseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makebiomcommand.o source/commands/makebiomcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makeclrcommand.o source/commands/makeclrcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makecontigscommand.o source/commands/makecontigscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makefastqcommand.o source/commands/makefastqcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makefilecommand.o source/commands/makefilecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makegroupcommand.o source/commands/makegroupcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makelefsecommand.o source/commands/makelefsecommand.cpp
source/commands/makefilecommand.cpp: In member function 'int MakeFileCommand::fillAccnosFile(std::string)':
source/commands/makefilecommand.cpp:354:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  354 |         system(findCommand.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makelookupcommand.o source/commands/makelookupcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/makesharedcommand.o source/commands/makesharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mantelcommand.o source/commands/mantelcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mergecountcommand.o source/commands/mergecountcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mergefilecommand.o source/commands/mergefilecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mergegroupscommand.o source/commands/mergegroupscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mergeotuscommand.o source/commands/mergeotuscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mergesfffilecommand.o source/commands/mergesfffilecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mergetaxsummarycommand.o source/commands/mergetaxsummarycommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/metastatscommand.o source/commands/metastatscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mgclustercommand.o source/commands/mgclustercommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/mimarksattributescommand.o source/commands/mimarksattributescommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/newcommandtemplate.o source/commands/newcommandtemplate.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/nmdscommand.o source/commands/nmdscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/nocommands.o source/commands/nocommands.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/normalizesharedcommand.o source/commands/normalizesharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/otuassociationcommand.o source/commands/otuassociationcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/otuhierarchycommand.o source/commands/otuhierarchycommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/pairwiseseqscommand.o source/commands/pairwiseseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/parsimonycommand.o source/commands/parsimonycommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/pcacommand.o source/commands/pcacommand.cpp
source/commands/pairwiseseqscommand.cpp: In member function 'virtual int PairwiseSeqsCommand::execute()':
source/commands/pairwiseseqscommand.cpp:339:19: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  339 |             system(("gzip -v " + outputFile).c_str());
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/pcoacommand.o source/commands/pcoacommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/pcrseqscommand.o source/commands/pcrseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/phylodiversitycommand.o source/commands/phylodiversitycommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/phylotypecommand.o source/commands/phylotypecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/preclustercommand.o source/commands/preclustercommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/primerdesigncommand.o source/commands/primerdesigncommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/quitcommand.o source/commands/quitcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/rarefactcommand.o source/commands/rarefactcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/rarefactsharedcommand.o source/commands/rarefactsharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/removedistscommand.o source/commands/removedistscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/removegroupscommand.o source/commands/removegroupscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/removelineagecommand.o source/commands/removelineagecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/removeotuscommand.o source/commands/removeotuscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/removerarecommand.o source/commands/removerarecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/removeseqscommand.o source/commands/removeseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/renamefilecommand.o source/commands/renamefilecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/renameseqscommand.o source/commands/renameseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/reversecommand.o source/commands/reversecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/screenseqscommand.o source/commands/screenseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/sensspeccommand.o source/commands/sensspeccommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/seqerrorcommand.o source/commands/seqerrorcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/seqsummarycommand.o source/commands/seqsummarycommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/setcurrentcommand.o source/commands/setcurrentcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/setdircommand.o source/commands/setdircommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/setlogfilecommand.o source/commands/setlogfilecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/setseedcommand.o source/commands/setseedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/sffinfocommand.o source/commands/sffinfocommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/sffmultiplecommand.o source/commands/sffmultiplecommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/shhhercommand.o source/commands/shhhercommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/shhhseqscommand.o source/commands/shhhseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/sortseqscommand.o source/commands/sortseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/sparcccommand.o source/commands/sparcccommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/splitabundcommand.o source/commands/splitabundcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/splitgroupscommand.o source/commands/splitgroupscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/sracommand.o source/commands/sracommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/srainfocommand.o source/commands/srainfocommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/subsamplecommand.o source/commands/subsamplecommand.cpp
source/commands/srainfocommand.cpp: In member function 'void SRAInfoCommand::runSystemCommand(std::string)':
source/commands/srainfocommand.cpp:487:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  487 |         system(inputString.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/summarycommand.o source/commands/summarycommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/summaryqualcommand.o source/commands/summaryqualcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/summarysharedcommand.o source/commands/summarysharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/summarytaxcommand.o source/commands/summarytaxcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/systemcommand.o source/commands/systemcommand.cpp
source/commands/systemcommand.cpp: In member function 'virtual int SystemCommand::execute()':
source/commands/systemcommand.cpp:97:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   97 |         system(command.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/translateseqscommand.o source/commands/translateseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/treesharedcommand.o source/commands/treesharedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/trimflowscommand.o source/commands/trimflowscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/trimseqscommand.o source/commands/trimseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/unifracunweightedcommand.o source/commands/unifracunweightedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/unifracweightedcommand.o source/commands/unifracweightedcommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/uniqueseqscommand.o source/commands/uniqueseqscommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commands/venncommand.o source/commands/venncommand.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/communitytype/communitytype.o source/communitytype/communitytype.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/communitytype/kmeans.o source/communitytype/kmeans.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/communitytype/pam.o source/communitytype/pam.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/communitytype/qFinderDMM.o source/communitytype/qFinderDMM.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/alignment.o source/datastructures/alignment.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/alignmentcell.o source/datastructures/alignmentcell.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/alignmentdb.o source/datastructures/alignmentdb.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/aminoacid.o source/datastructures/aminoacid.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/biom.o source/datastructures/biom.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/biomhdf5.o source/datastructures/biomhdf5.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/biomsimple.o source/datastructures/biomsimple.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/contigsreport.o source/datastructures/contigsreport.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/counttable.o source/datastructures/counttable.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/designmap.o source/datastructures/designmap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/distancedb.o source/datastructures/distancedb.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/fastamap.o source/datastructures/fastamap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/fastqread.o source/datastructures/fastqread.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/filefile.o source/datastructures/filefile.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/flowdata.o source/datastructures/flowdata.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/fullmatrix.o source/datastructures/fullmatrix.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/groupmap.o source/datastructures/groupmap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/kmer.o source/datastructures/kmer.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/kmeralign.o source/datastructures/kmeralign.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/kmerdb.o source/datastructures/kmerdb.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/listvector.o source/datastructures/listvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/nameassignment.o source/datastructures/nameassignment.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/oligos.o source/datastructures/oligos.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/optiblastmatrix.o source/datastructures/optiblastmatrix.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/optidata.o source/datastructures/optidata.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/optidb.o source/datastructures/optidb.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/optimatrix.o source/datastructures/optimatrix.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/optirefmatrix.o source/datastructures/optirefmatrix.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/ordervector.o source/datastructures/ordervector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/picrust.o source/datastructures/picrust.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/protein.o source/datastructures/protein.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/proteindb.o source/datastructures/proteindb.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/qualityscores.o source/datastructures/qualityscores.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/rabundfloatvector.o source/datastructures/rabundfloatvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/rabundvector.o source/datastructures/rabundvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/report.o source/datastructures/report.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sabundvector.o source/datastructures/sabundvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sequence.o source/datastructures/sequence.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sequencecountparser.o source/datastructures/sequencecountparser.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sequencedb.o source/datastructures/sequencedb.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sequenceparser.o source/datastructures/sequenceparser.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sffheader.o source/datastructures/sffheader.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sffread.o source/datastructures/sffread.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sharedclrvector.o source/datastructures/sharedclrvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sharedclrvectors.o source/datastructures/sharedclrvectors.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sharedlistvector.o source/datastructures/sharedlistvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sharedordervector.o source/datastructures/sharedordervector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sharedrabundfloatvector.o source/datastructures/sharedrabundfloatvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sharedrabundfloatvectors.o source/datastructures/sharedrabundfloatvectors.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sharedrabundvectors.o source/datastructures/sharedrabundvectors.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sparsedistancematrix.o source/datastructures/sparsedistancematrix.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/sparsematrix.o source/datastructures/sparsematrix.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/suffixdb.o source/datastructures/suffixdb.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/suffixnodes.o source/datastructures/suffixnodes.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/suffixtree.o source/datastructures/suffixtree.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/taxonomy.o source/datastructures/taxonomy.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/tree.o source/datastructures/tree.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/treemap.o source/datastructures/treemap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/datastructures/treenode.o source/datastructures/treenode.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/engines/batchengine.o source/engines/batchengine.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/engines/interactengine.o source/engines/interactengine.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/engines/scriptengine.o source/engines/scriptengine.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/metastats/mothurfisher.o source/metastats/mothurfisher.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/metastats/mothurmetastats.o source/metastats/mothurmetastats.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/read/readblast.o source/read/readblast.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/read/readcluster.o source/read/readcluster.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/read/readcolumn.o source/read/readcolumn.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/read/readphylip.o source/read/readphylip.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/read/readphylipvector.o source/read/readphylipvector.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/read/readtree.o source/read/readtree.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/read/splitmatrix.o source/read/splitmatrix.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/read/treereader.o source/read/treereader.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/svm/svm.o source/svm/svm.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/alignreport.o source/alignreport.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/averagelinkage.o source/averagelinkage.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/calcsparcc.o source/calcsparcc.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/cluster.o source/cluster.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/clusterclassic.o source/clusterclassic.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/collect.o source/collect.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commandfactory.o source/commandfactory.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/commandoptionparser.o source/commandoptionparser.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/completelinkage.o source/completelinkage.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/consensus.o source/consensus.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/currentfile.o source/currentfile.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/dlibshuff.o source/dlibshuff.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/fileoutput.o source/fileoutput.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/gotohoverlap.o source/gotohoverlap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/heatmap.o source/heatmap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/heatmapsim.o source/heatmapsim.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/inputdata.o source/inputdata.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/libshuff.o source/libshuff.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/linearalgebra.o source/linearalgebra.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/mothur.o source/mothur.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/mothurout.o source/mothurout.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/myseqdist.o source/myseqdist.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/nast.o source/nast.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/needlemanoverlap.o source/needlemanoverlap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/noalign.o source/noalign.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/opticluster.o source/opticluster.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/optifitcluster.o source/optifitcluster.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/optionparser.o source/optionparser.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/overlap.o source/overlap.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/raredisplay.o source/raredisplay.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/rarefact.o source/rarefact.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/refchimeratest.o source/refchimeratest.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/sensspeccalc.o source/sensspeccalc.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/seqnoise.o source/seqnoise.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/singlelinkage.o source/singlelinkage.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/slibshuff.o source/slibshuff.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/subsample.o source/subsample.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/summary.o source/summary.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/trialSwap2.o source/trialSwap2.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/trimoligos.o source/trimoligos.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/utils.o source/utils.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/validcalculator.o source/validcalculator.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/validparameter.o source/validparameter.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/venn.o source/venn.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/vsearchfileparser.o source/vsearchfileparser.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/weightedlinkage.o source/weightedlinkage.cpp
g++ -g -O2 -ffile-prefix-map=/build/mothur-1.48.0=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -pthread -DVERSION="\"1.48.0\"" -DRELEASE_DATE="\"5/20/22\"" -DUSE_READLINE -Isource  -I source/calculators/  -I source/chimera/  -I source/classifier/  -I source/clearcut/  -I source/commands/  -I source/communitytype/  -I source/datastructures/  -I source/engines/  -I source/metastats/  -I source/read/  -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2  -c -o source/wilcox.o source/wilcox.cpp
cd source/uchime_src && export CXX=g++ && make clean && make && mv uchime ../../ && cd ..
make[3]: Entering directory '/build/mothur-1.48.0/source/uchime_src'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Leaving directory '/build/mothur-1.48.0/source/uchime_src'
make[3]: Entering directory '/build/mothur-1.48.0/source/uchime_src'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o addtargets2.o addtargets2.cpp
source/utils.cpp: In member function 'bool Utils::findTool(std::string&, std::string&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::vector<std::__cxx11::basic_string<char> > >)':
source/utils.cpp:952:19: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  952 |             system(versionTestCommand.c_str());
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
source/utils.cpp: In member function 'std::string Utils::sortFile(std::string, std::string)':
source/utils.cpp:1514:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1514 |         system(command.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~~~~
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alignchime.o alignchime.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alignchimel.o alignchimel.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alnparams.o alnparams.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alpha.o alpha.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alpha2.o alpha2.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o fractid.o fractid.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o getparents.o getparents.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o globalalign2.o globalalign2.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o make3way.o make3way.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mx.o mx.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o myutils.o myutils.cpp
myutils.cpp: In function 'const char* SecsToHHMMSS(int)':
myutils.cpp:728:36: warning: '%02d' directive writing between 2 and 9 bytes into a region of size between 8 and 13 [-Wformat-overflow=]
  728 |                 sprintf(Str, "%02d:%02d:%02d", HH, MM, SS);
      |                                    ^~~~
myutils.cpp:728:30: note: directive argument in the range [-35791394, 35791394]
  728 |                 sprintf(Str, "%02d:%02d:%02d", HH, MM, SS);
      |                              ^~~~~~~~~~~~~~~~
myutils.cpp:728:30: note: directive argument in the range [-59, 59]
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/12/cstdio:42,
                 from /usr/include/c++/12/ext/string_conversions.h:43,
                 from /usr/include/c++/12/bits/basic_string.h:3960,
                 from /usr/include/c++/12/string:53,
                 from myutils.cpp:7:
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'const char* SecsToHHMMSS(int)' at myutils.cpp:728:10:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 9 and 22 bytes into a destination of size 16
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
myutils.cpp: In function 'const char* SecsToStr(double)':
myutils.cpp:728:36: warning: '%02d' directive writing between 2 and 9 bytes into a region of size between 8 and 13 [-Wformat-overflow=]
  728 |                 sprintf(Str, "%02d:%02d:%02d", HH, MM, SS);
      |                                    ^~~~
In function 'const char* SecsToHHMMSS(int)',
    inlined from 'const char* SecsToStr(double)' at myutils.cpp:735:22:
myutils.cpp:728:30: note: directive argument in the range [-35791394, 35791394]
  728 |                 sprintf(Str, "%02d:%02d:%02d", HH, MM, SS);
      |                              ^~~~~~~~~~~~~~~~
myutils.cpp:728:30: note: directive argument in the range [-59, 59]
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'const char* SecsToHHMMSS(int)' at myutils.cpp:728:10,
    inlined from 'const char* SecsToStr(double)' at myutils.cpp:735:22:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 9 and 22 bytes into a destination of size 16
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
myutils.cpp: In function 'void Progress(const char*, ...)':
myutils.cpp:728:36: warning: '%02d' directive writing between 2 and 9 bytes into a region of size between 8 and 13 [-Wformat-overflow=]
  728 |                 sprintf(Str, "%02d:%02d:%02d", HH, MM, SS);
      |                                    ^~~~
In function 'const char* SecsToHHMMSS(int)',
    inlined from 'std::string& GetProgressPrefixStr(std::string&)' at myutils.cpp:851:6,
    inlined from 'void Progress(const char*, ...)' at myutils.cpp:906:24:
myutils.cpp:728:30: note: directive argument in the range [-35791394, 35791394]
  728 |                 sprintf(Str, "%02d:%02d:%02d", HH, MM, SS);
      |                              ^~~~~~~~~~~~~~~~
myutils.cpp:728:30: note: directive argument in the range [-59, 59]
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'const char* SecsToHHMMSS(int)' at myutils.cpp:728:10,
    inlined from 'std::string& GetProgressPrefixStr(std::string&)' at myutils.cpp:851:6,
    inlined from 'void Progress(const char*, ...)' at myutils.cpp:906:24:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 9 and 22 bytes into a destination of size 16
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
myutils.cpp: In function 'void ProgressExit()':
myutils.cpp:728:36: warning: '%02d' directive writing between 2 and 9 bytes into a region of size between 8 and 13 [-Wformat-overflow=]
  728 |                 sprintf(Str, "%02d:%02d:%02d", HH, MM, SS);
      |                                    ^~~~
In function 'const char* SecsToHHMMSS(int)',
    inlined from 'void ProgressExit()' at myutils.cpp:943:5:
myutils.cpp:728:30: note: directive argument in the range [-35791394, 35791394]
  728 |                 sprintf(Str, "%02d:%02d:%02d", HH, MM, SS);
      |                              ^~~~~~~~~~~~~~~~
myutils.cpp:728:30: note: directive argument in the range [-59, 59]
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'const char* SecsToHHMMSS(int)' at myutils.cpp:728:10,
    inlined from 'void ProgressExit()' at myutils.cpp:943:5:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 9 and 22 bytes into a destination of size 16
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o path.o path.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o searchchime.o searchchime.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o seqdb.o seqdb.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o setnucmx.o setnucmx.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sfasta.o sfasta.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o tracebackbit.o tracebackbit.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o uchime_main.o uchime_main.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o usort.o usort.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o viterbifast.o viterbifast.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o writechhit.o writechhit.cpp
g++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -std=c++14 -g -fstack-protector-strong -Wformat -Werror=format-security -g -Wl,-z,relro -Wl,-z,now  -o uchime   addtargets2.o alignchime.o alignchimel.o alnparams.o alpha.o alpha2.o fractid.o getparents.o globalalign2.o make3way.o mx.o myutils.o path.o searchchime.o seqdb.o setnucmx.o sfasta.o tracebackbit.o uchime_main.o usort.o viterbifast.o writechhit.o  
make[3]: Leaving directory '/build/mothur-1.48.0/source/uchime_src'
source/venn.cpp: In member function 'std::vector<std::__cxx11::basic_string<char> > Venn::getPic(std::vector<SharedRAbundVector*>, std::vector<Calculator*>, std::vector<std::__cxx11::basic_string<char> >)':
source/venn.cpp:77:16: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without
   77 | vector<string> Venn::getPic(vector<SharedRAbundVector*> lookup, vector<Calculator*> vCalcs, vector<string> thisOtuLabels) {
      |                ^~~~
g++ -Wl,-z,relro -Wl,-z,now -std=c++11 -pthread  -Lsource/calculators/  -Lsource/chimera/  -Lsource/classifier/  -Lsource/clearcut/  -Lsource/commands/  -Lsource/communitytype/  -Lsource/datastructures/  -Lsource/engines/  -Lsource/metastats/  -Lsource/read/  -Lsource/svm/  -o mothur source/calculators/accuracy.o source/calculators/ace.o source/calculators/bergerparker.o source/calculators/boneh.o source/calculators/bootstrap.o source/calculators/bstick.o source/calculators/calculator.o source/calculators/canberra.o source/calculators/chao1.o source/calculators/coverage.o source/calculators/diversityutils.o source/calculators/eachgapdist.o source/calculators/eachgapignore.o source/calculators/efron.o source/calculators/erarefaction.o source/calculators/f1score.o source/calculators/fdr.o source/calculators/fn.o source/calculators/fp.o source/calculators/fpfn.o source/calculators/geom.o source/calculators/goodscoverage.o source/calculators/gower.o source/calculators/hamming.o source/calculators/heip.o source/calculators/hellinger.o source/calculators/igabundance.o source/calculators/ignoregaps.o source/calculators/igrarefaction.o source/calculators/invsimpson.o source/calculators/jackknife.o source/calculators/kimura.o source/calculators/kmerdist.o source/calculators/lnabundance.o source/calculators/lnrarefaction.o source/calculators/lnshift.o source/calculators/logsd.o source/calculators/lsabundance.o source/calculators/lsrarefaction.o source/calculators/manhattan.o source/calculators/mcc.o source/calculators/memchi2.o source/calculators/memchord.o source/calculators/memeuclidean.o source/calculators/mempearson.o source/calculators/metroig.o source/calculators/metrolognormal.o source/calculators/metrologstudent.o source/calculators/metrosichel.o source/calculators/npshannon.o source/calculators/npv.o source/calculators/odum.o source/calculators/onegapdist.o source/calculators/onegapignore.o source/calculators/parsimony.o source/calculators/ppv.o source/calculators/prng.o source/calculators/qstat.o source/calculators/sensitivity.o source/calculators/shannon.o source/calculators/shannoneven.o source/calculators/shannonrange.o source/calculators/sharedace.o source/calculators/sharedanderbergs.o source/calculators/sharedbraycurtis.o source/calculators/sharedchao1.o source/calculators/sharedjabund.o source/calculators/sharedjackknife.o source/calculators/sharedjclass.o source/calculators/sharedjest.o source/calculators/sharedjsd.o source/calculators/sharedkstest.o source/calculators/sharedkulczynski.o source/calculators/sharedkulczynskicody.o source/calculators/sharedlennon.o source/calculators/sharedmarczewski.o source/calculators/sharedmorisitahorn.o source/calculators/sharedochiai.o source/calculators/sharedrjsd.o source/calculators/sharedsobs.o source/calculators/sharedsobscollectsummary.o source/calculators/sharedsorabund.o source/calculators/sharedsorclass.o source/calculators/sharedsorest.o source/calculators/sharedthetan.o source/calculators/sharedthetayc.o source/calculators/shen.o source/calculators/siabundance.o source/calculators/simpson.o source/calculators/simpsoneven.o source/calculators/sirarefaction.o source/calculators/sishift.o source/calculators/smithwilson.o source/calculators/soergel.o source/calculators/solow.o source/calculators/spearman.o source/calculators/speciesprofile.o source/calculators/specificity.o source/calculators/structchi2.o source/calculators/structchord.o source/calculators/structeuclidean.o source/calculators/structkulczynski.o source/calculators/structpearson.o source/calculators/tn.o source/calculators/tp.o source/calculators/tptn.o source/calculators/unweighted.o source/calculators/uvest.o source/calculators/weighted.o source/calculators/whittaker.o source/chimera/bellerophon.o source/chimera/ccode.o source/chimera/chimeracheckrdp.o source/chimera/chimerarealigner.o source/chimera/chimeraslayer.o source/chimera/decalc.o source/chimera/maligner.o source/chimera/mothurchimera.o source/chimera/myPerseus.o source/chimera/pintail.o source/chimera/slayer.o source/classifier/alignnode.o source/classifier/aligntree.o source/classifier/bayesian.o source/classifier/classify.o source/classifier/kmernode.o source/classifier/kmertree.o source/classifier/knn.o source/classifier/phylosummary.o source/classifier/phylotree.o source/classifier/taxonomyequalizer.o source/classifier/taxonomynode.o source/clearcut/clearcut.o source/clearcut/cmdargs.o source/clearcut/distclearcut.o source/clearcut/dmat.o source/clearcut/fasta.o source/clearcut/getopt_long.o source/commands/aligncheckcommand.o source/commands/aligncommand.o source/commands/alignmusclecommand.o source/commands/amovacommand.o source/commands/anosimcommand.o source/commands/binsequencecommand.o source/commands/biominfocommand.o source/commands/chimerabellerophoncommand.o source/commands/chimeraccodecommand.o source/commands/chimeracheckcommand.o source/commands/chimeraperseuscommand.o source/commands/chimerapintailcommand.o source/commands/chimeraslayercommand.o source/commands/chimerauchimecommand.o source/commands/chimeravsearchcommand.o source/commands/chopseqscommand.o source/commands/classifyotucommand.o source/commands/classifyseqscommand.o source/commands/classifysvmsharedcommand.o source/commands/classifytreecommand.o source/commands/clearcutcommand.o source/commands/clustercommand.o source/commands/clusterdoturcommand.o source/commands/clusterfitcommand.o source/commands/clusterfragmentscommand.o source/commands/clustersplitcommand.o source/commands/collectcommand.o source/commands/collectsharedcommand.o source/commands/consensusseqscommand.o source/commands/cooccurrencecommand.o source/commands/corraxescommand.o source/commands/countgroupscommand.o source/commands/countseqscommand.o source/commands/createdatabasecommand.o source/commands/degapseqscommand.o source/commands/deuniqueseqscommand.o source/commands/deuniquetreecommand.o source/commands/distancecommand.o source/commands/distsharedcommand.o source/commands/diversityestimatorcommand.o source/commands/fastaqinfocommand.o source/commands/filterseqscommand.o source/commands/filtersharedcommand.o source/commands/getcoremicrobiomecommand.o source/commands/getcurrentcommand.o source/commands/getdistscommand.o source/commands/getgroupcommand.o source/commands/getgroupscommand.o source/commands/getlabelcommand.o source/commands/getlineagecommand.o source/commands/getlistcountcommand.o source/commands/getmetacommunitycommand.o source/commands/getmimarkspackagecommand.o source/commands/getoturepcommand.o source/commands/getotuscommand.o source/commands/getrabundcommand.o source/commands/getrelabundcommand.o source/commands/getsabundcommand.o source/commands/getseqscommand.o source/commands/getsharedotucommand.o source/commands/heatmapcommand.o source/commands/heatmapsimcommand.o source/commands/helpcommand.o source/commands/homovacommand.o source/commands/indicatorcommand.o source/commands/kruskalwalliscommand.o source/commands/lefsecommand.o source/commands/libshuffcommand.o source/commands/listotuscommand.o source/commands/listseqscommand.o source/commands/makebiomcommand.o source/commands/makeclrcommand.o source/commands/makecontigscommand.o source/commands/makefastqcommand.o source/commands/makefilecommand.o source/commands/makegroupcommand.o source/commands/makelefsecommand.o source/commands/makelookupcommand.o source/commands/makesharedcommand.o source/commands/mantelcommand.o source/commands/mergecountcommand.o source/commands/mergefilecommand.o source/commands/mergegroupscommand.o source/commands/mergeotuscommand.o source/commands/mergesfffilecommand.o source/commands/mergetaxsummarycommand.o source/commands/metastatscommand.o source/commands/mgclustercommand.o source/commands/mimarksattributescommand.o source/commands/newcommandtemplate.o source/commands/nmdscommand.o source/commands/nocommands.o source/commands/normalizesharedcommand.o source/commands/otuassociationcommand.o source/commands/otuhierarchycommand.o source/commands/pairwiseseqscommand.o source/commands/parsimonycommand.o source/commands/pcacommand.o source/commands/pcoacommand.o source/commands/pcrseqscommand.o source/commands/phylodiversitycommand.o source/commands/phylotypecommand.o source/commands/preclustercommand.o source/commands/primerdesigncommand.o source/commands/quitcommand.o source/commands/rarefactcommand.o source/commands/rarefactsharedcommand.o source/commands/removedistscommand.o source/commands/removegroupscommand.o source/commands/removelineagecommand.o source/commands/removeotuscommand.o source/commands/removerarecommand.o source/commands/removeseqscommand.o source/commands/renamefilecommand.o source/commands/renameseqscommand.o source/commands/reversecommand.o source/commands/screenseqscommand.o source/commands/sensspeccommand.o source/commands/seqerrorcommand.o source/commands/seqsummarycommand.o source/commands/setcurrentcommand.o source/commands/setdircommand.o source/commands/setlogfilecommand.o source/commands/setseedcommand.o source/commands/sffinfocommand.o source/commands/sffmultiplecommand.o source/commands/shhhercommand.o source/commands/shhhseqscommand.o source/commands/sortseqscommand.o source/commands/sparcccommand.o source/commands/splitabundcommand.o source/commands/splitgroupscommand.o source/commands/sracommand.o source/commands/srainfocommand.o source/commands/subsamplecommand.o source/commands/summarycommand.o source/commands/summaryqualcommand.o source/commands/summarysharedcommand.o source/commands/summarytaxcommand.o source/commands/systemcommand.o source/commands/translateseqscommand.o source/commands/treesharedcommand.o source/commands/trimflowscommand.o source/commands/trimseqscommand.o source/commands/unifracunweightedcommand.o source/commands/unifracweightedcommand.o source/commands/uniqueseqscommand.o source/commands/venncommand.o source/communitytype/communitytype.o source/communitytype/kmeans.o source/communitytype/pam.o source/communitytype/qFinderDMM.o source/datastructures/alignment.o source/datastructures/alignmentcell.o source/datastructures/alignmentdb.o source/datastructures/aminoacid.o source/datastructures/biom.o source/datastructures/biomhdf5.o source/datastructures/biomsimple.o source/datastructures/contigsreport.o source/datastructures/counttable.o source/datastructures/designmap.o source/datastructures/distancedb.o source/datastructures/fastamap.o source/datastructures/fastqread.o source/datastructures/filefile.o source/datastructures/flowdata.o source/datastructures/fullmatrix.o source/datastructures/groupmap.o source/datastructures/kmer.o source/datastructures/kmeralign.o source/datastructures/kmerdb.o source/datastructures/listvector.o source/datastructures/nameassignment.o source/datastructures/oligos.o source/datastructures/optiblastmatrix.o source/datastructures/optidata.o source/datastructures/optidb.o source/datastructures/optimatrix.o source/datastructures/optirefmatrix.o source/datastructures/ordervector.o source/datastructures/picrust.o source/datastructures/protein.o source/datastructures/proteindb.o source/datastructures/qualityscores.o source/datastructures/rabundfloatvector.o source/datastructures/rabundvector.o source/datastructures/report.o source/datastructures/sabundvector.o source/datastructures/sequence.o source/datastructures/sequencecountparser.o source/datastructures/sequencedb.o source/datastructures/sequenceparser.o source/datastructures/sffheader.o source/datastructures/sffread.o source/datastructures/sharedclrvector.o source/datastructures/sharedclrvectors.o source/datastructures/sharedlistvector.o source/datastructures/sharedordervector.o source/datastructures/sharedrabundfloatvector.o source/datastructures/sharedrabundfloatvectors.o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundvectors.o source/datastructures/sparsedistancematrix.o source/datastructures/sparsematrix.o source/datastructures/suffixdb.o source/datastructures/suffixnodes.o source/datastructures/suffixtree.o source/datastructures/taxonomy.o source/datastructures/tree.o source/datastructures/treemap.o source/datastructures/treenode.o source/engines/batchengine.o source/engines/interactengine.o source/engines/scriptengine.o source/metastats/mothurfisher.o source/metastats/mothurmetastats.o source/read/readblast.o source/read/readcluster.o source/read/readcolumn.o source/read/readphylip.o source/read/readphylipvector.o source/read/readtree.o source/read/splitmatrix.o source/read/treereader.o source/svm/svm.o  source/alignreport.o source/averagelinkage.o source/calcsparcc.o source/cluster.o source/clusterclassic.o source/collect.o source/commandfactory.o source/commandoptionparser.o source/completelinkage.o source/consensus.o source/currentfile.o source/dlibshuff.o source/fileoutput.o source/gotohoverlap.o source/heatmap.o source/heatmapsim.o source/inputdata.o source/libshuff.o source/linearalgebra.o source/mothur.o source/mothurout.o source/myseqdist.o source/nast.o source/needlemanoverlap.o source/noalign.o source/opticluster.o source/optifitcluster.o source/optionparser.o source/overlap.o source/raredisplay.o source/rarefact.o source/refchimeratest.o source/sensspeccalc.o source/seqnoise.o source/singlelinkage.o source/slibshuff.o source/subsample.o source/summary.o source/trialSwap2.o source/trimoligos.o source/utils.o source/validcalculator.o source/validparameter.o source/venn.o source/vsearchfileparser.o source/weightedlinkage.o source/wilcox.o  -lreadline
make[2]: Leaving directory '/build/mothur-1.48.0'
# source/uchime_src/mk vanished from upstream source so this should probably not be called any more)
# (cd source/uchime_src && CXX=g++ ./mk && mv uchime ../..)
make[1]: Leaving directory '/build/mothur-1.48.0'
   dh_auto_test
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make[1]: Entering directory '/build/mothur-1.48.0'
true
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Do not run dh_dwz due to:
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   dwz: Too few files for multifile optimization
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   objcopy: 'debian/mothur/usr/lib/debug/.dwz/x86_64-linux-gnu/mothur.debug': No such file
echo "   dh_dwz: objcopy --compress-debug-sections debian/mothur/usr/lib/debug/.dwz/x86_64-linux-gnu/mothur.debug returned exit code 1"
   dh_dwz: objcopy --compress-debug-sections debian/mothur/usr/lib/debug/.dwz/x86_64-linux-gnu/mothur.debug returned exit code 1
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   dh_strip -a
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dpkg-deb: building package 'mothur' in '../mothur_1.48.0-2_i386.deb'.
dpkg-deb: building package 'mothur-dbgsym' in '../mothur-dbgsym_1.48.0-2_i386.deb'.
 dpkg-genbuildinfo --build=binary -O../mothur_1.48.0-2_i386.buildinfo
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dpkg-genchanges: info: binary-only upload (no source code included)
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dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/98338/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/98338/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
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I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/98338 and its subdirectories
I: Current time: Tue Jul 16 18:23:55 +14 2024
I: pbuilder-time-stamp: 1721103835