I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 20 08:43:14 +14 2024 I: pbuilder-time-stamp: 1705689794 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pymol_2.5.0+dfsg-1.dsc] I: copying [./pymol_2.5.0+dfsg.orig.tar.xz] I: copying [./pymol_2.5.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 15 16:13:49 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pymol_2.5.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting pymol in pymol-2.5.0+dfsg dpkg-source: info: unpacking pymol_2.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pymol_2.5.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch dpkg-source: info: applying 40_mstop_movies.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23934/tmp/hooks/D01_modify_environment starting debug: Running on ionos12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 19 18:43 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/23934/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/23934/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7 ' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=064660ab325e43a3b9921100e07e6c17 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=23934 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cX55Dh2q/pbuilderrc_He2T --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cX55Dh2q/b2 --logfile b2/build.log pymol_2.5.0+dfsg-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 23 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 23 2023 more -rwsr-xr-x 1 root root 58912 Mar 23 2023 mount -rwxr-xr-x 1 root root 13856 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 9 Jan 19 18:43 sh -> /bin/bash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 23 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 23 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/23934/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, freeglut3-dev, libfreetype6-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on freeglut3-dev; however: Package freeglut3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreetype6-dev; however: Package libfreetype6-dev is not installed. pbuilder-satisfydepends-dummy depends on libglew-dev; however: Package libglew-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-opengl; however: Package python3-opengl is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5; however: Package python3-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5.qtopengl; however: Package python3-pyqt5.qtopengl is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcups2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdbus-1-3{a} libdebhelper-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype-dev{a} libfreetype6{a} libfreetype6-dev{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.2{a} libglib2.0-0{a} libglm-dev{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libinput-bin{a} libinput10{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libkpathsea6{a} liblapack3{a} libldap-2.5-0{a} libllvm15{a} libmagic-mgc{a} libmagic1{a} libmd4c0{a} libmtdev1{a} libnetcdf-dev{a} libnetcdf19{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5printsupport5{a} libqt5sql5{a} libqt5test5{a} libqt5widgets5{a} libqt5xml5{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm-dev{a} libsm6{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53-5{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxi6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-opengl{a} python3-pkg-resources{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-pyqt5.sip{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} x11proto-dev{a} xdg-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus dvisvgm javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules libx11-protocol-perl lmodern lynx pkg-config pkgconf publicsuffix qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 251 newly installed, 0 to remove and 0 not upgraded. Need to get 185 MB of archives. After unpacking 704 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 33 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 35 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.3~deb12u1 [720 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130+deb12u1 [104 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 fonts-lmodern all 2.005-1 [4540 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libglvnd0 i386 1.6.0-1 [42.7 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2+deb12u2 [782 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libdrm-common all 2.4.114-1 [7112 B] Get: 62 http://deb.debian.org/debian bookworm/main i386 libdrm2 i386 2.4.114-1+b1 [40.8 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libglapi-mesa i386 22.3.6-1+deb12u1 [35.6 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libx11-xcb1 i386 2:1.8.4-2+deb12u2 [192 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libxcb-dri2-0 i386 1.15-1 [107 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libxcb-dri3-0 i386 1.15-1 [107 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libxcb-glx0 i386 1.15-1 [124 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libxcb-present0 i386 1.15-1 [106 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libxcb-randr0 i386 1.15-1 [118 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libxcb-sync1 i386 1.15-1 [109 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libxcb-xfixes0 i386 1.15-1 [110 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libxfixes3 i386 1:6.0.0-2 [23.0 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 76 http://deb.debian.org/debian bookworm/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libdrm-amdgpu1 i386 2.4.114-1+b1 [24.1 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libpciaccess0 i386 0.17-2 [53.4 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libdrm-intel1 i386 2.4.114-1+b1 [67.9 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libdrm-nouveau2 i386 2.4.114-1+b1 [20.7 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libdrm-radeon1 i386 2.4.114-1+b1 [22.8 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libz3-4 i386 4.8.12-3.1 [7853 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libllvm15 i386 1:15.0.6-4+b1 [26.5 MB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libsensors5 i386 1:3.6.0-7.1 [35.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libgl1-mesa-dri i386 22.3.6-1+deb12u1 [7417 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libglx-mesa0 i386 22.3.6-1+deb12u1 [156 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 libglx0 i386 1.6.0-1 [36.6 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libgl1 i386 1.6.0-1 [82.1 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 libxi6 i386 2:1.8-1+b1 [86.2 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libglut3.12 i386 3.4.0-1 [139 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 x11proto-dev all 2022.1-1 [599 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libxau-dev i386 1:1.0.9-1 [23.3 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B] Get: 99 http://deb.debian.org/debian bookworm/main i386 libxcb1-dev i386 1.15-1 [185 kB] Get: 100 http://deb.debian.org/debian bookworm/main i386 libx11-dev i386 2:1.8.4-2+deb12u2 [864 kB] Get: 101 http://deb.debian.org/debian bookworm/main i386 libglx-dev i386 1.6.0-1 [15.3 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 libgl-dev i386 1.6.0-1 [100 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libglvnd-core-dev i386 1.6.0-1 [12.9 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libwayland-server0 i386 1.21.0-1 [37.4 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libgbm1 i386 22.3.6-1+deb12u1 [39.2 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libwayland-client0 i386 1.21.0-1 [29.0 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libegl-mesa0 i386 22.3.6-1+deb12u1 [124 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libegl1 i386 1.6.0-1 [35.6 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libegl-dev i386 1.6.0-1 [19.1 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libgles1 i386 1.6.0-1 [11.6 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libgles2 i386 1.6.0-1 [16.3 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libgles-dev i386 1.6.0-1 [50.4 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 libopengl0 i386 1.6.0-1 [29.2 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 libopengl-dev i386 1.6.0-1 [4924 B] Get: 115 http://deb.debian.org/debian bookworm/main i386 libglvnd-dev i386 1.6.0-1 [4688 B] Get: 116 http://deb.debian.org/debian bookworm/main i386 libgl1-mesa-dev i386 22.3.6-1+deb12u1 [14.5 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libglu1-mesa i386 9.0.2-1.1 [186 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 libglu1-mesa-dev i386 9.0.2-1.1 [230 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libxext-dev i386 2:1.3.4-1+b1 [110 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libice-dev i386 2:1.0.10-1 [70.5 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 libsm-dev i386 2:1.2.3-1 [38.8 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libxt-dev i386 1:1.2.1-1.1 [419 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 libglut-dev i386 3.4.0-1 [168 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 freeglut3-dev i386 3.4.0-1 [53.1 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 hdf5-helpers i386 1.10.8+repack1-1 [27.9 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 131 http://deb.debian.org/debian bookworm/main i386 libaec0 i386 1.0.6-1+b1 [22.4 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libsz2 i386 1.0.6-1+b1 [7884 B] Get: 133 http://deb.debian.org/debian bookworm/main i386 libaec-dev i386 1.0.6-1+b1 [21.5 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 libavahi-common-data i386 0.8-10 [107 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 libavahi-common3 i386 0.8-10 [43.5 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 libdbus-1-3 i386 1.14.10-1~deb12u1 [215 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 libavahi-client3 i386 0.8-10 [47.6 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 libbrotli-dev i386 1.0.9-2+b6 [287 kB] Get: 140 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 libcups2 i386 2.4.2-3+deb12u5 [262 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 146 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 148 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1+deb12u1 [80.7 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 150 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 152 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-10+deb12u4 [417 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-10+deb12u4 [424 kB] Get: 154 http://deb.debian.org/debian bookworm/main i386 libcurl4-gnutls-dev i386 7.88.1-10+deb12u4 [532 kB] Get: 155 http://deb.debian.org/debian bookworm/main i386 libdouble-conversion3 i386 3.2.1-1 [45.7 kB] Get: 156 http://deb.debian.org/debian bookworm/main i386 libevdev2 i386 1.13.0+dfsg-1 [32.4 kB] Get: 157 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 158 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 libpng-dev i386 1.6.39-2 [367 kB] Get: 160 http://deb.debian.org/debian bookworm/main i386 libfreetype-dev i386 2.12.1+dfsg-5 [585 kB] Get: 161 http://deb.debian.org/debian bookworm/main i386 libfreetype6-dev i386 2.12.1+dfsg-5 [46.4 kB] Get: 162 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 libglew2.2 i386 2.2.0-4+b1 [168 kB] Get: 164 http://deb.debian.org/debian bookworm/main i386 libglew-dev i386 2.2.0-4+b1 [264 kB] Get: 165 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 166 http://deb.debian.org/debian bookworm/main i386 libglm-dev all 0.9.9.8+ds-6 [185 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 168 http://deb.debian.org/debian bookworm/main i386 libgudev-1.0-0 i386 237-2 [15.7 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 170 http://deb.debian.org/debian bookworm/main i386 libhdf5-103-1 i386 1.10.8+repack1-1 [1175 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 libhdf5-cpp-103-1 i386 1.10.8+repack1-1 [136 kB] Get: 172 http://deb.debian.org/debian bookworm/main i386 libhdf5-fortran-102 i386 1.10.8+repack1-1 [101 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-100 i386 1.10.8+repack1-1 [79.3 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-fortran-100 i386 1.10.8+repack1-1 [46.2 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-cpp-100 i386 1.10.8+repack1-1 [26.0 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB] Get: 178 http://deb.debian.org/debian bookworm/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 libssl-dev i386 3.0.11-1~deb12u2 [2489 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 libhdf5-dev i386 1.10.8+repack1-1 [2754 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 182 http://deb.debian.org/debian bookworm/main i386 libwacom-common all 2.6.0-1 [58.4 kB] Get: 183 http://deb.debian.org/debian bookworm/main i386 libwacom9 i386 2.6.0-1 [23.1 kB] Get: 184 http://deb.debian.org/debian bookworm/main i386 libinput-bin i386 1.22.1-1 [23.5 kB] Get: 185 http://deb.debian.org/debian bookworm/main i386 libmtdev1 i386 1.1.6-1 [23.5 kB] Get: 186 http://deb.debian.org/debian bookworm/main i386 libinput10 i386 1.22.1-1 [140 kB] Get: 187 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 188 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 189 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 190 http://deb.debian.org/debian bookworm/main i386 libkpathsea6 i386 2022.20220321.62855-5.1+deb12u1 [155 kB] Get: 191 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 192 http://deb.debian.org/debian bookworm/main i386 libmd4c0 i386 0.4.8-1 [44.9 kB] Get: 193 http://deb.debian.org/debian bookworm/main i386 libnetcdf19 i386 1:4.9.0-3+b1 [526 kB] Get: 194 http://deb.debian.org/debian bookworm/main i386 libxml2-dev i386 2.9.14+dfsg-1.3~deb12u1 [846 kB] Get: 195 http://deb.debian.org/debian bookworm/main i386 libnetcdf-dev i386 1:4.9.0-3+b1 [113 kB] Get: 196 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 197 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 198 http://deb.debian.org/debian bookworm/main i386 libpcre2-16-0 i386 10.42-1 [243 kB] Get: 199 http://deb.debian.org/debian bookworm/main i386 libptexenc1 i386 2022.20220321.62855-5.1+deb12u1 [44.8 kB] Get: 200 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 201 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 202 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 203 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B] Get: 204 http://deb.debian.org/debian bookworm/main i386 shared-mime-info i386 2.2-1 [730 kB] Get: 205 http://deb.debian.org/debian bookworm/main i386 libqt5core5a i386 5.15.8+dfsg-11 [2655 kB] Get: 206 http://deb.debian.org/debian bookworm/main i386 libqt5dbus5 i386 5.15.8+dfsg-11 [235 kB] Get: 207 http://deb.debian.org/debian bookworm/main i386 libqt5network5 i386 5.15.8+dfsg-11 [765 kB] Get: 208 http://deb.debian.org/debian bookworm/main i386 libxcb-icccm4 i386 0.4.1-1.1 [28.1 kB] Get: 209 http://deb.debian.org/debian bookworm/main i386 libxcb-util1 i386 0.4.0-1+b1 [23.6 kB] Get: 210 http://deb.debian.org/debian bookworm/main i386 libxcb-image0 i386 0.4.0-2 [23.4 kB] Get: 211 http://deb.debian.org/debian bookworm/main i386 libxcb-keysyms1 i386 0.4.0-1+b2 [16.7 kB] Get: 212 http://deb.debian.org/debian bookworm/main i386 libxcb-render-util0 i386 0.3.9-1+b1 [18.7 kB] Get: 213 http://deb.debian.org/debian bookworm/main i386 libxcb-shape0 i386 1.15-1 [106 kB] Get: 214 http://deb.debian.org/debian bookworm/main i386 libxcb-xinerama0 i386 1.15-1 [105 kB] Get: 215 http://deb.debian.org/debian bookworm/main i386 libxcb-xinput0 i386 1.15-1 [134 kB] Get: 216 http://deb.debian.org/debian bookworm/main i386 libxcb-xkb1 i386 1.15-1 [131 kB] Get: 217 http://deb.debian.org/debian bookworm/main i386 xkb-data all 2.35.1-1 [764 kB] Get: 218 http://deb.debian.org/debian bookworm/main i386 libxkbcommon0 i386 1.5.0-1 [112 kB] Get: 219 http://deb.debian.org/debian bookworm/main i386 libxkbcommon-x11-0 i386 1.5.0-1 [16.5 kB] Get: 220 http://deb.debian.org/debian bookworm/main i386 libqt5gui5 i386 5.15.8+dfsg-11 [5894 kB] Get: 221 http://deb.debian.org/debian bookworm/main i386 libqt5widgets5 i386 5.15.8+dfsg-11 [2659 kB] Get: 222 http://deb.debian.org/debian bookworm/main i386 libqt5xml5 i386 5.15.8+dfsg-11 [134 kB] Get: 223 http://deb.debian.org/debian bookworm/main i386 libqt5designer5 i386 5.15.8-2 [2865 kB] Get: 224 http://deb.debian.org/debian bookworm/main i386 libqt5sql5 i386 5.15.8+dfsg-11 [134 kB] Get: 225 http://deb.debian.org/debian bookworm/main i386 libqt5help5 i386 5.15.8-2 [169 kB] Get: 226 http://deb.debian.org/debian bookworm/main i386 libqt5opengl5 i386 5.15.8+dfsg-11 [162 kB] Get: 227 http://deb.debian.org/debian bookworm/main i386 libqt5printsupport5 i386 5.15.8+dfsg-11 [219 kB] Get: 228 http://deb.debian.org/debian bookworm/main i386 libqt5test5 i386 5.15.8+dfsg-11 [152 kB] Get: 229 http://deb.debian.org/debian bookworm/main i386 libsynctex2 i386 2022.20220321.62855-5.1+deb12u1 [62.5 kB] Get: 230 http://deb.debian.org/debian bookworm/main i386 libteckit0 i386 2.5.11+ds1-1+b1 [282 kB] Get: 231 http://deb.debian.org/debian bookworm/main i386 libtexlua53-5 i386 2022.20220321.62855-5.1+deb12u1 [126 kB] Get: 232 http://deb.debian.org/debian bookworm/main i386 libxmu6 i386 2:1.1.3-3 [62.5 kB] Get: 233 http://deb.debian.org/debian bookworm/main i386 libxpm4 i386 1:3.5.12-1.1+deb12u1 [50.4 kB] Get: 234 http://deb.debian.org/debian bookworm/main i386 libxaw7 i386 2:1.0.14-1 [209 kB] Get: 235 http://deb.debian.org/debian bookworm/main i386 libzzip-0-13 i386 0.13.72+dfsg.1-1.1 [60.1 kB] Get: 236 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 237 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 238 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 239 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B] Get: 240 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 241 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 242 http://deb.debian.org/debian bookworm/main i386 python3-opengl all 3.1.6+dfsg-3 [605 kB] Get: 243 http://deb.debian.org/debian bookworm/main i386 python3-pyqt5.sip i386 12.11.1-1 [57.9 kB] Get: 244 http://deb.debian.org/debian bookworm/main i386 python3-pyqt5 i386 5.15.9+dfsg-1 [2254 kB] Get: 245 http://deb.debian.org/debian bookworm/main i386 python3-pyqt5.qtopengl i386 5.15.9+dfsg-1 [188 kB] Get: 246 http://deb.debian.org/debian bookworm/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 247 http://deb.debian.org/debian bookworm/main i386 tex-common all 6.18 [32.5 kB] Get: 248 http://deb.debian.org/debian bookworm/main i386 texlive-binaries i386 2022.20220321.62855-5.1+deb12u1 [8537 kB] Get: 249 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 250 http://deb.debian.org/debian bookworm/main i386 texlive-base all 2022.20230122-3 [21.9 MB] Get: 251 http://deb.debian.org/debian bookworm/main i386 texlive-latex-base all 2022.20230122-3 [1182 kB] Fetched 185 MB in 13s (13.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18472 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18906 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../003-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../006-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../009-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. 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Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../021-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../024-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../026-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../027-libxml2_2.9.14+dfsg-1.3~deb12u1_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../032-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../033-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../034-dh-python_5.20230130+deb12u1_all.deb ... Unpacking dh-python (5.20230130+deb12u1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../035-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../036-libpng16-16_1.6.39-2_i386.deb ... Unpacking libpng16-16:i386 (1.6.39-2) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../037-libfreetype6_2.12.1+dfsg-5_i386.deb ... Unpacking libfreetype6:i386 (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../038-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../039-fontconfig-config_2.14.1-4_i386.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../040-libfontconfig1_2.14.1-4_i386.deb ... Unpacking libfontconfig1:i386 (2.14.1-4) ... Selecting previously unselected package fontconfig. Preparing to unpack .../041-fontconfig_2.14.1-4_i386.deb ... Unpacking fontconfig (2.14.1-4) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package libglvnd0:i386. Preparing to unpack .../043-libglvnd0_1.6.0-1_i386.deb ... Unpacking libglvnd0:i386 (1.6.0-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../044-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../045-libbsd0_0.11.7-2_i386.deb ... Unpacking libbsd0:i386 (0.11.7-2) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../046-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../047-libxcb1_1.15-1_i386.deb ... Unpacking libxcb1:i386 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../048-libx11-data_2%3a1.8.4-2+deb12u2_all.deb ... Unpacking libx11-data (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../049-libx11-6_2%3a1.8.4-2+deb12u2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../050-libdrm-common_2.4.114-1_all.deb ... Unpacking libdrm-common (2.4.114-1) ... Selecting previously unselected package libdrm2:i386. Preparing to unpack .../051-libdrm2_2.4.114-1+b1_i386.deb ... Unpacking libdrm2:i386 (2.4.114-1+b1) ... Selecting previously unselected package libglapi-mesa:i386. Preparing to unpack .../052-libglapi-mesa_22.3.6-1+deb12u1_i386.deb ... Unpacking libglapi-mesa:i386 (22.3.6-1+deb12u1) ... Selecting previously unselected package libx11-xcb1:i386. Preparing to unpack .../053-libx11-xcb1_2%3a1.8.4-2+deb12u2_i386.deb ... Unpacking libx11-xcb1:i386 (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libxcb-dri2-0:i386. Preparing to unpack .../054-libxcb-dri2-0_1.15-1_i386.deb ... Unpacking libxcb-dri2-0:i386 (1.15-1) ... Selecting previously unselected package libxcb-dri3-0:i386. Preparing to unpack .../055-libxcb-dri3-0_1.15-1_i386.deb ... Unpacking libxcb-dri3-0:i386 (1.15-1) ... Selecting previously unselected package libxcb-glx0:i386. Preparing to unpack .../056-libxcb-glx0_1.15-1_i386.deb ... Unpacking libxcb-glx0:i386 (1.15-1) ... Selecting previously unselected package libxcb-present0:i386. Preparing to unpack .../057-libxcb-present0_1.15-1_i386.deb ... Unpacking libxcb-present0:i386 (1.15-1) ... Selecting previously unselected package libxcb-randr0:i386. Preparing to unpack .../058-libxcb-randr0_1.15-1_i386.deb ... Unpacking libxcb-randr0:i386 (1.15-1) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../059-libxcb-shm0_1.15-1_i386.deb ... Unpacking libxcb-shm0:i386 (1.15-1) ... Selecting previously unselected package libxcb-sync1:i386. Preparing to unpack .../060-libxcb-sync1_1.15-1_i386.deb ... Unpacking libxcb-sync1:i386 (1.15-1) ... Selecting previously unselected package libxcb-xfixes0:i386. Preparing to unpack .../061-libxcb-xfixes0_1.15-1_i386.deb ... Unpacking libxcb-xfixes0:i386 (1.15-1) ... 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Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxcb-xfixes0:i386 (1.15-1) ... Setting up libxau-dev:i386 (1:1.0.9-1) ... Setting up libxcb-xinput0:i386 (1.15-1) ... Setting up libice-dev:i386 (2:1.0.10-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up libwacom9:i386 (2.6.0-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libxcb-glx0:i386 (1.15-1) ... Setting up libedit2:i386 (3.1-20221030-2) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libpng-dev:i386 (1.6.39-2) ... Setting up libxcb-keysyms1:i386 (0.4.0-1+b2) ... Setting up libaec-dev:i386 (1.0.6-1+b1) ... Setting up libxcb-shape0:i386 (1.15-1) ... Setting up libavahi-common3:i386 (0.8-10) ... Setting up libjpeg-dev:i386 (1:2.1.5-2) ... Setting up libxcb-render-util0:i386 (0.3.9-1+b1) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libxcb-icccm4:i386 (0.4.1-1.1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up libxcb-util1:i386 (0.4.0-1+b1) ... Setting up libinput-bin (1.22.1-1) ... Setting up libxcb-xkb1:i386 (1.15-1) ... Setting up libxcb-image0:i386 (0.4.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:i386 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up libxml2-dev:i386 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libxcb-xinerama0:i386 (1.15-1) ... Setting up libptexenc1:i386 (2022.20220321.62855-5.1+deb12u1) ... Setting up libfreetype6:i386 (2.12.1+dfsg-5) ... Setting up libxcb-sync1:i386 (1.15-1) ... Setting up shared-mime-info (2.2-1) ... Setting up libxkbcommon-x11-0:i386 (1.5.0-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libqt5core5a:i386 (5.15.8+dfsg-11) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libxcb-dri2-0:i386 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:i386 (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libqt5dbus5:i386 (5.15.8+dfsg-11) ... Setting up libxcb-randr0:i386 (1.15-1) ... Setting up libllvm15:i386 (1:15.0.6-4+b1) ... Setting up libcurl4:i386 (7.88.1-10+deb12u4) ... Setting up libx11-6:i386 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up libqt5test5:i386 (5.15.8+dfsg-11) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libavahi-client3:i386 (0.8-10) ... Setting up libdrm-amdgpu1:i386 (2.4.114-1+b1) ... Setting up libxcb-dri3-0:i386 (1.15-1) ... Setting up libinput10:i386 (1.22.1-1) ... Setting up libpaper1:i386 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libx11-xcb1:i386 (2:1.8.4-2+deb12u2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:i386 (2.4.114-1+b1) ... Setting up libxcb1-dev:i386 (1.15-1) ... Setting up libxpm4:i386 (1:3.5.12-1.1+deb12u1) ... Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up libgbm1:i386 (22.3.6-1+deb12u1) ... Setting up libsm-dev:i386 (2:1.2.3-1) ... Setting up libdrm-radeon1:i386 (2.4.114-1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libdrm-intel1:i386 (2.4.114-1+b1) ... Setting up libgl1-mesa-dri:i386 (22.3.6-1+deb12u1) ... Setting up libx11-dev:i386 (2:1.8.4-2+deb12u2) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (7.88.1-10+deb12u4) ... Setting up libpaper-utils (1.1.29) ... Setting up libcurl4-gnutls-dev:i386 (7.88.1-10+deb12u4) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.16.0-7) ... Setting up libqt5network5:i386 (5.15.8+dfsg-11) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up libfreetype-dev:i386 (2.12.1+dfsg-5) ... Setting up libqt5sql5:i386 (5.15.8+dfsg-11) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libqt5xml5:i386 (5.15.8+dfsg-11) ... Setting up libegl-mesa0:i386 (22.3.6-1+deb12u1) ... Setting up libxfixes3:i386 (1:6.0.0-2) ... Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up libxext-dev:i386 (2:1.3.4-1+b1) ... Setting up libcups2:i386 (2.4.2-3+deb12u5) ... Setting up libhdf5-103-1:i386 (1.10.8+repack1-1) ... Setting up libhdf5-cpp-103-1:i386 (1.10.8+repack1-1) ... Setting up libegl1:i386 (1.6.0-1) ... Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up libhdf5-hl-100:i386 (1.10.8+repack1-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxmu6:i386 (2:1.1.3-3) ... Setting up libglx-mesa0:i386 (22.3.6-1+deb12u1) ... Setting up libpython3.11:i386 (3.11.2-6) ... Setting up libxi6:i386 (2:1.8-1+b1) ... Setting up libglx0:i386 (1.6.0-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libxaw7:i386 (2:1.0.14-1) ... Setting up libfreetype6-dev:i386 (2.12.1+dfsg-5) ... Setting up libhdf5-hl-cpp-100:i386 (1.10.8+repack1-1) ... Setting up libgl1:i386 (1.6.0-1) ... Setting up libxt-dev:i386 (1:1.2.1-1.1) ... Setting up libpython3.11-dev:i386 (3.11.2-6) ... Setting up libglut3.12:i386 (3.4.0-1) ... Setting up libhdf5-fortran-102:i386 (1.10.8+repack1-1) ... Setting up libglew2.2:i386 (2.2.0-4+b1) ... Setting up libnetcdf19:i386 (1:4.9.0-3+b1) ... Setting up python3-pyqt5.sip (12.11.1-1) ... Setting up texlive-binaries (2022.20220321.62855-5.1+deb12u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libhdf5-hl-fortran-100:i386 (1.10.8+repack1-1) ... Setting up libglx-dev:i386 (1.6.0-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgl-dev:i386 (1.6.0-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130+deb12u1) ... Setting up libpython3-dev:i386 (3.11.2-1+b1) ... Setting up libegl-dev:i386 (1.6.0-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up libqt5gui5:i386 (5.15.8+dfsg-11) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libqt5widgets5:i386 (5.15.8+dfsg-11) ... Setting up python3-opengl (3.1.6+dfsg-3) ... Setting up libqt5help5:i386 (5.15.8-2) ... Setting up libqt5printsupport5:i386 (5.15.8+dfsg-11) ... Setting up texlive-latex-base (2022.20230122-3) ... Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libglu1-mesa-dev:i386 (9.0.2-1.1) ... Setting up libnetcdf-dev (1:4.9.0-3+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up libqt5opengl5:i386 (5.15.8+dfsg-11) ... Setting up libgles-dev:i386 (1.6.0-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up libqt5designer5:i386 (5.15.8-2) ... Setting up libglvnd-dev:i386 (1.6.0-1) ... Setting up libglew-dev:i386 (2.2.0-4+b1) ... Setting up libgl1-mesa-dev:i386 (22.3.6-1+deb12u1) ... Setting up libglut-dev:i386 (3.4.0-1) ... Setting up python3-pyqt5 (5.15.9+dfsg-1) ... Setting up python3-pyqt5.qtopengl (5.15.9+dfsg-1) ... Setting up freeglut3-dev:i386 (3.4.0-1) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/23934/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for bookworm I: user script /srv/workspace/pbuilder/23934/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/pymol-2.5.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pymol_2.5.0+dfsg-1_source.changes dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 2.5.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /build/reproducible-path/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running clean removing '/build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/reproducible-path/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /build/reproducible-path/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running build running build_py creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/io.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/place.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/cpv.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/sdf.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/xyz.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mmd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/gms.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mol2.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/brick.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mol.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/pdb.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/pkl.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/models.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/cc1.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/cif.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mass.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/lst.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/charge.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mae.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/map.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/arc.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/solvate.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/bonds.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fast creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fragments creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/demo creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/startup creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/morphing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/selecting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/seqalign.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/invocation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/setting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/fitting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/cmd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/mpeg_encode.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/parsing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/menu.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/computing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/parser.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/xray.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/cgo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/commanding.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/shortcut_dict.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/editing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/callback.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/xwin.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/controlling.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/editor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/save_shortcut.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/completing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/keywords.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/querying.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/movie.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/headering.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/exporting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/helping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/__main__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/rpc.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/constants.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/selector.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/api.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/internal.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/vfont.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/checking.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/shortcut_manager.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/creating.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/preset.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/viewing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/util.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/moving.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/locking.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/importing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/povray.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/externing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/stereochemistry creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/openvr.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/shortcut_menu_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2 copying modules/pmg_qt/forms/pluginitem.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/shortcut_menu.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/create_shortcut.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/help_shortcut.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/change_confirm.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/askpartial.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-i386-3.11 creating build/temp.linux-i386-3.11/build creating build/temp.linux-i386-3.11/build/generated creating build/temp.linux-i386-3.11/contrib creating build/temp.linux-i386-3.11/contrib/uiuc creating build/temp.linux-i386-3.11/contrib/uiuc/plugins creating build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-i386-3.11/layer0 creating build/temp.linux-i386-3.11/layer1 creating build/temp.linux-i386-3.11/layer2 creating build/temp.linux-i386-3.11/layer3 creating build/temp.linux-i386-3.11/layer4 creating build/temp.linux-i386-3.11/layer5 creating build/temp.linux-i386-3.11/ov creating build/temp.linux-i386-3.11/ov/src i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-i386-3.11/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 64 | fread(magicchar,sizeof(char),4,fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fread(&igarb,sizeof(int),1,fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 273 | if(ok) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 413 | return ok; | ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 84 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] 103 | int i, numatoms; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'write_timestep': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fread(&filen, sizeof(namdbin_int32), 1, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure': contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 782 | if (strlen(atoms[i].type) > fw) { | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function] 103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) { | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function] 55 | static int fort_get_endian_reclen(int reclen, int word0, int word1, | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function] 36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function 'read_tinker_structure': contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 103 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation] 119 | strncpy(tmp, record, PDB_RECORD_LENGTH); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation] 144 | strncpy(numstr, record + 30, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation] 149 | strncpy(numstr+10, record + 38, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation] 154 | strncpy(numstr+20, record + 46, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 159 | strncpy(numstr+30, record + 54, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 164 | strncpy(numstr+40, record + 60, 6); | ^ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_structure': contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 730 | if (len > sizeof(name)) { | ^ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_timestep': contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) { | ^ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function 'read_pdb_structure': contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation] 299 | strncpy(name, record + 12, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation] 304 | strncpy(altloc, record + 16, 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation] 308 | strncpy(resname, record + 17, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation] 317 | strncpy(resid, record + 22, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 159 | strncpy(numstr+30, record + 54, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 164 | strncpy(numstr+40, record + 60, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation] 330 | strncpy(segname, record + 72, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: '__builtin_strncpy' output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation] 339 | strncpy(elementsymbol, record + 76, 2); | ^ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 175 | fgets(readbuf, 1023, cube->fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 181 | fgets(readbuf, 1023, cube->fd); // skip second header line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 337 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 339 | fscanf(cube->fd, "%d", &cube->nsets); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 344 | fscanf(cube->fd, "%d", &orb); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 426 | fgets(buf, n, mf->f); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 102 | fread(&headersize, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_readline': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 279 | for (i = 0; i < strlen(line); ++i) { | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function 'open_pdb_read': contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: '__builtin_strncpy' output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation] 190 | strncpy(date, record + 50, 9); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation] 200 | strncpy(pdbcode, record + 62, 4); | ^ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 278 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 297 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 357 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 241 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 164 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 176 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 183 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 970 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 971 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1113 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1114 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1511 | fread(skip, 1, 8, fp); | ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 619 | fscanf(data->file, "%*s %f %f %f", &x, &y, &z); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 79 | fscanf(fd, "%3s", keyWord); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 123 | fscanf(fd, " %s %f", keyWord, &prod); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 128 | fscanf(fd, " %s %f", keyWord, &plus); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fscanf(fd, " %s %f", keyWord, &sigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable] 443 | int i, uid; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable] 484 | int i, count, atomdata, pos, idx, xyzcount, j; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable] 503 | char oldChain[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable] 803 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable] 807 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable] 811 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable] 822 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable] 884 | int test = parser->nbonds + bnum; | ^~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable] 984 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable] 988 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable] 991 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable] 1002 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable] 1409 | FILE* fd; | ^~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fgets(readbuf, 13, edm->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 44 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 224 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 174 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 180 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 189 | for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 194 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size); | ~~^ ~~ | | | | long int fio_size_t {aka long long int} | %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size); | ~~^ ~~~~ | | | | long int fio_size_t {aka long long int} | %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~~~~~ | | | fio_size_t {aka long long int} i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 275 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 289 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 127 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 74 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 82 | fgets(line, LINESIZE, fd); // Read the molecule info | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(line, LINESIZE, fd); // Read the charge_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdheader': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 222 | if (input_integer[0] != dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] 546 | fio_size_t readlen; /* number of bytes actually read */ | ^~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: 'fio_write_str' defined but not used [-Wunused-function] 609 | static int fio_write_str(fio_fd fd, const char *str) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: 'fio_read_int32' defined but not used [-Wunused-function] 605 | static int fio_read_int32(fio_fd fd, int *i) { | ^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 339 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 344 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 349 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 363 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 266 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 268 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 272 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 295 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 305 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 169 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 179 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 182 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 210 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 213 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 224 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 226 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 230 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 245 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 127 | sprintf(atom->resname, "%d", resid); | ^~ In function 'read_car_structure_line', inlined from 'read_car_structure' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] 127 | sprintf(atom->resname, "%d", resid); | ^~~~ In file included from /usr/include/stdio.h:906, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: In function 'sprintf', inlined from 'read_car_structure_line' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5, inlined from 'read_car_structure' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 150 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 71 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 75 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 545 | for (i=0; ifile, " Ene= %f\n", &orbenergy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 1166 | fscanf(data->file, " Spin= %s\n", spin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 1167 | fscanf(data->file, " Occup= %f\n", &occu); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 840 | fgets(readbuf, 1024, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 304 | fgets(symData, 81, fd); | ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 224 | fscanf(data->file, "%d", &natm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function] 1097 | static void whereami(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function] 1077 | static void thisline(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function] 1006 | static int have_keyline(FILE *file, const char *keystring1, | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function] 711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function] 585 | static void print_matrix4(const float mat[16]) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function] 507 | static void del_wavefunction(qm_timestep_t *ts) { | ^~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function] 490 | static void replace_wavefunction(qm_timestep_t *ts, int n) { | ^~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] 109 | static float get_pte_vdw_radius(const int idx) | ^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] 102 | static float get_pte_mass(const int idx) | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] 95 | static const char *get_pte_label(const int idx) | ^~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 257 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 275 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 289 | fscanf(file, " %d", &cur); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 368 | fgets(sdum, 512, file); | ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf(file, "%s\n", sdum); // "%FLAG" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 399 | fgets(prm->title, sizeof(prm->title), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 427 | fgets(sdum, sizeof(sdum), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 439 | fscanf(file,parm7, | ~~~~~~^~~~~~~~~~~~ 440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 | &prm->Jparm, &prm->Nparm); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 443 | fscanf(file, parm7, | ~~~~~~^~~~~~~~~~~~~ 444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 | &prm->Natyp, &prm->Nphb); | ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 451 | fscanf(file,"%8d",&prm->Numextra); //BB | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 79 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 239 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 242 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_structure': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 350 | strncpy(atom->type, atname, sizeof(atom->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 351 | strncpy(atom->name, atname, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 317 | strncpy(atom->name, atname, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation] 326 | strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type)); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 545 | for (i=0; iCharges[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 444 | fscanf(file, " " DBLFMT, &prm->Masses[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 510 | fscanf(file, " " DBLFMT, &prm->Rk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 517 | fscanf(file, " " DBLFMT, &prm->Req[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 524 | fscanf(file, " " DBLFMT, &prm->Tk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 531 | fscanf(file, " " DBLFMT, &prm->Teq[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 538 | fscanf(file, " " DBLFMT, &prm->Pk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 545 | fscanf(file, " " DBLFMT, &prm->Pn[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 552 | fscanf(file, " " DBLFMT, &prm->Phase[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 559 | fscanf(file, " " DBLFMT, &prm->Solty[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 756 | fscanf(file, " " DBLFMT, &prm->HB12[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 763 | fscanf(file, " " DBLFMT, &prm->HB6[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 771 | fscanf(file, " " DBLFMT, &H[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 | &prm->Natcap, &prm->Cutcap, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 | &prm->Xcap, &prm->Ycap, &prm->Zcap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 238 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 150 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 71 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 75 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 292 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 295 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | fread(intHeader, sizeof(int), 5, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 82 | fread(floatHeader, sizeof(float), 6, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 669 | fgets(fbuffer, 1024, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | fgets(fbuffer, 1024, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'read_gamess_rundata': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 615 | strncpy(sys_data->basis_string, data->basis_string, | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: '__builtin_strncpy' output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation] 620 | strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 621 | strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 622 | strncpy(sys_data->version_string, data->version_string, | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_coordinates': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 1618 | strncpy(atm->type, atname, sizeof(atm->type)); | ^ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size); | ~~^ ~~ | | | | long int fio_size_t {aka long long int} | %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size); | ~~^ ~~~~ | | | | long int fio_size_t {aka long long int} | %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~~~~~ | | | fio_size_t {aka long long int} i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 362 | strncpy(atom->name, buf, sizeof(atom->name)); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] 360 | strncpy(tmptype, atom->type, sizeof(atom->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 232 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 246 | for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 249 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 195 | for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 198 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 203 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 238 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 408 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 442 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 444 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 446 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 448 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 450 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 473 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 508 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable] 459 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable] 1407 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable] 1541 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 267 | strncpy(atom->name, buf, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1629 | fread (&len, sizeof(int), 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1631 | fread (str, len, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2057 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2063 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2069 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2075 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2081 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2087 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2093 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2099 | fread (ptr, 8, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 1422 | strncat(data->basis_string, &data->gbasis[3], 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 1411 | strncat(data->basis_string, &data->gbasis[2], 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 286 | fread(datablock, total * sizeof(float), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 545 | for (i=0; ifile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 228 | for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 233 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 89 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 121 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 162 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 171 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 91 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 116 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 132 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 149 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 161 | fgets(line, 80, infile); //one more read to keep us in sync | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 170 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 217 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 328 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 346 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 355 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 419 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 194 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 203 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 59 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function 'read_xyz_structure': i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Deferred.cpp -o build/temp.linux-i386-3.11/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 133 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Block.cpp -o build/temp.linux-i386-3.11/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_input_structure': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 1682 | strncpy(atm->type, atname, sizeof(atm->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 139 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 144 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 86 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Err.cpp -o build/temp.linux-i386-3.11/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-i386-3.11/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-i386-3.11/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-i386-3.11/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_contrl': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation] 1981 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] 147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", | ^~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_contrl_firefly': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation] 1818 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry)); | ^ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_open_file_read': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 538 | strncat(msg, keyword, 200); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 629 | strncat(msg, keyword, 200); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_proc_mem.isra': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: '__builtin_strncpy' output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation] 1279 | strncpy(data->memory,&word[2][0],sizeof(data->memory)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 1272 | strncpy(data->memory,trimright(temp),sizeof(data->memory)); | ^ layer0/MemoryUsage.cpp: In function 'size_t pymol::memory_usage()': layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ^~~~~~~~~ layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-i386-3.11/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'get_traj_frame.constprop': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: '__builtin_strncpy' output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation] 819 | strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10); | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Feedback.cpp -o build/temp.linux-i386-3.11/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-i386-3.11/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'read_pqr_timestep': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 109 | strncpy(tmp, record, PQR_RECORD_LENGTH); | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'read_pqr_structure': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation] 137 | strncpy(name, record+12, 4); name[4] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation] 138 | strncpy(resname, record+17, 4); resname[4] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation] 139 | strncpy(chain, record+21, 1); chain[1] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation] 140 | strncpy(resid, record+22, 4); resid[4] = 0; | ^ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util.cpp -o build/temp.linux-i386-3.11/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] 1904 | int last_ctnumber = -1; | ^~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 288 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 297 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 365 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 387 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 395 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 455 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 241 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 250 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-i386-3.11/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 186 | fread(line3, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH' 284 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 285 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH' 291 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH' 305 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 306 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH' 307 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH' 311 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH' 313 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH' 318 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH' 320 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH' 328 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 329 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH' 330 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH' 354 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 355 | fread(vertex, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH' 356 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH' 357 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 358 | fread(access, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH' 359 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH' 360 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 361 | fread(normal, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH' 362 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH' 371 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fread(triangle, 3 * sizeof(int), ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH' 373 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH' 374 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 375 | fread(properties, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH' 394 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 395 | fread(striangle, sizeof(short), 3 * ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH' 396 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH' 397 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 398 | fread(properties, sizeof(float), 3 * nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Field.cpp -o build/temp.linux-i386-3.11/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/os_gl.cpp -o build/temp.linux-i386-3.11/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util2.cpp -o build/temp.linux-i386-3.11/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-i386-3.11/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Color.cpp -o build/temp.linux-i386-3.11/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Parse.cpp -o build/temp.linux-i386-3.11/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Basis.cpp -o build/temp.linux-i386-3.11/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(sub, "%03x/", i); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646] 714 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:906, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: In function 'int sprintf(char*, const char*, ...)', inlined from 'void DDmkdir(const std::string&, mode_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 722 | sprintf(subsub, "%03x", j); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646] 722 | sprintf(subsub, "%03x", j); | ^~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'void DDmkdir(const std::string&, mode_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-i386-3.11/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const std::string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 675 | sprintf(answer, "%03x/", d1); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string DDreldir(const std::string&, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13, inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const std::string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function 'std::string DDreldir(const std::string&, int, int)', inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string DDreldir(const std::string&, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13, inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Sphere.cpp -o build/temp.linux-i386-3.11/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Vector.cpp -o build/temp.linux-i386-3.11/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-i386-3.11/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-i386-3.11/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Crystal.cpp -o build/temp.linux-i386-3.11/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/File.cpp -o build/temp.linux-i386-3.11/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-i386-3.11/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-i386-3.11/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Word.cpp -o build/temp.linux-i386-3.11/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-i386-3.11/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Map.cpp -o build/temp.linux-i386-3.11/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ButMode.cpp -o build/temp.linux-i386-3.11/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-i386-3.11/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ortho.cpp -o build/temp.linux-i386-3.11/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-i386-3.11/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-i386-3.11/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-i386-3.11/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ray.cpp -o build/temp.linux-i386-3.11/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Texture.cpp -o build/temp.linux-i386-3.11/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontType.cpp -o build/temp.linux-i386-3.11/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Match.cpp -o build/temp.linux-i386-3.11/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-i386-3.11/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/CGO.cpp -o build/temp.linux-i386-3.11/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Matrix.cpp -o build/temp.linux-i386-3.11/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tracker.cpp -o build/temp.linux-i386-3.11/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Movie.cpp -o build/temp.linux-i386-3.11/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': layer1/Ray.cpp:1535:20: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] 1535 | "%s" | ^~ ...... 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~ layer1/Ray.cpp:1530:18: note: 'sprintf' output between 116 and 3302 bytes into a destination of size 1024 1530 | sprintf(buffer, | ~~~~~~~^~~~~~~~ 1531 | "Transform {\n" | ~~~~~~~~~~~~~~~ 1532 | " translation %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1534 | " children [\n" | ~~~~~~~~~~~~~~~ 1535 | "%s" | ~~~~ 1536 | " ]\n" | ~~~~~~ 1537 | "}\n", | ~~~~~~ 1538 | vert2[0] - mid[0], | ~~~~~~~~~~~~~~~~~~ 1539 | vert2[1] - mid[1], | ~~~~~~~~~~~~~~~~~~ 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Triangle.cpp -o build/temp.linux-i386-3.11/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-i386-3.11/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/P.cpp -o build/temp.linux-i386-3.11/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-i386-3.11/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-i386-3.11/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-i386-3.11/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Wizard.cpp -o build/temp.linux-i386-3.11/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-i386-3.11/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Seq.cpp -o build/temp.linux-i386-3.11/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Control.cpp -o build/temp.linux-i386-3.11/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-i386-3.11/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/Wizard.cpp: In member function 'virtual int CWizard::release(int, int, int, int)': layer1/Wizard.cpp:571:18: warning: unused variable 'wiz' [-Wunused-variable] 571 | if (auto wiz = WizardGet(G)) { | ^~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i386-3.11/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-i386-3.11/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-i386-3.11/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PConv.cpp -o build/temp.linux-i386-3.11/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Setting.cpp -o build/temp.linux-i386-3.11/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-i386-3.11/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-i386-3.11/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Extrude.cpp -o build/temp.linux-i386-3.11/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Rep.cpp -o build/temp.linux-i386-3.11/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Text.cpp -o build/temp.linux-i386-3.11/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-i386-3.11/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-i386-3.11/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Picking.cpp -o build/temp.linux-i386-3.11/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Scene.cpp -o build/temp.linux-i386-3.11/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Pop.cpp -o build/temp.linux-i386-3.11/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-i386-3.11/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-i386-3.11/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-i386-3.11/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Font.cpp -o build/temp.linux-i386-3.11/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-i386-3.11/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-i386-3.11/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i386-3.11/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-i386-3.11/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-i386-3.11/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-i386-3.11/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-i386-3.11/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-i386-3.11/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-i386-3.11/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-i386-3.11/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-i386-3.11/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-i386-3.11/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-i386-3.11/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifFile.cpp -o build/temp.linux-i386-3.11/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': layer2/ObjectMolecule.cpp:7579:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] 7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) | ^~ ~~~~~~~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:31: layer0/Feedback.h:274:15: note: 'snprintf' output between 34 and 289 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:7578:3: note: in expansion of macro 'PRINTFB' 7578 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-i386-3.11/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDot.cpp -o build/temp.linux-i386-3.11/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/SceneMouse.cpp: In function 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)': layer1/SceneMouse.cpp:455:32: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=] 455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G); | ^~ ~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from include/pymol/zstring_view.h:12, from layer1/SceneMouse.h:4, from layer1/SceneMouse.cpp:1: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)' at layer1/SceneMouse.cpp:454:11: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output 21 or more bytes (assuming 276) into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-i386-3.11/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-i386-3.11/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()': layer2/ObjectMolecule.cpp:10605:82: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] 10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:10604:13: note: in expansion of macro 'PRINTFB' 10604 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)': layer2/ObjectMolecule.cpp:10731:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~ layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:10731:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-i386-3.11/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)': layer2/ObjectMap.cpp:5982:24: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=] 5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G); | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/python3.11/Python.h:24, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void ObjectMapDump(const ObjectMap*, const char*, int, int)' at layer2/ObjectMap.cpp:5981:5: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output 30 or more bytes (assuming 285) into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/DistSet.cpp -o build/temp.linux-i386-3.11/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-i386-3.11/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-i386-3.11/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-i386-3.11/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-i386-3.11/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/View.cpp -o build/temp.linux-i386-3.11/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-i386-3.11/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-i386-3.11/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-i386-3.11/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2961:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2960:5, inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4803:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4835:28: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2970:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2969:5, inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4803:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4835:28: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2976:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2975:5, inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4803:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4835:28: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:3058:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:3057:5, inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4803:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4835:28: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-i386-3.11/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-i386-3.11/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Editor.cpp -o build/temp.linux-i386-3.11/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4289:3: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4289:3: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-i386-3.11/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-i386-3.11/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-i386-3.11/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Character.cpp -o build/temp.linux-i386-3.11/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-i386-3.11/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-i386-3.11/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-i386-3.11/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-i386-3.11/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-i386-3.11/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)': layer3/Editor.cpp:1933:29: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 1933 | " Editor: grabbing (%s).", name ENDFB(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer1/ButMode.h:20, from layer3/Editor.cpp:28: layer0/Feedback.h:274:15: note: 'snprintf' output between 22 and 277 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Editor.cpp:1932:7: note: in expansion of macro 'PRINTFB' 1932 | PRINTFB(G, FB_Editor, FB_Blather) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-i386-3.11/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': layer3/Editor.cpp:335:29: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] 335 | sprintf(buffer, "(byres %s)", name); | ^~ ~~~~ layer3/Editor.cpp:335:12: note: 'sprintf' output between 9 and 264 bytes into a destination of size 256 335 | sprintf(buffer, "(byres %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:337:31: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] 337 | sprintf(buffer, "(bychain %s)", name); | ^~ ~~~~ layer3/Editor.cpp:337:12: note: 'sprintf' output between 11 and 266 bytes into a destination of size 256 337 | sprintf(buffer, "(bychain %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:339:32: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] 339 | sprintf(buffer, "(byobject %s)", name); | ^~ ~~~~ layer3/Editor.cpp:339:12: note: 'sprintf' output between 12 and 267 bytes into a destination of size 256 339 | sprintf(buffer, "(byobject %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-i386-3.11/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-i386-3.11/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-i386-3.11/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Cmd.cpp -o build/temp.linux-i386-3.11/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-i386-3.11/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Executive.cpp -o build/temp.linux-i386-3.11/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()': layer2/ObjectMesh.cpp:502:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] 502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:501:9: note: in expansion of macro 'PRINTFB' 501 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors) | ^~~~~~~ layer2/ObjectMesh.cpp:535:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] 535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:534:13: note: in expansion of macro 'PRINTFB' 534 | PRINTFB(G, FB_ObjectMesh, FB_Details) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-i386-3.11/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)': layer2/ObjectMesh.cpp:329:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:328:7: note: in expansion of macro 'PRINTFB' 328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-i386-3.11/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-i386-3.11/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/PlugIOManager.cpp: In function 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)': layer3/PlugIOManager.cpp:946:65: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] 946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/python3.11/Python.h:24, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:20: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)' at layer3/PlugIOManager.cpp:945:7: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)': layer2/ObjectMolecule2.cpp:335:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/python3.11/Python.h:24, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:24: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)' at layer2/ObjectMolecule2.cpp:334:7: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 26 and 291 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-i386-3.11/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/VFont.cpp -o build/temp.linux-i386-3.11/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/main.cpp -o build/temp.linux-i386-3.11/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-i386-3.11/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Seeker.cpp -o build/temp.linux-i386-3.11/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-i386-3.11/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-i386-3.11/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-i386-3.11/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-i386-3.11/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-i386-3.11/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-i386-3.11/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-i386-3.11/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-i386-3.11/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-i386-3.11/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-i386-3.11/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-i386-3.11/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9007:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] 9007 | " Remove: eliminated %d atoms in model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9006:15: note: in expansion of macro 'PRINTFB' 9006 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': layer3/Executive.cpp:11424:28: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ 11425 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11423:15: note: in expansion of macro 'PRINTF' 11423 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)': layer3/Executive.cpp:11505:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~ 11506 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11504:13: note: in expansion of macro 'PRINTF' 11504 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': layer3/Executive.cpp:11605:62: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] 11605 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11604:17: note: in expansion of macro 'PRINTF' 11604 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:11684:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~ 11685 | name, nSet, rec->obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11683:13: note: in expansion of macro 'PRINTF' 11683 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)': layer3/Executive.cpp:12226:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12227 | name, value2, obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12225:17: note: in expansion of macro 'PRINTF' 12225 | PRINTF | ^~~~~~ layer3/Executive.cpp:12218:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12218 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12219 | name, value2, obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12217:17: note: in expansion of macro 'PRINTF' 12217 | PRINTF | ^~~~~~ layer3/Executive.cpp:12197:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12197:11: note: in expansion of macro 'PRINTF' 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Shaker.cpp -o build/temp.linux-i386-3.11/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12129:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12129 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ 12130 | name, op.i4, rec->obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12128:23: note: in expansion of macro 'PRINTF' 12128 | PRINTF | ^~~~~~ layer3/Executive.cpp:12097:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 12098 | name, value2, nObj, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12096:19: note: in expansion of macro 'PRINTF' 12096 | PRINTF | ^~~~~~ layer3/Executive.cpp:12094:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~ ~~~~ layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12093:19: note: in expansion of macro 'PRINTF' 12093 | PRINTF | ^~~~~~ layer3/Executive.cpp:12161:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12162 | name, value2, rec->obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12160:23: note: in expansion of macro 'PRINTF' 12160 | PRINTF | ^~~~~~ layer3/Executive.cpp:12153:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12153 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12154 | name, value2, rec->obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12152:23: note: in expansion of macro 'PRINTF' 12152 | PRINTF | ^~~~~~ layer3/Executive.cpp:12057:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12057:11: note: in expansion of macro 'PRINTF' 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Selector.cpp -o build/temp.linux-i386-3.11/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-i386-3.11/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOp.cpp -o build/temp.linux-i386-3.11/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()': layer2/ObjectSlice.cpp:639:42: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] 639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: 'snprintf' output between 51 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:638:9: note: in expansion of macro 'PRINTFB' 638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors) | ^~~~~~~ layer2/ObjectSlice.cpp:650:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] 650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:649:11: note: in expansion of macro 'PRINTFB' 649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather) | ^~~~~~~ layer1/SymOp.cpp: In member function 'std::string pymol::SymOp::to_string() const': layer1/SymOp.cpp:37:32: warning: '%d' directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~~~~~~~~~~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from layer1/SymOp.h:9, from layer1/SymOp.cpp:7: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'std::string pymol::SymOp::to_string() const' at layer1/SymOp.cpp:37:16: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 6 and 17 bytes into a destination of size 8 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-i386-3.11/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)': layer3/Executive.cpp:5951:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=] 5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5950:7: note: in expansion of macro 'PRINTFB' 5950 | PRINTFB(G, FB_Executive, FB_Details) | ^~~~~~~ layer3/Executive.cpp:5942:46: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=] 5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__, | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5941:7: note: in expansion of macro 'PRINTFB' 5941 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Menu.cpp -o build/temp.linux-i386-3.11/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)': layer3/Executive.cpp:9358:53: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] 9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9357:17: note: in expansion of macro 'PRINTFB' 9357 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9371:67: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] 9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9370:17: note: in expansion of macro 'PRINTFB' 9370 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9383:59: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] 9383 | " Unbond: %d bonds removed from model \"%s\".\n", | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9382:17: note: in expansion of macro 'PRINTFB' 9382 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/PopUp.cpp -o build/temp.linux-i386-3.11/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)': layer2/ObjectSurface.cpp:268:30: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:35: layer0/Feedback.h:274:15: note: 'snprintf' output 34 or more bytes (assuming 289) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:267:7: note: in expansion of macro 'PRINTFB' 267 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions) | ^~~~~~~ layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()': layer2/ObjectSurface.cpp:493:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:492:13: note: in expansion of macro 'PRINTFB' 492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-i386-3.11/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-i386-3.11/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)': layer3/Executive.cpp:12338:68: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] 12338 | " Setting: %s unset for %d atoms in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12337:21: note: in expansion of macro 'PRINTF' 12337 | PRINTF | ^~~~~~ layer3/Executive.cpp:12360:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~ layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12359:23: note: in expansion of macro 'PRINTF' 12359 | PRINTF | ^~~~~~ layer3/Executive.cpp:12354:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12354 | " Setting: %s unset in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12353:23: note: in expansion of macro 'PRINTF' 12353 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)': layer3/Executive.cpp:14447:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14446:7: note: in expansion of macro 'PRINTFB' 14446 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14442:36: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14441:7: note: in expansion of macro 'PRINTFB' 14441 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14473:11: warning: 'char* strcpy(char*, const char*)' writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 14473 | strcpy(rec->name, obj->Name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:9665:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9664:3: note: in expansion of macro 'PRINTFB' 9664 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)': layer3/Executive.cpp:15471:55: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ^~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~ layer3/Executive.cpp:15471:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)': layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF' 11876 | PRINTF | ^~~~~~ layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF' 11876 | PRINTF | ^~~~~~ layer3/Executive.cpp:11788:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 11789 | name, value, nObj, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11787:19: note: in expansion of macro 'PRINTF' 11787 | PRINTF | ^~~~~~ layer3/Executive.cpp:11785:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~ ~~~~~ layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11784:19: note: in expansion of macro 'PRINTF' 11784 | PRINTF | ^~~~~~ layer3/Executive.cpp:11909:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 11910 | name, value, rec->obj->Name, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11908:23: note: in expansion of macro 'PRINTF' 11908 | PRINTF | ^~~~~~ layer3/Executive.cpp:11902:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11902 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 11903 | name, value, rec->obj->Name ENDF(G); | ~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11901:23: note: in expansion of macro 'PRINTF' 11901 | PRINTF | ^~~~~~ layer3/Executive.cpp:11744:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~ ~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11744:11: note: in expansion of macro 'PRINTF' 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~~~~~ layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)': layer2/ObjectVolume.cpp:74:33: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/python3.11/Python.h:24, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)' at layer2/ObjectVolume.cpp:73:5: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': layer3/Selector.cpp:1722:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] 1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from layer3/Selector.cpp:20: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)' at layer3/Selector.cpp:1721:19: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 59 and 324 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)': layer3/Executive.cpp:2259:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:2258:17: note: in expansion of macro 'PRINTFB' 2258 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-i386-3.11/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'pymol::Result > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)': layer3/Executive.cpp:3523:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=] 3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n", | ^~ 3524 | name ENDFB(G); | ~~~~ layer0/Feedback.h:274:15: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:3522:5: note: in expansion of macro 'PRINTFB' 3522 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5070:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] 5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n", | ^~ In function 'int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)', inlined from 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)' at layer3/Executive.cpp:5696:38: layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5069:11: note: in expansion of macro 'PRINTFB' 5069 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5095:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] 5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); | ^~ In function 'int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)', inlined from 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)' at layer3/Executive.cpp:5696:38: layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5094:9: note: in expansion of macro 'PRINTFB' 5094 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-i386-3.11/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-i386-3.11/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-i386-3.11/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-i386-3.11/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-i386-3.11/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-i386-3.11/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp i686-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.11/build/generated/ShaderText.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i386-3.11/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i386-3.11/layer0/Block.o build/temp.linux-i386-3.11/layer0/CarveHelper.o build/temp.linux-i386-3.11/layer0/ContourSurf.o build/temp.linux-i386-3.11/layer0/Crystal.o build/temp.linux-i386-3.11/layer0/Deferred.o build/temp.linux-i386-3.11/layer0/Err.o build/temp.linux-i386-3.11/layer0/Feedback.o build/temp.linux-i386-3.11/layer0/Field.o build/temp.linux-i386-3.11/layer0/File.o build/temp.linux-i386-3.11/layer0/GenericBuffer.o build/temp.linux-i386-3.11/layer0/GraphicsUtil.o build/temp.linux-i386-3.11/layer0/Isosurf.o build/temp.linux-i386-3.11/layer0/Map.o build/temp.linux-i386-3.11/layer0/Match.o build/temp.linux-i386-3.11/layer0/Matrix.o build/temp.linux-i386-3.11/layer0/MemoryDebug.o build/temp.linux-i386-3.11/layer0/MemoryUsage.o build/temp.linux-i386-3.11/layer0/MyPNG.o build/temp.linux-i386-3.11/layer0/Parse.o build/temp.linux-i386-3.11/layer0/Pixmap.o build/temp.linux-i386-3.11/layer0/PostProcess.o build/temp.linux-i386-3.11/layer0/ShaderMgr.o build/temp.linux-i386-3.11/layer0/ShaderPrg.o build/temp.linux-i386-3.11/layer0/Sphere.o build/temp.linux-i386-3.11/layer0/Tetsurf.o build/temp.linux-i386-3.11/layer0/Texture.o build/temp.linux-i386-3.11/layer0/Tracker.o build/temp.linux-i386-3.11/layer0/Triangle.o build/temp.linux-i386-3.11/layer0/Util.o build/temp.linux-i386-3.11/layer0/Util2.o build/temp.linux-i386-3.11/layer0/Vector.o build/temp.linux-i386-3.11/layer0/Word.o build/temp.linux-i386-3.11/layer0/ccealignmodule.o build/temp.linux-i386-3.11/layer0/marching_cubes.o build/temp.linux-i386-3.11/layer0/os_gl.o build/temp.linux-i386-3.11/layer1/Basis.o build/temp.linux-i386-3.11/layer1/ButMode.o build/temp.linux-i386-3.11/layer1/CGO.o build/temp.linux-i386-3.11/layer1/COLLADA.o build/temp.linux-i386-3.11/layer1/Character.o build/temp.linux-i386-3.11/layer1/Color.o build/temp.linux-i386-3.11/layer1/Control.o build/temp.linux-i386-3.11/layer1/Extrude.o build/temp.linux-i386-3.11/layer1/Font.o build/temp.linux-i386-3.11/layer1/FontGLUT.o build/temp.linux-i386-3.11/layer1/FontGLUT8x13.o build/temp.linux-i386-3.11/layer1/FontGLUT9x15.o build/temp.linux-i386-3.11/layer1/FontGLUTHel10.o build/temp.linux-i386-3.11/layer1/FontGLUTHel12.o build/temp.linux-i386-3.11/layer1/FontGLUTHel18.o build/temp.linux-i386-3.11/layer1/FontType.o build/temp.linux-i386-3.11/layer1/Movie.o build/temp.linux-i386-3.11/layer1/Ortho.o build/temp.linux-i386-3.11/layer1/P.o build/temp.linux-i386-3.11/layer1/PConv.o build/temp.linux-i386-3.11/layer1/Picking.o build/temp.linux-i386-3.11/layer1/Pop.o build/temp.linux-i386-3.11/layer1/PyMOLObject.o build/temp.linux-i386-3.11/layer1/Ray.o build/temp.linux-i386-3.11/layer1/Rep.o build/temp.linux-i386-3.11/layer1/Scene.o build/temp.linux-i386-3.11/layer1/SceneMouse.o build/temp.linux-i386-3.11/layer1/ScenePicking.o build/temp.linux-i386-3.11/layer1/SceneRay.o build/temp.linux-i386-3.11/layer1/SceneRender.o build/temp.linux-i386-3.11/layer1/ScrollBar.o build/temp.linux-i386-3.11/layer1/Seq.o build/temp.linux-i386-3.11/layer1/Setting.o build/temp.linux-i386-3.11/layer1/Shaker.o build/temp.linux-i386-3.11/layer1/SymOp.o build/temp.linux-i386-3.11/layer1/SymOpPConv.o build/temp.linux-i386-3.11/layer1/SymOpTools.o build/temp.linux-i386-3.11/layer1/Symmetry.o build/temp.linux-i386-3.11/layer1/Text.o build/temp.linux-i386-3.11/layer1/TypeFace.o build/temp.linux-i386-3.11/layer1/View.o build/temp.linux-i386-3.11/layer1/Wizard.o build/temp.linux-i386-3.11/layer2/AssemblyHelpers.o build/temp.linux-i386-3.11/layer2/AtomInfo.o build/temp.linux-i386-3.11/layer2/AtomInfoHistory.o build/temp.linux-i386-3.11/layer2/BondTypeHistory.o build/temp.linux-i386-3.11/layer2/CifFile.o build/temp.linux-i386-3.11/layer2/CifMoleculeReader.o build/temp.linux-i386-3.11/layer2/CoordSet.o build/temp.linux-i386-3.11/layer2/DistSet.o build/temp.linux-i386-3.11/layer2/GadgetSet.o build/temp.linux-i386-3.11/layer2/HydrogenAdder.o build/temp.linux-i386-3.11/layer2/MmodTyping.o build/temp.linux-i386-3.11/layer2/MmtfMoleculeReader.o build/temp.linux-i386-3.11/layer2/Mol2Typing.o build/temp.linux-i386-3.11/layer2/MolV3000.o build/temp.linux-i386-3.11/layer2/ObjectAlignment.o build/temp.linux-i386-3.11/layer2/ObjectCGO.o build/temp.linux-i386-3.11/layer2/ObjectCallback.o build/temp.linux-i386-3.11/layer2/ObjectDist.o build/temp.linux-i386-3.11/layer2/ObjectGadget.o build/temp.linux-i386-3.11/layer2/ObjectGadgetRamp.o build/temp.linux-i386-3.11/layer2/ObjectGroup.o build/temp.linux-i386-3.11/layer2/ObjectMap.o build/temp.linux-i386-3.11/layer2/ObjectMesh.o build/temp.linux-i386-3.11/layer2/ObjectMolecule.o build/temp.linux-i386-3.11/layer2/ObjectMolecule2.o build/temp.linux-i386-3.11/layer2/ObjectMolecule3.o build/temp.linux-i386-3.11/layer2/ObjectSlice.o build/temp.linux-i386-3.11/layer2/ObjectSurface.o build/temp.linux-i386-3.11/layer2/ObjectVolume.o build/temp.linux-i386-3.11/layer2/RepAngle.o build/temp.linux-i386-3.11/layer2/RepCartoon.o build/temp.linux-i386-3.11/layer2/RepCylBond.o build/temp.linux-i386-3.11/layer2/RepDihedral.o build/temp.linux-i386-3.11/layer2/RepDistDash.o build/temp.linux-i386-3.11/layer2/RepDistLabel.o build/temp.linux-i386-3.11/layer2/RepDot.o build/temp.linux-i386-3.11/layer2/RepEllipsoid.o build/temp.linux-i386-3.11/layer2/RepLabel.o build/temp.linux-i386-3.11/layer2/RepMesh.o build/temp.linux-i386-3.11/layer2/RepNonbonded.o build/temp.linux-i386-3.11/layer2/RepNonbondedSphere.o build/temp.linux-i386-3.11/layer2/RepRibbon.o build/temp.linux-i386-3.11/layer2/RepSphere.o build/temp.linux-i386-3.11/layer2/RepSphereGenerate.o build/temp.linux-i386-3.11/layer2/RepSphereImmediate.o build/temp.linux-i386-3.11/layer2/RepSurface.o build/temp.linux-i386-3.11/layer2/RepWireBond.o build/temp.linux-i386-3.11/layer2/Sculpt.o build/temp.linux-i386-3.11/layer2/SculptCache.o build/temp.linux-i386-3.11/layer2/SideChainHelper.o build/temp.linux-i386-3.11/layer2/VFont.o build/temp.linux-i386-3.11/layer3/AtomIterators.o build/temp.linux-i386-3.11/layer3/CifDataValueFormatter.o build/temp.linux-i386-3.11/layer3/Editor.o build/temp.linux-i386-3.11/layer3/Executive.o build/temp.linux-i386-3.11/layer3/ExecutivePython.o build/temp.linux-i386-3.11/layer3/MaeExportHelpers.o build/temp.linux-i386-3.11/layer3/MoleculeExporter.o build/temp.linux-i386-3.11/layer3/MovieScene.o build/temp.linux-i386-3.11/layer3/PlugIOManager.o build/temp.linux-i386-3.11/layer3/RingFinder.o build/temp.linux-i386-3.11/layer3/Seeker.o build/temp.linux-i386-3.11/layer3/Selector.o build/temp.linux-i386-3.11/layer3/SelectorTmp.o build/temp.linux-i386-3.11/layer3/SpecRec.o build/temp.linux-i386-3.11/layer3/SpecRecSpecial.o build/temp.linux-i386-3.11/layer4/Cmd.o build/temp.linux-i386-3.11/layer4/Menu.o build/temp.linux-i386-3.11/layer4/PopUp.o build/temp.linux-i386-3.11/layer5/PyMOL.o build/temp.linux-i386-3.11/layer5/TestPyMOL.o build/temp.linux-i386-3.11/layer5/main.o build/temp.linux-i386-3.11/ov/src/OVContext.o build/temp.linux-i386-3.11/ov/src/OVHeap.o build/temp.linux-i386-3.11/ov/src/OVHeapArray.o build/temp.linux-i386-3.11/ov/src/OVLexicon.o build/temp.linux-i386-3.11/ov/src/OVOneToAny.o build/temp.linux-i386-3.11/ov/src/OVOneToOne.o build/temp.linux-i386-3.11/ov/src/OVRandom.o build/temp.linux-i386-3.11/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/_cmd.cpython-311-i386-linux-gnu.so -fopenmp building 'chempy.champ._champ' extension creating build/temp.linux-i386-3.11/contrib/champ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ.c -o build/temp.linux-i386-3.11/contrib/champ/champ.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-i386-3.11/contrib/champ/champ_module.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/err2.c -o build/temp.linux-i386-3.11/contrib/champ/err2.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/chiral.c -o build/temp.linux-i386-3.11/contrib/champ/chiral.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-i386-3.11/contrib/champ/os_memory.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/sort.c -o build/temp.linux-i386-3.11/contrib/champ/sort.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/vla.c -o build/temp.linux-i386-3.11/contrib/champ/vla.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-i386-3.11/contrib/champ/feedback2.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/list.c -o build/temp.linux-i386-3.11/contrib/champ/list.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/strblock.c -o build/temp.linux-i386-3.11/contrib/champ/strblock.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.11/contrib/champ/champ.o build/temp.linux-i386-3.11/contrib/champ/champ_module.o build/temp.linux-i386-3.11/contrib/champ/chiral.o build/temp.linux-i386-3.11/contrib/champ/err2.o build/temp.linux-i386-3.11/contrib/champ/feedback2.o build/temp.linux-i386-3.11/contrib/champ/list.o build/temp.linux-i386-3.11/contrib/champ/os_memory.o build/temp.linux-i386-3.11/contrib/champ/sort.o build/temp.linux-i386-3.11/contrib/champ/strblock.o build/temp.linux-i386-3.11/contrib/champ/vla.o -o /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/_champ.cpython-311-i386-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' echo "FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'" FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol' echo "Unfortunately upstream has removed the script that was used for testing from upstream source" Unfortunately upstream has removed the script that was used for testing from upstream source make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol /build/reproducible-path/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running install running build running build_py running build_ext running install_lib creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11 creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/io.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/state.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/realtime.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/keyword.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/place.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein_residues.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/cpv.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/sdf.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bond_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/xyz.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/gms.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mol2.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fast copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fast/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fast copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/brick.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mol.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/pdb.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein_mmff.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fragments copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fragments/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fragments copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bond_mmff.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/pkl.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/models.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/hetatm.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/neighbor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/cc1.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/cif.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/gamess1.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/water_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mass.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/state.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/realtime.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/commands.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/util.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/lst.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein_amber99.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/charge.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf/io.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mae.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/assign.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/amber99.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/_champ.cpython-311-i386-linux-gnu.so -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/formal_charges.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/map.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/water_residues.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/arc.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/solvate.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bonds.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/dictdb.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/SetEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/volume.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/Demo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/demo copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/demo copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal/builder.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/TextEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/Setting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/PMGApp.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/ColorEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/startup copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/startup/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/startup creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/morphing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/selecting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/seqalign.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/invocation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/setting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/shortcut.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/fitting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/cmd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/mpeg_encode.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizarding.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/parsing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/repository.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/managergui_qt.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/legacysupport.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/installation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/managergui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/menu.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/computing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/parser.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/xray.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/stereochemistry copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/stereochemistry/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/stereochemistry copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/cgo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt/utils.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/commanding.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/shortcut_dict.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/editing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/callback.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/xwin.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/controlling.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/feedingback.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/editor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/_cmd.cpython-311-i386-linux-gnu.so -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/save_shortcut.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/completing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/keywords.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/querying.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/movie.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/headering.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/exporting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/helping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/__main__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/colorprinting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/keyboard.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/rpc.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/diagnosing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/monitoring.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/constants.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/selector.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/lazyio.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/api.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/internal.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/vfont.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/checking.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/shortcut_manager.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/colorramping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/creating.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/preset.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/openvr.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/benchmark.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/cleanup.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/dragging.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/density.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/pair_fit.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/command.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/label.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/appearance.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/message.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/distance.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/stereodemo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/annotation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/toggle.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/security.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/demo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/filter.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/charge.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/sculpting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/renaming.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/pseudoatom.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/box.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/measurement.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/mutagenesis.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/experimenting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/viewing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/util.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/constants_palette.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/moving.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/locking.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/pymolhttpd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/importing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/povray.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/externing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/shortcut_menu_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/keymapping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/volume.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/properties_dialog.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/builder.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/TextEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/mimic_tk.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax/python.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax/pml.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/file_dialogs.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/render.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/save_object.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/shortcut_menu.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/create_shortcut.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/help_shortcut.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_traj.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/fetch.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_aln.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/movieexport.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/colors.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/change_confirm.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/askpartial.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/png.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_map.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/props.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_mae.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2 copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2/cmd2.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2 copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2 byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/io.py to io.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/state.py to state.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/amber.py to amber.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/realtime.py to realtime.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/keyword.py to keyword.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/place.py to place.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein_residues.py to protein_residues.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/cpv.py to cpv.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/sdf.py to sdf.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein_amber.py to protein_amber.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bond_amber.py to bond_amber.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/xyz.py to xyz.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmd.py to mmd.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/gms.py to gms.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mol2.py to mol2.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fast/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/brick.py to brick.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mol.py to mol.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/pdb.py to pdb.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein.py to protein.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fragments/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/pkl.py to pkl.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/models.py to models.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/hetatm.py to hetatm.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/neighbor.py to neighbor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/cc1.py to cc1.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/cif.py to cif.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/gamess1.py to gamess1.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/water_amber.py to water_amber.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mass.py to mass.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/state.py to state.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/realtime.py to realtime.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/commands.py to commands.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/util.py to util.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/lst.py to lst.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/charge.py to charge.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf/io.py to io.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mae.py to mae.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ/assign.py to assign.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ/amber99.py to amber99.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/map.py to map.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/water_residues.py to water_residues.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/arc.py to arc.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/solvate.py to solvate.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bonds.py to bonds.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/dictdb.py to dictdb.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/volume.py to volume.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/Demo.py to Demo.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/Setting.py to Setting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/morphing.py to morphing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/selecting.py to selecting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/seqalign.py to seqalign.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/invocation.py to invocation.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/setting.py to setting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/shortcut.py to shortcut.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/fitting.py to fitting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/cmd.py to cmd.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizarding.py to wizarding.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/parsing.py to parsing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/repository.py to repository.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/installation.py to installation.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/managergui.py to managergui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/menu.py to menu.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/computing.py to computing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/parser.py to parser.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/xray.py to xray.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/cgo.py to cgo.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/commanding.py to commanding.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/editing.py to editing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/callback.py to callback.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/xwin.py to xwin.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/controlling.py to controlling.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/feedingback.py to feedingback.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/editor.py to editor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/save_shortcut.py to save_shortcut.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/completing.py to completing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/keywords.py to keywords.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/querying.py to querying.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/movie.py to movie.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/headering.py to headering.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/exporting.py to exporting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/helping.py to helping.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/gui.py to gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/colorprinting.py to colorprinting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/keyboard.py to keyboard.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/rpc.py to rpc.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/diagnosing.py to diagnosing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/monitoring.py to monitoring.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/_gui.py to _gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/constants.py to constants.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/selector.py to selector.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/lazyio.py to lazyio.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/api.py to api.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/internal.py to internal.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/vfont.py to vfont.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/checking.py to checking.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/colorramping.py to colorramping.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/creating.py to creating.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/preset.py to preset.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/openvr.py to openvr.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/dragging.py to dragging.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/density.py to density.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/command.py to command.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/label.py to label.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/appearance.py to appearance.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/message.py to message.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/distance.py to distance.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/annotation.py to annotation.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/toggle.py to toggle.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/security.py to security.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/demo.py to demo.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/filter.py to filter.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/charge.py to charge.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/renaming.py to renaming.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/box.py to box.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/measurement.py to measurement.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/experimenting.py to experimenting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/viewing.py to viewing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/util.py to util.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/constants_palette.py to constants_palette.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/moving.py to moving.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/locking.py to locking.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/importing.py to importing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/povray.py to povray.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/externing.py to externing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/volume.py to volume.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/builder.py to builder.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax/python.py to python.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2/cmd2.py to cmd2.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2/__init__.py to __init__.cpython-311.pyc running install_egg_info Writing /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol-2.5.0.egg-info creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/bin debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' dh_numpy3 dh_install rm -rf debian/python*pymol/usr/bin make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./debian/pymolRef.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file pymol-ref-card.aux. Underfull \hbox (badness 10000) in paragraph at lines 78--79 [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (debian/pymol-ref-card.aux) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm0900 mkdir: cannot create directory '././nonexistent': Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm0900 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm0900.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06744pt) Font metrics written on tcrm0900.tfm. Output written on tcrm0900.600gf (128 characters, 21392 bytes). Transcript written on tcrm0900.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm0900.600pk: successfully generated. ) (see the transcript file for additional information) Output written on debian/pymol-ref-card.pdf (2 pages, 108210 bytes). Transcript written on debian/pymol-ref-card.log. dh_install install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_installmime -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' dh_compress -Xpdb make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pymol/usr/lib/python3/dist-packages/pymol/_cmd.cpython-311-i386-linux-gnu.so: DWARF compression not beneficial - old size 26760568 new size 26903525 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pymol' in '../pymol_2.5.0+dfsg-1_all.deb'. dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.5.0+dfsg-1_i386.deb'. dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.5.0+dfsg-1_i386.deb'. dpkg-deb: building package 'pymol-data' in '../pymol-data_2.5.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../pymol_2.5.0+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../pymol_2.5.0+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/23934/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/23934/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23934 and its subdirectories I: Current time: Sat Jan 20 08:48:15 +14 2024 I: pbuilder-time-stamp: 1705690095