W: cgroups are not available on the host, not using them.
unshare: unshare failed: Cannot allocate memory
W: pbuilder: unshare CLONE_NEWNET not available
I: pbuilder: network access is available during build!
I: Current time: Sat Apr 22 05:19:24 +14 2023
I: pbuilder-time-stamp: 1682090364
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [qcat_1.1.0-6.dsc]
I: copying [./qcat_1.1.0.orig.tar.gz]
I: copying [./qcat_1.1.0-6.debian.tar.xz]
I: Extracting source
gpgv: Signature made Wed Nov 30 09:58:41 2022 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./qcat_1.1.0-6.dsc: no acceptable signature found
dpkg-source: info: extracting qcat in qcat-1.1.0
dpkg-source: info: unpacking qcat_1.1.0.orig.tar.gz
dpkg-source: info: unpacking qcat_1.1.0-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying yaml_safe_load.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/19927/tmp/hooks/D01_modify_environment starting
debug: Running on ionos2-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Apr 22 05:19 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/19927/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/19927/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
BASH_VERSION='5.2.15(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=i386
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7'
DIRSTACK=()
DISTRIBUTION=bookworm
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=i686
HOST_ARCH=i386
IFS='
'
LANG=C
LANGUAGE=de_CH:de
LC_ALL=C
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
MACHTYPE=i686-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=19927
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mq07dLNM/pbuilderrc_erKg --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mq07dLNM/b2 --logfile b2/build.log --extrapackages usrmerge qcat_1.1.0-6.dsc'
SUDO_GID=112
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://78.137.99.97:3128
I: uname -a
Linux i-capture-the-hostname 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux
I: ls -l /bin
total 6036
-rwxr-xr-x 1 root root 1408088 Feb 13 10:21 bash
-rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 21 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 21 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 21 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash
-rwxr-xr-x 1 root root 137160 Sep 21 2022 date
-rwxr-xr-x 1 root root 100364 Sep 21 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 21 2022 df
-rwxr-xr-x 1 root root 162152 Sep 21 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg
lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 21 2022 echo
-rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep
-rwxr-xr-x 1 root root 34664 Sep 21 2022 false
-rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep
-rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt
-rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount
-rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname
-rwxr-xr-x 1 root root 75756 Sep 21 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 24 01:43 login
-rwxr-xr-x 1 root root 162152 Sep 21 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk
-rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 24 00:20 more
-rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount
-rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 21 2022 mv
lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd
lrwxrwxrwx 1 root root 4 Feb 13 10:21 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 21 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 3 06:31 run-parts
-rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed
lrwxrwxrwx 1 root root 9 Apr 22 05:19 sh -> /bin/bash
-rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 21 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 24 00:20 su
-rwxr-xr-x 1 root root 38792 Sep 21 2022 sync
-rwxr-xr-x 1 root root 598456 Apr 7 04:25 tar
-rwxr-xr-x 1 root root 13860 Nov 3 06:31 tempfile
-rwxr-xr-x 1 root root 120776 Sep 21 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 21 2022 true
-rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount
-rwxr-xr-x 1 root root 38760 Sep 21 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl
lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/19927/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-six, python3-pytest-runner, python3-pytest, python3-pytest-cov, python3-biopython, python3-parasail, python3-yaml
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-six; however:
Package python3-six is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however:
Package python3-pytest-runner is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however:
Package python3-pytest-cov is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-parasail; however:
Package python3-parasail is not installed.
pbuilder-satisfydepends-dummy depends on python3-yaml; however:
Package python3-yaml is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libparasail-dev{a} libparasail8{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libyaml-0-2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-attr{a} python3-biopython{a} python3-coverage{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-parasail{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-pytest-cov{a} python3-pytest-runner{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3-six{a} python3-wheel{a} python3-yaml{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs
0 packages upgraded, 111 newly installed, 0 to remove and 0 not upgraded.
Need to get 59.4 MB of archives. After unpacking 221 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 mailcap all 3.70+nmu1 [32.0 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 mime-support all 3.66 [10.9 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B]
Get: 15 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 sgml-base all 1.31 [15.4 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-2 [131 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 libfontenc1 i386 1:1.1.4-1 [24.5 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-4 [410 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 fonts-urw-base35 all 20200910-7 [10.8 MB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB]
Get: 64 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB]
Get: 66 http://deb.debian.org/debian bookworm/main i386 libimagequant0 i386 2.17.0-1 [32.9 kB]
Get: 67 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB]
Get: 68 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get: 70 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-metadata all 12-4 [6532 B]
Get: 71 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB]
Get: 72 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB]
Get: 74 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-1+b1 [196 kB]
Get: 77 http://deb.debian.org/debian bookworm/main i386 libparasail8 i386 2.6+dfsg-1 [932 kB]
Get: 78 http://deb.debian.org/debian bookworm/main i386 libparasail-dev i386 2.6+dfsg-1 [687 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 libraqm0 i386 0.7.0-4.1 [11.1 kB]
Get: 80 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB]
Get: 82 http://deb.debian.org/debian bookworm/main i386 libwebpdemux2 i386 1.2.4-0.1 [99.7 kB]
Get: 83 http://deb.debian.org/debian bookworm/main i386 libwebpmux3 i386 1.2.4-0.1 [111 kB]
Get: 84 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 85 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 86 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB]
Get: 87 http://deb.debian.org/debian bookworm/main i386 libyaml-0-2 i386 0.2.5-1 [55.9 kB]
Get: 88 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB]
Get: 89 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 90 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB]
Get: 91 http://deb.debian.org/debian bookworm/main i386 python3-renderpm i386 3.6.12-1+b1 [81.4 kB]
Get: 92 http://deb.debian.org/debian bookworm/main i386 python3-reportlab-accel i386 3.6.12-1+b1 [39.4 kB]
Get: 93 http://deb.debian.org/debian bookworm/main i386 python3-pil i386 9.4.0-1.1+b1 [473 kB]
Get: 94 http://deb.debian.org/debian bookworm/main i386 python3-reportlab all 3.6.12-1 [564 kB]
Get: 95 http://deb.debian.org/debian bookworm/main i386 xml-core all 0.18+nmu1 [23.8 kB]
Get: 96 http://deb.debian.org/debian bookworm/main i386 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 97 http://deb.debian.org/debian bookworm/main i386 python3-biopython i386 1.80+dfsg-4+b1 [1589 kB]
Get: 98 http://deb.debian.org/debian bookworm/main i386 python3-coverage i386 6.5.0+dfsg1-2+b1 [153 kB]
Get: 99 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 100 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB]
Get: 101 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB]
Get: 102 http://deb.debian.org/debian bookworm/main i386 python3-wheel all 0.38.4-2 [30.8 kB]
Get: 103 http://deb.debian.org/debian bookworm/main i386 python3-parasail all 1.3.3-1 [38.6 kB]
Get: 104 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get: 105 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB]
Get: 106 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB]
Get: 107 http://deb.debian.org/debian bookworm/main i386 python3-pytest-cov all 4.0.0-1 [26.1 kB]
Get: 108 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB]
Get: 109 http://deb.debian.org/debian bookworm/main i386 python3-pytest-runner all 2.11.1-4 [8432 B]
Get: 110 http://deb.debian.org/debian bookworm/main i386 python3-six all 1.16.0-4 [17.5 kB]
Get: 111 http://deb.debian.org/debian bookworm/main i386 python3-yaml i386 6.0-3+b2 [119 kB]
Fetched 59.4 MB in 1s (40.5 MB/s)
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Setting up media-types (10.0.0) ...
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Setting up libgraphite2-3:i386 (1.3.14-1) ...
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Setting up libparasail8:i386 (2.6+dfsg-1) ...
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libmagic1:i386 (1:5.44-3) ...
Setting up libdeflate0:i386 (1.14-1) ...
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Setting up libfontenc1:i386 (1:1.1.4-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:i386 (3.11.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up libxcb1:i386 (1.15-1) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-pil:i386 (9.4.0-1.1+b1) ...
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Setting up python3-reportlab-accel:i386 (3.6.12-1+b1) ...
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Setting up python3-lib2to3 (3.11.2-2) ...
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Setting up python3-attr (22.2.0-1) ...
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Setting up python3-py (1.11.0-1) ...
Setting up python3-pytest (7.2.1-2) ...
Setting up python3-coverage (6.5.0+dfsg1-2+b1) ...
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Processing triggers for libc-bin (2.36-9) ...
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Setting up python3-biopython (1.80+dfsg-4+b1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/19927/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
removed '/etc/unsupported-skip-usrmerge-conversion'
The system has been successfully converted.
I: user script /srv/workspace/pbuilder/19927/tmp/hooks/A99_set_merged_usr finished
I: Running cd /build/qcat-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../qcat_1.1.0-6_source.changes
dpkg-buildpackage: info: source package qcat
dpkg-buildpackage: info: source version 1.1.0-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py clean
running clean
removing '/build/qcat-1.1.0/.pybuild/cpython3_3.11/build' (and everything under it)
'build/bdist.linux-i386' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/eval_full.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/scanner_simple.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/adapters.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/config.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/scanner_base.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/scanner_epi2me.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/calibration.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/eval_roc.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/__init__.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/scanner_guppy.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/utils.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/scanner_dual.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/scanner_brill.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/cli.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/scanner.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/layout.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
copying qcat/eval.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat
creating /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources
creating /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB201_5p_a.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/NBD114_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/simple_extended.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RBK001.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB201_5p_c.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/PBC096_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB214_5p_a.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/NBD114_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB214_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/PBC001_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/PBC096_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB201_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/NBD104_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RPB004_RLB001.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/NBD104_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/VMK001.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/DUAL_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RBK004.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/PBC001_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/simple_standard.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/RAB214_5p_c.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
copying qcat/resources/kits/DUAL_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits
dh_auto_test -O--buildsystem=pybuild
I: pybuild pybuild:307: cp -r /build/qcat-1.1.0/qcat/test /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat ;
I: pybuild base:240: cd /build/qcat-1.1.0/.pybuild/cpython3_3.11/build; python3.11 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3.11
cachedir: .pytest_cache
rootdir: /build/qcat-1.1.0, configfile: pytest.ini
plugins: cov-4.0.0
collecting ... collected 14 items
qcat/test/test_barcode.py::test_get_placeholder PASSED [ 7%]
qcat/test/test_barcode.py::test_barcode PASSED [ 14%]
qcat/test/test_barcode.py::test_scanner_find_best_adapter_template PASSED [ 21%]
qcat/test/test_barcode.py::test_barcode_rapidkit PASSED [ 28%]
qcat/test/test_barcode.py::test_scanner_detect_barcode_generic PASSED [ 35%]
qcat/test/test_barcode.py::test_utils PASSED [ 42%]
qcat/test/test_barcode.py::test_scanner_ectract_align_sequence PASSED [ 50%]
qcat/test/test_barcode.py::test_adapter_layout PASSED [ 57%]
qcat/test/test_barcode.py::test_full_run_rad003 PASSED [ 64%]
qcat/test/test_barcode.py::test_full_run_nbd103 PASSED [ 71%]
qcat/test/test_barcode.py::test_full_run_pbk004 PASSED [ 78%]
qcat/test/test_barcode.py::test_full_run_rab204 PASSED [ 85%]
qcat/test/test_barcode.py::test_full_run_rbk004 PASSED [ 92%]
qcat/test/test_barcode.py::test_trimming PASSED [100%]
=============================== warnings summary ===============================
../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1294
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:1294: PytestConfigWarning: Unknown config option: log_print
self._warn_or_fail_if_strict(f"Unknown config option: {key}\n")
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
---------- coverage: platform linux, python 3.11.2-final-0 -----------
Name Stmts Miss Cover Missing
---------------------------------------------------------
qcat/__init__.py 2 0 100%
qcat/adapters.py 102 38 63% 19-24, 28-31, 35-40, 44, 55, 81-83, 104-105, 109-118, 130-132, 134-135, 146-149
qcat/calibration.py 0 0 100%
qcat/cli.py 283 222 22% 21-32, 36-39, 43-48, 62-197, 218-231, 256-257, 276-278, 286-302, 306, 311-324, 330-357, 362-363, 367-373, 377-383, 387-404, 419-435, 470-563, 567-575, 587-634, 639
qcat/config.py 106 32 70% 29, 58-59, 78-79, 98-99, 118, 137, 156, 177, 200, 209-234, 263-275
qcat/eval.py 118 118 0% 1-183
qcat/eval_full.py 132 132 0% 1-241
qcat/eval_roc.py 50 50 0% 1-105
qcat/layout.py 108 25 77% 34, 38, 56, 65, 99, 114, 129, 141-143, 155-166, 188, 206, 213, 230, 238
qcat/scanner.py 45 21 53% 10-11, 40-45, 55-60, 70-75, 94-98, 111
qcat/scanner_base.py 284 111 61% 8-11, 24-26, 107, 123, 165-188, 212, 248-255, 279-285, 339, 344, 456, 464, 477, 481-519, 529, 590-591, 594-595, 607-611, 614-616, 620-630, 634-642, 646-654, 658-660, 664-678, 682-689, 693-704, 707-712, 717-733
qcat/scanner_brill.py 77 77 0% 1-138
qcat/scanner_dual.py 41 31 24% 15-29, 33, 56-146
qcat/scanner_epi2me.py 42 9 79% 17, 92, 107-125
qcat/scanner_guppy.py 56 32 43% 13, 46-77, 87-111, 118-120, 125-131
qcat/scanner_simple.py 28 17 39% 14-31, 35, 38-41, 68-87
qcat/test/__init__.py 0 0 100%
qcat/test/test_barcode.py 273 5 98% 591-597
qcat/utils.py 22 0 100%
---------------------------------------------------------
TOTAL 1769 920 48%
======================== 14 passed, 1 warning in 30.21s ========================
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/qcat-1.1.0/debian/tmp
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running install_lib
creating /build/qcat-1.1.0/debian/tmp/usr
creating /build/qcat-1.1.0/debian/tmp/usr/lib
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval_full.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/test_barcode.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/barcode_1k.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/rbk004.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/nobarcode_1k.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/rab204.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/nbd103.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/pbk004.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__pycache__/__init__.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__pycache__/test_barcode.cpython-311-pytest-7.2.1.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__init__.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_5p_a.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD114_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/simple_extended.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RBK001.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_5p_c.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC096_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_5p_a.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD114_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC001_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC096_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RPB004_RLB001.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/VMK001.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/DUAL_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RBK004.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC001_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/simple_standard.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_5p_c.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/DUAL_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_simple.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_epi2me.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_simple.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/layout.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_dual.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/cli.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_guppy.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/utils.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/calibration.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/__init__.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/adapters.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_base.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/config.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/adapters.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/config.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_base.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_epi2me.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/calibration.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval_roc.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__init__.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_guppy.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/utils.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_dual.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_brill.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/cli.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/layout.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat
copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/.coverage -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval_full.py to eval_full.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/test_barcode.py to test_barcode.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_simple.py to scanner_simple.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/adapters.py to adapters.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/config.py to config.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_base.py to scanner_base.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_epi2me.py to scanner_epi2me.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/calibration.py to calibration.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval_roc.py to eval_roc.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_guppy.py to scanner_guppy.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/utils.py to utils.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_dual.py to scanner_dual.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_brill.py to scanner_brill.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/cli.py to cli.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner.py to scanner.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/layout.py to layout.cpython-311.pyc
byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval.py to eval.cpython-311.pyc
running install_egg_info
running egg_info
creating qcat.egg-info
writing qcat.egg-info/PKG-INFO
writing dependency_links to qcat.egg-info/dependency_links.txt
writing entry points to qcat.egg-info/entry_points.txt
writing requirements to qcat.egg-info/requires.txt
writing top-level names to qcat.egg-info/top_level.txt
writing manifest file 'qcat.egg-info/SOURCES.txt'
reading manifest file 'qcat.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'qcat.egg-info/SOURCES.txt'
Copying qcat.egg-info to /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat-1.1.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing qcat script to /build/qcat-1.1.0/debian/tmp/usr/bin
Installing qcat-eval script to /build/qcat-1.1.0/debian/tmp/usr/bin
Installing qcat-eval-truth script to /build/qcat-1.1.0/debian/tmp/usr/bin
Installing qcat-roc script to /build/qcat-1.1.0/debian/tmp/usr/bin
debian/rules override_dh_install
make[1]: Verzeichnis „/build/qcat-1.1.0“ wird betreten
dh_install
find debian -name .coverage -delete
mkdir -p debian/qcat-examples/usr/share/doc/qcat/examples/qcat
mv debian/qcat/usr/lib/python3*/dist-packages/qcat/test debian/qcat-examples/usr/share/doc/qcat/examples/qcat
find debian -name __pycache__ -type d | xargs rm -rf
make[1]: Verzeichnis „/build/qcat-1.1.0“ wird verlassen
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: Paket »qcat« wird in »../qcat_1.1.0-6_all.deb« gebaut.
dpkg-deb: Paket »qcat-examples« wird in »../qcat-examples_1.1.0-6_all.deb« gebaut.
dpkg-genbuildinfo --build=binary -O../qcat_1.1.0-6_i386.buildinfo
dpkg-genchanges --build=binary -O../qcat_1.1.0-6_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: user script /srv/workspace/pbuilder/19927/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/19927/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/19927 and its subdirectories
I: Current time: Sat Apr 22 05:21:41 +14 2023
I: pbuilder-time-stamp: 1682090501