I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 29 04:30:38 -12 2021 I: pbuilder-time-stamp: 1640795438 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [minc-tools_2.3.00+dfsg-6.dsc] I: copying [./minc-tools_2.3.00+dfsg.orig.tar.gz] I: copying [./minc-tools_2.3.00+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.MaqGrQjj/trustedkeys.kbx': General error gpgv: Signature made Tue Dec 8 00:22:53 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./minc-tools_2.3.00+dfsg-6.dsc dpkg-source: info: extracting minc-tools in minc-tools-2.3.00+dfsg dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_mincedit-sensible-viewer.diff dpkg-source: info: applying build-with-libnifti dpkg-source: info: applying hdf5-1.10-support.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix_manpages.patch dpkg-source: info: applying fix-gcc10-build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/383837/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1ea48534f5a74778bb298bc73f71ba12' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='383837' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.bzgL43ed8d/pbuilderrc_iPyk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.bzgL43ed8d/b1 --logfile b1/build.log minc-tools_2.3.00+dfsg-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 20 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/383837/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev (>= 2.3), libnifti2-dev (>= 3.0.1-4~), libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on libminc-dev (>= 2.3); however: Package libminc-dev is not installed. pbuilder-satisfydepends-dummy depends on libnifti2-dev (>= 3.0.1-4~); however: Package libnifti2-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libice6{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp24{a} libkpathsea6{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libminc-dev{a} libminc2-5.2.0{a} libncurses6{a} libnetcdf-dev{a} libnetcdf18{a} libnghttp2-14{a} libnifti2-2{a} libnifti2-dev{a} libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} libniftiio2{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libprocps8{a} libpsl5{a} libptexenc1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libznz-dev{a} libznz3{a} libzzip-0-13{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lmodern lynx pkg-config pkgconf psmisc publicsuffix shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 84.8 MB of archives. After unpacking 284 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 flex amd64 2.6.4-8 [440 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 tex-common all 6.16 [53.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 bison amd64 2:3.7.5+dfsg-1 [1104 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 hdf5-helpers amd64 1.10.6+repack-4+deb11u1 [40.4 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libaec-dev amd64 1.0.4-1 [18.7 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1 [543 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1 [311 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1 [772 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u1 [338 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libcurl4-gnutls-dev amd64 7.74.0-1.3+deb11u1 [429 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libhdf5-cpp-103-1 amd64 1.10.6+repack-4+deb11u1 [141 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libhdf5-fortran-102 amd64 1.10.6+repack-4+deb11u1 [105 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-4+deb11u1 [56.8 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-4+deb11u1 [37.7 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 libhdf5-dev amd64 1.10.6+repack-4+deb11u1 [2438 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 libkpathsea6 amd64 2020.20200327.54578-7 [172 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 libnetcdf18 amd64 1:4.7.4-1 [399 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 libminc2-5.2.0 amd64 2.4.03-3 [231 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 libnetcdf-dev amd64 1:4.7.4-1 [93.6 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 libminc-dev amd64 2.4.03-3 [73.8 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 libznz3 amd64 3.0.1-8 [13.9 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libnifti2-2 amd64 3.0.1-8 [74.3 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 libnifticdf2 amd64 3.0.1-8 [56.7 kB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 libnifticdf-dev amd64 3.0.1-8 [63.3 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 libniftiio2 amd64 3.0.1-8 [62.0 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 libniftiio-dev amd64 3.0.1-8 [71.2 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 libznz-dev amd64 3.0.1-8 [14.2 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 libnifti2-dev amd64 3.0.1-8 [98.9 kB] Get: 110 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 libptexenc1 amd64 2020.20200327.54578-7 [64.5 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 libsynctex2 amd64 2020.20200327.54578-7 [83.2 kB] Get: 115 http://deb.debian.org/debian bullseye/main amd64 libteckit0 amd64 2.5.10+ds1-3 [329 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 libtexlua53 amd64 2020.20200327.54578-7 [132 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 libtexluajit2 amd64 2020.20200327.54578-7 [267 kB] Get: 118 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get: 119 http://deb.debian.org/debian bullseye/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get: 120 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 libxaw7 amd64 2:1.0.13-1.1 [202 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 libzzip-0-13 amd64 0.13.62-3.3 [55.7 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 texlive-binaries amd64 2020.20200327.54578-7 [10.1 MB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 texlive-base all 2020.20210202-3 [20.8 MB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-base all 2020.20210202-3 [1120 kB] Fetched 84.8 MB in 1s (72.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../005-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../006-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package flex. Preparing to unpack .../007-flex_2.6.4-8_amd64.deb ... Unpacking flex (2.6.4-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package tex-common. Preparing to unpack .../010-tex-common_6.16_all.deb ... Unpacking tex-common (6.16) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../011-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../012-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../013-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../014-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../015-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../016-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../017-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package bison. Preparing to unpack .../022-bison_2%3a3.7.5+dfsg-1_amd64.deb ... Unpacking bison (2:3.7.5+dfsg-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../023-cmake-data_3.18.4-2+deb11u1_all.deb ... Unpacking cmake-data (3.18.4-2+deb11u1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../024-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../025-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../026-libarchive13_3.4.3-2+b1_amd64.deb ... Unpacking libarchive13:amd64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../027-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../028-libsasl2-modules-db_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../029-libsasl2-2_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../030-libldap-2.4-2_2.4.57+dfsg-3_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../031-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../032-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../033-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../034-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../035-libcurl4_7.74.0-1.3+deb11u1_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../036-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:amd64. Preparing to unpack .../037-libjsoncpp24_1.9.4-4_amd64.deb ... Unpacking libjsoncpp24:amd64 (1.9.4-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../038-librhash0_1.4.1-2_amd64.deb ... Unpacking librhash0:amd64 (1.4.1-2) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../039-libuv1_1.40.0-2_amd64.deb ... Unpacking libuv1:amd64 (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../040-cmake_3.18.4-2+deb11u1_amd64.deb ... Unpacking cmake (3.18.4-2+deb11u1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../041-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../042-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../043-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../044-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../045-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../046-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../047-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../048-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../049-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../050-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../051-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../052-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../053-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../054-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../055-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../056-fonts-lmodern_2.004.5-6.1_all.deb ... Unpacking fonts-lmodern (2.004.5-6.1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../057-hdf5-helpers_1.10.6+repack-4+deb11u1_amd64.deb ... Unpacking hdf5-helpers (1.10.6+repack-4+deb11u1) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../058-libaec0_1.0.4-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.4-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../059-libsz2_1.0.4-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.4-1) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../060-libaec-dev_1.0.4-1_amd64.deb ... Unpacking libaec-dev:amd64 (1.0.4-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../061-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../062-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../063-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../064-libfreetype6_2.10.4+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../065-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../066-libpixman-1-0_0.40.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.40.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../067-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../068-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../069-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../070-libx11-data_2%3a1.7.2-1_all.deb ... Unpacking libx11-data (2:1.7.2-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../071-libx11-6_2%3a1.7.2-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.2-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../072-libxcb-render0_1.14-3_amd64.deb ... Unpacking libxcb-render0:amd64 (1.14-3) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../073-libxcb-shm0_1.14-3_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.14-3) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../074-libxext6_2%3a1.3.3-1.1_amd64.deb ... 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Setting up libhdf5-dev (1.10.6+repack-4+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.7.4-1) ... Setting up texlive-binaries (2020.20200327.54578-7) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libminc-dev (2.4.03-3) ... Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-latex-base (2020.20210202-3) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-6_source.changes dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg' dh_auto_configure -- cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:24 (CMAKE_POLICY): The OLD behavior for policy CMP0026 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file sys/ndir.h - not found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file vfork.h -- Looking for include file vfork.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Found BISON: /usr/bin/bison (found version "3.7.5") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/depend make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/depend.internal". Scanning dependencies of target minccmp Scanning dependencies of target mincexpand Scanning dependencies of target mincwindow Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". Scanning dependencies of target mincdump Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal". Scanning dependencies of target minccopy Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". Scanning dependencies of target xfmconcat Scanning dependencies of target mincinfo [ 0%] [BISON][ncgentab] Building parser with bison 3.7.5 Scanning dependencies of target mincexample1 Scanning dependencies of target mincconcat Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 1%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build Scanning dependencies of target mincreshape make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build Scanning dependencies of target mincstats make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build Scanning dependencies of target mincmakescalar /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.ymake[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' : warning: 1 shift/reduce conflict [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 2%] [BISON][gram] Building parser with bison 3.7.5 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build [ 2%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o [ 2%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o [ 2%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o [ 3%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 4%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 6%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o [ 6%] Building C object progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.ycd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c : warning: 111 shift/reduce conflicts [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 7%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample1.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c [ 8%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccopy/minccopy.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c [ 9%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o [ 10%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o [ 11%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakescalar/mincmakescalar.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconvert.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconvert.dir/depend.internal". Scanning dependencies of target mincconvert make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 12%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconvert/mincconvert.c [ 13%] Linking C executable mincexpand cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= [ 14%] Linking C executable xfmconcat cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 [ 15%] Linking C executable minccopy /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". Scanning dependencies of target mincgen make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build [ 16%] Linking C executable mincwindow make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 [ 17%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c [ 18%] Linking C executable mincconvert cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconvert.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 19%] Linking C executable mincexample1 cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 20%] Linking C executable mincmakescalar cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 [ 21%] [FLEX][lex] Building scanner with flex 2.6.4 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 21%] Built target mincexpand cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= [ 22%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". Scanning dependencies of target mincsample make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 23%] Linking C executable mincinfo Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". Scanning dependencies of target minccalc cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 [ 24%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build [ 24%] Built target minccopy [ 25%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 26%] Linking C executable minccmp cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 27%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal". Scanning dependencies of target invert_raw_image cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build [ 27%] Built target xfmconcat /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 27%] Built target mincwindow make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= [ 27%] Built target mincconvert Scanning dependencies of target minclookup [ 27%] Built target mincexample1 make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend [ 28%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". Scanning dependencies of target mincaverage make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 28%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c Scanning dependencies of target mincblob make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". Scanning dependencies of target mincmakevector make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 29%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincaverage/mincaverage.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 30%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c [ 30%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c [ 30%] Built target mincmakescalar make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal". Scanning dependencies of target mincmath make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build [ 30%] Linking C executable mincconcat make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 [ 30%] Built target mincinfo In file included from /usr/include/string.h:495, from /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:10: In function 'strncpy', inlined from 'yyparse' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:345:13: make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c: In function 'yyparse': /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:342:20: note: length computed here 342 | size_t len = strlen(termstring); | ^~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= [ 31%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". Scanning dependencies of target mincmorph make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 32%] Linking C executable invert_raw_image cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 32%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c [ 32%] Built target minccmp make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= [ 33%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c [ 34%] Linking C executable mincmakevector cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal". Scanning dependencies of target minc_modify_header make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 34%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 35%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 35%] Built target mincconcat make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend [ 35%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= [ 35%] Linking C executable mincsample cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 36%] Linking C executable minclookup cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal". Scanning dependencies of target xfminvert make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build [ 36%] Built target invert_raw_image make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color= [ 37%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample2.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample2.dir/depend.internal". Scanning dependencies of target mincexample2 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 38%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 38%] Linking C executable mincblob [ 38%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 [ 39%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample2.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 40%] Linking C executable mincaverage cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 40%] Built target mincmakevector make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". Scanning dependencies of target mincresample make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 41%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c [ 42%] Linking C executable mincmath cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 [ 42%] Linking C executable minc_modify_header /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 43%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 44%] Linking C executable xfminvert cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 [ 44%] Built target minclookup make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= [ 45%] Linking C executable mincdump /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". Scanning dependencies of target minctoraw make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 46%] Linking C executable mincexample2 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 [ 47%] Linking C executable mincstats cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 47%] Built target mincaverage make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= [ 48%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/depend.internal". Scanning dependencies of target rawtominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 48%] Built target mincblob make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake --color= [ 49%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c [ 49%] Built target mincsample Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target mincextract make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 50%] Linking C executable mincreshape make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". [ 50%] Built target mincmath Scanning dependencies of target transformtags make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= [ 51%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincextract/mincextract.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 52%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o [ 52%] Built target minc_modify_header cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". Scanning dependencies of target voxeltoworld make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". Scanning dependencies of target worldtovoxel make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 53%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop': /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~ /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 266 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 55%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 56%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o [ 56%] Built target mincexample2 cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c [ 57%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 57%] Built target xfminvert make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal". [ 57%] Built target mincstats make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= Scanning dependencies of target acr_nema Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal". make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 57%] Built target mincdump Scanning dependencies of target mnc2nii make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 58%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o [ 58%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o [ 59%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal". Scanning dependencies of target ecattominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build [ 59%] Linking C executable minctoraw make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 60%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 [ 61%] Linking C executable transformtags cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 62%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o [ 63%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 64%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o [ 65%] Linking C executable voxeltoworld [ 65%] Built target mincreshape cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". Scanning dependencies of target minctoecat [ 65%] Linking C executable worldtovoxel make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1 [ 66%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". [ 67%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o Scanning dependencies of target nii2mnc cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 68%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c [ 69%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o [ 70%] Linking C executable mincextract cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 71%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c [ 71%] Built target minctoraw make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= [ 71%] Built target transformtags make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/depend.internal". Scanning dependencies of target upet2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 71%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c [ 72%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c [ 72%] Built target voxeltoworld [ 73%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c [ 74%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c [ 74%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c [ 74%] Built target worldtovoxel make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: note: in expansion of macro 'VERSIONSTR' 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c: In function 'upet_to_minc': /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro 'VERSIONSTR' 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ [ 74%] Linking C executable mnc2nii [ 74%] Built target mincextract cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 [ 75%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c [ 76%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c [ 77%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio [ 78%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/element.c [ 78%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c [ 78%] Linking C executable rawtominc [ 79%] Linking C executable nii2mnc cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 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-lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 80%] Linking C executable mincmorph cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 80%] Built target mnc2nii [ 81%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c [ 82%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 84%] Built target nii2mnc [ 84%] Built target rawtominc [ 85%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c [ 85%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o [ 86%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c [ 87%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:21: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~ /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:20: note: assuming directive output of 22 bytes 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c [ 87%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 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CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c [ 88%] Linking C executable upet2mnc cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 [ 89%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 89%] Linking C executable minccalc cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 [ 89%] Built target mincmorph [ 89%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 89%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target upet2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target minccalc [ 90%] Linking C static library libacr_nema.a cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake [ 91%] Linking C executable minctoecat cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o /usr/bin/ranlib libacr_nema.a make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 92%] Linking C executable mincgen cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 [ 92%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/depend.internal". Scanning dependencies of target dcm2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 93%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o [ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c [ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c [ 99%] Linking C executable ecattominc cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:168:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 168 | #define VERSION_STRING "2.01.02 built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro 'VERSION_STRING' 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_cdexport_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_ima_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1042:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1042 | fread(mfg_str, 1, IMA_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'use_the_files': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 980 | fscanf(fp, "%s", pipe_output_name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1084 | fread(data, 1, length, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target mincgen [ 99%] Built target minctoecat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target ecattominc [100%] Linking C executable mincresample cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [100%] Built target mincresample [100%] Linking C executable dcm2mnc cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf libacr_nema.a -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [100%] Built target dcm2mnc make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu Start 1: mincinfo-test Start 2: mincstats-test Start 3: mincaverage-test Start 4: minccalc-test Start 5: mincresample-test Start 6: mincreshape-test 1/6 Test #5: mincresample-test ................ Passed 0.07 sec 2/6 Test #3: mincaverage-test ................. Passed 0.09 sec 3/6 Test #2: mincstats-test ................... Passed 0.14 sec 4/6 Test #1: mincinfo-test .................... Passed 0.22 sec 5/6 Test #6: mincreshape-test ................. Passed 0.27 sec 6/6 Test #4: minccalc-test .................... Passed 0.35 sec 100% tests passed, 0 tests failed out of 6 Total Test time (real) = 0.36 sec make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccalc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincgen -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/invert_raw_image -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincaverage -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconcat -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconvert -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccopy -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdump -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincblob -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccmp -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincexpand -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincextract -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincinfo -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minclookup -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakescalar -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakevector -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmath -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minc_modify_header -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincresample -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincreshape -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincstats -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoraw -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincwindow -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmorph -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincsample -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/rawtominc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/voxeltoworld -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/worldtovoxel -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/transformtags -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfmconcat -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfminvert -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdiff -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincedit -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincheader -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincview -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minchistory -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincpik -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/voxeltoworld.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincaverage.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincblob.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccalc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccmp.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconcat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconvert.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccopy.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdiff.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdump.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincedit.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincexpand.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincextract.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincgen.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincheader.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincinfo.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minclookup.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakescalar.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakevector.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmath.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minc_modify_header.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincresample.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincreshape.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincsample.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincstats.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoraw.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/invert_raw_image.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincview.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincwindow.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/rawtominc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/transformtags.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfm2def.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmconcat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmflip.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfminvert.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/dcm2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/ecattominc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/upet2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoecat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mnc2nii.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/nii2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/vff2mnc.1 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg' cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share dh_link /usr/share/man/man1/voxeltoworld.1 \ /usr/share/man/man1/worldtovoxel.1 for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dwz: debian/minc-tools/usr/bin/dcm2mnc: DWARF compression not beneficial - old size 203203 new size 203568 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-6_amd64.deb'. dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../minc-tools_2.3.00+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/383837 and its subdirectories I: Current time: Wed Dec 29 04:31:40 -12 2021 I: pbuilder-time-stamp: 1640795500