I: pbuilder: network access will be disabled during build
I: Current time: Wed May 15 06:50:21 -12 2024
I: pbuilder-time-stamp: 1715799021
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [sibelia_3.0.7+dfsg-3.dsc]
I: copying [./sibelia_3.0.7+dfsg.orig.tar.xz]
I: copying [./sibelia_3.0.7+dfsg-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Apr 13 20:37:29 2020 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./sibelia_3.0.7+dfsg-3.dsc: no acceptable signature found
dpkg-source: info: extracting sibelia in sibelia-3.0.7+dfsg
dpkg-source: info: unpacking sibelia_3.0.7+dfsg.orig.tar.xz
dpkg-source: info: unpacking sibelia_3.0.7+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch
dpkg-source: info: applying use_debian_packaged_lagan.patch
dpkg-source: info: applying snpeff_is_removed.patch
dpkg-source: info: applying 2to3.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/72413/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='0d58663e9aa44d579d9e8d1e00683390'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='72413'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b34HbWkk/pbuilderrc_NJUG --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b34HbWkk/b1 --logfile b1/build.log sibelia_3.0.7+dfsg-3.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos6-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux
I: ls -l /bin
total 6040
-rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 20 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 20 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 5 2023 dash
-rwxr-xr-x 1 root root 137160 Sep 20 2022 date
-rwxr-xr-x 1 root root 100364 Sep 20 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 20 2022 df
-rwxr-xr-x 1 root root 162152 Sep 20 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 34664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 218680 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 75756 Sep 20 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 22 2023 login
-rwxr-xr-x 1 root root 162152 Sep 20 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 22 2023 more
-rwsr-xr-x 1 root root 58912 Mar 22 2023 mount
-rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Dec 18 2022 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 20 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 133224 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 20 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 22 2023 su
-rwxr-xr-x 1 root root 38792 Sep 20 2022 sync
-rwxr-xr-x 1 root root 602584 Feb 16 2021 tar
-rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 120776 Sep 20 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 20 2022 true
-rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 22 2023 umount
-rwxr-xr-x 1 root root 38760 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/72413/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), cmake, libdivsufsort-dev, libboost-dev, libseqan2-dev, libtclap-dev, libhts-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however:
Package libdivsufsort-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-dev; however:
Package libboost-dev is not installed.
pbuilder-satisfydepends-dummy depends on libseqan2-dev; however:
Package libseqan2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libtclap-dev; however:
Package libtclap-dev is not installed.
pbuilder-satisfydepends-dummy depends on libhts-dev; however:
Package libhts-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1{a} libsub-override-perl{a} libtclap-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget
0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded.
Need to get 52.3 MB of archives. After unpacking 305 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libarchive13 i386 3.6.2-1 [385 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-7 [419 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 librhash0 i386 1.4.3-3 [149 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 cmake-data all 3.25.1-1 [2026 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 cmake i386 3.25.1-1 [9767 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 43 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-7 [412 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 libcurl4-gnutls-dev i386 7.88.1-7 [526 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 libdeflate-dev i386 1.14-1 [53.5 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 libdivsufsort3 i386 2.0.1-5 [49.5 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 libdivsufsort-dev i386 2.0.1-5 [19.1 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 libhts-dev i386 1.16+ds-3 [1585 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 libseqan2-dev all 2.4.0+dfsg-15 [1215 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 libtclap-dev i386 1.2.5-1+b1 [3360 kB]
Fetched 52.3 MB in 2s (27.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libproc2-0:i386.
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(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_i386.deb ...
Unpacking libproc2-0:i386 (2:4.0.2-3) ...
Selecting previously unselected package procps.
Preparing to unpack .../01-procps_2%3a4.0.2-3_i386.deb ...
Unpacking procps (2:4.0.2-3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_i386.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:i386.
Preparing to unpack .../04-libmagic1_1%3a5.44-3_i386.deb ...
Unpacking libmagic1:i386 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../05-file_1%3a5.44-3_i386.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../06-gettext-base_0.21-12_i386.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../07-libuchardet0_0.0.7-1_i386.deb ...
Unpacking libuchardet0:i386 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../08-groff-base_1.22.4-10_i386.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_i386.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../10-libpipeline1_1.5.7-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../11-man-db_2.11.2-2_i386.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../12-m4_1.4.19-3_i386.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../13-autoconf_2.71-3_all.deb ...
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I: Building the package
I: Running cd /build/sibelia-3.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sibelia_3.0.7+dfsg-3_source.changes
dpkg-buildpackage: info: source package sibelia
dpkg-buildpackage: info: source version 3.0.7+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
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Compatibility with CMake < 2.8.12 will be removed from a future version of
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/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o -MF CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o.d -o CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o -c /build/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp
[ 50%] Building CXX object CMakeFiles/Sibelia.dir/dnasequence.cpp.o
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/blockfinder.cpp.o -MF CMakeFiles/Sibelia.dir/blockfinder.cpp.o.d -o CMakeFiles/Sibelia.dir/blockfinder.cpp.o -c /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp
[ 55%] Building CXX object CMakeFiles/Sibelia.dir/edge.cpp.o
[ 60%] Building CXX object CMakeFiles/Sibelia.dir/fasta.cpp.o
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/dnasequence.cpp.o -MF CMakeFiles/Sibelia.dir/dnasequence.cpp.o.d -o CMakeFiles/Sibelia.dir/dnasequence.cpp.o -c /build/sibelia-3.0.7+dfsg/src/dnasequence.cpp
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/edge.cpp.o -MF CMakeFiles/Sibelia.dir/edge.cpp.o.d -o CMakeFiles/Sibelia.dir/edge.cpp.o -c /build/sibelia-3.0.7+dfsg/src/edge.cpp
[ 65%] Building CXX object CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o
[ 75%] Building CXX object CMakeFiles/Sibelia.dir/serialization.cpp.o
[ 75%] Building CXX object CMakeFiles/Sibelia.dir/synteny.cpp.o
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/fasta.cpp.o -MF CMakeFiles/Sibelia.dir/fasta.cpp.o.d -o CMakeFiles/Sibelia.dir/fasta.cpp.o -c /build/sibelia-3.0.7+dfsg/src/fasta.cpp
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/serialization.cpp.o -MF CMakeFiles/Sibelia.dir/serialization.cpp.o.d -o CMakeFiles/Sibelia.dir/serialization.cpp.o -c /build/sibelia-3.0.7+dfsg/src/serialization.cpp
[ 80%] Building CXX object CMakeFiles/Sibelia.dir/platform.cpp.o
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/synteny.cpp.o -MF CMakeFiles/Sibelia.dir/synteny.cpp.o.d -o CMakeFiles/Sibelia.dir/synteny.cpp.o -c /build/sibelia-3.0.7+dfsg/src/synteny.cpp
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o -MF CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o.d -o CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o -c /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/platform.cpp.o -MF CMakeFiles/Sibelia.dir/platform.cpp.o.d -o CMakeFiles/Sibelia.dir/platform.cpp.o -c /build/sibelia-3.0.7+dfsg/src/platform.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/fasta.h:10,
from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
from /build/sibelia-3.0.7+dfsg/src/bifurcationstorage.h:11,
from /build/sibelia-3.0.7+dfsg/src/bifurcationstorage.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/platform.h:10,
from /build/sibelia-3.0.7+dfsg/src/platform.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
from /build/sibelia-3.0.7+dfsg/src/edge.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/fasta.h:10,
from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
from /build/sibelia-3.0.7+dfsg/src/hashing.h:10,
from /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:10,
from /build/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
from /build/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
from /build/sibelia-3.0.7+dfsg/src/synteny.cpp:9:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
from /build/sibelia-3.0.7+dfsg/src/util.h:10,
from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10,
from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/test/../common.h:31,
from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.h:10,
from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
from /build/sibelia-3.0.7+dfsg/src/util.h:10,
from /build/sibelia-3.0.7+dfsg/src/util.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
from /build/sibelia-3.0.7+dfsg/src/serialization.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/fasta.h:10,
from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
from /build/sibelia-3.0.7+dfsg/src/dnasequence.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 85%] Building CXX object CMakeFiles/Sibelia.dir/stranditerator.cpp.o
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/stranditerator.cpp.o -MF CMakeFiles/Sibelia.dir/stranditerator.cpp.o.d -o CMakeFiles/Sibelia.dir/stranditerator.cpp.o -c /build/sibelia-3.0.7+dfsg/src/stranditerator.cpp
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/test/../common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/test/../common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.h:11:
/build/sibelia-3.0.7+dfsg/src/test/../unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/fasta.h:10,
from /build/sibelia-3.0.7+dfsg/src/fasta.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 90%] Building CXX object CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o -MF CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o.d -o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o -c /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp
[ 95%] Building CXX object CMakeFiles/Sibelia.dir/resource.cpp.o
/usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/resource.cpp.o -MF CMakeFiles/Sibelia.dir/resource.cpp.o.d -o CMakeFiles/Sibelia.dir/resource.cpp.o -c /build/sibelia-3.0.7+dfsg/src/resource.cpp
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/fasta.h:10,
from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
from /build/sibelia-3.0.7+dfsg/src/stranditerator.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/fasta.h:10,
from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
from /build/sibelia-3.0.7+dfsg/src/hashing.h:10,
from /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:10,
from /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/resource.h:6,
from /build/sibelia-3.0.7+dfsg/src/resource.cpp:6:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/fasta.h:10,
from /build/sibelia-3.0.7+dfsg/src/postprocessor.h:13,
from /build/sibelia-3.0.7+dfsg/src/postprocessor.cpp:9:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /build/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /build/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /build/sibelia-3.0.7+dfsg/src/common.h:31,
from /build/sibelia-3.0.7+dfsg/src/fasta.h:10,
from /build/sibelia-3.0.7+dfsg/src/postprocessor.h:13,
from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:8:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algobase.h:65,
from /usr/include/c++/12/algorithm:60,
from /usr/include/seqan/align.h:53,
from /build/sibelia-3.0.7+dfsg/src/postprocessor.h:10:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11,
from /build/sibelia-3.0.7+dfsg/src/postprocessor.h:14:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
104 | struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
| ^~~~~~~~
In file included from /usr/include/c++/12/string:45,
from /usr/include/tclap/SwitchArg.h:29,
from /usr/include/tclap/CmdLine.h:27,
from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:7:
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:11,
from /build/sibelia-3.0.7+dfsg/src/postprocessor.h:14:
/build/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
36 | class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
51 | class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
| ^~~~~~~~
/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11,
from /build/sibelia-3.0.7+dfsg/src/util.h:10,
from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:9:
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
37 | std::auto_ptr<DNASequence> sequence_;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from /usr/include/seqan/basic/test_system.h:53,
from /usr/include/seqan/basic.h:65,
from /usr/include/seqan/align.h:55,
from /build/sibelia-3.0.7+dfsg/src/postprocessor.h:10:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
38 | std::auto_ptr<BifurcationStorage> bifStorage_;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/sibelia.cpp: In function ‘int main(int, char**)’:
/build/sibelia-3.0.7+dfsg/src/sibelia.cpp:239:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
239 | std::auto_ptr<SyntenyFinder::BlockFinder> finder(inRAM.isSet() ? new SyntenyFinder::BlockFinder(chrList) : new SyntenyFinder::BlockFinder(chrList, tempDir));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/sibelia-3.0.7+dfsg/src/resource.cpp: In function ‘void __static_initialization_and_destruction_0(int, int)’:
/build/sibelia-3.0.7+dfsg/src/resource.cpp:7108:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
7108 | }
| ^
[100%] Linking CXX executable Sibelia
/usr/bin/cmake -E cmake_link_script CMakeFiles/Sibelia.dir/link.txt --verbose=1
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-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/README.txt
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/d3_blocks_diagram.html
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.segdup.txt
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.png
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.sequences.txt
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.image.conf
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.svg
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.highlight.txt
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.conf
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/genomes_permutations.txt
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/coverage_report.txt
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/blocks_coords.txt
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/Staphylococcus.fasta
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/README.txt
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/d3_blocks_diagram.html
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/bin/C-Sibelia.py
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils/hidemappedcontigs.py
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils/sortsequences.py
-- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/lib/Sibelia
make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-i686-linux-gnu'
debian/rules override_dh_install
make[1]: Entering directory '/build/sibelia-3.0.7+dfsg'
dh_install
find debian -name LICENSE.txt -delete
find debian -name INSTALL.md -delete
make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg'
dh_installdocs -O--sourcedirectory=src
dh_installchangelogs -O--sourcedirectory=src
debian/rules override_dh_installman-arch
make[1]: Entering directory '/build/sibelia-3.0.7+dfsg'
dh_installman -a
mv debian/sibelia/usr/share/man/py/man1/C-Sibelia.1 debian/sibelia/usr/share/man/man1/C-Sibelia.py.1
rm -rf debian/sibelia/usr/share/man/py
make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg'
dh_installman -O--sourcedirectory=src -Nsibelia
dh_installinit -O--sourcedirectory=src
dh_installsystemduser -O--sourcedirectory=src
dh_lintian -O--sourcedirectory=src
dh_perl -O--sourcedirectory=src
dh_link -O--sourcedirectory=src
dh_strip_nondeterminism -O--sourcedirectory=src
dh_compress -O--sourcedirectory=src
dh_fixperms -O--sourcedirectory=src
dh_missing -O--sourcedirectory=src
dh_dwz -O--sourcedirectory=src
dh_strip -O--sourcedirectory=src
dh_makeshlibs -O--sourcedirectory=src
dh_shlibdeps -O--sourcedirectory=src
dh_installdeb -O--sourcedirectory=src
dh_gencontrol -O--sourcedirectory=src
dh_md5sums -O--sourcedirectory=src
dh_builddeb -O--sourcedirectory=src
dpkg-deb: building package 'sibelia' in '../sibelia_3.0.7+dfsg-3_i386.deb'.
dpkg-deb: building package 'sibelia-dbgsym' in '../sibelia-dbgsym_3.0.7+dfsg-3_i386.deb'.
dpkg-deb: building package 'sibelia-examples' in '../sibelia-examples_3.0.7+dfsg-3_all.deb'.
dpkg-genbuildinfo --build=binary -O../sibelia_3.0.7+dfsg-3_i386.buildinfo
dpkg-genchanges --build=binary -O../sibelia_3.0.7+dfsg-3_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/72413 and its subdirectories
I: Current time: Wed May 15 06:51:52 -12 2024
I: pbuilder-time-stamp: 1715799112