I: pbuilder: network access will be disabled during build
I: Current time: Thu Jun 6 01:56:03 -12 2024
I: pbuilder-time-stamp: 1717682163
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [python-pauvre_0.2.3-2.dsc]
I: copying [./python-pauvre_0.2.3.orig.tar.gz]
I: copying [./python-pauvre_0.2.3-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Dec 18 03:43:44 2022 -12
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-2.dsc: no acceptable signature found
dpkg-source: info: extracting python-pauvre in python-pauvre-0.2.3
dpkg-source: info: unpacking python-pauvre_0.2.3.orig.tar.gz
dpkg-source: info: unpacking python-pauvre_0.2.3-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying lsi-test-args.patch
dpkg-source: info: applying biopython-1.80.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/107605/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='3b226737862c4aa194c770b8dd1766b6'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='107605'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KRn71xM8/pbuilderrc_4SCt --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KRn71xM8/b1 --logfile b1/build.log python-pauvre_0.2.3-2.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos6-i386 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux
I: ls -l /bin
total 6036
-rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 20 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 20 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 5 2023 dash
-rwxr-xr-x 1 root root 137160 Sep 20 2022 date
-rwxr-xr-x 1 root root 100364 Sep 20 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 20 2022 df
-rwxr-xr-x 1 root root 162152 Sep 20 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 34664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 218680 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 75756 Sep 20 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 22 2023 login
-rwxr-xr-x 1 root root 162152 Sep 20 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 22 2023 more
-rwsr-xr-x 1 root root 58912 Mar 22 2023 mount
-rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 20 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 133224 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 20 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 22 2023 su
-rwxr-xr-x 1 root root 38792 Sep 20 2022 sync
-rwxr-xr-x 1 root root 598456 Apr 6 2023 tar
-rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 120776 Sep 20 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 20 2022 true
-rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 22 2023 umount
-rwxr-xr-x 1 root root 38760 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/107605/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib, python3-biopython, python3-pandas, python3-numpy, python3-scipy, python3-sklearn, python3-tk, python3-progressbar
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
Package python3-matplotlib is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-pandas; however:
Package python3-pandas is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-scipy; however:
Package python3-scipy is not installed.
pbuilder-satisfydepends-dummy depends on python3-sklearn; however:
Package python3-sklearn is not installed.
pbuilder-satisfydepends-dummy depends on python3-tk; however:
Package python3-tk is not installed.
pbuilder-satisfydepends-dummy depends on python3-progressbar; however:
Package python3-progressbar is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-biopython{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-joblib{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-ply{a} python3-progressbar{a} python3-pyparsing{a} python3-pythran{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sklearn{a} python3-sklearn-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-nose python3-numexpr python3-odf python3-olefile python3-openpyxl python3-psutil python3-pytest python3-simplejson python3-tables shared-mime-info wget xdg-user-dirs
0 packages upgraded, 162 newly installed, 0 to remove and 0 not upgraded.
Need to get 144 MB of archives. After unpacking 711 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B]
Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 sgml-base all 1.31 [15.4 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libtcl8.6 i386 8.6.13+dfsg-2 [1095 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 libfontenc1 i386 1:1.1.4-1 [24.5 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 fonts-urw-base35 all 20200910-7 [10.8 MB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 libxft2 i386 2.3.6-1 [62.8 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 libtk8.6 i386 8.6.13-2 [824 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-4.1 [622 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 blt i386 2.5.3+dfsg-4.1 [14.9 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 62 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 64 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB]
Get: 66 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 67 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 68 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 70 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 71 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-2 [131 kB]
Get: 72 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 fonts-lyx all 2.3.7-1 [186 kB]
Get: 74 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B]
Get: 77 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 78 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB]
Get: 80 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB]
Get: 82 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 83 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB]
Get: 84 http://deb.debian.org/debian bookworm/main i386 libimagequant0 i386 2.17.0-1 [32.9 kB]
Get: 85 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB]
Get: 86 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB]
Get: 87 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 88 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 89 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 90 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB]
Get: 91 http://deb.debian.org/debian bookworm/main i386 libopenblas0-pthread i386 0.3.21+ds-4 [5148 kB]
Get: 92 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB]
Get: 93 http://deb.debian.org/debian bookworm/main i386 liblbfgsb0 i386 3.0+dfsg.4-1 [28.5 kB]
Get: 94 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB]
Get: 95 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB]
Get: 96 http://deb.debian.org/debian bookworm/main i386 libopenblas0 i386 0.3.21+ds-4 [32.6 kB]
Get: 97 http://deb.debian.org/debian bookworm/main i386 libopenblas-pthread-dev i386 0.3.21+ds-4 [3447 kB]
Get: 98 http://deb.debian.org/debian bookworm/main i386 libopenblas-dev i386 0.3.21+ds-4 [44.9 kB]
Get: 99 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-1+b1 [196 kB]
Get: 100 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB]
Get: 101 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB]
Get: 102 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB]
Get: 103 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B]
Get: 104 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B]
Get: 105 http://deb.debian.org/debian bookworm/main i386 libqhull-r8.0 i386 2020.2-5 [260 kB]
Get: 106 http://deb.debian.org/debian bookworm/main i386 libraqm0 i386 0.7.0-4.1 [11.1 kB]
Get: 107 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB]
Get: 108 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB]
Get: 109 http://deb.debian.org/debian bookworm/main i386 libwebpdemux2 i386 1.2.4-0.1 [99.7 kB]
Get: 110 http://deb.debian.org/debian bookworm/main i386 libwebpmux3 i386 1.2.4-0.1 [111 kB]
Get: 111 http://deb.debian.org/debian bookworm/main i386 libxsimd-dev i386 8.1.0-7 [88.8 kB]
Get: 112 http://deb.debian.org/debian bookworm/main i386 libxslt1.1 i386 1.1.35-1 [253 kB]
Get: 113 http://deb.debian.org/debian bookworm/main i386 python-matplotlib-data all 3.6.3-1 [2744 kB]
Get: 114 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B]
Get: 115 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB]
Get: 116 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB]
Get: 117 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B]
Get: 118 http://deb.debian.org/debian bookworm/main i386 python3-appdirs all 1.4.4-3 [13.0 kB]
Get: 119 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB]
Get: 120 http://deb.debian.org/debian bookworm/main i386 python3-gast all 0.5.2-2 [9364 B]
Get: 121 http://deb.debian.org/debian bookworm/main i386 python3-beniget all 0.4.1-3 [9920 B]
Get: 122 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 123 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB]
Get: 124 http://deb.debian.org/debian bookworm/main i386 python3-renderpm i386 3.6.12-1+b1 [81.4 kB]
Get: 125 http://deb.debian.org/debian bookworm/main i386 python3-reportlab-accel i386 3.6.12-1+b1 [39.4 kB]
Get: 126 http://deb.debian.org/debian bookworm/main i386 python3-tk i386 3.11.2-2 [99.1 kB]
Get: 127 http://deb.debian.org/debian bookworm/main i386 python3-pil.imagetk i386 9.4.0-1.1+b1 [74.7 kB]
Get: 128 http://deb.debian.org/debian bookworm/main i386 python3-pil i386 9.4.0-1.1+b1 [473 kB]
Get: 129 http://deb.debian.org/debian bookworm/main i386 python3-reportlab all 3.6.12-1 [564 kB]
Get: 130 http://deb.debian.org/debian bookworm/main i386 xml-core all 0.18+nmu1 [23.8 kB]
Get: 131 http://deb.debian.org/debian bookworm/main i386 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 132 http://deb.debian.org/debian bookworm/main i386 python3-biopython i386 1.80+dfsg-4+b1 [1589 kB]
Get: 133 http://deb.debian.org/debian bookworm/main i386 python3-brotli i386 1.0.9-2+b6 [295 kB]
Get: 134 http://deb.debian.org/debian bookworm/main i386 python3-contourpy i386 1.0.7-1+b1 [184 kB]
Get: 135 http://deb.debian.org/debian bookworm/main i386 python3-cycler all 0.11.0-1 [8020 B]
Get: 136 http://deb.debian.org/debian bookworm/main i386 python3-six all 1.16.0-4 [17.5 kB]
Get: 137 http://deb.debian.org/debian bookworm/main i386 python3-dateutil all 2.8.2-2 [78.3 kB]
Get: 138 http://deb.debian.org/debian bookworm/main i386 python3-decorator all 5.1.1-3 [14.9 kB]
Get: 139 http://deb.debian.org/debian bookworm/main i386 python3-ply all 3.11-5 [65.8 kB]
Get: 140 http://deb.debian.org/debian bookworm/main i386 python3-pythran i386 0.11.0+ds-7 [427 kB]
Get: 141 http://deb.debian.org/debian bookworm/main i386 python3-scipy i386 1.10.1-2 [15.2 MB]
Get: 142 http://deb.debian.org/debian bookworm/main i386 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB]
Get: 143 http://deb.debian.org/debian bookworm/main i386 python3-mpmath all 1.2.1-2 [418 kB]
Get: 144 http://deb.debian.org/debian bookworm/main i386 python3-sympy all 1.11.1-1 [4358 kB]
Get: 145 http://deb.debian.org/debian bookworm/main i386 python3-tz all 2022.7.1-3 [30.1 kB]
Get: 146 http://deb.debian.org/debian bookworm/main i386 python3-fs all 2.4.16-2 [95.2 kB]
Get: 147 http://deb.debian.org/debian bookworm/main i386 python3-lxml i386 4.9.2-1+b1 [1182 kB]
Get: 148 http://deb.debian.org/debian bookworm/main i386 python3-lz4 i386 4.0.2+dfsg-1+b2 [25.1 kB]
Get: 149 http://deb.debian.org/debian bookworm/main i386 unicode-data all 15.0.0-1 [7984 kB]
Get: 150 http://deb.debian.org/debian bookworm/main i386 python3-fonttools i386 4.38.0-1+b1 [1010 kB]
Get: 151 http://deb.debian.org/debian bookworm/main i386 python3-joblib all 1.2.0-4 [211 kB]
Get: 152 http://deb.debian.org/debian bookworm/main i386 python3-kiwisolver i386 1.4.4-1+b1 [63.0 kB]
Get: 153 http://deb.debian.org/debian bookworm/main i386 python3-pyparsing all 3.0.9-1 [138 kB]
Get: 154 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB]
Get: 155 http://deb.debian.org/debian bookworm/main i386 python3-matplotlib i386 3.6.3-1+b1 [6891 kB]
Get: 156 http://deb.debian.org/debian bookworm/main i386 python3-pandas-lib i386 1.5.3+dfsg-2 [3382 kB]
Get: 157 http://deb.debian.org/debian bookworm/main i386 python3-pandas all 1.5.3+dfsg-2 [2885 kB]
Get: 158 http://deb.debian.org/debian bookworm/main i386 python3-progressbar all 2.5-3 [11.6 kB]
Get: 159 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB]
Get: 160 http://deb.debian.org/debian bookworm/main i386 python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get: 161 http://deb.debian.org/debian bookworm/main i386 python3-sklearn-lib i386 1.2.1+dfsg-1 [2395 kB]
Get: 162 http://deb.debian.org/debian bookworm/main i386 python3-sklearn all 1.2.1+dfsg-1 [2103 kB]
Fetched 144 MB in 2s (80.4 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:i386.
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Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ...
Unpacking libpython3.11-minimal:i386 (3.11.2-6) ...
Selecting previously unselected package libexpat1:i386.
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Unpacking libexpat1:i386 (2.5.0-1) ...
Selecting previously unselected package python3.11-minimal.
Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ...
Unpacking python3.11-minimal (3.11.2-6) ...
Setting up libpython3.11-minimal:i386 (3.11.2-6) ...
Setting up libexpat1:i386 (2.5.0-1) ...
Setting up python3.11-minimal (3.11.2-6) ...
Selecting previously unselected package python3-minimal.
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Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ...
Unpacking python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.0.0_all.deb ...
Unpacking media-types (10.0.0) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package libreadline8:i386.
Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ...
Unpacking libreadline8:i386 (8.2-1.3) ...
Selecting previously unselected package libpython3.11-stdlib:i386.
Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ...
Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ...
Selecting previously unselected package python3.11.
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Unpacking python3.11 (3.11.2-6) ...
Selecting previously unselected package libpython3-stdlib:i386.
Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ...
Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ...
Setting up python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package python3.
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Preparing to unpack .../000-python3_3.11.2-1+b1_i386.deb ...
Unpacking python3 (3.11.2-1+b1) ...
Selecting previously unselected package sgml-base.
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Unpacking sgml-base (1.31) ...
Selecting previously unselected package libproc2-0:i386.
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Unpacking libproc2-0:i386 (2:4.0.2-3) ...
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Unpacking procps (2:4.0.2-3) ...
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Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_i386.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:i386.
Preparing to unpack .../006-libmagic1_1%3a5.44-3_i386.deb ...
Unpacking libmagic1:i386 (1:5.44-3) ...
Selecting previously unselected package file.
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Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../008-gettext-base_0.21-12_i386.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../009-libuchardet0_0.0.7-1_i386.deb ...
Unpacking libuchardet0:i386 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../010-groff-base_1.22.4-10_i386.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
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Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:i386.
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Unpacking libpipeline1:i386 (1.5.7-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.11.2-2) ...
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Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
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Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
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Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../018-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libtcl8.6:i386.
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Unpacking libtcl8.6:i386 (8.6.13+dfsg-2) ...
Selecting previously unselected package libbrotli1:i386.
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Unpacking libbrotli1:i386 (1.0.9-2+b6) ...
Selecting previously unselected package libpng16-16:i386.
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Unpacking libpng16-16:i386 (1.6.39-2) ...
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Unpacking libfreetype6:i386 (2.12.1+dfsg-5) ...
Selecting previously unselected package fonts-dejavu-core.
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Unpacking fonts-dejavu-core (2.37-6) ...
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Unpacking libfontenc1:i386 (1:1.1.4-1) ...
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Unpacking x11-common (1:7.7+23) ...
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Unpacking xfonts-encodings (1:1.0.4-2.2) ...
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Unpacking fontconfig-config (2.14.1-4) ...
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Unpacking libfontconfig1:i386 (2.14.1-4) ...
Selecting previously unselected package libxau6:i386.
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Unpacking libxau6:i386 (1:1.0.9-1) ...
Selecting previously unselected package libbsd0:i386.
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Unpacking libbsd0:i386 (0.11.7-2) ...
Selecting previously unselected package libxdmcp6:i386.
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Unpacking libxdmcp6:i386 (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:i386.
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Unpacking libxcb1:i386 (1.15-1) ...
Selecting previously unselected package libx11-data.
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Unpacking libx11-data (2:1.8.4-2) ...
Selecting previously unselected package libx11-6:i386.
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Unpacking libx11-6:i386 (2:1.8.4-2) ...
Selecting previously unselected package libxrender1:i386.
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Unpacking libxrender1:i386 (1:0.9.10-1.1) ...
Selecting previously unselected package libxft2:i386.
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Unpacking libxft2:i386 (2.3.6-1) ...
Selecting previously unselected package libxext6:i386.
Preparing to unpack .../039-libxext6_2%3a1.3.4-1+b1_i386.deb ...
Unpacking libxext6:i386 (2:1.3.4-1+b1) ...
Selecting previously unselected package libxss1:i386.
Preparing to unpack .../040-libxss1_1%3a1.2.3-1_i386.deb ...
Unpacking libxss1:i386 (1:1.2.3-1) ...
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invoke-rc.d: could not determine current runlevel
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Setting up unicode-data (15.0.0-1) ...
Setting up libxsimd-dev:i386 (8.1.0-7) ...
Setting up libfontenc1:i386 (1:1.1.4-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:i386 (3.11.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
Setting up libexpat1-dev:i386 (2.5.0-1) ...
Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ...
Setting up libx11-data (2:1.8.4-2) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:i386 (1.0.8-2.1) ...
Setting up libimagequant0:i386 (2.17.0-1) ...
Setting up libproc2-0:i386 (2:4.0.2-3) ...
Setting up libpng16-16:i386 (1.6.39-2) ...
Setting up libtcl8.6:i386 (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-12) ...
Setting up fonts-dejavu-core (2.37-6) ...
Setting up libgfortran5:i386 (12.2.0-14) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:i386 (1.2.4-0.1) ...
Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libtiff6:i386 (4.5.0-5) ...
Setting up libuchardet0:i386 (0.0.7-1) ...
Setting up procps (2:4.0.2-3) ...
Setting up libopenjp2-7:i386 (2.5.0-1+b1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up sgml-base (1.31) ...
Setting up libboost-dev:i386 (1.74.0.3) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up python-matplotlib-data (3.6.3-1) ...
Setting up libwebpmux3:i386 (1.2.4-0.1) ...
Setting up libbsd0:i386 (0.11.7-2) ...
Setting up libelf1:i386 (0.188-2.1) ...
Setting up readline-common (8.2-1.3) ...
Setting up libxml2:i386 (2.9.14+dfsg-1.2) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libxdmcp6:i386 (1:1.1.2-3) ...
Setting up liblapack3:i386 (3.11.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up libxcb1:i386 (1.15-1) ...
Setting up gettext (0.21-12) ...
Setting up libopenblas0-pthread:i386 (0.3.21+ds-4) ...
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/i386-linux-gnu/libopenblas.so.0 (libopenblas.so.0-i386-linux-gnu) in auto mode
Setting up libtool (2.4.7-5) ...
Setting up fontconfig-config (2.14.1-4) ...
Setting up libwebpdemux2:i386 (1.2.4-0.1) ...
Setting up libreadline8:i386 (8.2-1.3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up libfreetype6:i386 (2.12.1+dfsg-5) ...
Setting up libjs-sphinxdoc (5.3.0-4) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up libopenblas0:i386 (0.3.21+ds-4) ...
Setting up groff-base (1.22.4-10) ...
Setting up xml-core (0.18+nmu1) ...
Setting up libxslt1.1:i386 (1.1.35-1) ...
Setting up libx11-6:i386 (2:1.8.4-2) ...
Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ...
Setting up libfontconfig1:i386 (2.14.1-4) ...
Setting up liblbfgsb0:i386 (3.0+dfsg.4-1) ...
Setting up libopenblas-pthread-dev:i386 (0.3.21+ds-4) ...
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/i386-linux-gnu/libopenblas.so (libopenblas.so-i386-linux-gnu) in auto mode
Setting up libxrender1:i386 (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.11-stdlib:i386 (3.11.2-6) ...
Setting up libxext6:i386 (2:1.3.4-1+b1) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libopenblas-dev:i386 (0.3.21+ds-4) ...
Setting up libraqm0:i386 (0.7.0-4.1) ...
Setting up libxss1:i386 (1:1.2.3-1) ...
Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ...
Setting up python3.11 (3.11.2-6) ...
Setting up libxft2:i386 (2.3.6-1) ...
Setting up libpython3.11:i386 (3.11.2-6) ...
Setting up libtk8.6:i386 (8.6.13-2) ...
Setting up debhelper (13.11.4) ...
Setting up python3 (3.11.2-1+b1) ...
Setting up fonts-urw-base35 (20200910-7) ...
Setting up python3-tz (2022.7.1-3) ...
Setting up python3-six (1.16.0-4) ...
Setting up python3-progressbar (2.5-3) ...
Setting up python3-decorator (5.1.1-3) ...
Setting up python3-packaging (23.0-1) ...
Setting up python3-pyparsing (3.0.9-1) ...
Setting up libpython3.11-dev:i386 (3.11.2-6) ...
Setting up python3-brotli (1.0.9-2+b6) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-reportlab-accel:i386 (3.6.12-1+b1) ...
Setting up python3-kiwisolver (1.4.4-1+b1) ...
Setting up python3-lxml:i386 (4.9.2-1+b1) ...
Setting up python3-dateutil (2.8.2-2) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-lib2to3 (3.11.2-2) ...
Setting up python3-appdirs (1.4.4-3) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-2) ...
Setting up dh-python (5.20230130) ...
Setting up python3-sympy (1.11.1-1) ...
Setting up python3-attr (22.2.0-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up libpython3-dev:i386 (3.11.2-1+b1) ...
Setting up python3-renderpm:i386 (3.6.12-1+b1) ...
Setting up python3-setuptools (66.1.1-1) ...
Setting up python3-joblib (1.2.0-4) ...
Setting up python3-lz4 (4.0.2+dfsg-1+b2) ...
Setting up python3.11-dev (3.11.2-6) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-ply (3.11-5) ...
Setting up python3-threadpoolctl (3.1.0-1) ...
Setting up python3-gast (0.5.2-2) ...
Setting up python3-all (3.11.2-1+b1) ...
Setting up python3-tk:i386 (3.11.2-2) ...
Setting up python3-fs (2.4.16-2) ...
Setting up python3-beniget (0.4.1-3) ...
Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ...
Setting up python3-dev (3.11.2-1+b1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-contourpy (1.0.7-1+b1) ...
Setting up python3-all-dev (3.11.2-1+b1) ...
Setting up python3-pandas-lib:i386 (1.5.3+dfsg-2) ...
Setting up python3-sklearn-lib:i386 (1.2.1+dfsg-1) ...
Setting up python3-pandas (1.5.3+dfsg-2) ...
Setting up python3-pythran (0.11.0+ds-7) ...
Setting up python3-scipy (1.10.1-2) ...
Setting up python3-sklearn (1.2.1+dfsg-1) ...
Setting up python3-fonttools (4.38.0-1+b1) ...
Setting up python3-pil:i386 (9.4.0-1.1+b1) ...
Setting up python3-pil.imagetk:i386 (9.4.0-1.1+b1) ...
Setting up python3-ufolib2 (0.14.0+dfsg1-1) ...
Setting up python3-reportlab (3.6.12-1) ...
Setting up python3-matplotlib (3.6.3-1+b1) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.80+dfsg-4+b1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/python-pauvre-0.2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pauvre_0.2.3-2_source.changes
dpkg-buildpackage: info: source package python-pauvre
dpkg-buildpackage: info: source version 0.2.3-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py clean
running clean
removing '/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build' (and everything under it)
'build/bdist.linux-i386' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/functions.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/marginplot.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/custommargin.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/redwood.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/gfftools.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/pauvre_main.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/browser.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/version.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/synplot.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/stats.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/rcparams.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/__init__.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
copying pauvre/bamparse.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre
creating /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi
copying pauvre/lsi/test.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi
copying pauvre/lsi/helper.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi
copying pauvre/lsi/Q.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi
copying pauvre/lsi/T.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi
copying pauvre/lsi/__init__.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi
copying pauvre/lsi/lsi.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi
creating /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests
copying pauvre/tests/test_synplot.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests
copying pauvre/tests/__init__.py -> /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests
running egg_info
writing pauvre.egg-info/PKG-INFO
writing dependency_links to pauvre.egg-info/dependency_links.txt
writing entry points to pauvre.egg-info/entry_points.txt
writing requirements to pauvre.egg-info/requires.txt
writing top-level names to pauvre.egg-info/top_level.txt
reading manifest file 'pauvre.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pauvre.egg-info/SOURCES.txt'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/python-pauvre-0.2.3'
PYBUILDDIR="$(echo "/build/python-pauvre-0.2.3"/.pybuild/cpython3_3.*/build)" \
&& mkdir -p "${PYBUILDDIR}/pauvre/tests/testdata/alignments" \
"${PYBUILDDIR}/pauvre/tests/testresults" \
&& cp -r "/build/python-pauvre-0.2.3/debian/tests/gff_files" \
"${PYBUILDDIR}/pauvre/tests/testdata" \
&& BUILDDIR="${PYBUILDDIR}" PATH="/build/python-pauvre-0.2.3/debian/bin:$PATH" \
dh_auto_test \
&& rm "${PYBUILDDIR}/input" \
&& rm -r "${PYBUILDDIR}/pauvre/tests/testdata" \
"${PYBUILDDIR}/pauvre/tests/testresults"
I: pybuild base:240: cd /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build; python3.11 -m unittest discover -v
test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case.test_normal_plotting_scenario)
This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build
+ PYTHONPATH=/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build
+ exec python3 /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi'
/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:75: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only.
self.features.drop('dunno1', 1, inplace=True)
/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:76: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only.
self.features.drop('dunno2', 1, inplace=True)
/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:75: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only.
self.features.drop('dunno1', 1, inplace=True)
/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:76: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only.
self.features.drop('dunno2', 1, inplace=True)
/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:75: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only.
self.features.drop('dunno1', 1, inplace=True)
/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:76: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only.
self.features.drop('dunno2', 1, inplace=True)
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- Setting tick labels.
/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py:564: UserWarning: FixedFormatter should only be used together with FixedLocator
panel0.set_xticklabels(empty_string_labels)
- Running print_images.
Line sweep results:
TIME ELAPSED: 0.0014886856079101562
N^2 comparison results:
0
TIME ELAPSED: 0.0003352165222167969
8
8
The data is: Namespace(command='synplot', QUIET=False, aln_dir='/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/alignments', center_on='COX1', dpi=600, fileform=['pdf'], gff_paths=['/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff', '/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff', '/build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff'], gff_labels=['B. forskalii', 'P. bachei', 'M. leidyi'], no_timestamp=False, optimum_order=False, BASENAME=None, ratio=None, sandwich=False, start_with_aligned_genes=False, stop_codons=True, transparent=True, func=<function run_subtool at 0xf7a71118>)
The best gene combination is [0, 1, 2]
new fewest global intersections: 42
new fewest global intersections: 40
new fewest global intersections: 38
new fewest global intersections: 34
new fewest global intersections: 32
getting alignments
file list is:
{}
done getting alignments
seqs_dict is:
{}
sequence source featType start stop strand tags name center width lmost rmost track
0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0
1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0
2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0
3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0
4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0
5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0
6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0
7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0
8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0
9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0
10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0
11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0
12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0
13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0
14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0
len plottable 15
- i,j are currently: 0,1
stop: -782. start: -760.
- putting elements 0 through (including) 1 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0
- i,j are currently: 1,1
stop: 761. start: 1119.
- putting elements 1 through (including) 2 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0
- i,j are currently: 2,1
stop: 1495. start: 1495.
- putting elements 2 through (including) 3 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0
- i,j are currently: 3,1
stop: 2355. start: 2338.
- i,j are currently: 3,2
stop: 2355. start: 2547.
- putting elements 3 through (including) 5 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0
1 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0
- i,j are currently: 4,1
stop: 2539. start: 2547.
- putting elements 4 through (including) 5 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0
- i,j are currently: 5,1
stop: 3288. start: 3563.
- putting elements 5 through (including) 6 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0
- i,j are currently: 6,1
stop: 3935. start: 3938.
- putting elements 6 through (including) 7 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0
- i,j are currently: 7,1
stop: 5018. start: 5020.
- putting elements 7 through (including) 8 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0
- i,j are currently: 8,1
stop: 5206. start: 5220.
- putting elements 8 through (including) 9 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0
- i,j are currently: 9,1
stop: 6696. start: 6847.
- putting elements 9 through (including) 10 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0
- i,j are currently: 10,1
stop: 7909. start: 8439.
- putting elements 10 through (including) 11 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0
- i,j are currently: 11,1
stop: 9105. start: 9255.
- putting elements 11 through (including) 12 together
index sequence source featType start stop strand tags name center width lmost rmost track
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- i,j are currently: 12,1
stop: 9981. start: 10102.
- putting elements 12 through (including) 13 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0
- i,j are currently: 13,1
stop: 11155. start: 11076.
index sequence source featType start stop strand tags name center width lmost rmost track
0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0
1 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0
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sequence source featType start stop strand tags name center width lmost rmost track
0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0
1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0
2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0
3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0
4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0
5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0
6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0
7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0
8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0
9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0
10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0
11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0
12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0
len plottable 13
- i,j are currently: 0,1
stop: 768. start: 892.
- putting elements 0 through (including) 1 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0
- i,j are currently: 1,1
stop: 1470. start: 1750.
- putting elements 1 through (including) 2 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0
- i,j are currently: 2,1
stop: 2692. start: 2723.
- putting elements 2 through (including) 3 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0
- i,j are currently: 3,1
stop: 3285. start: 3286.
- putting elements 3 through (including) 4 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0
- i,j are currently: 4,1
stop: 4023. start: 4034.
- putting elements 4 through (including) 5 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0
- i,j are currently: 5,1
stop: 4699. start: 4753.
- putting elements 5 through (including) 6 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0
- i,j are currently: 6,1
stop: 5070. start: 5074.
- putting elements 6 through (including) 7 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0
- i,j are currently: 7,1
stop: 6141. start: 6306.
- putting elements 7 through (including) 8 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0
- i,j are currently: 8,1
stop: 7385. start: 7390.
- putting elements 8 through (including) 9 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0
- i,j are currently: 9,1
stop: 8901. start: 8904.
- putting elements 9 through (including) 10 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0
- i,j are currently: 10,1
stop: 9740. start: 9743.
- putting elements 10 through (including) 11 together
index sequence source featType start stop strand tags name center width lmost rmost track
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- i,j are currently: 11,1
stop: 9937. start: 10035.
- putting elements 11 through (including) 12 together
index sequence source featType start stop strand tags name center width lmost rmost track
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index sequence source featType start stop strand tags name center width lmost rmost track
0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0
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[1.0035e+04, 1.2700e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((10035, 1.27) ...)
length of myPatches is: 13
There are 13 patches at the end of gffplot_horizontal()
sequence source featType start stop strand tags name center width lmost rmost track
0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0
1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0
2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0
3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0
4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0
5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0
6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0
7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0
8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0
9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0
10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0
11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0
12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0
len plottable 13
- i,j are currently: 0,1
stop: 760. start: 764.
- putting elements 0 through (including) 1 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0
- i,j are currently: 1,1
stop: 1486. start: 1486.
- putting elements 1 through (including) 2 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0
- i,j are currently: 2,1
stop: 1809. start: 1813.
- putting elements 2 through (including) 3 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0
- i,j are currently: 3,1
stop: 2388. start: 2392.
- putting elements 3 through (including) 4 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0
- i,j are currently: 4,1
stop: 2759. start: 2760.
- putting elements 4 through (including) 5 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0
- i,j are currently: 5,1
stop: 3637. start: 3638.
- putting elements 5 through (including) 6 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0
- i,j are currently: 6,1
stop: 4729. start: 4734.
- putting elements 6 through (including) 7 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0
- i,j are currently: 7,1
stop: 5456. start: 5460.
- putting elements 7 through (including) 8 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0
- i,j are currently: 8,1
stop: 5654. start: 5766.
- putting elements 8 through (including) 9 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0
- i,j are currently: 9,1
stop: 7169. start: 7172.
- putting elements 9 through (including) 10 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0
- i,j are currently: 10,1
stop: 8038. start: 8014.
- i,j are currently: 10,2
stop: 8038. start: 9086.
- putting elements 10 through (including) 12 together
index sequence source featType start stop strand tags name center width lmost rmost track
0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0
1 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0
- i,j are currently: 11,1
stop: 9096. start: 9086.
index sequence source featType start stop strand tags name center width lmost rmost track
0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0
1 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0
normal path is: Path(array([[-7.6e+02, 2.7e-01],
[ 6.8e+02, 2.7e-01],
[ 7.6e+02, 0.0e+00],
[ 6.8e+02, -2.7e-01],
[-7.6e+02, -2.7e-01],
[-7.6e+02, 2.7e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((-760, 0.27) ...)
length of myPatches is: 1
normal path is: Path(array([[ 7.640e+02, 2.700e-01],
[ 1.406e+03, 2.700e-01],
[ 1.486e+03, 0.000e+00],
[ 1.406e+03, -2.700e-01],
[ 7.640e+02, -2.700e-01],
[ 7.640e+02, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((764, 0.27) ...)
length of myPatches is: 2
normal path is: Path(array([[ 1.486e+03, 2.700e-01],
[ 1.729e+03, 2.700e-01],
[ 1.809e+03, 0.000e+00],
[ 1.729e+03, -2.700e-01],
[ 1.486e+03, -2.700e-01],
[ 1.486e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((1486, 0.27) ...)
length of myPatches is: 3
normal path is: Path(array([[ 1.813e+03, 2.700e-01],
[ 2.308e+03, 2.700e-01],
[ 2.388e+03, 0.000e+00],
[ 2.308e+03, -2.700e-01],
[ 1.813e+03, -2.700e-01],
[ 1.813e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((1813, 0.27) ...)
length of myPatches is: 4
normal path is: Path(array([[ 2.392e+03, 2.700e-01],
[ 2.679e+03, 2.700e-01],
[ 2.759e+03, 0.000e+00],
[ 2.679e+03, -2.700e-01],
[ 2.392e+03, -2.700e-01],
[ 2.392e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((2392, 0.27) ...)
length of myPatches is: 5
normal path is: Path(array([[ 2.760e+03, 2.700e-01],
[ 3.557e+03, 2.700e-01],
[ 3.637e+03, 0.000e+00],
[ 3.557e+03, -2.700e-01],
[ 2.760e+03, -2.700e-01],
[ 2.760e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((2760, 0.27) ...)
length of myPatches is: 6
normal path is: Path(array([[ 3.638e+03, 2.700e-01],
[ 4.649e+03, 2.700e-01],
[ 4.729e+03, 0.000e+00],
[ 4.649e+03, -2.700e-01],
[ 3.638e+03, -2.700e-01],
[ 3.638e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((3638, 0.27) ...)
length of myPatches is: 7
normal path is: Path(array([[ 4.734e+03, 2.700e-01],
[ 5.376e+03, 2.700e-01],
[ 5.456e+03, 0.000e+00],
[ 5.376e+03, -2.700e-01],
[ 4.734e+03, -2.700e-01],
[ 4.734e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((4734, 0.27) ...)
length of myPatches is: 8
normal path is: Path(array([[ 5.460e+03, 2.700e-01],
[ 5.574e+03, 2.700e-01],
[ 5.654e+03, 0.000e+00],
[ 5.574e+03, -2.700e-01],
[ 5.460e+03, -2.700e-01],
[ 5.460e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((5460, 0.27) ...)
length of myPatches is: 9
normal path is: Path(array([[ 5.766e+03, 2.700e-01],
[ 7.089e+03, 2.700e-01],
[ 7.169e+03, 0.000e+00],
[ 7.089e+03, -2.700e-01],
[ 5.766e+03, -2.700e-01],
[ 5.766e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((5766, 0.27) ...)
length of myPatches is: 10
im in here feat len=2
plotting lff
plotting rff
there are 2 patches after gffplot_feature_hori
PathPatch6((7172, 0.27) ...)
length of myPatches is: 11
there are 2 patches after gffplot_feature_hori
PathPatch7((8014, 0.27) ...)
length of myPatches is: 12
im in here feat len=2
plotting lff
plotting rff
there are 2 patches after gffplot_feature_hori
PathPatch6((8014, 0.27) ...)
length of myPatches is: 13
there are 2 patches after gffplot_feature_hori
PathPatch7((9086, 0.27) ...)
length of myPatches is: 14
There are 14 patches at the end of gffplot_horizontal()
ok
----------------------------------------------------------------------
Ran 1 test in 65.070s
OK
The return code is: 0
make[1]: Leaving directory '/build/python-pauvre-0.2.3'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-pauvre/ -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pauvre-0.2.3/debian/python3-pauvre
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing pauvre.egg-info/PKG-INFO
writing dependency_links to pauvre.egg-info/dependency_links.txt
writing entry points to pauvre.egg-info/entry_points.txt
writing requirements to pauvre.egg-info/requires.txt
writing top-level names to pauvre.egg-info/top_level.txt
reading manifest file 'pauvre.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pauvre.egg-info/SOURCES.txt'
running install_lib
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/marginplot.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/custommargin.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/test.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/__init__.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/Q.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/T.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/lsi.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/helper.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/test.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/helper.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/Q.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/T.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__init__.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/lsi.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/redwood.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/gfftools.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/__init__.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/version.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/functions.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/rcparams.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/synplot.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/gfftools.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/browser.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/version.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests
creating /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__pycache__/__init__.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__pycache__/test_synplot.cpython-311.pyc -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/test_synplot.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__init__.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/stats.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/rcparams.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__init__.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
copying /build/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/bamparse.py -> /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/functions.py to functions.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/marginplot.py to marginplot.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/custommargin.py to custommargin.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/test.py to test.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/helper.py to helper.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/Q.py to Q.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/T.py to T.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/lsi.py to lsi.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/redwood.py to redwood.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/gfftools.py to gfftools.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/pauvre_main.py to pauvre_main.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/browser.py to browser.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/version.py to version.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/test_synplot.py to test_synplot.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/synplot.py to synplot.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/stats.py to stats.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/rcparams.py to rcparams.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/bamparse.py to bamparse.cpython-311.pyc
running install_egg_info
Copying pauvre.egg-info to /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre-0.2.3.egg-info
Skipping SOURCES.txt
running install_scripts
Installing pauvre script to /build/python-pauvre-0.2.3/debian/python3-pauvre/usr/bin
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
debian/rules override_dh_installexamples
make[1]: Entering directory '/build/python-pauvre-0.2.3'
# Do not install test script in Python lib
find debian -name scripts -type d | xargs rm -rf
dh_installexamples
sed -i 's/^git clone/#&/' `find debian -name test.sh`
make[1]: Leaving directory '/build/python-pauvre-0.2.3'
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pauvre' in '../python3-pauvre_0.2.3-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-pauvre_0.2.3-2_i386.buildinfo
dpkg-genchanges --build=binary -O../python-pauvre_0.2.3-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/107605 and its subdirectories
I: Current time: Thu Jun 6 01:59:04 -12 2024
I: pbuilder-time-stamp: 1717682344