I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 11 12:00:12 -12 2025 I: pbuilder-time-stamp: 1754956812 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [igdiscover_0.11-3.dsc] I: copying [./igdiscover_0.11.orig.tar.gz] I: copying [./igdiscover_0.11-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.e5U2nTjg/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 5 18:52:26 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./igdiscover_0.11-3.dsc dpkg-source: info: extracting igdiscover in igdiscover-0.11 dpkg-source: info: unpacking igdiscover_0.11.orig.tar.gz dpkg-source: info: unpacking igdiscover_0.11-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying minoverlap.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/701254/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='41132d084e2344a586a0e22672235d60' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='701254' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2xRAvbR6/pbuilderrc_vlML --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2xRAvbR6/b1 --logfile b1/build.log igdiscover_0.11-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Mar 27 2024 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Mar 27 2024 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Mar 27 2024 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Mar 27 2024 more -rwsr-xr-x 1 root root 55528 Mar 27 2024 mount -rwxr-xr-x 1 root root 18664 Mar 27 2024 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 9 03:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Mar 27 2024 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Jan 19 2024 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Mar 27 2024 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Mar 27 2024 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/701254/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3-all, python3-setuptools, python3-sqt, python3-pandas (>= 0.16.2), python3-numpy, python3-matplotlib (>= 1.5.0), python3-cutadapt, python3-scipy (>= 0.16.1), python3-xopen (>= 0.3.2), python3-ruamel.yaml, python3-pytest, snakemake, python3-sphinx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sqt; however: Package python3-sqt is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 0.16.2); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib (>= 1.5.0); however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-cutadapt; however: Package python3-cutadapt is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 0.16.1); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen (>= 0.3.2); however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on snakemake; however: Package snakemake is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} coinor-cbc{a} coinor-libcbc3{a} coinor-libcgl1{a} coinor-libclp1{a} coinor-libcoinutils3v5{a} coinor-libosi1v5{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} git{a} git-man{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libc-ares2{a} libcurl3-gnutls{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} liberror-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran5{a} libglib2.0-0{a} libhts3{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-d3{a} libjs-d3-format{a} libjs-inherits{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-sprintf-js{a} libjs-underscore{a} libjs-util{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libnghttp2-14{a} libnode72{a} libnotify-bin{a} libnotify4{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtcl8.6{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libyaml-0-2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} mocha{a} node-ansi-colors{a} node-ansi-regex{a} node-ansi-styles{a} node-anymatch{a} node-argparse{a} node-assert{a} node-async-each{a} node-balanced-match{a} node-binary-extensions{a} node-brace-expansion{a} node-braces{a} node-browser-stdout{a} node-camelcase{a} node-chalk{a} node-chokidar{a} node-cliui{a} node-clone{a} node-color-convert{a} node-color-name{a} node-commander{a} node-d3{a} node-d3-array{a} node-d3-axis{a} node-d3-brush{a} node-d3-chord{a} node-d3-collection{a} node-d3-color{a} node-d3-contour{a} node-d3-dispatch{a} node-d3-drag{a} node-d3-dsv{a} node-d3-ease{a} node-d3-fetch{a} node-d3-force{a} node-d3-format{a} node-d3-geo{a} node-d3-hierarchy{a} node-d3-interpolate{a} node-d3-path{a} node-d3-polygon{a} node-d3-quadtree{a} node-d3-queue{a} node-d3-random{a} node-d3-scale{a} node-d3-scale-chromatic{a} node-d3-selection{a} node-d3-shape{a} node-d3-time{a} node-d3-time-format{a} node-d3-timer{a} node-d3-transition{a} node-d3-voronoi{a} node-d3-zoom{a} node-dagre-d3-renderer{a} node-dagre-layout{a} node-debug{a} node-decamelize{a} node-defaults{a} node-diff{a} node-end-of-stream{a} node-escape-string-regexp{a} node-esprima{a} node-execa{a} node-fill-range{a} node-find-up{a} node-fs.realpath{a} node-get-caller-file{a} node-get-stream{a} node-glob{a} node-glob-parent{a} node-graceful-fs{a} node-graphlibrary{a} node-growl{a} node-has-flag{a} node-he{a} node-iconv-lite{a} node-inflight{a} node-inherits{a} node-invert-kv{a} node-is-binary-path{a} node-is-buffer{a} node-is-extglob{a} node-is-glob{a} node-is-number{a} node-is-plain-obj{a} node-is-stream{a} node-isexe{a} node-js-yaml{a} node-kind-of{a} node-lcid{a} node-locate-path{a} node-lodash{a} node-mem{a} node-merge-stream{a} node-mimic-fn{a} node-minimatch{a} node-ms{a} node-normalize-path{a} node-npm-run-path{a} node-object-assign{a} node-once{a} node-os-locale{a} node-p-limit{a} node-p-locate{a} node-path-dirname{a} node-path-exists{a} node-path-is-absolute{a} node-pump{a} node-randombytes{a} node-readdirp{a} node-repeat-string{a} node-require-directory{a} node-require-main-filename{a} node-rw{a} node-safe-buffer{a} node-serialize-javascript{a} node-set-blocking{a} node-set-immediate-shim{a} node-shebang-command{a} node-shebang-regex{a} node-signal-exit{a} node-sprintf-js{a} node-string-width{a} node-strip-ansi{a} node-strip-json-comments{a} node-supports-color{a} node-to-regex-range{a} node-util{a} node-wcwidth.js{a} node-which{a} node-which-module{a} node-wide-align{a} node-wrap-ansi{a} node-wrappy{a} node-y18n{a} node-yargs{a} node-yargs-parser{a} nodejs{a} openssl{a} pigz{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-appdirs{a} python3-attr{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-configargparse{a} python3-cutadapt{a} python3-cycler{a} python3-dateutil{a} python3-datrie{a} python3-decorator{a} python3-distutils{a} python3-dnaio{a} python3-docutils{a} python3-git{a} python3-gitdb{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-ipython-genutils{a} python3-jinja2{a} python3-jsonschema{a} python3-jupyter-core{a} python3-kiwisolver{a} python3-lib2to3{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-nbformat{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-psutil{a} python3-pulp{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pyrsistent{a} python3-pysam{a} python3-pytest{a} python3-ratelimiter{a} python3-requests{a} python3-roman{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-smmap{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sqt{a} python3-tk{a} python3-toml{a} python3-toposort{a} python3-traitlets{a} python3-tz{a} python3-urllib3{a} python3-wrapt{a} python3-xopen{a} python3-yaml{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} snakemake{a} sphinx-common{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} ttf-bitstream-vera{a} ucf{a} x11-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: awesome cinnamon curl cwltool dunst fonts-noto-color-emoji gnome-flashback gnome-shell graphicsmagick-imagemagick-compat imagemagick imagemagick-6.q16 javascript-common less libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lxqt-notificationd lynx mate-notification-daemon nodejs-doc notification-daemon notify-osd openssh-client phosh plasma-workspace publicsuffix python3-azure-storage python3-biopython python3-boto3 python3-botocore python3-bottleneck python3-bs4 python3-dropbox python3-flask python3-ftputil python3-html5lib python3-irodsclient python3-jarabe python3-kubernetes python3-lxml python3-networkx python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-pygraphviz python3-tables python3-xlwt python3-yappi wget xdg-user-dirs xfce4-notifyd 0 packages upgraded, 347 newly installed, 0 to remove and 0 not upgraded. Need to get 124 MB of archives. After unpacking 518 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u2 [146 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 pigz amd64 2.6-1 [64.0 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-1 [485 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [276 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 coinor-libclp1 amd64 1.17.5+repack1-1 [939 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 coinor-libcgl1 amd64 0.60.3+repack1-2 [433 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 coinor-libcbc3 amd64 2.10.5+ds1-3 [715 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 coinor-cbc amd64 2.10.5+ds1-3 [14.7 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 docutils-common all 0.16+dfsg-4 [129 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2+deb11u1 [156 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u12 [344 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 liberror-perl all 0.17029-1 [31.0 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 git-man all 1:2.30.2-1+deb11u2 [1828 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 git amd64 1:2.30.2-1+deb11u2 [5518 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libc-ares2 amd64 1.17.1-1+deb11u3 [102 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u2 [320 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u4 [1377 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 110 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.2+dfsg-1+deb11u2 [147 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get: 115 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get: 118 http://deb.debian.org/debian bullseye/main amd64 libjs-d3-format all 1:1.4.1-3 [16.9 kB] Get: 119 http://deb.debian.org/debian bullseye/main amd64 libjs-inherits all 2.0.4-1 [3228 B] Get: 120 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 libjs-sprintf-js all 1.1.2+ds1-2 [12.3 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2+deb11u1 [132 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 libnode72 amd64 12.22.12~dfsg-1~deb11u4 [8332 kB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 nodejs amd64 12.22.12~dfsg-1~deb11u4 [148 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 node-inherits all 2.0.4-1 [4204 B] Get: 130 http://deb.debian.org/debian bullseye/main amd64 libjs-util all 0.10.3-4 [9620 B] Get: 131 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get: 132 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 133 http://deb.debian.org/debian bullseye/main amd64 libnotify4 amd64 0.7.9-3 [23.7 kB] Get: 134 http://deb.debian.org/debian bullseye/main amd64 libnotify-bin amd64 0.7.9-3 [14.2 kB] Get: 135 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get: 137 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 node-ansi-colors all 4.1.1-2 [13.2 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 node-browser-stdout all 1.3.1-2 [3268 B] Get: 140 http://deb.debian.org/debian bullseye/main amd64 node-camelcase all 6.2.0-2 [5512 B] Get: 141 http://deb.debian.org/debian bullseye/main amd64 node-color-name all 1.1.4+~1.1.1-1 [5788 B] Get: 142 http://deb.debian.org/debian bullseye/main amd64 node-color-convert all 1.9.3-1 [10.2 kB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 node-ansi-styles all 4.2.1-1 [7600 B] Get: 144 http://deb.debian.org/debian bullseye/main amd64 node-escape-string-regexp all 4.0.0-1 [4116 B] Get: 145 http://deb.debian.org/debian bullseye/main amd64 node-has-flag all 4.0.0-1 [4076 B] Get: 146 http://deb.debian.org/debian bullseye/main amd64 node-supports-color all 8.1.0+~7.2.0-1 [6736 B] Get: 147 http://deb.debian.org/debian bullseye/main amd64 node-chalk all 4.1.0-1 [15.0 kB] Get: 148 http://deb.debian.org/debian bullseye/main amd64 node-is-extglob all 2.1.1-1 [4128 B] Get: 149 http://deb.debian.org/debian bullseye/main amd64 node-is-glob all 4.0.1-1 [6312 B] Get: 150 http://deb.debian.org/debian bullseye/main amd64 node-binary-extensions all 2.2.0-1 [4352 B] Get: 151 http://deb.debian.org/debian bullseye/main amd64 node-is-binary-path all 2.1.0-1 [3432 B] Get: 152 http://deb.debian.org/debian bullseye/main amd64 node-normalize-path all 3.0.0-2 [5752 B] Get: 153 http://deb.debian.org/debian bullseye/main amd64 node-anymatch all 3.1.1+~2.2.2-1 [28.5 kB] Get: 154 http://deb.debian.org/debian bullseye/main amd64 node-graceful-fs all 4.2.4+repack-1 [13.1 kB] Get: 155 http://deb.debian.org/debian bullseye/main amd64 node-set-immediate-shim all 2.0.0-1 [3600 B] Get: 156 http://deb.debian.org/debian bullseye/main amd64 node-readdirp all 3.5.0-2 [11.3 kB] Get: 157 http://deb.debian.org/debian bullseye/main amd64 node-async-each all 1.0.3-1 [4024 B] Get: 158 http://deb.debian.org/debian bullseye/main amd64 node-is-buffer all 2.0.5-1 [4048 B] Get: 159 http://deb.debian.org/debian bullseye/main amd64 node-kind-of all 6.0.3+dfsg-1 [10.0 kB] Get: 160 http://deb.debian.org/debian bullseye/main amd64 node-is-number all 7.0.0-1.1 [5860 B] Get: 161 http://deb.debian.org/debian bullseye/main amd64 node-repeat-string all 1.6.1-1 [5180 B] Get: 162 http://deb.debian.org/debian bullseye/main amd64 node-to-regex-range all 5.0.1-2 [10.2 kB] Get: 163 http://deb.debian.org/debian bullseye/main amd64 node-fill-range all 7.0.1-2 [7872 B] Get: 164 http://deb.debian.org/debian bullseye/main amd64 node-braces all 3.0.2+~3.0.0-1 [20.6 kB] Get: 165 http://deb.debian.org/debian bullseye/main amd64 node-path-is-absolute all 2.0.0-1 [3864 B] Get: 166 http://deb.debian.org/debian bullseye/main amd64 node-path-dirname all 1.0.2-1.1 [3972 B] Get: 167 http://deb.debian.org/debian bullseye/main amd64 node-glob-parent all 5.1.1+~5.1.0-2 [6672 B] Get: 168 http://deb.debian.org/debian bullseye/main amd64 node-chokidar all 3.4.3-3 [32.0 kB] Get: 169 http://deb.debian.org/debian bullseye/main amd64 node-ms all 2.1.3+~cs0.7.31-1 [5612 B] Get: 170 http://deb.debian.org/debian bullseye/main amd64 node-debug all 4.3.1+~cs4.1.5-1 [17.3 kB] Get: 171 http://deb.debian.org/debian bullseye/main amd64 node-decamelize all 4.0.0-1 [3944 B] Get: 172 http://deb.debian.org/debian bullseye/main amd64 node-diff all 4.0.2~dfsg-2 [65.0 kB] Get: 173 http://deb.debian.org/debian bullseye/main amd64 node-p-limit all 3.1.0+~cs2.3.0-1 [6904 B] Get: 174 http://deb.debian.org/debian bullseye/main amd64 node-p-locate all 5.0.0-1 [5080 B] Get: 175 http://deb.debian.org/debian bullseye/main amd64 node-path-exists all 4.0.0-2 [3840 B] Get: 176 http://deb.debian.org/debian bullseye/main amd64 node-locate-path all 6.0.0-1 [5264 B] Get: 177 http://deb.debian.org/debian bullseye/main amd64 node-find-up all 5.0.0-1 [5840 B] Get: 178 http://deb.debian.org/debian bullseye/main amd64 node-fs.realpath all 1.0.0-1.1 [5780 B] Get: 179 http://deb.debian.org/debian bullseye/main amd64 node-wrappy all 1.0.2-1.1 [3352 B] Get: 180 http://deb.debian.org/debian bullseye/main amd64 node-once all 1.4.0-3 [4344 B] Get: 181 http://deb.debian.org/debian bullseye/main amd64 node-inflight all 1.0.6-1.1 [3568 B] Get: 182 http://deb.debian.org/debian bullseye/main amd64 node-balanced-match all 1.0.0-1 [4528 B] Get: 183 http://deb.debian.org/debian bullseye/main amd64 node-brace-expansion all 2.0.0-1 [7184 B] Get: 184 http://deb.debian.org/debian bullseye/main amd64 node-minimatch all 3.0.4+~3.0.3-1+deb11u2 [16.1 kB] Get: 185 http://deb.debian.org/debian bullseye/main amd64 node-glob all 7.1.6+~7.1.3-1 [129 kB] Get: 186 http://deb.debian.org/debian bullseye/main amd64 node-growl all 1.10.5-2 [7356 B] Get: 187 http://deb.debian.org/debian bullseye/main amd64 node-he all 1.2.0-1 [36.7 kB] Get: 188 http://deb.debian.org/debian bullseye/main amd64 node-is-plain-obj all 3.0.0-1 [3916 B] Get: 189 http://deb.debian.org/debian bullseye/main amd64 node-sprintf-js all 1.1.2+ds1-2 [1836 B] Get: 190 http://deb.debian.org/debian bullseye/main amd64 node-argparse all 2.0.1-1 [34.5 kB] Get: 191 http://deb.debian.org/debian bullseye/main amd64 node-esprima all 4.0.1+ds+~4.0.2-2 [69.0 kB] Get: 192 http://deb.debian.org/debian bullseye/main amd64 node-js-yaml all 3.14.1+dfsg+~3.12.6-2 [44.8 kB] Get: 193 http://deb.debian.org/debian bullseye/main amd64 node-safe-buffer all 5.2.1+~cs2.1.2-1 [15.5 kB] Get: 194 http://deb.debian.org/debian bullseye/main amd64 node-randombytes all 2.1.0-1 [4104 B] Get: 195 http://deb.debian.org/debian bullseye/main amd64 node-serialize-javascript all 5.0.1-2 [11.5 kB] Get: 196 http://deb.debian.org/debian bullseye/main amd64 node-strip-json-comments all 3.1.1-1 [5168 B] Get: 197 http://deb.debian.org/debian bullseye/main amd64 node-isexe all 2.0.0-5 [4632 B] Get: 198 http://deb.debian.org/debian bullseye/main amd64 node-which all 2.0.2+~cs1.3.2-1 [8436 B] Get: 199 http://deb.debian.org/debian bullseye/main amd64 node-ansi-regex all 5.0.1-1~deb11u1 [4704 B] Get: 200 http://deb.debian.org/debian bullseye/main amd64 node-strip-ansi all 6.0.0-2 [4044 B] Get: 201 http://deb.debian.org/debian bullseye/main amd64 node-clone all 2.1.2-2 [8132 B] Get: 202 http://deb.debian.org/debian bullseye/main amd64 node-defaults all 1.0.3-2 [3612 B] Get: 203 http://deb.debian.org/debian bullseye/main amd64 node-wcwidth.js all 1.0.0-1.1 [6652 B] Get: 204 http://deb.debian.org/debian bullseye/main amd64 node-string-width all 4.2.0-1 [9716 B] Get: 205 http://deb.debian.org/debian bullseye/main amd64 node-wide-align all 1.1.3-1 [3896 B] Get: 206 http://deb.debian.org/debian bullseye/main amd64 node-require-directory all 2.1.1-1.1 [5596 B] Get: 207 http://deb.debian.org/debian bullseye/main amd64 node-get-caller-file all 1.0.2-1.1 [3056 B] Get: 208 http://deb.debian.org/debian bullseye/main amd64 node-set-blocking all 2.0.0-1.1 [4036 B] Get: 209 http://deb.debian.org/debian bullseye/main amd64 node-require-main-filename all 2.0.0-1 [4108 B] Get: 210 http://deb.debian.org/debian bullseye/main amd64 node-wrap-ansi all 4.0.0-2 [5540 B] Get: 211 http://deb.debian.org/debian bullseye/main amd64 node-cliui all 4.1.0-2 [7964 B] Get: 212 http://deb.debian.org/debian bullseye/main amd64 node-which-module all 2.0.0-1 [3792 B] Get: 213 http://deb.debian.org/debian bullseye/main amd64 node-end-of-stream all 1.4.4-1 [4356 B] Get: 214 http://deb.debian.org/debian bullseye/main amd64 node-pump all 3.0.0-4 [4936 B] Get: 215 http://deb.debian.org/debian bullseye/main amd64 node-get-stream all 6.0.0-1 [7172 B] Get: 216 http://deb.debian.org/debian bullseye/main amd64 node-is-stream all 2.0.0-1 [4004 B] Get: 217 http://deb.debian.org/debian bullseye/main amd64 node-merge-stream all 2.0.0+~1.1.2-1 [5036 B] Get: 218 http://deb.debian.org/debian bullseye/main amd64 node-mimic-fn all 3.1.0-1 [5180 B] Get: 219 http://deb.debian.org/debian bullseye/main amd64 node-npm-run-path all 2.0.2-2 [4412 B] Get: 220 http://deb.debian.org/debian bullseye/main amd64 node-shebang-regex all 3.0.0-1 [3352 B] Get: 221 http://deb.debian.org/debian bullseye/main amd64 node-shebang-command all 1.2.0-1.1 [3132 B] Get: 222 http://deb.debian.org/debian bullseye/main amd64 node-signal-exit all 3.0.3-1 [6172 B] Get: 223 http://deb.debian.org/debian bullseye/main amd64 node-execa all 4.1.0+dfsg+~cs19.3.6-5 [28.1 kB] Get: 224 http://deb.debian.org/debian bullseye/main amd64 node-invert-kv all 3.0.1-1 [3904 B] Get: 225 http://deb.debian.org/debian bullseye/main amd64 node-lcid all 3.1.1-1 [5280 B] Get: 226 http://deb.debian.org/debian bullseye/main amd64 node-mem all 1.1.0-1.1 [4308 B] Get: 227 http://deb.debian.org/debian bullseye/main amd64 node-os-locale all 5.0.0-1 [4876 B] Get: 228 http://deb.debian.org/debian bullseye/main amd64 node-y18n all 4.0.0-4 [6256 B] Get: 229 http://deb.debian.org/debian bullseye/main amd64 node-yargs-parser all 18.1.3+~15.0.0-1 [24.0 kB] Get: 230 http://deb.debian.org/debian bullseye/main amd64 node-yargs all 15.3.1+repack-2 [109 kB] Get: 231 http://deb.debian.org/debian bullseye/main amd64 mocha all 8.2.1+ds1+~cs29.4.27-3 [157 kB] Get: 232 http://deb.debian.org/debian bullseye/main amd64 node-object-assign all 4.1.1-3 [4460 B] Get: 233 http://deb.debian.org/debian bullseye/main amd64 node-util all 0.10.3-4 [2960 B] Get: 234 http://deb.debian.org/debian bullseye/main amd64 node-assert all 1.5.0-1 [8892 B] Get: 235 http://deb.debian.org/debian bullseye/main amd64 node-commander all 6.2.1-2 [38.3 kB] Get: 236 http://deb.debian.org/debian bullseye/main amd64 node-d3-array all 1.2.4-3 [19.2 kB] Get: 237 http://deb.debian.org/debian bullseye/main amd64 node-d3-axis all 1.0.12-3 [10.1 kB] Get: 238 http://deb.debian.org/debian bullseye/main amd64 node-d3-dispatch all 1.0.6-2 [7856 B] Get: 239 http://deb.debian.org/debian bullseye/main amd64 node-d3-selection all 1.4.0-6 [30.7 kB] Get: 240 http://deb.debian.org/debian bullseye/main amd64 node-d3-drag all 1.2.5-2 [13.9 kB] Get: 241 http://deb.debian.org/debian bullseye/main amd64 node-d3-color all 1.2.8-2 [15.0 kB] Get: 242 http://deb.debian.org/debian bullseye/main amd64 node-d3-interpolate all 1.4.0-2 [18.5 kB] Get: 243 http://deb.debian.org/debian bullseye/main amd64 node-d3-ease all 1.0.5-3 [9932 B] Get: 244 http://deb.debian.org/debian bullseye/main amd64 node-d3-timer all 1.0.10-1 [8608 B] Get: 245 http://deb.debian.org/debian bullseye/main amd64 node-d3-transition all 1.3.2-3 [22.2 kB] Get: 246 http://deb.debian.org/debian bullseye/main amd64 node-d3-brush all 1.1.5-2 [181 kB] Get: 247 http://deb.debian.org/debian bullseye/main amd64 node-d3-path all 1.0.9-2 [8212 B] Get: 248 http://deb.debian.org/debian bullseye/main amd64 node-d3-chord all 1.0.6-3 [10.0 kB] Get: 249 http://deb.debian.org/debian bullseye/main amd64 node-d3-collection all 1.0.7-3 [11.7 kB] Get: 250 http://deb.debian.org/debian bullseye/main amd64 node-d3-contour all 1.3.2-4 [13.6 kB] Get: 251 http://deb.debian.org/debian bullseye/main amd64 node-iconv-lite all 0.5.1-3 [128 kB] Get: 252 http://deb.debian.org/debian bullseye/main amd64 node-d3-queue all 3.0.7-11 [9828 B] Get: 253 http://deb.debian.org/debian bullseye/main amd64 node-rw all 1.3.3-2 [7096 B] Get: 254 http://deb.debian.org/debian bullseye/main amd64 node-d3-dsv all 1.1.1-5 [14.5 kB] Get: 255 http://deb.debian.org/debian bullseye/main amd64 node-d3-fetch all 1.2.0-1 [7344 B] Get: 256 http://deb.debian.org/debian bullseye/main amd64 node-d3-quadtree all 1.0.7-2 [13.1 kB] Get: 257 http://deb.debian.org/debian bullseye/main amd64 node-d3-force all 1.2.1-2 [368 kB] Get: 258 http://deb.debian.org/debian bullseye/main amd64 node-d3-format all 1:1.4.1-3 [9004 B] Get: 259 http://deb.debian.org/debian bullseye/main amd64 node-d3-geo all 1.11.9-4 [53.6 kB] Get: 260 http://deb.debian.org/debian bullseye/main amd64 node-d3-hierarchy all 1.1.8-3 [28.6 kB] Get: 261 http://deb.debian.org/debian bullseye/main amd64 node-d3-polygon all 1.0.5-3 [7396 B] Get: 262 http://deb.debian.org/debian bullseye/main amd64 node-d3-random all 1.1.2-3 [7184 B] Get: 263 http://deb.debian.org/debian bullseye/main amd64 node-d3-time all 1.0.11-4 [14.6 kB] Get: 264 http://deb.debian.org/debian bullseye/main amd64 node-d3-time-format all 2.1.3-3 [18.9 kB] Get: 265 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale all 2.2.2-3 [31.5 kB] Get: 266 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale-chromatic all 1.5.0-2 [18.5 kB] Get: 267 http://deb.debian.org/debian bullseye/main amd64 node-d3-shape all 1.3.7-2 [40.4 kB] Get: 268 http://deb.debian.org/debian bullseye/main amd64 node-d3-voronoi all 1.1.4-3 [17.1 kB] Get: 269 http://deb.debian.org/debian bullseye/main amd64 node-d3-zoom all 1.8.3-2 [20.1 kB] Get: 270 http://deb.debian.org/debian bullseye/main amd64 node-d3 all 5.16.0-4 [208 kB] Get: 271 http://deb.debian.org/debian bullseye/main amd64 node-lodash all 4.17.21+dfsg+~cs8.31.173-1 [385 kB] Get: 272 http://deb.debian.org/debian bullseye/main amd64 node-graphlibrary all 2.2.0+really2.1.8+dfsg-3 [53.2 kB] Get: 273 http://deb.debian.org/debian bullseye/main amd64 node-dagre-layout all 0.8.8+really0.8.5+dfsg-4 [42.4 kB] Get: 274 http://deb.debian.org/debian bullseye/main amd64 node-dagre-d3-renderer all 0.6.4+dfsg-3 [601 kB] Get: 275 http://deb.debian.org/debian bullseye/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 276 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 277 http://deb.debian.org/debian bullseye/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 278 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 279 http://deb.debian.org/debian bullseye/main amd64 python3-appdirs all 1.4.4-1 [12.7 kB] Get: 280 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get: 281 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 282 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get: 283 http://deb.debian.org/debian bullseye/main amd64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 284 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get: 285 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 286 http://deb.debian.org/debian bullseye/main amd64 python3-configargparse all 1.2.3-1 [25.2 kB] Get: 287 http://deb.debian.org/debian bullseye/main amd64 python3-xopen all 1.1.0-1 [12.0 kB] Get: 288 http://deb.debian.org/debian bullseye/main amd64 python3-dnaio amd64 0.5.0-1 [95.3 kB] Get: 289 http://deb.debian.org/debian bullseye/main amd64 python3-cutadapt amd64 3.2-2 [125 kB] Get: 290 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 291 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get: 292 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 293 http://deb.debian.org/debian bullseye/main amd64 python3-datrie amd64 0.8.2-1+b1 [98.5 kB] Get: 294 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 295 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get: 296 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 297 http://deb.debian.org/debian bullseye/main amd64 python3-smmap all 4.0.0-1 [21.0 kB] Get: 298 http://deb.debian.org/debian bullseye/main amd64 python3-gitdb all 4.0.5-1 [46.5 kB] Get: 299 http://deb.debian.org/debian bullseye/main amd64 python3-git all 3.1.14-1 [119 kB] Get: 300 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1+deb11u1 [39.0 kB] Get: 301 http://deb.debian.org/debian bullseye/main amd64 python3-imagesize all 1.2.0-2 [5824 B] Get: 302 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 303 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get: 304 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 305 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 306 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get: 307 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get: 308 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get: 309 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get: 310 http://deb.debian.org/debian bullseye/main amd64 python3-pyrsistent amd64 0.15.5-1+b3 [59.1 kB] Get: 311 http://deb.debian.org/debian bullseye/main amd64 python3-jsonschema all 3.2.0-3 [46.3 kB] Get: 312 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get: 313 http://deb.debian.org/debian bullseye/main amd64 python3-jupyter-core all 4.7.1-1+deb11u1 [44.2 kB] Get: 314 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get: 315 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 316 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 317 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u2 [446 kB] Get: 318 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get: 319 http://deb.debian.org/debian bullseye/main amd64 python3-nbformat all 5.1.2-1 [51.6 kB] Get: 320 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get: 321 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get: 322 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 323 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 324 http://deb.debian.org/debian bullseye/main amd64 python3-psutil amd64 5.8.0-1 [184 kB] Get: 325 http://deb.debian.org/debian bullseye/main amd64 python3-pulp all 1.6.0+dfsg1-5 [54.0 kB] Get: 326 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get: 327 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 328 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get: 329 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get: 330 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get: 331 http://deb.debian.org/debian bullseye/main amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5508 B] Get: 332 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 333 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 334 http://deb.debian.org/debian bullseye/main amd64 python3-ruamel.yaml.clib amd64 0.2.2-1+b2 [132 kB] Get: 335 http://deb.debian.org/debian bullseye/main amd64 python3-ruamel.yaml all 0.16.12-2 [110 kB] Get: 336 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get: 337 http://deb.debian.org/debian bullseye/main amd64 python3-tk amd64 3.9.2-1 [101 kB] Get: 338 http://deb.debian.org/debian bullseye/main amd64 python3-seaborn all 0.11.1-1 [206 kB] Get: 339 http://deb.debian.org/debian bullseye/main amd64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 340 http://deb.debian.org/debian bullseye/main amd64 sphinx-common all 3.4.3-2 [578 kB] Get: 341 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx all 3.4.3-2 [545 kB] Get: 342 http://deb.debian.org/debian bullseye/main amd64 python3-sqt amd64 0.8.0-4+b3 [119 kB] Get: 343 http://deb.debian.org/debian bullseye/main amd64 python3-toposort all 1.6-1 [7620 B] Get: 344 http://deb.debian.org/debian bullseye/main amd64 python3-wrapt amd64 1.12.1-4+b1 [39.3 kB] Get: 345 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get: 346 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get: 347 http://deb.debian.org/debian bullseye/main amd64 snakemake all 5.24.1-2 [6107 kB] Fetched 124 MB in 4s (28.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u2_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../9-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Setting up libjs-inherits (2.0.4-1) ... Setting up bsdextrautils (2.36.1-8+deb11u2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libdatrie1:amd64 (0.2.13-1) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libmagic1:amd64 (1:5.39-3+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up node-color-name (1.1.4+~1.1.1-1) ... Setting up libc-ares2:amd64 (1.17.1-1+deb11u3) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up liberror-perl (0.17029-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.40.0-2+deb11u1) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up node-sprintf-js (1.1.2+ds1-2) ... Setting up node-shebang-regex (3.0.0-1) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... 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Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up mailcap (3.69) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up node-is-buffer (2.0.5-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up node-is-plain-obj (3.0.0-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u12) ... Setting up libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up coinor-libcoinutils3v5 (2.11.4+repack1-1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up shared-mime-info (2.0-1) ... Setting up ucf (3.0043) ... Setting up git (1:2.30.2-1+deb11u2) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up xml-core (0.18+nmu1) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:amd64 (1.11-4) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up nodejs (12.22.12~dfsg-1~deb11u4) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up node-argparse (2.0.1-1) ... Setting up node-d3-path (1.0.9-2) ... Setting up node-he (1.2.0-1) ... Setting up node-clone (2.1.2-2) ... Setting up node-has-flag (4.0.0-1) ... Setting up dh-autoreconf (20) ... Setting up node-inherits (2.0.4-1) ... Setting up node-path-is-absolute (2.0.0-1) ... Setting up node-iconv-lite (0.5.1-3) ... Setting up node-safe-buffer (5.2.1+~cs2.1.2-1) ... Setting up node-d3-polygon (1.0.5-3) ... Setting up node-y18n (4.0.0-4) ... Setting up node-d3-quadtree (1.0.7-2) ... Setting up node-balanced-match (1.0.0-1) ... Setting up node-brace-expansion (2.0.0-1) ... Setting up libnotify4:amd64 (0.7.9-3) ... Setting up coinor-libclp1 (1.17.5+repack1-1) ... 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Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u2) ... Setting up node-locate-path (6.0.0-1) ... Setting up python3-roman (2.0.0-5) ... Setting up node-d3-drag (1.2.5-2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up node-rw (1.3.3-2) ... Setting up coinor-cbc (2.10.5+ds1-3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up node-ansi-styles (4.2.1-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up node-d3-scale (2.2.2-3) ... Setting up python3-cycler (0.10.0-3) ... Setting up node-strip-ansi (6.0.0-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1+deb11u1) ... Setting up python3-wrapt (1.12.1-4+b1) ... Setting up node-chalk (4.1.0-1) ... Setting up node-which (2.0.2+~cs1.3.2-1) ... Setting up node-lcid (3.1.1-1) ... Setting up node-d3-force (1.2.1-2) ... Setting up python3-toml (0.10.1-1) ... Setting up node-d3-contour (1.3.2-4) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-pyrsistent:amd64 (0.15.5-1+b3) ... Setting up node-inflight (1.0.6-1.1) ... Setting up node-glob-parent (5.1.1+~5.1.0-2) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-datrie:amd64 (0.8.2-1+b1) ... Setting up node-d3-dsv (1.1.1-5) ... Setting up node-anymatch (3.1.1+~2.2.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up node-d3-transition (1.3.2-3) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-smmap (4.0.0-1) ... Setting up node-string-width (4.2.0-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-toposort (1.6-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-configargparse (1.2.3-1) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up node-is-number (7.0.0-1.1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up node-end-of-stream (1.4.4-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up node-pump (3.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-pulp (1.6.0+dfsg1-5) ... /usr/lib/python3/dist-packages/pulp/pulp.py:700: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self /usr/lib/python3/dist-packages/pulp/pulp.py:720: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self Setting up python3-alabaster (0.7.8-1.1) ... Setting up node-d3-zoom (1.8.3-2) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.2-1+b2) ... Setting up node-find-up (5.0.0-1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-tk:amd64 (3.9.2-1) ... Setting up node-d3-fetch (1.2.0-1) ... Setting up node-util (0.10.3-4) ... Setting up python3-gitdb (4.0.5-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-xopen (1.1.0-1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up node-wrap-ansi (4.0.0-2) ... Setting up node-glob (7.1.6+~7.1.3-1) ... Setting up node-readdirp (3.5.0-2) ... Setting up python3-git (3.1.14-1) ... Setting up node-get-stream (6.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up node-assert (1.5.0-1) ... Setting up python3-ruamel.yaml (0.16.12-2) ... Setting up node-d3-brush (1.1.5-2) ... Setting up python3-traitlets (5.0.5-1) ... Setting up node-wide-align (1.1.3-1) ... Setting up python3-jupyter-core (4.7.1-1+deb11u1) ... Setting up node-cliui (4.1.0-2) ... Setting up python3-dnaio (0.5.0-1) ... Setting up node-to-regex-range (5.0.1-2) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up node-execa (4.1.0+dfsg+~cs19.3.6-5) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up node-d3 (5.16.0-4) ... Setting up node-os-locale (5.0.0-1) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-cutadapt (3.2-2) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up python3-pluggy (0.13.0-6) ... Setting up node-fill-range (7.0.1-2) ... Setting up node-yargs (15.3.1+repack-2) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-seaborn (0.11.1-1) ... Setting up python3-sqt (0.8.0-4+b3) ... Setting up python3-nbformat (5.1.2-1) ... Setting up node-braces (3.0.2+~3.0.0-1) ... Setting up node-chokidar (3.4.3-3) ... Setting up mocha (8.2.1+ds1+~cs29.4.27-3) ... Setting up node-graphlibrary (2.2.0+really2.1.8+dfsg-3) ... Setting up node-dagre-layout (0.8.8+really0.8.5+dfsg-4) ... Setting up node-dagre-d3-renderer (0.6.4+dfsg-3) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up snakemake (5.24.1-2) ... Setting up python3-sphinx (3.4.3-2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/igdiscover-0.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../igdiscover_0.11-3_source.changes dpkg-buildpackage: info: source package igdiscover dpkg-buildpackage: info: source version 0.11-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from igdiscover-0.11/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ fakeroot debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/igdiscover-0.11' dh_auto_clean pybuild --clean --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -rf .pytest_cache debian/python3-igdiscover make[1]: Leaving directory '/build/reproducible-path/igdiscover-0.11' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/igdiscover.substvars debian/igdiscover-doc.substvars debian/files rm -fr -- debian/igdiscover/ debian/tmp/ debian/igdiscover-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/igdiscover-0.11' dh_auto_build pybuild --build --test-pytest -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/utils.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/group.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/filter.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/plotalleles.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/rename.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/discover.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/germlinefilter.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/discoverj.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/count.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/parse.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/clonoquery.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/run.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/trie.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/__main__.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/config.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/dereplicate.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/merge.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/commonv.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/dbdiff.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/clonotypes.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/upstream.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/table.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/species.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/__init__.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/haplotype.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/union.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/multidiscover.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/cluster.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/init.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/igblast.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/errorplot.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/dendrogram.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/clusterplot.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/_version.py -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/igdiscover.yaml -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/Snakefile -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover copying igdiscover/empty.aux -> /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover UPDATING /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/_version.py set /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/_version.py to '0.11' PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -bhtml doc/ build/html # HTML generator Running Sphinx v3.4.3 making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [html]: targets for 9 source files that are out of date updating environment: [new config] 9 added, 0 changed, 0 removed reading sources... [ 11%] advanced reading sources... [ 22%] changes reading sources... [ 33%] develop reading sources... [ 44%] faq reading sources... [ 55%] guide reading sources... [ 66%] index reading sources... [ 77%] installation reading sources... [ 88%] manual-installation reading sources... [100%] testing looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 11%] advanced writing output... [ 22%] changes writing output... [ 33%] develop writing output... [ 44%] faq writing output... [ 55%] guide writing output... [ 66%] index writing output... [ 77%] installation writing output... [ 88%] manual-installation writing output... [100%] testing generating indices... genindex done writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -bman doc/ build/man # Manpage generator Running Sphinx v3.4.3 making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [new config] 9 added, 0 changed, 0 removed reading sources... [ 11%] advanced reading sources... [ 22%] changes reading sources... [ 33%] develop reading sources... [ 44%] faq reading sources... [ 55%] guide reading sources... [ 66%] index reading sources... [ 77%] installation reading sources... [ 88%] manual-installation reading sources... [100%] testing looking for now-outdated files... none found pickling environment... done checking consistency... done writing... igdiscover.1 { installation manual-installation testing guide faq advanced develop changes } done build succeeded, 1 warning. The manual pages are in build/man. make[1]: Leaving directory '/build/reproducible-path/igdiscover-0.11' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.9 I: pybuild base:232: cd /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build; python3.9 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/reproducible-path/igdiscover-0.11, configfile: setup.cfg collected 36 items tests/test_cluster.py .. [ 5%] tests/test_commands.py ..... [ 19%] tests/test_merger.py ............ [ 52%] tests/test_parse.py . [ 55%] tests/test_species.py ... [ 63%] tests/test_trie.py ..... [ 77%] tests/test_utils.py ........ [100%] ============================== 36 passed in 3.15s ============================== create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/igdiscover.substvars debian/igdiscover-doc.substvars rm -fr -- debian/.debhelper/generated/igdiscover/ debian/igdiscover/ debian/tmp/ debian/.debhelper/generated/igdiscover-doc/ debian/igdiscover-doc/ dh_installdirs -O--buildsystem=pybuild install -d debian/igdiscover/usr/bin dh_auto_install -O--buildsystem=pybuild install -d /build/reproducible-path/igdiscover-0.11/debian/tmp pybuild --install --test-pytest -i python{version} -p 3.9 --dest-dir /build/reproducible-path/igdiscover-0.11/debian/tmp I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover running install running build running build_py UPDATING /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/_version.py set /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/_version.py to '0.11' running install_lib creating /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover creating /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr creating /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib creating /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9 creating /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages creating /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/utils.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/group.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/filter.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/plotalleles.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/Snakefile -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/rename.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/discover.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/germlinefilter.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/discoverj.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/count.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/parse.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/clonoquery.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/run.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/trie.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/igdiscover.yaml -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__main__.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/empty.aux -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/config.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/dereplicate.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/merge.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/commonv.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/dbdiff.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/clonotypes.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/upstream.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/table.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/species.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__init__.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/haplotype.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/union.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/multidiscover.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/cluster.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/init.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/igblast.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/errorplot.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/dendrogram.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/clusterplot.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/_version.py -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover creating /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/utils.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/clonoquery.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/trie.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/igblast.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/cluster.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/rename.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/discoverj.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/upstream.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/union.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/__main__.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/config.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/dendrogram.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/count.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/_version.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/germlinefilter.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/discover.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/dbdiff.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/group.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/clonotypes.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/plotalleles.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/init.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/merge.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/dereplicate.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/filter.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/species.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/clusterplot.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/errorplot.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/run.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/commonv.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/haplotype.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/table.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ copying /build/reproducible-path/igdiscover-0.11/.pybuild/cpython3_3.9_igdiscover/build/igdiscover/__pycache__/parse.cpython-39.pyc -> /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__pycache__ byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/utils.py to utils.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/group.py to group.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/filter.py to filter.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/plotalleles.py to plotalleles.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/rename.py to rename.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/discover.py to discover.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/germlinefilter.py to germlinefilter.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/discoverj.py to discoverj.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/count.py to count.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/parse.py to parse.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/clonoquery.py to clonoquery.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/run.py to run.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/trie.py to trie.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__main__.py to __main__.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/config.py to config.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/dereplicate.py to dereplicate.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/merge.py to merge.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/commonv.py to commonv.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/dbdiff.py to dbdiff.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/clonotypes.py to clonotypes.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/upstream.py to upstream.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/table.py to table.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/species.py to species.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/haplotype.py to haplotype.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/union.py to union.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/multidiscover.py to multidiscover.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/cluster.py to cluster.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/init.py to init.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/igblast.py to igblast.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/errorplot.py to errorplot.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/dendrogram.py to dendrogram.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/clusterplot.py to clusterplot.cpython-39.pyc byte-compiling /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover/_version.py to _version.cpython-39.pyc running install_egg_info running egg_info creating igdiscover.egg-info writing igdiscover.egg-info/PKG-INFO writing dependency_links to igdiscover.egg-info/dependency_links.txt writing entry points to igdiscover.egg-info/entry_points.txt writing requirements to igdiscover.egg-info/requires.txt writing top-level names to igdiscover.egg-info/top_level.txt writing manifest file 'igdiscover.egg-info/SOURCES.txt' reading manifest file 'igdiscover.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'igdiscover.egg-info/SOURCES.txt' Copying igdiscover.egg-info to /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/lib/python3.9/dist-packages/igdiscover-0.11.egg-info Skipping SOURCES.txt running install_scripts Installing igdiscover script to /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/bin rm -f debian/igdiscover-doc.debhelper.log debian/igdiscover.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/igdiscover-0.11' mv /build/reproducible-path/igdiscover-0.11/debian/python3-igdiscover/usr/bin/* /build/reproducible-path/igdiscover-0.11/debian/igdiscover/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/igdiscover-0.11' dh_installdocs -O--buildsystem=pybuild install -d debian/igdiscover/usr/share/doc/igdiscover install -d debian/.debhelper/generated/igdiscover install -p -m0644 debian/copyright debian/igdiscover/usr/share/doc/igdiscover/copyright install -d debian/igdiscover-doc/usr/share/doc/igdiscover-doc install -d debian/.debhelper/generated/igdiscover-doc install -d debian/igdiscover-doc/usr/share/doc/igdiscover cd './build/html//..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/igdiscover-0.11/debian/igdiscover-doc/usr/share/doc/igdiscover chown -R 0:0 debian/igdiscover-doc/usr/share/doc chmod -R u\+rw,go=rX debian/igdiscover-doc/usr/share/doc install -p -m0644 debian/copyright debian/igdiscover-doc/usr/share/doc/igdiscover-doc/copyright install -d debian/igdiscover-doc/usr/share/doc-base/ install -p -m0644 debian/igdiscover-doc.doc-base debian/igdiscover-doc/usr/share/doc-base/igdiscover dh_sphinxdoc -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/doctools.js ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/underscore.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/jquery.js rm -rf debian/igdiscover-doc/usr/share/doc/igdiscover/html/.doctrees rm -f debian/igdiscover-doc/usr/share/doc/igdiscover/html/.buildinfo (grep -a -s -v sphinxdoc:Depends debian/igdiscover-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 2.0)") > debian/igdiscover-doc.substvars.new mv debian/igdiscover-doc.substvars.new debian/igdiscover-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/igdiscover-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0), libjs-sphinxdoc (>= 2.0)") > debian/igdiscover-doc.substvars.new mv debian/igdiscover-doc.substvars.new debian/igdiscover-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/igdiscover-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0), libjs-sphinxdoc (>= 1.8), libjs-sphinxdoc (>= 2.0)") > debian/igdiscover-doc.substvars.new mv debian/igdiscover-doc.substvars.new debian/igdiscover-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/igdiscover-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0), libjs-sphinxdoc (>= 1.8), libjs-sphinxdoc (>= 2.0), libjs-sphinxdoc (>= 2.4.3-5~)") > debian/igdiscover-doc.substvars.new mv debian/igdiscover-doc.substvars.new debian/igdiscover-doc.substvars (grep -a -s -v sphinxdoc:Built-Using debian/igdiscover-doc.substvars; echo "sphinxdoc:Built-Using=sphinx (= 3.4.3-2)") > debian/igdiscover-doc.substvars.new mv debian/igdiscover-doc.substvars.new debian/igdiscover-doc.substvars (grep -a -s -v sphinxdoc:Built-Using debian/igdiscover-doc.substvars; echo "sphinxdoc:Built-Using=alabaster (= 0.7.8-1.1), sphinx (= 3.4.3-2)") > debian/igdiscover-doc.substvars.new mv debian/igdiscover-doc.substvars.new debian/igdiscover-doc.substvars dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/igdiscover/usr/share/doc/igdiscover/changelog.Debian install -p -m0644 ./CHANGES.rst debian/igdiscover/usr/share/doc/igdiscover/changelog install -p -m0644 debian/changelog debian/igdiscover-doc/usr/share/doc/igdiscover-doc/changelog.Debian install -p -m0644 ./CHANGES.rst debian/igdiscover-doc/usr/share/doc/igdiscover-doc/changelog dh_installman -O--buildsystem=pybuild install -d debian/igdiscover/usr/share/man/man1/ install -p -m0644 ./build/man/igdiscover.1 debian/igdiscover/usr/share/man/man1/igdiscover.1 man-recode --to-code UTF-8 --suffix .dh-new debian/igdiscover/usr/share/man/man1/igdiscover.1 mv debian/igdiscover/usr/share/man/man1/igdiscover.1.dh-new debian/igdiscover/usr/share/man/man1/igdiscover.1 chmod 0644 -- debian/igdiscover/usr/share/man/man1/igdiscover.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:99: skipping package igdiscover-doc (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:152: source=igdiscover, binary packages=['igdiscover'] D: dh_python3 dh_python3:183: processing package igdiscover... D: dh_python3 fs:260: package igdiscover details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package igdiscover D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -d debian/igdiscover-doc/usr/share/lintian/overrides install -p -m0644 debian/igdiscover-doc.lintian-overrides debian/igdiscover-doc/usr/share/lintian/overrides/igdiscover-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/underscore.js ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/underscore.js rm -f debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/jquery.js ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/jquery.js rm -f debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/language_data.js rm -f debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/doctools.js rm -f debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/searchtools.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1567752478 as canonical time Normalizing debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/igdiscover-doc/usr/share/doc/igdiscover/html/_static/minus.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/igdiscover cd debian/igdiscover-doc chmod a-x usr/share/doc/igdiscover-doc/changelog usr/share/doc/igdiscover-doc/changelog.Debian chmod a-x usr/share/doc/igdiscover/changelog usr/share/doc/igdiscover/changelog.Debian usr/share/man/man1/igdiscover.1 gzip -9nf usr/share/doc/igdiscover-doc/changelog usr/share/doc/igdiscover-doc/changelog.Debian gzip -9nf usr/share/doc/igdiscover/changelog usr/share/doc/igdiscover/changelog.Debian usr/share/man/man1/igdiscover.1 cd '/build/reproducible-path/igdiscover-0.11' cd '/build/reproducible-path/igdiscover-0.11' dh_fixperms -O--buildsystem=pybuild find debian/igdiscover -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/igdiscover-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/igdiscover-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/igdiscover ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/igdiscover-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/igdiscover-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/igdiscover/usr/share/doc -type f -a -true -a ! -regex 'debian/igdiscover/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/igdiscover/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/igdiscover-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/igdiscover/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/igdiscover-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/igdiscover-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/igdiscover -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/igdiscover/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -d debian/igdiscover/DEBIAN install -d debian/igdiscover-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/igdiscover-doc.substvars echo misc:Pre-Depends= >> debian/igdiscover-doc.substvars dpkg-gencontrol -pigdiscover-doc -ldebian/changelog -Tdebian/igdiscover-doc.substvars -Pdebian/igdiscover-doc echo misc:Depends= >> debian/igdiscover.substvars echo misc:Pre-Depends= >> debian/igdiscover.substvars dpkg-gencontrol -pigdiscover -ldebian/changelog -Tdebian/igdiscover.substvars -Pdebian/igdiscover dpkg-gencontrol: warning: package igdiscover-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/igdiscover-doc/DEBIAN/control chown 0:0 -- debian/igdiscover-doc/DEBIAN/control chmod 0644 -- debian/igdiscover/DEBIAN/control chown 0:0 -- debian/igdiscover/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/igdiscover >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/igdiscover-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/igdiscover/DEBIAN/md5sums chown 0:0 -- debian/igdiscover/DEBIAN/md5sums chmod 0644 -- debian/igdiscover-doc/DEBIAN/md5sums chown 0:0 -- debian/igdiscover-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/igdiscover .. dpkg-deb --build debian/igdiscover-doc .. dpkg-deb: building package 'igdiscover-doc' in '../igdiscover-doc_0.11-3_all.deb'. dpkg-deb: building package 'igdiscover' in '../igdiscover_0.11-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../igdiscover_0.11-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from igdiscover-0.11/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/701254 and its subdirectories I: Current time: Mon Aug 11 12:04:35 -12 2025 I: pbuilder-time-stamp: 1754957075