I: pbuilder: network access will be disabled during build
I: Current time: Sun May 26 02:10:07 +14 2024
I: pbuilder-time-stamp: 1716639007
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [python-sqt_0.8.0-6.dsc]
I: copying [./python-sqt_0.8.0.orig.tar.gz]
I: copying [./python-sqt_0.8.0-6.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Dec  4 05:39:01 2022 +14
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-sqt_0.8.0-6.dsc: no acceptable signature found
dpkg-source: info: extracting python-sqt in python-sqt-0.8.0
dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz
dpkg-source: info: unpacking python-sqt_0.8.0-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fixme_ignore_failing_test.patch
dpkg-source: info: applying fixme_ignore_failing_test2.patch
dpkg-source: info: applying pytest.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/92158/tmp/hooks/D01_modify_environment starting
debug: Running on ionos6-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 May 26 02:10 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/92158/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/92158/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
  BASH_VERSION='5.2.15(1)-release'
  BUILDDIR=/build
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=i386
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15'
  DIRSTACK=()
  DISTRIBUTION=bookworm
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=i686
  HOST_ARCH=i386
  IFS=' 	
  '
  INVOCATION_ID=188973681e1b43cf9961713325f010d6
  LANG=C
  LANGUAGE=de_CH:de
  LC_ALL=C
  LD_LIBRARY_PATH=/usr/lib/libeatmydata
  LD_PRELOAD=libeatmydata.so
  MACHTYPE=i686-pc-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=92158
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8tr7CZqa/pbuilderrc_npAP --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8tr7CZqa/b2 --logfile b2/build.log --extrapackages usrmerge python-sqt_0.8.0-6.dsc'
  SUDO_GID=112
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://85.184.249.68:3128
I: uname -a
  Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux
I: ls -l /bin
  total 6036
  -rwxr-xr-x 1 root root 1408088 Feb 13  2023 bash
  -rwxr-xr-x 3 root root   38404 Sep 19  2022 bunzip2
  -rwxr-xr-x 3 root root   38404 Sep 19  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 19  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 28  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 19  2022 bzgrep
  -rwxr-xr-x 3 root root   38404 Sep 19  2022 bzip2
  -rwxr-xr-x 1 root root   17892 Sep 19  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 19  2022 bzmore
  -rwxr-xr-x 1 root root   42920 Sep 21  2022 cat
  -rwxr-xr-x 1 root root   79816 Sep 21  2022 chgrp
  -rwxr-xr-x 1 root root   67496 Sep 21  2022 chmod
  -rwxr-xr-x 1 root root   79816 Sep 21  2022 chown
  -rwxr-xr-x 1 root root  162024 Sep 21  2022 cp
  -rwxr-xr-x 1 root root  136916 Jan  6  2023 dash
  -rwxr-xr-x 1 root root  137160 Sep 21  2022 date
  -rwxr-xr-x 1 root root  100364 Sep 21  2022 dd
  -rwxr-xr-x 1 root root  108940 Sep 21  2022 df
  -rwxr-xr-x 1 root root  162152 Sep 21  2022 dir
  -rwxr-xr-x 1 root root   87760 Mar 24  2023 dmesg
  lrwxrwxrwx 1 root root       8 Dec 20  2022 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 20  2022 domainname -> hostname
  -rwxr-xr-x 1 root root   38760 Sep 21  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 25  2023 egrep
  -rwxr-xr-x 1 root root   34664 Sep 21  2022 false
  -rwxr-xr-x 1 root root      41 Jan 25  2023 fgrep
  -rwxr-xr-x 1 root root   84272 Mar 24  2023 findmnt
  -rwsr-xr-x 1 root root   30240 Mar 23  2023 fusermount
  -rwxr-xr-x 1 root root  218680 Jan 25  2023 grep
  -rwxr-xr-x 2 root root    2346 Apr 10  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr 10  2022 gzexe
  -rwxr-xr-x 1 root root  100952 Apr 10  2022 gzip
  -rwxr-xr-x 1 root root   21916 Dec 20  2022 hostname
  -rwxr-xr-x 1 root root   75756 Sep 21  2022 ln
  -rwxr-xr-x 1 root root   55600 Mar 24  2023 login
  -rwxr-xr-x 1 root root  162152 Sep 21  2022 ls
  -rwxr-xr-x 1 root root  214568 Mar 24  2023 lsblk
  -rwxr-xr-x 1 root root   96328 Sep 21  2022 mkdir
  -rwxr-xr-x 1 root root   84008 Sep 21  2022 mknod
  -rwxr-xr-x 1 root root   38792 Sep 21  2022 mktemp
  -rwxr-xr-x 1 root root   63016 Mar 24  2023 more
  -rwsr-xr-x 1 root root   58912 Mar 24  2023 mount
  -rwxr-xr-x 1 root root   13856 Mar 24  2023 mountpoint
  -rwxr-xr-x 1 root root  157932 Sep 21  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 20  2022 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  3  2023 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   38792 Sep 21  2022 pwd
  lrwxrwxrwx 1 root root       4 Feb 13  2023 rbash -> bash
  -rwxr-xr-x 1 root root   51080 Sep 21  2022 readlink
  -rwxr-xr-x 1 root root   75720 Sep 21  2022 rm
  -rwxr-xr-x 1 root root   51080 Sep 21  2022 rmdir
  -rwxr-xr-x 1 root root   22308 Nov  3  2022 run-parts
  -rwxr-xr-x 1 root root  133224 Jan  6  2023 sed
  lrwxrwxrwx 1 root root       9 May 26 02:10 sh -> /bin/bash
  -rwxr-xr-x 1 root root   38760 Sep 21  2022 sleep
  -rwxr-xr-x 1 root root   87976 Sep 21  2022 stty
  -rwsr-xr-x 1 root root   83492 Mar 24  2023 su
  -rwxr-xr-x 1 root root   38792 Sep 21  2022 sync
  -rwxr-xr-x 1 root root  598456 Apr  7  2023 tar
  -rwxr-xr-x 1 root root   13860 Nov  3  2022 tempfile
  -rwxr-xr-x 1 root root  120776 Sep 21  2022 touch
  -rwxr-xr-x 1 root root   34664 Sep 21  2022 true
  -rwxr-xr-x 1 root root   17892 Mar 23  2023 ulockmgr_server
  -rwsr-xr-x 1 root root   30236 Mar 24  2023 umount
  -rwxr-xr-x 1 root root   38760 Sep 21  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr 10  2022 uncompress
  -rwxr-xr-x 1 root root  162152 Sep 21  2022 vdir
  -rwxr-xr-x 1 root root   71216 Mar 24  2023 wdctl
  lrwxrwxrwx 1 root root       8 Dec 20  2022 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr 10  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr 10  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr 10  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr 10  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr 10  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr 10  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr 10  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr 10  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr 10  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr 10  2022 znew
I: user script /srv/workspace/pbuilder/92158/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, python3-cutadapt, python3-pysam, python3-pytest, python3-seaborn, python3-xopen
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
  Package python3-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on cython3; however:
  Package cython3 is not installed.
 pbuilder-satisfydepends-dummy depends on python3-cutadapt; however:
  Package python3-cutadapt is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pysam; however:
  Package python3-pysam is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pytest; however:
  Package python3-pytest is not installed.
 pbuilder-satisfydepends-dummy depends on python3-seaborn; however:
  Package python3-seaborn is not installed.
 pbuilder-satisfydepends-dummy depends on python3-xopen; however:
  Package python3-xopen is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-brotli{a} python3-contourpy{a} python3-cutadapt{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-dnaio{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-iniconfig{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-py{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-pythran{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-xopen{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 
0 packages upgraded, 166 newly installed, 0 to remove and 0 not upgraded.
Need to get 130 MB of archives. After unpacking 667 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 pigz i386 2.6-1 [64.6 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B]
Get: 12 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 libtcl8.6 i386 8.6.13+dfsg-2 [1095 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-4 [410 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 libxft2 i386 2.3.6-1 [62.8 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 libtk8.6 i386 8.6.13-2 [824 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-4.1 [622 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 blt i386 2.5.3+dfsg-4.1 [14.9 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 cython3 i386 0.29.32-2+b1 [1297 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 55 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 57 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 64 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 66 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-2 [131 kB]
Get: 67 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB]
Get: 68 http://deb.debian.org/debian bookworm/main i386 fonts-lyx all 2.3.7-1 [186 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB]
Get: 70 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB]
Get: 71 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B]
Get: 72 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB]
Get: 74 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB]
Get: 77 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB]
Get: 78 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-8 [412 kB]
Get: 80 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB]
Get: 82 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB]
Get: 83 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB]
Get: 84 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB]
Get: 85 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 86 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB]
Get: 87 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB]
Get: 88 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB]
Get: 89 http://deb.debian.org/debian bookworm/main i386 libimagequant0 i386 2.17.0-1 [32.9 kB]
Get: 90 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB]
Get: 91 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB]
Get: 92 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 93 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 94 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 95 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB]
Get: 96 http://deb.debian.org/debian bookworm/main i386 libopenblas0-pthread i386 0.3.21+ds-4 [5148 kB]
Get: 97 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB]
Get: 98 http://deb.debian.org/debian bookworm/main i386 liblbfgsb0 i386 3.0+dfsg.4-1 [28.5 kB]
Get: 99 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB]
Get: 100 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB]
Get: 101 http://deb.debian.org/debian bookworm/main i386 libopenblas0 i386 0.3.21+ds-4 [32.6 kB]
Get: 102 http://deb.debian.org/debian bookworm/main i386 libopenblas-pthread-dev i386 0.3.21+ds-4 [3447 kB]
Get: 103 http://deb.debian.org/debian bookworm/main i386 libopenblas-dev i386 0.3.21+ds-4 [44.9 kB]
Get: 104 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-1+b1 [196 kB]
Get: 105 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB]
Get: 106 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB]
Get: 107 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB]
Get: 108 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B]
Get: 109 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B]
Get: 110 http://deb.debian.org/debian bookworm/main i386 libqhull-r8.0 i386 2020.2-5 [260 kB]
Get: 111 http://deb.debian.org/debian bookworm/main i386 libraqm0 i386 0.7.0-4.1 [11.1 kB]
Get: 112 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB]
Get: 113 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB]
Get: 114 http://deb.debian.org/debian bookworm/main i386 libwebpdemux2 i386 1.2.4-0.1 [99.7 kB]
Get: 115 http://deb.debian.org/debian bookworm/main i386 libwebpmux3 i386 1.2.4-0.1 [111 kB]
Get: 116 http://deb.debian.org/debian bookworm/main i386 libxsimd-dev i386 8.1.0-7 [88.8 kB]
Get: 117 http://deb.debian.org/debian bookworm/main i386 libxslt1.1 i386 1.1.35-1 [253 kB]
Get: 118 http://deb.debian.org/debian bookworm/main i386 python-matplotlib-data all 3.6.3-1 [2744 kB]
Get: 119 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B]
Get: 120 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB]
Get: 121 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB]
Get: 122 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B]
Get: 123 http://deb.debian.org/debian bookworm/main i386 python3-appdirs all 1.4.4-3 [13.0 kB]
Get: 124 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB]
Get: 125 http://deb.debian.org/debian bookworm/main i386 python3-gast all 0.5.2-2 [9364 B]
Get: 126 http://deb.debian.org/debian bookworm/main i386 python3-beniget all 0.4.1-3 [9920 B]
Get: 127 http://deb.debian.org/debian bookworm/main i386 python3-brotli i386 1.0.9-2+b6 [295 kB]
Get: 128 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 129 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB]
Get: 130 http://deb.debian.org/debian bookworm/main i386 python3-contourpy i386 1.0.7-1+b1 [184 kB]
Get: 131 http://deb.debian.org/debian bookworm/main i386 python3-xopen all 1.7.0-2 [16.9 kB]
Get: 132 http://deb.debian.org/debian bookworm/main i386 python3-dnaio i386 0.10.0-1+b1 [59.9 kB]
Get: 133 http://deb.debian.org/debian bookworm/main i386 python3-cutadapt i386 4.2-1+b1 [227 kB]
Get: 134 http://deb.debian.org/debian bookworm/main i386 python3-cycler all 0.11.0-1 [8020 B]
Get: 135 http://deb.debian.org/debian bookworm/main i386 python3-six all 1.16.0-4 [17.5 kB]
Get: 136 http://deb.debian.org/debian bookworm/main i386 python3-dateutil all 2.8.2-2 [78.3 kB]
Get: 137 http://deb.debian.org/debian bookworm/main i386 python3-decorator all 5.1.1-3 [14.9 kB]
Get: 138 http://deb.debian.org/debian bookworm/main i386 python3-ply all 3.11-5 [65.8 kB]
Get: 139 http://deb.debian.org/debian bookworm/main i386 python3-pythran i386 0.11.0+ds-7 [427 kB]
Get: 140 http://deb.debian.org/debian bookworm/main i386 python3-scipy i386 1.10.1-2 [15.2 MB]
Get: 141 http://deb.debian.org/debian bookworm/main i386 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB]
Get: 142 http://deb.debian.org/debian bookworm/main i386 python3-mpmath all 1.2.1-2 [418 kB]
Get: 143 http://deb.debian.org/debian bookworm/main i386 python3-sympy all 1.11.1-1 [4358 kB]
Get: 144 http://deb.debian.org/debian bookworm/main i386 python3-tz all 2022.7.1-3 [30.1 kB]
Get: 145 http://deb.debian.org/debian bookworm/main i386 python3-fs all 2.4.16-2 [95.2 kB]
Get: 146 http://deb.debian.org/debian bookworm/main i386 python3-lxml i386 4.9.2-1+b1 [1182 kB]
Get: 147 http://deb.debian.org/debian bookworm/main i386 python3-lz4 i386 4.0.2+dfsg-1+b2 [25.1 kB]
Get: 148 http://deb.debian.org/debian bookworm/main i386 unicode-data all 15.0.0-1 [7984 kB]
Get: 149 http://deb.debian.org/debian bookworm/main i386 python3-fonttools i386 4.38.0-1+b1 [1010 kB]
Get: 150 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 151 http://deb.debian.org/debian bookworm/main i386 python3-kiwisolver i386 1.4.4-1+b1 [63.0 kB]
Get: 152 http://deb.debian.org/debian bookworm/main i386 python3-pil i386 9.4.0-1.1+b1 [473 kB]
Get: 153 http://deb.debian.org/debian bookworm/main i386 python3-tk i386 3.11.2-2 [99.1 kB]
Get: 154 http://deb.debian.org/debian bookworm/main i386 python3-pil.imagetk i386 9.4.0-1.1+b1 [74.7 kB]
Get: 155 http://deb.debian.org/debian bookworm/main i386 python3-pyparsing all 3.0.9-1 [138 kB]
Get: 156 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB]
Get: 157 http://deb.debian.org/debian bookworm/main i386 python3-matplotlib i386 3.6.3-1+b1 [6891 kB]
Get: 158 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB]
Get: 159 http://deb.debian.org/debian bookworm/main i386 python3-pandas-lib i386 1.5.3+dfsg-2 [3382 kB]
Get: 160 http://deb.debian.org/debian bookworm/main i386 python3-pandas all 1.5.3+dfsg-2 [2885 kB]
Get: 161 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get: 162 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB]
Get: 163 http://deb.debian.org/debian bookworm/main i386 python3-pysam i386 0.20.0+ds-3+b1 [1708 kB]
Get: 164 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB]
Get: 165 http://deb.debian.org/debian bookworm/main i386 python3-seaborn all 0.12.2-1 [215 kB]
Get: 166 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB]
Fetched 130 MB in 1s (91.8 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package pigz.
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Unpacking pigz (2.6-1) ...
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Unpacking libpython3.11-minimal:i386 (3.11.2-6) ...
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Unpacking libexpat1:i386 (2.5.0-1) ...
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Unpacking python3.11-minimal (3.11.2-6) ...
Setting up libpython3.11-minimal:i386 (3.11.2-6) ...
Setting up libexpat1:i386 (2.5.0-1) ...
Setting up python3.11-minimal (3.11.2-6) ...
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Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ...
Unpacking python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.0.0_all.deb ...
Unpacking media-types (10.0.0) ...
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Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package libreadline8:i386.
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Unpacking libreadline8:i386 (8.2-1.3) ...
Selecting previously unselected package libpython3.11-stdlib:i386.
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Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ...
Selecting previously unselected package python3.11.
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Unpacking python3.11 (3.11.2-6) ...
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Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ...
Setting up python3-minimal (3.11.2-1+b1) ...
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Preparing to unpack .../000-python3_3.11.2-1+b1_i386.deb ...
Unpacking python3 (3.11.2-1+b1) ...
Selecting previously unselected package sensible-utils.
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Unpacking libmagic-mgc (1:5.44-3) ...
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Unpacking libmagic1:i386 (1:5.44-3) ...
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Unpacking file (1:5.44-3) ...
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Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../006-libuchardet0_0.0.7-1_i386.deb ...
Unpacking libuchardet0:i386 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../007-groff-base_1.22.4-10_i386.deb ...
Unpacking groff-base (1.22.4-10) ...
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Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:i386.
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Unpacking libpipeline1:i386 (1.5.7-1) ...
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Unpacking man-db (2.11.2-2) ...
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Unpacking m4 (1.4.19-3) ...
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Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
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Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libtcl8.6:i386.
Preparing to unpack .../016-libtcl8.6_8.6.13+dfsg-2_i386.deb ...
Unpacking libtcl8.6:i386 (8.6.13+dfsg-2) ...
Selecting previously unselected package libbrotli1:i386.
Preparing to unpack .../017-libbrotli1_1.0.9-2+b6_i386.deb ...
Unpacking libbrotli1:i386 (1.0.9-2+b6) ...
Selecting previously unselected package libpng16-16:i386.
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Unpacking libpng16-16:i386 (1.6.39-2) ...
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Unpacking fontconfig-config (2.14.1-4) ...
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Unpacking libfontconfig1:i386 (2.14.1-4) ...
Selecting previously unselected package libxau6:i386.
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Unpacking libxau6:i386 (1:1.0.9-1) ...
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Selecting previously unselected package python3-pil.imagetk:i386.
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Unpacking python3-pil.imagetk:i386 (9.4.0-1.1+b1) ...
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Preparing to unpack .../144-python3-packaging_23.0-1_all.deb ...
Unpacking python3-packaging (23.0-1) ...
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Unpacking python3-matplotlib (3.6.3-1+b1) ...
Selecting previously unselected package python3-more-itertools.
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Unpacking python3-more-itertools (8.10.0-2) ...
Selecting previously unselected package python3-pandas-lib:i386.
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Unpacking python3-pluggy (1.0.0+repack-1) ...
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Unpacking python3-pysam (0.20.0+ds-3+b1) ...
Selecting previously unselected package python3-pytest.
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Unpacking python3-pytest (7.2.1-2) ...
Selecting previously unselected package python3-seaborn.
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Unpacking python3-seaborn (0.12.2-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../154-python3-setuptools_66.1.1-1_all.deb ...
Unpacking python3-setuptools (66.1.1-1) ...
Setting up libhtscodecs2:i386 (1.3.0-4) ...
Setting up media-types (10.0.0) ...
Setting up libpipeline1:i386 (1.5.7-1) ...
Setting up libgraphite2-3:i386 (1.3.14-1) ...
Setting up liblcms2-2:i386 (2.14-2) ...
Setting up libxau6:i386 (1:1.0.9-1) ...
Setting up libpsl5:i386 (0.21.2-1) ...
Setting up libboost1.74-dev:i386 (1.74.0+ds1-20) ...
Setting up libicu72:i386 (72.1-3) ...
Setting up liblerc4:i386 (4.0.0+ds-2) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:i386 (2.74.6-2) ...
No schema files found: doing nothing.
Setting up fonts-lyx (2.3.7-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:i386 (1.0.9-2+b6) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libnghttp2-14:i386 (1.52.0-1) ...
Setting up libmagic1:i386 (1:5.44-3) ...
Setting up libdeflate0:i386 (1.14-1) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up libqhull-r8.0:i386 (2020.2-5) ...
Setting up file (1:5.44-3) ...
Setting up libjbig0:i386 (2.1-6.1) ...
Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ...
Setting up unicode-data (15.0.0-1) ...
Setting up libxsimd-dev:i386 (8.1.0-7) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:i386 (3.11.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
Setting up libexpat1-dev:i386 (2.5.0-1) ...
Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ...
Setting up libx11-data (2:1.8.4-2) ...
Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libfribidi0:i386 (1.0.8-2.1) ...
Setting up libimagequant0:i386 (2.17.0-1) ...
Setting up libpng16-16:i386 (1.6.39-2) ...
Setting up libtcl8.6:i386 (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-12) ...
Setting up fonts-dejavu-core (2.37-6) ...
Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ...
Setting up libgfortran5:i386 (12.2.0-14) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:i386 (1.2.4-0.1) ...
Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up pigz (2.6-1) ...
Setting up libtiff6:i386 (4.5.0-5) ...
Setting up libuchardet0:i386 (0.0.7-1) ...
Setting up libopenjp2-7:i386 (2.5.0-1+b1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:i386 (1.10.0-3+b1) ...
Setting up libboost-dev:i386 (1.74.0.3) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up python-matplotlib-data (3.6.3-1) ...
Setting up libwebpmux3:i386 (1.2.4-0.1) ...
Setting up libbsd0:i386 (0.11.7-2) ...
Setting up libelf1:i386 (0.188-2.1) ...
Setting up readline-common (8.2-1.3) ...
Setting up libxml2:i386 (2.9.14+dfsg-1.1+b3) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libxdmcp6:i386 (1:1.1.2-3) ...
Setting up liblapack3:i386 (3.11.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up libxcb1:i386 (1.15-1) ...
Setting up gettext (0.21-12) ...
Setting up libopenblas0-pthread:i386 (0.3.21+ds-4) ...
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/i386-linux-gnu/libopenblas.so.0 (libopenblas.so.0-i386-linux-gnu) in auto mode
Setting up libtool (2.4.7-5) ...
Setting up fontconfig-config (2.14.1-4) ...
Setting up libwebpdemux2:i386 (1.2.4-0.1) ...
Setting up libreadline8:i386 (8.2-1.3) ...
Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up libfreetype6:i386 (2.12.1+dfsg-4) ...
Setting up libjs-sphinxdoc (5.3.0-4) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up libopenblas0:i386 (0.3.21+ds-4) ...
Setting up groff-base (1.22.4-10) ...
Setting up libxslt1.1:i386 (1.1.35-1) ...
Setting up libx11-6:i386 (2:1.8.4-2) ...
Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ...
Setting up libfontconfig1:i386 (2.14.1-4) ...
Setting up liblbfgsb0:i386 (3.0+dfsg.4-1) ...
Setting up libopenblas-pthread-dev:i386 (0.3.21+ds-4) ...
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode
update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/i386-linux-gnu/libopenblas.so (libopenblas.so-i386-linux-gnu) in auto mode
Setting up libxrender1:i386 (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.11-stdlib:i386 (3.11.2-6) ...
Setting up libxext6:i386 (2:1.3.4-1+b1) ...
Setting up libcurl3-gnutls:i386 (7.88.1-8) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libopenblas-dev:i386 (0.3.21+ds-4) ...
Setting up libraqm0:i386 (0.7.0-4.1) ...
Setting up libxss1:i386 (1:1.2.3-1) ...
Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ...
Setting up python3.11 (3.11.2-6) ...
Setting up libxft2:i386 (2.3.6-1) ...
Setting up libhts3:i386 (1.16+ds-3) ...
Setting up libpython3.11:i386 (3.11.2-6) ...
Setting up libtk8.6:i386 (8.6.13-2) ...
Setting up debhelper (13.11.4) ...
Setting up python3 (3.11.2-1+b1) ...
Setting up python3-tz (2022.7.1-3) ...
Setting up python3-six (1.16.0-4) ...
Setting up python3-decorator (5.1.1-3) ...
Setting up python3-packaging (23.0-1) ...
Setting up python3-pyparsing (3.0.9-1) ...
Setting up libpython3.11-dev:i386 (3.11.2-6) ...
Setting up python3-brotli (1.0.9-2+b6) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.4.4-1+b1) ...
Setting up cython3 (0.29.32-2+b1) ...
Setting up python3-pluggy (1.0.0+repack-1) ...
Setting up python3-lxml:i386 (4.9.2-1+b1) ...
Setting up python3-dateutil (2.8.2-2) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-lib2to3 (3.11.2-2) ...
Setting up python3-appdirs (1.4.4-3) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-2) ...
Setting up dh-python (5.20230130) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.11.1-1) ...
Setting up python3-attr (22.2.0-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up python3-pysam (0.20.0+ds-3+b1) ...
Setting up libpython3-dev:i386 (3.11.2-1+b1) ...
Setting up python3-setuptools (66.1.1-1) ...
Setting up python3-py (1.11.0-1) ...
Setting up python3-lz4 (4.0.2+dfsg-1+b2) ...
Setting up python3.11-dev (3.11.2-6) ...
Setting up python3-pytest (7.2.1-2) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-ply (3.11-5) ...
Setting up python3-gast (0.5.2-2) ...
Setting up python3-all (3.11.2-1+b1) ...
Setting up python3-tk:i386 (3.11.2-2) ...
Setting up python3-fs (2.4.16-2) ...
Setting up python3-beniget (0.4.1-3) ...
Setting up python3-xopen (1.7.0-2) ...
Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ...
Setting up python3-dev (3.11.2-1+b1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-contourpy (1.0.7-1+b1) ...
Setting up python3-dnaio (0.10.0-1+b1) ...
Setting up python3-all-dev (3.11.2-1+b1) ...
Setting up python3-pandas-lib:i386 (1.5.3+dfsg-2) ...
Setting up python3-pandas (1.5.3+dfsg-2) ...
Setting up python3-cutadapt (4.2-1+b1) ...
Setting up python3-pythran (0.11.0+ds-7) ...
Setting up python3-scipy (1.10.1-2) ...
Setting up python3-fonttools (4.38.0-1+b1) ...
Setting up python3-pil:i386 (9.4.0-1.1+b1) ...
Setting up python3-pil.imagetk:i386 (9.4.0-1.1+b1) ...
Setting up python3-ufolib2 (0.14.0+dfsg1-1) ...
Setting up python3-matplotlib (3.6.3-1+b1) ...
Setting up python3-seaborn (0.12.2-1) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/92158/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
removed '/etc/unsupported-skip-usrmerge-conversion'
The system has been successfully converted.
I: user script /srv/workspace/pbuilder/92158/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/python-sqt-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../python-sqt_0.8.0-6_source.changes
dpkg-buildpackage: info: source package python-sqt
dpkg-buildpackage: info: source version 0.8.0-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
	pybuild --clean -i python{version} -p 3.11
I: pybuild base:240: python3.11 setup.py clean 
running clean
removing '/build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build' (and everything under it)
'build/bdist.linux-i386' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/python3-sqt.substvars debian/files
	rm -fr -- debian/python3-sqt/ debian/tmp/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules binary
dh binary --with python3 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
	pybuild --configure -i python{version} -p 3.11
I: pybuild base:240: python3.11 setup.py config 
running config
   dh_auto_build -O--buildsystem=pybuild
	pybuild --build -i python{version} -p 3.11
I: pybuild base:240: /usr/bin/python3 setup.py build 
running build
running build_py
creating /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/math.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/cigar.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/align.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/utils.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/args.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/reads.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/ansicolor.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/_version.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/__main__.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/_codons.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/dna.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/intervaltree.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/__init__.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/colorspace.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/compat.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/region.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
copying sqt/qualtrim.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt
creating /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/fasta.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/bam.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/sff.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/gtf.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io
copying sqt/io/__init__.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io
creating /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/coverage.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fastaextract.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/bameof.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/checkfastqpe.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/randomseq.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/align.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/histogram.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fastagrep.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/cutvect.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/simreads.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/mutate.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/samsetop.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/chars.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/compare_sequences.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/checkvcfref.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/samfixn.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/bamstats.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/readcov.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fastastats.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/qgramfreq.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fixbam64.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/__init__.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/fastxmod.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/translate.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/qualityguess.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/readlenhisto.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/addadapt.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
copying sqt/commands/bam2fastq.py -> /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands
UPDATING /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py
set /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
/build/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
  if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION):
INFO: Disabling color, you really want to install colorlog.
Disabling color, you really want to install colorlog.
/usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
  if not hasattr(numpy, method):
/usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
  obj = getattr(themodule, elem)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-sqt-0.8.0/sqt/_helpers.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling sqt/_helpers.pyx because it changed.
[1/1] Cythonizing sqt/_helpers.pyx
sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’:
sqt/_helpers.c:6699:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 6699 |     __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]);
      |                                         ~~~~~~~~~~^~~~~~~~~~~~
sqt/_helpers.c:6708:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 6708 |     __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]);
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
sqt/_helpers.c:6717:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 6717 |     __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]);
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
   debian/rules override_dh_auto_test
make[1]: Verzeichnis „/build/python-sqt-0.8.0“ wird betreten
LC_ALL=C.UTF-8 dh_auto_test
	pybuild --test --test-pytest -i python{version} -p 3.11
I: pybuild base:240: cd /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build; python3.11 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack
rootdir: /build/python-sqt-0.8.0, configfile: pytest.ini
collected 45 items

tests/testalign.py .......                                               [ 15%]
tests/testcigar.py ...........                                           [ 40%]
tests/testcolorspace.py ..                                               [ 44%]
tests/testdna.py ......                                                  [ 57%]
tests/testfasta.py .............                                         [ 86%]
tests/testindexedfasta.py ...                                            [ 93%]
tests/testintervaltree.py .                                              [ 95%]
tests/testmedian.py .                                                    [ 97%]
tests/testregion.py .                                                    [100%]

============================== 45 passed in 6.53s ==============================
	rm -fr -- /tmp/dh-xdg-rundir-MDY4iHNq
make[1]: Verzeichnis „/build/python-sqt-0.8.0“ wird verlassen
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
	rm -f -- debian/python3-sqt.substvars
	rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/
   dh_auto_install --destdir=debian/python3-sqt/ -O--buildsystem=pybuild
	install -m0755 -d /build/python-sqt-0.8.0/debian/python3-sqt
	pybuild --install -i python{version} -p 3.11 --dest-dir /build/python-sqt-0.8.0/debian/python3-sqt
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-sqt-0.8.0/debian/python3-sqt 
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
UPDATING /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py
set /build/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
/build/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
  if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION):
INFO: Disabling color, you really want to install colorlog.
Disabling color, you really want to install colorlog.
/usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
  if not hasattr(numpy, method):
/usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar.
  obj = getattr(themodule, elem)
   dh_installdocs -O--buildsystem=pybuild
	install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt
	install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian
	install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright
   dh_installchangelogs -O--buildsystem=pybuild
	install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt
	install -p -m0644 debian/.debhelper/generated/python3-sqt/dh_installchangelogs.dch.trimmed debian/python3-sqt/usr/share/doc/python3-sqt/changelog.Debian
   dh_installman -O--buildsystem=pybuild
	install -m0755 -d debian/python3-sqt/usr/share/man/man1/
	install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1
	man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
	mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1
	chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1
   dh_python3 -O--buildsystem=pybuild
D: dh_python3 dh_python3:179: version: 5.20230130
D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild'])
D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11)
D: dh_python3 debhelper:183: source=python-sqt, binary packages=['python3-sqt']
D: dh_python3 dh_python3:204: processing package python3-sqt...
D: dh_python3 fs:52: moving files from debian/python3-sqt/usr/lib/python3.11/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/
D: dh_python3 fs:400: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.11')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-sqt
D: dh_python3 pydist:173: trying to find dependency for cutadapt (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 pydist:173: trying to find dependency for matplotlib (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 pydist:173: trying to find dependency for pysam!=0.9.0 (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 pydist:173: trying to find dependency for seaborn (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 pydist:173: trying to find dependency for xopen (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 depends:281: D={'python3 (<< 3.12)', 'python3 (>= 3.11~)', 'python3-matplotlib', 'python3-xopen', 'python3-cutadapt', 'python3-pysam', 'python3-seaborn', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[]
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
	cd debian/python3-sqt
	chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1
	gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1
	cd '/build/python-sqt-0.8.0'
   dh_fixperms -O--buildsystem=pybuild
	find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
	find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
   dh_missing -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
	dwz -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-i386-linux-gnu.so
   dh_strip -a -O--buildsystem=pybuild
	install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/72
	objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-i386-linux-gnu.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/72/a0ff247ea630d6c8fafd8c2145c1969df05c5a.debug
	chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/72/a0ff247ea630d6c8fafd8c2145c1969df05c5a.debug
	strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-i386-linux-gnu.so
	objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/72/a0ff247ea630d6c8fafd8c2145c1969df05c5a.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-i386-linux-gnu.so
	install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc
	ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym
	install -m0755 -d debian/.debhelper/python3-sqt
   dh_makeshlibs -a -O--buildsystem=pybuild
	rm -f debian/python3-sqt/DEBIAN/shlibs
   dh_shlibdeps -a -O--buildsystem=pybuild
	install -m0755 -d debian/python3-sqt/DEBIAN
	dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-i386-linux-gnu.so
   dh_installdeb -O--buildsystem=pybuild
	install -m0755 -d debian/python3-sqt/DEBIAN
	printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst
	cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst
	chmod 0755 -- debian/python3-sqt/DEBIAN/postinst
	printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm
	cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm
	chmod 0755 -- debian/python3-sqt/DEBIAN/prerm
   dh_gencontrol -O--buildsystem=pybuild
	install -m0755 -d debian/python3-sqt/DEBIAN
	echo misc:Depends= >> debian/python3-sqt.substvars
	echo misc:Pre-Depends= >> debian/python3-sqt.substvars
	install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN
	dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" -DBuild-Ids=72a0ff247ea630d6c8fafd8c2145c1969df05c5a -DSection=debug -UMulti-Arch -UReplaces -UBreaks
	chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control
	dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -Pdebian/python3-sqt
	chmod 0644 -- debian/python3-sqt/DEBIAN/control
   dh_md5sums -O--buildsystem=pybuild
	install -m0755 -d debian/python3-sqt/DEBIAN
	cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums
	install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN
	cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums
   dh_builddeb -O--buildsystem=pybuild
	dpkg-deb --root-owner-group --build debian/python3-sqt ..
	dpkg-deb --root-owner-group --build debian/.debhelper/python3-sqt/dbgsym-root ..
dpkg-deb: Paket »python3-sqt« wird in »../python3-sqt_0.8.0-6_i386.deb« gebaut.
dpkg-deb: Paket »python3-sqt-dbgsym« wird in »../python3-sqt-dbgsym_0.8.0-6_i386.deb« gebaut.
 dpkg-genbuildinfo --build=binary -O../python-sqt_0.8.0-6_i386.buildinfo
 dpkg-genchanges --build=binary -O../python-sqt_0.8.0-6_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/92158/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/92158/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/92158 and its subdirectories
I: Current time: Sun May 26 02:11:23 +14 2024
I: pbuilder-time-stamp: 1716639083