I: pbuilder: network access will be disabled during build I: Current time: Mon Jul 1 05:31:11 +14 2024 I: pbuilder-time-stamp: 1719761471 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biobambam2_2.0.179+ds-1.dsc] I: copying [./biobambam2_2.0.179+ds.orig.tar.xz] I: copying [./biobambam2_2.0.179+ds-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.5JkhYjIc/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 4 00:19:42 2021 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biobambam2_2.0.179+ds-1.dsc dpkg-source: info: extracting biobambam2 in biobambam2-2.0.179+ds dpkg-source: info: unpacking biobambam2_2.0.179+ds.orig.tar.xz dpkg-source: info: unpacking biobambam2_2.0.179+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying manuals.patch dpkg-source: info: applying spelling-error-in-binary.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/748683/tmp/hooks/D01_modify_environment starting debug: Running on infom01-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 1 05:31 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/748683/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/748683/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DIRSTACK=() DISTRIBUTION=bullseye EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=984bc89c2132477b932946f8c3c3f9b3 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=748683 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nuRBzbmr/pbuilderrc_gwIr --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nuRBzbmr/b2 --logfile b2/build.log biobambam2_2.0.179+ds-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.1.0-22-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.94-1 (2024-06-21) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Mar 29 00:09 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 69032 Mar 29 00:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Mar 29 00:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Mar 29 00:09 more -rwsr-xr-x 1 root root 55528 Mar 29 00:09 mount -rwxr-xr-x 1 root root 18664 Mar 29 00:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 9 Jul 1 05:31 sh -> /bin/bash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Mar 29 00:09 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Jan 20 23:59 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Mar 29 00:09 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Mar 29 00:09 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/748683/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libmaus2-dev; however: Package libmaus2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libassuan0{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgpgme11{a} libicu67{a} libksba8{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmaus2-2{a} libmaus2-dev{a} libnpth0{a} libpipeline1{a} libreadline8{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pinentry-curses{a} pkg-config{a} po-debconf{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 33.7 MB of archives. After unpacking 135 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u2 [146 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 gpgconf amd64 2.2.27-2+deb11u2 [548 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libksba8 amd64 1.5.0-3+deb11u2 [123 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libnpth0 amd64 1.6-3 [19.0 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 dirmngr amd64 2.2.27-2+deb11u2 [763 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 gnupg-l10n all 2.2.27-2+deb11u2 [1086 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 gnupg-utils amd64 2.2.27-2+deb11u2 [905 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 gpg amd64 2.2.27-2+deb11u2 [928 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 pinentry-curses amd64 1.1.0-4 [64.9 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 gpg-agent amd64 2.2.27-2+deb11u2 [669 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-client amd64 2.2.27-2+deb11u2 [524 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-server amd64 2.2.27-2+deb11u2 [516 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 gpgsm amd64 2.2.27-2+deb11u2 [645 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 gnupg all 2.2.27-2+deb11u2 [825 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u4 [1377 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libgpgme11 amd64 1.14.0-1+b2 [281 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libmaus2-2 amd64 2.0.768+dfsg-2 [1607 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libmaus2-dev amd64 2.0.768+dfsg-2 [3500 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Fetched 33.7 MB in 1s (29.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8+deb11u2_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../06-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../09-libmagic1_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../12-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../22-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../25-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../27-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../28-libxml2_2.9.10+dfsg-6.7+deb11u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../33-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../34-gpgconf_2.2.27-2+deb11u2_amd64.deb ... Unpacking gpgconf (2.2.27-2+deb11u2) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../35-libksba8_1.5.0-3+deb11u2_amd64.deb ... Unpacking libksba8:amd64 (1.5.0-3+deb11u2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../36-libsasl2-modules-db_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../37-libsasl2-2_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../38-libldap-2.4-2_2.4.57+dfsg-3+deb11u1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../39-libnpth0_1.6-3_amd64.deb ... Unpacking libnpth0:amd64 (1.6-3) ... Selecting previously unselected package dirmngr. Preparing to unpack .../40-dirmngr_2.2.27-2+deb11u2_amd64.deb ... Unpacking dirmngr (2.2.27-2+deb11u2) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../41-gnupg-l10n_2.2.27-2+deb11u2_all.deb ... Unpacking gnupg-l10n (2.2.27-2+deb11u2) ... Selecting previously unselected package gnupg-utils. Preparing to unpack .../42-gnupg-utils_2.2.27-2+deb11u2_amd64.deb ... Unpacking gnupg-utils (2.2.27-2+deb11u2) ... Selecting previously unselected package gpg. Preparing to unpack .../43-gpg_2.2.27-2+deb11u2_amd64.deb ... Unpacking gpg (2.2.27-2+deb11u2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../44-pinentry-curses_1.1.0-4_amd64.deb ... Unpacking pinentry-curses (1.1.0-4) ... Selecting previously unselected package gpg-agent. Preparing to unpack .../45-gpg-agent_2.2.27-2+deb11u2_amd64.deb ... Unpacking gpg-agent (2.2.27-2+deb11u2) ... Selecting previously unselected package gpg-wks-client. Preparing to unpack .../46-gpg-wks-client_2.2.27-2+deb11u2_amd64.deb ... Unpacking gpg-wks-client (2.2.27-2+deb11u2) ... Selecting previously unselected package gpg-wks-server. Preparing to unpack .../47-gpg-wks-server_2.2.27-2+deb11u2_amd64.deb ... Unpacking gpg-wks-server (2.2.27-2+deb11u2) ... Selecting previously unselected package gpgsm. Preparing to unpack .../48-gpgsm_2.2.27-2+deb11u2_amd64.deb ... Unpacking gpgsm (2.2.27-2+deb11u2) ... Selecting previously unselected package gnupg. Preparing to unpack .../49-gnupg_2.2.27-2+deb11u2_all.deb ... Unpacking gnupg (2.2.27-2+deb11u2) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../50-libglib2.0-0_2.66.8-1+deb11u4_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... Selecting previously unselected package libgpgme11:amd64. Preparing to unpack .../51-libgpgme11_1.14.0-1+b2_amd64.deb ... Unpacking libgpgme11:amd64 (1.14.0-1+b2) ... Selecting previously unselected package libmaus2-2. Preparing to unpack .../52-libmaus2-2_2.0.768+dfsg-2_amd64.deb ... Unpacking libmaus2-2 (2.0.768+dfsg-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../53-zlib1g-dev_1%3a1.2.11.dfsg-2+deb11u2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Selecting previously unselected package libmaus2-dev. Preparing to unpack .../54-libmaus2-dev_2.0.768+dfsg-2_amd64.deb ... Unpacking libmaus2-dev (2.0.768+dfsg-2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../55-pkg-config_0.29.2-1_amd64.deb ... Unpacking pkg-config (0.29.2-1) ... Setting up libksba8:amd64 (1.5.0-3+deb11u2) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8+deb11u2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3+deb11u1) ... Setting up gettext-base (0.21-4) ... Setting up libnpth0:amd64 (1.6-3) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libassuan0:amd64 (2.5.3-7.1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up gnupg-l10n (2.2.27-2+deb11u2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up gpgconf (2.2.27-2+deb11u2) ... Setting up gpg (2.2.27-2+deb11u2) ... Setting up gnupg-utils (2.2.27-2+deb11u2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gpg-agent (2.2.27-2+deb11u2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up gpgsm (2.2.27-2+deb11u2) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libgpgme11:amd64 (1.14.0-1+b2) ... Setting up dh-autoreconf (20) ... Setting up dirmngr (2.2.27-2+deb11u2) ... Setting up gpg-wks-server (2.2.27-2+deb11u2) ... Setting up gpg-wks-client (2.2.27-2+deb11u2) ... Setting up libmaus2-2 (2.0.768+dfsg-2) ... Setting up debhelper (13.3.4) ... Setting up gnupg (2.2.27-2+deb11u2) ... Setting up libmaus2-dev (2.0.768+dfsg-2) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/748683/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for bullseye I: user script /srv/workspace/pbuilder/748683/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/biobambam2-2.0.179+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biobambam2_2.0.179+ds-1_source.changes dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.179+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' dh_auto_clean rm -f config.log make[1]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:3: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... none checking whether we are cross compiling... no checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options -O3 to C compiler gcc flags, full list now -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 configure: Adding optimisation options -O3 to C++ compiler g++ flags, full list now -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for ANSI C header files... (cached) yes checking for libmaus2 >= 2.0.767... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking whether libmaus2 has support for iRODS... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for xerces-c >= 3.1.1... no configure: Using flags -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 for C compiler gcc configure: Using flags -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 for C++ compiler g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' make all-recursive make[2]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' Making all in src make[3]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/src' g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bammaskflags-bammaskflags.o `test -f 'programs/bammaskflags.cpp' || echo './'`programs/bammaskflags.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bammaskflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamrecompress-bamrecompress.o `test -f 'programs/bamrecompress.cpp' || echo './'`programs/bamrecompress.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamrecompress-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamadapterfind-bamadapterfind.o `test -f 'programs/bamadapterfind.cpp' || echo './'`programs/bamadapterfind.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamadapterfind-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamadapterfind-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamadapterfind-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilteraux-bamfilteraux.o `test -f 'programs/bamfilteraux.cpp' || echo './'`programs/bamfilteraux.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilteraux-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamauxsort-bamauxsort.o `test -f 'programs/bamauxsort.cpp' || echo './'`programs/bamauxsort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamauxsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamadapterclip-bamadapterclip.o `test -f 'programs/bamadapterclip.cpp' || echo './'`programs/bamadapterclip.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamadapterclip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamadapterclip-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamcollate2-bamcollate2.o `test -f 'programs/bamcollate2.cpp' || echo './'`programs/bamcollate2.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamcollate2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamcollate2-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamcollate2-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bam12auxmerge-bam12auxmerge.o `test -f 'programs/bam12auxmerge.cpp' || echo './'`programs/bam12auxmerge.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12auxmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12auxmerge-Split12.o `test -f 'biobambam2/Split12.cpp' || echo './'`biobambam2/Split12.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12auxmerge-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12auxmerge-ClipReinsert.o `test -f 'biobambam2/ClipReinsert.cpp' || echo './'`biobambam2/ClipReinsert.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12auxmerge-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bam12split-bam12split.o `test -f 'programs/bam12split.cpp' || echo './'`programs/bam12split.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12split-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12split-Split12.o `test -f 'biobambam2/Split12.cpp' || echo './'`biobambam2/Split12.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bam12strip-bam12strip.o `test -f 'programs/bam12strip.cpp' || echo './'`programs/bam12strip.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12strip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bam12strip-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamreset-bamreset.o `test -f 'programs/bamreset.cpp' || echo './'`programs/bamreset.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreset-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreset-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamrank-bamrank.o `test -f 'programs/bamrank.cpp' || echo './'`programs/bamrank.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamrank-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamrank-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamclipreinsert-bamclipreinsert.o `test -f 'programs/bamclipreinsert.cpp' || echo './'`programs/bamclipreinsert.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamclipreinsert-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamclipreinsert-ClipReinsert.o `test -f 'biobambam2/ClipReinsert.cpp' || echo './'`biobambam2/ClipReinsert.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamclipXT-bamclipXT.o `test -f 'programs/bamclipXT.cpp' || echo './'`programs/bamclipXT.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamclipXT-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamzztoname-bamzztoname.o `test -f 'programs/bamzztoname.cpp' || echo './'`programs/bamzztoname.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamzztoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamzztoname-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamindex-bamindex.o `test -f 'programs/bamindex.cpp' || echo './'`programs/bamindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilterflags-bamfilterflags.o `test -f 'programs/bamfilterflags.cpp' || echo './'`programs/bamfilterflags.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilterrg-bamfilterrg.o `test -f 'programs/bamfilterrg.cpp' || echo './'`programs/bamfilterrg.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterrg-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamdownsamplerandom-bamdownsamplerandom.o `test -f 'programs/bamdownsamplerandom.cpp' || echo './'`programs/bamdownsamplerandom.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamdownsamplerandom-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bammarkduplicates2-bammarkduplicates2.o `test -f 'programs/bammarkduplicates2.cpp' || echo './'`programs/bammarkduplicates2.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bammarkduplicates2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamcat-bamcat.o `test -f 'programs/bamcat.cpp' || echo './'`programs/bamcat.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bammerge-bammerge.o `test -f 'programs/bammerge.cpp' || echo './'`programs/bammerge.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bammerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamsplit-bamsplit.o `test -f 'programs/bamsplit.cpp' || echo './'`programs/bamsplit.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfastsplit-bamfastsplit.o `test -f 'programs/bamfastsplit.cpp' || echo './'`programs/bamfastsplit.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfastsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamsplitdiv-bamsplitdiv.o `test -f 'programs/bamsplitdiv.cpp' || echo './'`programs/bamsplitdiv.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamsplitdiv-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamchecksort-bamchecksort.o `test -f 'programs/bamchecksort.cpp' || echo './'`programs/bamchecksort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamchecksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/fastqtobam-fastqtobam.o `test -f 'programs/fastqtobam.cpp' || echo './'`programs/fastqtobam.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/fastqtobam-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfixmateinformation-bamfixmateinformation.o `test -f 'programs/bamfixmateinformation.cpp' || echo './'`programs/bamfixmateinformation.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfixmateinformation-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamseqchksum-bamseqchksum.o `test -f 'programs/bamseqchksum.cpp' || echo './'`programs/bamseqchksum.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamseqchksum-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/normalisefasta-normalisefasta.o `test -f 'programs/normalisefasta.cpp' || echo './'`programs/normalisefasta.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/normalisefasta-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilterheader-bamfilterheader.o `test -f 'programs/bamfilterheader.cpp' || echo './'`programs/bamfilterheader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilterheader2-bamfilterheader2.o `test -f 'programs/bamfilterheader2.cpp' || echo './'`programs/bamfilterheader2.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterheader2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bammdnm-bammdnm.o `test -f 'programs/bammdnm.cpp' || echo './'`programs/bammdnm.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bammdnm-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bammapdist-bammapdist.o `test -f 'programs/bammapdist.cpp' || echo './'`programs/bammapdist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bammapdist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamvalidate-bamvalidate.o `test -f 'programs/bamvalidate.cpp' || echo './'`programs/bamvalidate.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamvalidate-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamflagsplit-bamflagsplit.o `test -f 'programs/bamflagsplit.cpp' || echo './'`programs/bamflagsplit.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamflagsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamintervalcomment-bamintervalcomment.o `test -f 'programs/bamintervalcomment.cpp' || echo './'`programs/bamintervalcomment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamintervalcomment-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamintervalcommenthist-bamintervalcommenthist.o `test -f 'programs/bamintervalcommenthist.cpp' || echo './'`programs/bamintervalcommenthist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamintervalcommenthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o `test -f 'programs/bamstreamingmarkduplicates.cpp' || echo './'`programs/bamstreamingmarkduplicates.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamstreamingmarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamalignfrac-bamalignfrac.o `test -f 'programs/bamalignfrac.cpp' || echo './'`programs/bamalignfrac.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamalignfrac-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilternames-bamfilternames.o `test -f 'programs/bamfilternames.cpp' || echo './'`programs/bamfilternames.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilternames-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamsormadup-bamsormadup.o `test -f 'programs/bamsormadup.cpp' || echo './'`programs/bamsormadup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamsormadup-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamexplode-bamexplode.o `test -f 'programs/bamexplode.cpp' || echo './'`programs/bamexplode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamexplode-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamexploderef-bamexploderef.o `test -f 'programs/bamexploderef.cpp' || echo './'`programs/bamexploderef.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamexploderef-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfastexploderef-bamfastexploderef.o `test -f 'programs/bamfastexploderef.cpp' || echo './'`programs/bamfastexploderef.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfastexploderef-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfastnumextract-bamfastnumextract.o `test -f 'programs/bamfastnumextract.cpp' || echo './'`programs/bamfastnumextract.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfastnumextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamranksort-bamranksort.o `test -f 'programs/bamranksort.cpp' || echo './'`programs/bamranksort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamranksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/fastaexplod-fastaexplod.o `test -f 'programs/fastaexplod.cpp' || echo './'`programs/fastaexplod.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/fastaexplod-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamrecalculatecigar-bamrecalculatecigar.o `test -f 'programs/bamrecalculatecigar.cpp' || echo './'`programs/bamrecalculatecigar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamrecalculatecigar-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfiltermc-bamfiltermc.o `test -f 'programs/bamfiltermc.cpp' || echo './'`programs/bamfiltermc.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfiltermc-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamnumericalindex-bamnumericalindex.o `test -f 'programs/bamnumericalindex.cpp' || echo './'`programs/bamnumericalindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamnumericalindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamnumericalindexstats-bamnumericalindexstats.o `test -f 'programs/bamnumericalindexstats.cpp' || echo './'`programs/bamnumericalindexstats.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamnumericalindexstats-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bammarkduplicatesopt-bammarkduplicatesopt.o `test -f 'programs/bammarkduplicatesopt.cpp' || echo './'`programs/bammarkduplicatesopt.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bammarkduplicatesopt-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilterlength-bamfilterlength.o `test -f 'programs/bamfilterlength.cpp' || echo './'`programs/bamfilterlength.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterlength-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamauxmerge-bamauxmerge.o `test -f 'programs/bamauxmerge.cpp' || echo './'`programs/bamauxmerge.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamauxmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamrefinterval-bamrefinterval.o `test -f 'programs/bamrefinterval.cpp' || echo './'`programs/bamrefinterval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamrefinterval-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamscrapcount-bamscrapcount.o `test -f 'programs/bamscrapcount.cpp' || echo './'`programs/bamscrapcount.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamscrapcount-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilterrefid-bamfilterrefid.o `test -f 'programs/bamfilterrefid.cpp' || echo './'`programs/bamfilterrefid.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterrefid-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfillquery-bamfillquery.o `test -f 'programs/bamfillquery.cpp' || echo './'`programs/bamfillquery.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfillquery-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfillquery-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamrefextract-bamrefextract.o `test -f 'programs/bamrefextract.cpp' || echo './'`programs/bamrefextract.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamrefextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/fastqtobam2-fastqtobam2.o `test -f 'programs/fastqtobam2.cpp' || echo './'`programs/fastqtobam2.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/fastqtobam2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/fastqtobam2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/fastqtobam2-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamauxmerge2-bamauxmerge2.o `test -f 'programs/bamauxmerge2.cpp' || echo './'`programs/bamauxmerge2.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamauxmerge2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamauxmerge2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamreheader-bamreheader.o `test -f 'programs/bamreheader.cpp' || echo './'`programs/bamreheader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreheader-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreheader-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreheader-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamreplacechecksums-bamreplacechecksums.o `test -f 'programs/bamreplacechecksums.cpp' || echo './'`programs/bamreplacechecksums.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreplacechecksums-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreplacechecksums-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreplacechecksums-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfastcat-bamfastcat.o `test -f 'programs/bamfastcat.cpp' || echo './'`programs/bamfastcat.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfastcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfastcat-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp programs/bamrefextract.cpp: In function 'void handle(libmaus2::sorting::SerialisingSortingBufferedOutputFile::unique_ptr_type&, int64_t, const libmaus2::bambam::BamHeader&)': programs/bamrefextract.cpp:106:28: warning: 'GP.libmaus2::aio::GenericPeeker > >::slot.Element::p' may be used uninitialized in this function [-Wmaybe-uninitialized] 106 | while ( GP.peekNext(EL) && EL.p == p ) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfastcat-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/populaterefcache-populaterefcache.o `test -f 'programs/populaterefcache.cpp' || echo './'`programs/populaterefcache.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/populaterefcache-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfiltereofblocks-bamfiltereofblocks.o `test -f 'programs/bamfiltereofblocks.cpp' || echo './'`programs/bamfiltereofblocks.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfiltereofblocks-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfiltereofblocks-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamdepth-bamdepth.o `test -f 'programs/bamdepth.cpp' || echo './'`programs/bamdepth.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamdepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamdepth-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamdepthintersect-bamdepthintersect.o `test -f 'programs/bamdepthintersect.cpp' || echo './'`programs/bamdepthintersect.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamdepthintersect-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamdepthintersect-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilterk-bamfilterk.o `test -f 'programs/bamfilterk.cpp' || echo './'`programs/bamfilterk.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterk-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterk-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterk-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfixpairinfo-bamfixpairinfo.o `test -f 'programs/bamfixpairinfo.cpp' || echo './'`programs/bamfixpairinfo.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfixpairinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfixpairinfo-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfixpairinfo-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamdifference-bamdifference.o `test -f 'programs/bamdifference.cpp' || echo './'`programs/bamdifference.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamdifference-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfeaturecount-bamfeaturecount.o `test -f 'programs/bamfeaturecount.cpp' || echo './'`programs/bamfeaturecount.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfeaturecount-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilter-bamfilter.o `test -f 'programs/bamfilter.cpp' || echo './'`programs/bamfilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilter-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfilterbyname-bamfilterbyname.o `test -f 'programs/bamfilterbyname.cpp' || echo './'`programs/bamfilterbyname.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfilterbyname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfixmatecoordinates-bamfixmatecoordinates.o `test -f 'programs/bamfixmatecoordinates.cpp' || echo './'`programs/bamfixmatecoordinates.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfixmatecoordinates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o `test -f 'programs/bamfixmatecoordinatesnamesorted.cpp' || echo './'`programs/bamfixmatecoordinatesnamesorted.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamtoname-bamtoname.o `test -f 'programs/bamtoname.cpp' || echo './'`programs/bamtoname.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamtoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamdisthist-bamdisthist.o `test -f 'programs/bamdisthist.cpp' || echo './'`programs/bamdisthist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamdisthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/fastabgzfextract-fastabgzfextract.o `test -f 'programs/fastabgzfextract.cpp' || echo './'`programs/fastabgzfextract.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/fastabgzfextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamheap-bamheap.o `test -f 'programs/bamheap.cpp' || echo './'`programs/bamheap.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamheap-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamfrontback-bamfrontback.o `test -f 'programs/bamfrontback.cpp' || echo './'`programs/bamfrontback.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfrontback-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamfrontback-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamrandomtag-bamrandomtag.o `test -f 'programs/bamrandomtag.cpp' || echo './'`programs/bamrandomtag.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamrandomtag-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamheap2-bamheap2.o `test -f 'programs/bamheap2.cpp' || echo './'`programs/bamheap2.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamheap2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamheap3-bamheap3.o `test -f 'programs/bamheap3.cpp' || echo './'`programs/bamheap3.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamheap3-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamtagconversion-bamtagconversion.o `test -f 'programs/bamtagconversion.cpp' || echo './'`programs/bamtagconversion.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamtagconversion-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/fastqtobampar-fastqtobampar.o `test -f 'programs/fastqtobampar.cpp' || echo './'`programs/fastqtobampar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/fastqtobampar-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bambisect-bambisect.o `test -f 'programs/bambisect.cpp' || echo './'`programs/bambisect.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bambisect-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcffilterinfo-vcffilterinfo.o `test -f 'programs/vcffilterinfo.cpp' || echo './'`programs/vcffilterinfo.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcffilterinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o `test -f 'programs/vcfpatchcontigprepend.cpp' || echo './'`programs/vcfpatchcontigprepend.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcfpatchcontigprepend-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcfconcat-vcfconcat.o `test -f 'programs/vcfconcat.cpp' || echo './'`programs/vcfconcat.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcfconcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcfsort-vcfsort.o `test -f 'programs/vcfsort.cpp' || echo './'`programs/vcfsort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcfsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/filtergtf-filtergtf.o `test -f 'programs/filtergtf.cpp' || echo './'`programs/filtergtf.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/filtergtf-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamconsensus-bamconsensus.o `test -f 'programs/bamconsensus.cpp' || echo './'`programs/bamconsensus.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamconsensus-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcfreplacecontigs-vcfreplacecontigs.o `test -f 'programs/vcfreplacecontigs.cpp' || echo './'`programs/vcfreplacecontigs.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcfreplacecontigs-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcffiltersamples-vcffiltersamples.o `test -f 'programs/vcffiltersamples.cpp' || echo './'`programs/vcffiltersamples.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcffiltersamples-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamexploderg-bamexploderg.o `test -f 'programs/bamexploderg.cpp' || echo './'`programs/bamexploderg.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamexploderg-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamexondepth-bamexondepth.o `test -f 'programs/bamexondepth.cpp' || echo './'`programs/bamexondepth.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamexondepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamexondepth-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamheadercat-bamheadercat.o `test -f 'programs/bamheadercat.cpp' || echo './'`programs/bamheadercat.cpp In file included from programs/bamexondepth.cpp:22: ./biobambam2/DepthIntervalGetter.hpp: In member function 'uint64_t biobambam2::DepthIntervalGetterMerge::getNext(uint64_t&, uint64_t&, libmaus2::autoarray::AutoArray >&)': ./biobambam2/DepthIntervalGetter.hpp:210:25: warning: unused variable 'HE' [-Wunused-variable] 210 | HeapElement const & HE = H.top(); | ^~ In file included from /usr/include/c++/10/cassert:44, from /usr/include/libmaus2/avl/AVLSet.hpp:24, from programs/bamexondepth.cpp:43: programs/bamexondepth.cpp: In function 'void handleFile(const string&, uint64_t, const libmaus2::bambam::BamHeader&, std::ostream&, std::ostream&, const string&)': programs/bamexondepth.cpp:121:16: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'long int' [-Wsign-compare] 121 | assert ( p < GC.e-GC.a ); | ~~^~~~~~~~~~~ programs/bamexondepth.cpp:371:11: warning: comparison of integer expressions of different signedness: 'const uint64_t' {aka 'const long unsigned int'} and 'int64_t' {aka 'long int'} [-Wsign-compare] 371 | if ( d <= thresdepth ) | ~~^~~~~~~~~~~~~ In file included from /usr/include/c++/10/cassert:44, from /usr/include/libmaus2/avl/AVLSet.hpp:24, from programs/bamexondepth.cpp:43: programs/bamexondepth.cpp:375:17: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'long int' [-Wsign-compare] 375 | assert ( p < GC.e-GC.a ); | ~~^~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamheadercat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bammarkduplicatesoptdist-bammarkduplicatesoptdist.o `test -f 'programs/bammarkduplicatesoptdist.cpp' || echo './'`programs/bammarkduplicatesoptdist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bammarkduplicatesoptdist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcfdiff-vcfdiff.o `test -f 'programs/vcfdiff.cpp' || echo './'`programs/vcfdiff.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcfdiff-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamsimpledepth-bamsimpledepth.o `test -f 'programs/bamsimpledepth.cpp' || echo './'`programs/bamsimpledepth.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamsimpledepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamsimpledepth-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamdepthmerge-bamdepthmerge.o `test -f 'programs/bamdepthmerge.cpp' || echo './'`programs/bamdepthmerge.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamdepthmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp In file included from programs/bamdepthmerge.cpp:23: ./biobambam2/DepthIntervalGetter.hpp: In member function 'uint64_t biobambam2::DepthIntervalGetterMerge::getNext(uint64_t&, uint64_t&, libmaus2::autoarray::AutoArray >&)': ./biobambam2/DepthIntervalGetter.hpp:210:25: warning: unused variable 'HE' [-Wunused-variable] 210 | HeapElement const & HE = H.top(); | ^~ g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamcountflags-bamcountflags.o `test -f 'programs/bamcountflags.cpp' || echo './'`programs/bamcountflags.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamcountflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcffilterfilterflags-vcffilterfilterflags.o `test -f 'programs/vcffilterfilterflags.cpp' || echo './'`programs/vcffilterfilterflags.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcffilterfilterflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/vcfreplacecontigsmap-vcfreplacecontigsmap.o `test -f 'programs/vcfreplacecontigsmap.cpp' || echo './'`programs/vcfreplacecontigsmap.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/vcfreplacecontigsmap-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/fastaselectreg-fastaselectreg.o `test -f 'programs/fastaselectreg.cpp' || echo './'`programs/fastaselectreg.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/fastaselectreg-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o programs/bamaddne-bamaddne.o `test -f 'programs/bamaddne.cpp' || echo './'`programs/bamaddne.cpp programs/vcfreplacecontigsmap.cpp:29:12: warning: 'int getDefaultGZ()' defined but not used [-Wunused-function] 29 | static int getDefaultGZ() { return 0; } | ^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamaddne-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o biobambam2/bamsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamreset programs/bamreset-bamreset.o biobambam2/bamreset-Licensing.o biobambam2/bamreset-ResetAlignment.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamreset programs/bamreset-bamreset.o biobambam2/bamreset-Licensing.o biobambam2/bamreset-ResetAlignment.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamclipreinsert programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamclipreinsert programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamclipXT programs/bamclipXT-bamclipXT.o biobambam2/bamclipXT-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamclipXT programs/bamclipXT-bamclipXT.o biobambam2/bamclipXT-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilterrg programs/bamfilterrg-bamfilterrg.o biobambam2/bamfilterrg-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bammarkduplicates2 programs/bammarkduplicates2-bammarkduplicates2.o biobambam2/bammarkduplicates2-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilterrg programs/bamfilterrg-bamfilterrg.o biobambam2/bamfilterrg-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamcat programs/bamcat-bamcat.o biobambam2/bamcat-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bammarkduplicates2 programs/bammarkduplicates2-bammarkduplicates2.o biobambam2/bammarkduplicates2-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamcat programs/bamcat-bamcat.o biobambam2/bamcat-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamsplit programs/bamsplit-bamsplit.o biobambam2/bamsplit-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfastsplit programs/bamfastsplit-bamfastsplit.o biobambam2/bamfastsplit-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamsplit programs/bamsplit-bamsplit.o biobambam2/bamsplit-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamchecksort programs/bamchecksort-bamchecksort.o biobambam2/bamchecksort-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfastsplit programs/bamfastsplit-bamfastsplit.o biobambam2/bamfastsplit-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamchecksort programs/bamchecksort-bamchecksort.o biobambam2/bamchecksort-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamseqchksum programs/bamseqchksum-bamseqchksum.o biobambam2/bamseqchksum-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o normalisefasta programs/normalisefasta-normalisefasta.o biobambam2/normalisefasta-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilterheader programs/bamfilterheader-bamfilterheader.o biobambam2/bamfilterheader-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamseqchksum programs/bamseqchksum-bamseqchksum.o biobambam2/bamseqchksum-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o normalisefasta programs/normalisefasta-normalisefasta.o biobambam2/normalisefasta-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilterheader2 programs/bamfilterheader2-bamfilterheader2.o biobambam2/bamfilterheader2-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilterheader programs/bamfilterheader-bamfilterheader.o biobambam2/bamfilterheader-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bammdnm programs/bammdnm-bammdnm.o biobambam2/bammdnm-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bammapdist programs/bammapdist-bammapdist.o biobambam2/bammapdist-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamvalidate programs/bamvalidate-bamvalidate.o biobambam2/bamvalidate-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilterheader2 programs/bamfilterheader2-bamfilterheader2.o biobambam2/bamfilterheader2-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamflagsplit programs/bamflagsplit-bamflagsplit.o biobambam2/bamflagsplit-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bammdnm programs/bammdnm-bammdnm.o biobambam2/bammdnm-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamvalidate programs/bamvalidate-bamvalidate.o biobambam2/bamvalidate-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bammapdist programs/bammapdist-bammapdist.o biobambam2/bammapdist-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamflagsplit programs/bamflagsplit-bamflagsplit.o biobambam2/bamflagsplit-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamalignfrac programs/bamalignfrac-bamalignfrac.o biobambam2/bamalignfrac-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamalignfrac programs/bamalignfrac-bamalignfrac.o biobambam2/bamalignfrac-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamsormadup programs/bamsormadup-bamsormadup.o biobambam2/bamsormadup-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamexplode programs/bamexplode-bamexplode.o biobambam2/bamexplode-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamsormadup programs/bamsormadup-bamsormadup.o biobambam2/bamsormadup-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamexplode programs/bamexplode-bamexplode.o biobambam2/bamexplode-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamexploderef programs/bamexploderef-bamexploderef.o biobambam2/bamexploderef-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfastexploderef programs/bamfastexploderef-bamfastexploderef.o biobambam2/bamfastexploderef-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfastnumextract programs/bamfastnumextract-bamfastnumextract.o biobambam2/bamfastnumextract-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamexploderef programs/bamexploderef-bamexploderef.o biobambam2/bamexploderef-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfastexploderef programs/bamfastexploderef-bamfastexploderef.o biobambam2/bamfastexploderef-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfastnumextract programs/bamfastnumextract-bamfastnumextract.o biobambam2/bamfastnumextract-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o fastaexplod programs/fastaexplod-fastaexplod.o biobambam2/fastaexplod-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamrecalculatecigar programs/bamrecalculatecigar-bamrecalculatecigar.o biobambam2/bamrecalculatecigar-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfiltermc programs/bamfiltermc-bamfiltermc.o biobambam2/bamfiltermc-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamnumericalindex programs/bamnumericalindex-bamnumericalindex.o biobambam2/bamnumericalindex-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o fastaexplod programs/fastaexplod-fastaexplod.o biobambam2/fastaexplod-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamrecalculatecigar programs/bamrecalculatecigar-bamrecalculatecigar.o biobambam2/bamrecalculatecigar-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfiltermc programs/bamfiltermc-bamfiltermc.o biobambam2/bamfiltermc-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamnumericalindexstats programs/bamnumericalindexstats-bamnumericalindexstats.o biobambam2/bamnumericalindexstats-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamnumericalindex programs/bamnumericalindex-bamnumericalindex.o biobambam2/bamnumericalindex-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bammarkduplicatesopt programs/bammarkduplicatesopt-bammarkduplicatesopt.o biobambam2/bammarkduplicatesopt-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilterlength programs/bamfilterlength-bamfilterlength.o biobambam2/bamfilterlength-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamauxmerge programs/bamauxmerge-bamauxmerge.o biobambam2/bamauxmerge-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamrefinterval programs/bamrefinterval-bamrefinterval.o biobambam2/bamrefinterval-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamnumericalindexstats programs/bamnumericalindexstats-bamnumericalindexstats.o biobambam2/bamnumericalindexstats-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilterlength programs/bamfilterlength-bamfilterlength.o biobambam2/bamfilterlength-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bammarkduplicatesopt programs/bammarkduplicatesopt-bammarkduplicatesopt.o biobambam2/bammarkduplicatesopt-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamauxmerge programs/bamauxmerge-bamauxmerge.o biobambam2/bamauxmerge-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamrefinterval programs/bamrefinterval-bamrefinterval.o biobambam2/bamrefinterval-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfiltereofblocks programs/bamfiltereofblocks-bamfiltereofblocks.o biobambam2/bamfiltereofblocks-Licensing.o biobambam2/bamfiltereofblocks-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfiltereofblocks programs/bamfiltereofblocks-bamfiltereofblocks.o biobambam2/bamfiltereofblocks-Licensing.o biobambam2/bamfiltereofblocks-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamdepth programs/bamdepth-bamdepth.o biobambam2/bamdepth-Licensing.o biobambam2/bamdepth-DepthInterval.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilterk programs/bamfilterk-bamfilterk.o biobambam2/bamfilterk-Licensing.o biobambam2/bamfilterk-DepthInterval.o biobambam2/bamfilterk-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfixpairinfo programs/bamfixpairinfo-bamfixpairinfo.o biobambam2/bamfixpairinfo-Licensing.o biobambam2/bamfixpairinfo-DepthInterval.o biobambam2/bamfixpairinfo-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamdifference programs/bamdifference-bamdifference.o biobambam2/bamdifference-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamdepth programs/bamdepth-bamdepth.o biobambam2/bamdepth-Licensing.o biobambam2/bamdepth-DepthInterval.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilterk programs/bamfilterk-bamfilterk.o biobambam2/bamfilterk-Licensing.o biobambam2/bamfilterk-DepthInterval.o biobambam2/bamfilterk-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfixpairinfo programs/bamfixpairinfo-bamfixpairinfo.o biobambam2/bamfixpairinfo-Licensing.o biobambam2/bamfixpairinfo-DepthInterval.o biobambam2/bamfixpairinfo-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfeaturecount programs/bamfeaturecount-bamfeaturecount.o biobambam2/bamfeaturecount-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamdifference programs/bamdifference-bamdifference.o biobambam2/bamdifference-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfilterbyname programs/bamfilterbyname-bamfilterbyname.o biobambam2/bamfilterbyname-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfixmatecoordinates programs/bamfixmatecoordinates-bamfixmatecoordinates.o biobambam2/bamfixmatecoordinates-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfeaturecount programs/bamfeaturecount-bamfeaturecount.o biobambam2/bamfeaturecount-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfilterbyname programs/bamfilterbyname-bamfilterbyname.o biobambam2/bamfilterbyname-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfixmatecoordinates programs/bamfixmatecoordinates-bamfixmatecoordinates.o biobambam2/bamfixmatecoordinates-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamtoname programs/bamtoname-bamtoname.o biobambam2/bamtoname-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamdisthist programs/bamdisthist-bamdisthist.o biobambam2/bamdisthist-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o fastabgzfextract programs/fastabgzfextract-fastabgzfextract.o biobambam2/fastabgzfextract-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamheap programs/bamheap-bamheap.o biobambam2/bamheap-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamfrontback programs/bamfrontback-bamfrontback.o biobambam2/bamfrontback-Licensing.o biobambam2/bamfrontback-ResetAlignment.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamtoname programs/bamtoname-bamtoname.o biobambam2/bamtoname-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamdisthist programs/bamdisthist-bamdisthist.o biobambam2/bamdisthist-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamrandomtag programs/bamrandomtag-bamrandomtag.o biobambam2/bamrandomtag-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamheap programs/bamheap-bamheap.o biobambam2/bamheap-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o fastabgzfextract programs/fastabgzfextract-fastabgzfextract.o biobambam2/fastabgzfextract-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamfrontback programs/bamfrontback-bamfrontback.o biobambam2/bamfrontback-Licensing.o biobambam2/bamfrontback-ResetAlignment.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamheap3 programs/bamheap3-bamheap3.o biobambam2/bamheap3-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamtagconversion programs/bamtagconversion-bamtagconversion.o biobambam2/bamtagconversion-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamrandomtag programs/bamrandomtag-bamrandomtag.o biobambam2/bamrandomtag-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamheap3 programs/bamheap3-bamheap3.o biobambam2/bamheap3-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o fastqtobampar programs/fastqtobampar-fastqtobampar.o biobambam2/fastqtobampar-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamtagconversion programs/bamtagconversion-bamtagconversion.o biobambam2/bamtagconversion-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bambisect programs/bambisect-bambisect.o biobambam2/bambisect-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o fastqtobampar programs/fastqtobampar-fastqtobampar.o biobambam2/fastqtobampar-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcfpatchcontigprepend programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o biobambam2/vcfpatchcontigprepend-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcfconcat programs/vcfconcat-vcfconcat.o biobambam2/vcfconcat-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bambisect programs/bambisect-bambisect.o biobambam2/bambisect-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcfsort programs/vcfsort-vcfsort.o biobambam2/vcfsort-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o filtergtf programs/filtergtf-filtergtf.o biobambam2/filtergtf-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcfpatchcontigprepend programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o biobambam2/vcfpatchcontigprepend-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcfconcat programs/vcfconcat-vcfconcat.o biobambam2/vcfconcat-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcfreplacecontigs programs/vcfreplacecontigs-vcfreplacecontigs.o biobambam2/vcfreplacecontigs-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcffiltersamples programs/vcffiltersamples-vcffiltersamples.o biobambam2/vcffiltersamples-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamheadercat programs/bamheadercat-bamheadercat.o biobambam2/bamheadercat-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcfsort programs/vcfsort-vcfsort.o biobambam2/vcfsort-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o filtergtf programs/filtergtf-filtergtf.o biobambam2/filtergtf-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcfreplacecontigs programs/vcfreplacecontigs-vcfreplacecontigs.o biobambam2/vcfreplacecontigs-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcfdiff programs/vcfdiff-vcfdiff.o biobambam2/vcfdiff-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcffiltersamples programs/vcffiltersamples-vcffiltersamples.o biobambam2/vcffiltersamples-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamheadercat programs/bamheadercat-bamheadercat.o biobambam2/bamheadercat-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamdepthmerge programs/bamdepthmerge-bamdepthmerge.o biobambam2/bamdepthmerge-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcffilterfilterflags programs/vcffilterfilterflags-vcffilterfilterflags.o biobambam2/vcffilterfilterflags-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o vcfreplacecontigsmap programs/vcfreplacecontigsmap-vcfreplacecontigsmap.o biobambam2/vcfreplacecontigsmap-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o fastaselectreg programs/fastaselectreg-fastaselectreg.o biobambam2/fastaselectreg-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcfdiff programs/vcfdiff-vcfdiff.o biobambam2/vcfdiff-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamdepthmerge programs/bamdepthmerge-bamdepthmerge.o biobambam2/bamdepthmerge-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcffilterfilterflags programs/vcffilterfilterflags-vcffilterfilterflags.o biobambam2/vcffilterfilterflags-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o vcfreplacecontigsmap programs/vcfreplacecontigsmap-vcfreplacecontigsmap.o biobambam2/vcfreplacecontigsmap-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o fastaselectreg programs/fastaselectreg-fastaselectreg.o biobambam2/fastaselectreg-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamexploderg programs/bamexploderg-bamexploderg.o biobambam2/bamexploderg-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamexploderg programs/bamexploderg-bamexploderg.o biobambam2/bamexploderg-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamsimpledepth programs/bamsimpledepth-bamsimpledepth.o biobambam2/bamsimpledepth-Licensing.o biobambam2/bamsimpledepth-DepthInterval.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamsimpledepth programs/bamsimpledepth-bamsimpledepth.o biobambam2/bamsimpledepth-Licensing.o biobambam2/bamsimpledepth-DepthInterval.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamcountflags programs/bamcountflags-bamcountflags.o biobambam2/bamcountflags-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamcountflags programs/bamcountflags-bamcountflags.o biobambam2/bamcountflags-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamexondepth programs/bamexondepth-bamexondepth.o biobambam2/bamexondepth-Licensing.o biobambam2/bamexondepth-DepthInterval.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamexondepth programs/bamexondepth-bamexondepth.o biobambam2/bamexondepth-Licensing.o biobambam2/bamexondepth-DepthInterval.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bammarkduplicatesoptdist programs/bammarkduplicatesoptdist-bammarkduplicatesoptdist.o biobambam2/bammarkduplicatesoptdist-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bammarkduplicatesoptdist programs/bammarkduplicatesoptdist-bammarkduplicatesoptdist.o biobambam2/bammarkduplicatesoptdist-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp make[3]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/src' Making all in test make[3]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[3]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[3]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[2]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[1]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' dh_auto_test make -j12 check VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' Making check in src make[2]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/src' Making check in test make[2]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make bamcmp bamtosam make[3]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o bamcmp-bamcmp.o `test -f 'bamcmp.cpp' || echo './'`bamcmp.cpp g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o bamtosam-bamtosam.o `test -f 'bamtosam.cpp' || echo './'`bamtosam.cpp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamtosam bamtosam-bamtosam.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -o bamcmp bamcmp-bamcmp.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamtosam bamtosam-bamtosam.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/biobambam2-2.0.179+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o bamcmp bamcmp-bamcmp.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp make[3]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make check-TESTS make[3]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[4]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' PASS: testshortsortcoordinate.sh PASS: testshortsortqueryname.sh PASS: testshortsort.sh PASS: testdupsinglemarkedsortedqreset.sh PASS: testdupsingle.sh PASS: testfastqbamloop.sh ============================================================================ Testsuite summary for biobambam2 2.0.179 ============================================================================ # TOTAL: 6 # PASS: 6 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[3]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[2]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[2]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[2]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[1]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/biobambam2-2.0.179\+ds/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' Making install in src make[2]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/src' make[3]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/src' /bin/mkdir -p '/build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract bamranksort fastaexplod bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat populaterefcache bamfiltereofblocks bamdepth bamdepthintersect bamfilterk bamfixpairinfo bamdifference bamfeaturecount '/build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamalignfrac /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c bamranksort /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c fastaexplod /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/fastaexplod libtool: install: /usr/bin/install -c bamrecalculatecigar /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c populaterefcache /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bamfiltereofblocks /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamdepthintersect libtool: install: /usr/bin/install -c bamfilterk /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfilterk libtool: install: /usr/bin/install -c bamfixpairinfo /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfixpairinfo libtool: install: /usr/bin/install -c bamdifference /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamdifference libtool: install: /usr/bin/install -c bamfeaturecount /build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/bin/bamfeaturecount /bin/mkdir -p '/build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplod.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 programs/bamconsensus.1 programs/filtergtf.1 programs/bamfeaturecount.1 '/build/reproducible-path/biobambam2-2.0.179+ds/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/src' make[2]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/src' Making install in test make[2]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[3]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[2]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds/test' make[2]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[3]: Entering directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[2]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' make[1]: Leaving directory '/build/reproducible-path/biobambam2-2.0.179+ds' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/fastaexplod debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamfeaturecount debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamfilterk debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bamdifference debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamfixpairinfo debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamfilterrg were not linked against libmaus2_simd_align_128.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/fastaexplod debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamfeaturecount debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamfilterk debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bamdifference debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamfixpairinfo debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamfilterrg were not linked against libmaus2_simd_align_256.so.2 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.179+ds-1_amd64.deb'. dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.179+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../biobambam2_2.0.179+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/748683/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/748683/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/748683 and its subdirectories I: Current time: Mon Jul 1 05:44:12 +14 2024 I: pbuilder-time-stamp: 1719762252