I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 31 19:14:43 +14 2021 I: pbuilder-time-stamp: 1640927683 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [openmm_7.5.0+dfsg-1.dsc] I: copying [./openmm_7.5.0+dfsg.orig.tar.xz] I: copying [./openmm_7.5.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.uYHyVCCE/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 11 04:49:41 2020 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./openmm_7.5.0+dfsg-1.dsc dpkg-source: info: extracting openmm in openmm-7.5.0+dfsg dpkg-source: info: unpacking openmm_7.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking openmm_7.5.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-tests.patch dpkg-source: info: applying default_plugin_dir.diff dpkg-source: info: applying ignore-stochastic-test-failures.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/73363/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/73363/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/73363/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=5e3800eb3b0a4f8681c8afa234f99c58 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=73363 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CG1kbCAIZ5/pbuilderrc_lnxr --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CG1kbCAIZ5/b2 --logfile b2/build.log openmm_7.5.0+dfsg-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Dec 31 19:15 sh -> bash lrwxrwxrwx 1 root root 4 Dec 21 23:25 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/73363/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, cython3, debhelper-compat (= 13), dh-python, doxygen, ocl-icd-libopencl1, python3-dev:any, python3-numpy, python3-pytest, python3-scipy, swig dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on ocl-icd-libopencl1; however: Package ocl-icd-libopencl1 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev:any. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas3{a} libbrotli1{a} libbsd0{a} libclang-cpp11{a} libclang1-11{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp24{a} liblapack3{a} liblbfgsb0{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} libz3-4{a} m4{a} man-db{a} media-types{a} ocl-icd-libopencl1{a} po-debconf{a} procps{a} python3{a} python3-attr{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-scipy{a} python3-six{a} python3-toml{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig4.0{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix python3-pil python3-pygments wget 0 packages upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After unpacking 450 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libclang-cpp11 amd64 1:11.0.1-2 [9632 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libclang1-11 amd64 1:11.0.1-2 [5521 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 doxygen amd64 1.9.1-1 [4232 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2 [140 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get: 94 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 96 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 swig4.0 amd64 4.0.2-1 [1377 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 swig all 4.0.2-1 [330 kB] Fetched 108 MB in 7s (15.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... 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Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../45-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../46-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../47-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../48-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../49-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../50-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... 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Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../63-liblapack3_3.9.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-3) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../64-liblbfgsb0_3.0+dfsg.3-9_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Selecting previously unselected package libpython3.9:amd64. Preparing to unpack .../65-libpython3.9_3.9.2-1_amd64.deb ... Unpacking libpython3.9:amd64 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:amd64. Preparing to unpack .../66-libpython3.9-dev_3.9.2-1_amd64.deb ... Unpacking libpython3.9-dev:amd64 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../67-libpython3-dev_3.9.2-3_amd64.deb ... Unpacking libpython3-dev:amd64 (3.9.2-3) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../68-ocl-icd-libopencl1_2.2.14-2_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.14-2) ... Selecting previously unselected package python3-attr. Preparing to unpack .../69-python3-attr_20.3.0-1_all.deb ... Unpacking python3-attr (20.3.0-1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../70-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../71-zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../72-python3.9-dev_3.9.2-1_amd64.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../73-python3-dev_3.9.2-3_amd64.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-six. Preparing to unpack .../74-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../75-python3-more-itertools_4.2.0-3_all.deb ... Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../76-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../77-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../78-python3-iniconfig_1.1.1-1_all.deb ... Unpacking python3-iniconfig (1.1.1-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../79-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../80-python3-numpy_1%3a1.19.5-1_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../81-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../82-python3-packaging_20.9-2_all.deb ... Unpacking python3-packaging (20.9-2) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../83-python3-pluggy_0.13.0-6_all.deb ... Unpacking python3-pluggy (0.13.0-6) ... Selecting previously unselected package python3-py. Preparing to unpack .../84-python3-py_1.10.0-1_all.deb ... Unpacking python3-py (1.10.0-1) ... Selecting previously unselected package python3-toml. Preparing to unpack .../85-python3-toml_0.10.1-1_all.deb ... Unpacking python3-toml (0.10.1-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../86-python3-pytest_6.0.2-2_all.deb ... Unpacking python3-pytest (6.0.2-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../87-python3-scipy_1.6.0-2_amd64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package swig4.0. Preparing to unpack .../88-swig4.0_4.0.2-1_amd64.deb ... Unpacking swig4.0 (4.0.2-1) ... Selecting previously unselected package swig. Preparing to unpack .../89-swig_4.0.2-1_all.deb ... Unpacking swig (4.0.2-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:amd64 (4.8.10-1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.40.0-2) ... Setting up libexpat1-dev:amd64 (2.2.10-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up swig4.0 (4.0.2-1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up swig (4.0.2-1) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up libclang1-11 (1:11.0.1-2) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp11 (1:11.0.1-2) ... Setting up dh-autoreconf (20) ... Setting up doxygen (1.9.1-1) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-py (1.10.0-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Name or service not known I: Running cd /build/openmm-7.5.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../openmm_7.5.0+dfsg-1_source.changes dpkg-buildpackage: info: source package openmm dpkg-buildpackage: info: source version 7.5.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake # --with python3 dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake # --with python3 dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/openmm-7.5.0+dfsg' dh_auto_configure -- -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_C_FLAGS_RELEASE="-g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" -DCMAKE_CXX_FLAGS_RELEASE="-g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" -DCMAKE_SHARED_LINKER_FLAGS_RELEASE="-Wl,-z,relro -Wl,--as-needed" -DCMAKE_BUILD_TYPE=Release -DOPENMM_BUILD_AMOEBA_PLUGIN=ON -DOPENMM_BUILD_RPMD_PLUGIN=ON -DOPENMM_BUILD_DRUDE_PLUGIN=ON -DOPENMM_BUILD_SERIALIZATION_SUPPORT=ON -DOPENMM_BUILD_C_AND_FORTRAN_WRAPPERS=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON "-DCMAKE_C_FLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "-DCMAKE_CXX_FLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "-DCMAKE_SHARED_LINKER_FLAGS_RELEASE=-Wl,-z,relro -Wl,--as-needed" -DCMAKE_BUILD_TYPE=Release -DOPENMM_BUILD_AMOEBA_PLUGIN=ON -DOPENMM_BUILD_RPMD_PLUGIN=ON -DOPENMM_BUILD_DRUDE_PLUGIN=ON -DOPENMM_BUILD_SERIALIZATION_SUPPORT=ON -DOPENMM_BUILD_C_AND_FORTRAN_WRAPPERS=OFF .. -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.2") -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message): The package name passed to `find_package_handle_standard_args` (OPENCL) does not match the name of the calling package (OpenCL). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake_modules/FindOpenCL.cmake:86 (find_package_handle_standard_args) CMakeLists.txt:338 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find OPENCL (missing: OPENCL_LIBRARY OPENCL_INCLUDE_DIR) -- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen missing components: dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR OPENMM_BUILD_SERIALIZATION_SUPPORT -- Build files have been written to: /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/openmm-7.5.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/openmm-7.5.0+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openmm-7.5.0+dfsg -B/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/depend make -f wrappers/python/CMakeFiles/BuildModule.dir/build.make wrappers/python/CMakeFiles/BuildModule.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/wrappers/python /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/depend.internal". Scanning dependencies of target BuildModule make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f wrappers/python/CMakeFiles/BuildModule.dir/build.make wrappers/python/CMakeFiles/BuildModule.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/MANIFEST.in to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/MANIFEST.in [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/OpenMM.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/MANIFEST.in /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/MANIFEST.in cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/OpenMM.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputConfig.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputBuilder.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/doxygen/buildXML.sh to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/doxygen/buildXML.sh [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputConfig.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/doxygen/buildXML.sh /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/doxygen/buildXML.sh cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputBuilder.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/header.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/features.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/header.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/pythoncode.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/pythoncode.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/features.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/pythoncode.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/pythoncode.i [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/typemaps.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/typemaps.i [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/__init__.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/__init__.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/amd.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/amd.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberinpcrdfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberinpcrdfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/amd.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/amd.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/__init__.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberprmtopfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberprmtopfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberinpcrdfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberinpcrdfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberprmtopfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberprmtopfile.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmcrdfiles.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmcrdfiles.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmcrdfiles.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmcrdfiles.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmparameterset.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmparameterset.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmpsffile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmpsffile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmparameterset.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmparameterset.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmpsffile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmpsffile.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/checkpointreporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/checkpointreporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/checkpointreporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/checkpointreporter.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPC.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPE.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPE.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPE.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPE.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DMPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DMPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DMPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DMPC.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DOPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DOPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DOPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DOPC.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DPPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DPPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DPPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DPPC.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/absinth.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/absinth.xml [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPE.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPE.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPE.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPE.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/absinth.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/absinth.xml [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPC.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10.xml [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14-all.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14-all.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14-all.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14-all.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10_obc.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.OL15.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.OL15.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.OL15.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.OL15.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/RNA.OL3.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/RNA.OL3.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/lipid17.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/lipid17.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/RNA.OL3.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/RNA.OL3.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/lipid17.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/lipid17.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff14SB.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff14SB.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff14SB.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff14SB.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/spce.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/spce.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/spce.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/spce.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3pfb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3pfb.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pew.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pew.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pew.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pfb.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber96.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber96.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pfb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber96.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber96.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber96_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber96_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber96_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber96_obc.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99Test.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99Test.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99Test.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99Test.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbildn.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbildn.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sb.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbildn.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbildn.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbnmr.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbnmr.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbnmr.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbnmr.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amberfb15.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amberfb15.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amberfb15.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amberfb15.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009_gk.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009_gk.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009_gk.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009_gk.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013_gk.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013_gk.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013_gk.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013_gk.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/spce.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/spce.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-b.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-b.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/spce.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/spce.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-b.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-b.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip4p2005.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip4p2005.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip4pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip4pew.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip4p2005.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip4p2005.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip4pew.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip4pew.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5p.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5pew.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5pew.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5pew.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/water.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/water.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/water.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/water.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2013.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2013.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2013.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2013.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/hydrogens.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/hydrogens.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/hydrogens.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/hydrogens.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2019.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2019.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/iamoeba.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/iamoeba.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2019.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2019.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/residues.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/residues.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/iamoeba.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/iamoeba.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/pdbNames.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/pdbNames.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/pdbNames.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/pdbNames.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/residues.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/residues.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.pdb [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/swm4ndp.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/swm4ndp.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/swm4ndp.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/swm4ndp.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/test.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/test.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/test.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/test.pdb [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.pdb [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3pfb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3pfb.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.pdb [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pfb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pfb.xml [ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.pdb [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdfile.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.xml [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/desmonddmsfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/desmonddmsfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdfile.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdreporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdreporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdreporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdreporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/desmonddmsfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/desmonddmsfile.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/element.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/element.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacsgrofile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacsgrofile.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacstopfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacstopfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/element.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/element.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacsgrofile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacsgrofile.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/forcefield.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/forcefield.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacstopfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacstopfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/forcefield.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/forcefield.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/__init__.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/__init__.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/amber_file_parser.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/amber_file_parser.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/_charmmfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/_charmmfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/amber_file_parser.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/amber_file_parser.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/_charmmfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/_charmmfile.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/exceptions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/exceptions.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/topologyobjects.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/topologyobjects.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/exceptions.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/exceptions.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/topologyobjects.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/topologyobjects.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/compiled.pyx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/compiled.pyx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/compiled.pyx /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/compiled.pyx [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/customgbforces.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/customgbforces.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/customgbforces.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/customgbforces.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbstructure.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbstructure.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbstructure.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbstructure.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/__init__.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/__init__.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/__init__.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/singleton.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/singleton.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/singleton.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/singleton.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/unitcell.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/unitcell.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/unitcell.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/unitcell.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/metadynamics.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/metadynamics.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/metadynamics.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/metadynamics.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/modeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/modeller.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/modeller.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/modeller.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbfile.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbreporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbreporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbreporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbreporter.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbxfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbxfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbxfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbxfile.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulatedtempering.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulatedtempering.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulatedtempering.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulatedtempering.py [ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/statedatareporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/statedatareporter.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulation.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulation.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulation.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/statedatareporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/statedatareporter.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/topology.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/topology.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/topology.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/topology.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/vec3.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/vec3.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/mtsintegrator.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/mtsintegrator.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/vec3.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/vec3.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/mtsintegrator.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/mtsintegrator.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/testInstallation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/testInstallation.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/testInstallation.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/testInstallation.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/__init__.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/basedimension.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/basedimension.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/baseunit.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/baseunit.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/basedimension.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/basedimension.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/constants.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/constants.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/baseunit.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/baseunit.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/constants.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/constants.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/doctests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/doctests.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/mymatrix.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/mymatrix.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/doctests.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/doctests.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/mymatrix.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/mymatrix.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/quantity.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/quantity.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/prefix.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/prefix.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/standard_dimensions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/standard_dimensions.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/prefix.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/prefix.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/quantity.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/quantity.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/standard_dimensions.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/standard_dimensions.py [ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_definitions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_definitions.py [ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_math.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_math.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_definitions.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_definitions.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_math.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_math.py [ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_operators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_operators.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_operators.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_operators.py [ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberInpcrdFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberInpcrdFile.py [ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAPIUnits.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAPIUnits.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAPIUnits.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAPIUnits.py Scanning dependencies of target OpenMM make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/build [ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberPrmtopFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberPrmtopFile.py [ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestBytes.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestBytes.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberInpcrdFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberInpcrdFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberPrmtopFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberPrmtopFile.py [ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCharmmFiles.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestBytes.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestBytes.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCharmmFiles.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 16%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AndersenThermostat.cpp [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AndersenThermostatImpl.cpp [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCheckpointReporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCheckpointReporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/BrownianIntegrator.cpp [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDcdFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDcdFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMAPTorsionForce.cpp /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AssertionUtilities.cpp [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDesmondDMSFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDesmondDMSFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMAPTorsionForceImpl.cpp /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMMotionRemover.cpp [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestElement.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestElement.py [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestElement.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestElement.py /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMMotionRemoverImpl.cpp [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceField.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceField.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceField.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceField.py [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceGroups.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceGroups.py [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceGroups.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceGroups.py /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CompiledExpressionSet.cpp [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGenerators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGenerators.py /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CompoundIntegrator.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGenerators.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGenerators.py [ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Context.cpp [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsGroFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsGroFile.py [ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsTopFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsTopFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsTopFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsTopFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsGroFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsGroFile.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestIntegrators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestMetadynamics.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestIntegrators.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestMetadynamics.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestModeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestModeller.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestModeller.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestModeller.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestNumpyCompatibility.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestNumpyCompatibility.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPatches.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPatches.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPatches.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPatches.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbFile.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPickle.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPickle.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPickle.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPickle.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbxFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbxFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbxFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbxFile.py [ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ContextImpl.cpp [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulatedTempering.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulatedTempering.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulation.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulation.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulation.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSwigWrappers.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSwigWrappers.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSwigWrappers.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSwigWrappers.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestTopology.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestTopology.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestTopology.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestTopology.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnitCell.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnitCell.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnitCell.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnitCell.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnits.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnits.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnits.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnits.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestVec3.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestVec3.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestVec3.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestVec3.py [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/pytest.ini to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/pytest.ini cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/pytest.ini /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/pytest.ini [ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/1T2Y.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/1T2Y.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/1T2Y.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/1T2Y.pdb [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.top [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/4TVP-dmj_wat-ion.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/4TVP-dmj_wat-ion.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/4TVP-dmj_wat-ion.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/4TVP-dmj_wat-ion.psf [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.pdb [ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomAngleForce.cpp [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.psf [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.inpcrd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.inpcrd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.inpcrd [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.prmtop [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.inpcrd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.inpcrd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.inpcrd [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.prmtop [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.pdb [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.prm [ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.psf /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomAngleForceImpl.cpp [ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomBondForce.cpp [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.gro [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top [ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomBondForceImpl.cpp [ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml [ 24%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCVForce.cpp [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.crd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.parm7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.crd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd [ 24%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCVForceImpl.cpp [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.crd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.vpsf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.vpsf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.xpsf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.xpsf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala_drude.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala_drude.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb [ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml [ 26%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCentroidBondForce.cpp [ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms [ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.pdb [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.prmtop [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml [ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCentroidBondForceImpl.cpp [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml [ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCompoundBondForce.cpp [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb [ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCompoundBondForceImpl.cpp [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop [ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomExternalForce.cpp [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/altlocs.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/altlocs.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amber.ncrst to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amber.ncrst /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst [ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomExternalForceImpl.cpp [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amoeba-ion-in-water.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amoeba-ion-in-water.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_lig.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_lig.dms /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms [ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomGBForce.cpp [ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bnz.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different 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CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomGBForceImpl.cpp [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/envi.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/envi.str cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/envi.str /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/envi.str [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.rtf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.par to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.par /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.rtf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.crd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd [ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomHbondForce.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_box.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_box.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 [ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomHbondForceImpl.cpp [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels_box.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels_box.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels_box.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels_box.rst7 [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crdsonly.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crdsonly.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crdsonly.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crdsonly.rst7 [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/explicit.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/explicit.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/explicit.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/explicit.top [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.parm7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 [ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomIntegrator.cpp [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.rst7 [ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff_with_includes.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff_with_includes.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff_with_includes.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff_with_includes.xml [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/formaldehyde.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/formaldehyde.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/formaldehyde.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/formaldehyde.pdb [ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomIntegratorUtilities.cpp [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gaffwat.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gaffwat.parm7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gaffwat.parm7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gaffwat.parm7 [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gpcr.cif to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gpcr.cif /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/implicit.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/implicit.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/implicit.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/implicit.top [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/improper.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/improper.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/improper.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/improper.psf [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/insertions.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/insertions.pdbx /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.top [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.psf [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit-forces.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit-forces.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit.pdb [ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomManyParticleForce.cpp [ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomManyParticleForceImpl.cpp [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol-box.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol-box.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol-box.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol-box.pdb [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.pdb [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.psf [ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/multichain.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/multichain.pdbx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/multichain.pdbx /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/multichain.pdbx [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/nacl-water.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nacl-water.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/nacl-water.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nacl-water.pdb [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot.inp to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot.inp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot.inp /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot.inp [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot_with_mass.inp to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot_with_mass.inp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot_with_mass.inp /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot_with_mass.inp [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_cgenff.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_cgenff.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_cgenff.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_cgenff.prm [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_prot.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_prot.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/test_amber_ff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/test_amber_ff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tip5p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tip5p.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/top_all36_cgenff.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/top_all36_cgenff.rtf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf [ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomNonbondedForce.cpp [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_master_protein_2013e.str cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_master_protein_2013e.str [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_water_ions.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_water_ions.str cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_water_ions.str /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_water_ions.str [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.gro [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdbx /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.parm7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 [ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomNonbondedForceImpl.cpp [ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomTorsionForce.cpp [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water-box-216.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water-box-216.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop [ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm [ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf [ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateConstraints.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateConstraints.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateConstraints.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateConstraints.py [ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateModeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateModeller.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateModeller.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateModeller.py [ 36%] Parsing OpenMM header files with doxygen... cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/src/swig_doxygen/doxygen && /usr/bin/doxygen [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomTorsionForceImpl.cpp warning: Tag 'SYMBOL_CACHE_SIZE' at line 289 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 473 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 762 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 817 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1158 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1164 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1329 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1351 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/openmm-7.5.0+dfsg/openmmapi Searching for files in directory /build/openmm-7.5.0+dfsg/openmmapi/include Searching for files in directory /build/openmm-7.5.0+dfsg/openmmapi/include/openmm Searching for files in directory /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/internal Searching for files in directory /build/openmm-7.5.0+dfsg/openmmapi/src Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/internal Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm/internal Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/internal Searching for files in directory /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src Reading and parsing tag files Parsing files Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/AndersenThermostat.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/AndersenThermostat.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/BrownianIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/BrownianIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CMAPTorsionForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CMAPTorsionForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CMMotionRemover.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CMMotionRemover.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CompoundIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CompoundIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Context.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Context.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomAngleForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomAngleForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomBondForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomBondForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCentroidBondForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCentroidBondForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCompoundBondForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCompoundBondForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCVForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCVForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomExternalForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomExternalForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomGBForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomGBForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomHbondForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomHbondForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomManyParticleForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomManyParticleForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomNonbondedForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomNonbondedForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomTorsionForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomTorsionForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Force.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Force.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GayBerneForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GayBerneForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GBSAOBCForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GBSAOBCForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/HarmonicAngleForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/HarmonicAngleForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/HarmonicBondForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/HarmonicBondForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Integrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Integrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LangevinIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LangevinIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LocalEnergyMinimizer.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LocalEnergyMinimizer.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloBarostat.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloBarostat.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NoseHooverChain.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NoseHooverChain.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NoseHooverIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NoseHooverIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/OpenMMException.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/OpenMMException.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... Preprocessing /build/openmm-7.5.0+dfsg/op[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Force.cpp enmmapi/include/openmm/RBTorsionForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RBTorsionForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RMSDForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RMSDForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/State.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/State.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/System.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/System.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/TabulatedFunction.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/TabulatedFunction.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Units.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Units.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VariableLangevinIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VariableLangevinIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VariableVerletIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VariableVerletIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Vec3.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Vec3.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VerletIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VerletIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VirtualSite.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VirtualSite.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/OpenMM.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/OpenMM.h... Preprocessing /build/openmm-7.5.0+dfsg/olla/include/openmm/Platform.h... Parsing file /build/openmm-7.5.0+dfsg/olla/include/openmm/Platform.h... Preprocessing /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/SerializationNode.h... Parsing file /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/SerializationNode.h... Preprocessing /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/SerializationProxy.h... Parsing file /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/SerializationProxy.h... Preprocessing /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/XmlSerializer.h... Parsing file /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/XmlSerializer.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaStretchBendForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaStretchBendForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Preprocessing /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/OpenMMDrude.h... Parsing file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/OpenMMDrude.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ForceImpl.cpp names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/openmm-7.5.0+dfsg/olla/include/openmm/Platform.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/OpenMM.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/AndersenThermostat.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/BrownianIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CMAPTorsionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CMMotionRemover.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CompoundIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Context.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomAngleForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomBondForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCentroidBondForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCompoundBondForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomCVForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomExternalForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomGBForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomHbondForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomManyParticleForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomNonbondedForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/CustomTorsionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Force.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GayBerneForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GBSAOBCForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/HarmonicAngleForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/HarmonicBondForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Integrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LangevinIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/LocalEnergyMinimizer.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloBarostat.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NoseHooverChain.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NoseHooverIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/OpenMMException.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RBTorsionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RMSDForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/State.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/System.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/TabulatedFunction.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Units.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VariableLangevinIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VariableVerletIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Vec3.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VerletIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/VirtualSite.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaStretchBendForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/OpenMMDrude.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Generating code for file /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Generating code for file /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/SerializationNode.h... Generating code for file /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/SerializationProxy.h... Generating code for file /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/XmlSerializer.h... Generating file documentation... Generating docs for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Units.h... Generating page documentation... Generating docs for page deprecated... Generating group documentation...[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GBSAOBCForce.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GBSAOBCForceImpl.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GayBerneForce.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GayBerneForceImpl.cpp Generating class documentation... Generating namespace index... Generating docs for compound OpenMM::AndersenThermostat... Generating docs for compound OpenMM::BrownianIntegrator... Generating docs for compound OpenMM::CMAPTorsionForce... Generating docs for compound OpenMM::CMMotionRemover... Generating docs for compound OpenMM::CompoundIntegrator... Generating docs for compound OpenMM::Context... Generating docs for compound OpenMM::CustomAngleForce... Generating docs for compound OpenMM::CustomBondForce... Generating docs for compound OpenMM::CustomCentroidBondForce... Generating docs for compound OpenMM::CustomCompoundBondForce... Generating docs for compound OpenMM::CustomCVForce... Generating docs for compound OpenMM::CustomExternalForce... Generating docs for compound OpenMM::CustomGBForce... Generating docs for compound OpenMM::CustomHbondForce... Generating docs for compound OpenMM::CustomIntegrator... Generating docs for compound OpenMM::CustomManyParticleForce... Generating docs for compound OpenMM::CustomNonbondedForce... Generating docs for compound OpenMM::CustomTorsionForce... Generating docs for compound OpenMM::Force... Generating docs for compound OpenMM::GayBerneForce... Generating docs for compound OpenMM::GBSAOBCForce... Generating docs for compound OpenMM::HarmonicAngleForce... Generating docs for compound OpenMM::HarmonicBondForce... Generating docs for compound OpenMM::Integrator... Generating docs for compound OpenMM::LangevinIntegrator... Generating docs for compound OpenMM::LangevinMiddleIntegrator... Generating docs for compound OpenMM::LocalEnergyMinimizer... Generating docs for compound OpenMM::MonteCarloAnisotropicBarostat... Generating docs for compound OpenMM::MonteCarloBarostat... Generating docs for compound OpenMM::MonteCarloMembraneBarostat... Generating docs for compound OpenMM::NonbondedForce... Generating docs for compound OpenMM::NoseHooverChain... Generating docs for compound OpenMM::NoseHooverIntegrator... Generating docs for compound OpenMM::OpenMMException... Generating docs for compound OpenMM::PeriodicTorsionForce... Generating docs for compound OpenMM::RBTorsionForce... Generating docs for compound OpenMM::RMSDForce... Generating docs for compound OpenMM::State... Generating docs for compound OpenMM::System... Generating docs for compound OpenMM::TabulatedFunction... Generating docs for compound OpenMM::Continuous1DFunction... Generating docs for compound OpenMM::Continuous2DFunction... Generating docs for compound OpenMM::Continuous3DFunction... Generating docs for compound OpenMM::Discrete1DFunction... Generating docs for compound OpenMM::Discrete2DFunction... Generating docs for compound OpenMM::Discrete3DFunction... Generating docs for compound OpenMM::VariableLangevinIntegrator... Generating docs for compound OpenMM::VariableVerletIntegrator... Generating docs for compound OpenMM::Vec3... Generating docs for compound OpenMM::VerletIntegrator... Generating docs for compound OpenMM::VirtualSite... Generating docs for compound OpenMM::TwoParticleAverageSite... Generating docs for compound OpenMM::ThreeParticleAverageSite... Generating docs for compound OpenMM::OutOfPlaneSite... Generating docs for compound OpenMM::LocalCoordinatesSite... Generating docs for compound OpenMM::Platform... Generating docs for compound OpenMM::SerializationNode... Generating docs for compound OpenMM::SerializationProxy... Generating docs for compound OpenMM::XmlSerializer... Generating docs for compound OpenMM::AmoebaAngleForce... Generating docs for compound OpenMM::AmoebaBondForce... Generating docs for compound OpenMM::AmoebaGeneralizedKirkwoodForce... Generating docs for compound OpenMM::AmoebaInPlaneAngleForce... Generating docs for compound OpenMM::AmoebaMultipoleForce... Generating docs for compound OpenMM::AmoebaOutOfPlaneBendForce... Generating docs for compound OpenMM::AmoebaPiTorsionForce... Generating docs for compound OpenMM::AmoebaStretchBendForce... Generating docs for compound OpenMM::AmoebaTorsionTorsionForce... Generating docs for compound OpenMM::AmoebaVdwForce... Generating docs for compound OpenMM::AmoebaWcaDispersionForce... Generating docs for compound OpenMM::HippoNonbondedForce... Generating docs for compound OpenMM::RPMDIntegrator... Generating docs for compound OpenMM::RPMDMonteCarloBarostat... Generating docs for compound OpenMM::DrudeForce... Generating docs for compound OpenMM::DrudeIntegrator... Generating docs for compound OpenMM::DrudeLangevinIntegrator... Generating docs for compound OpenMM::DrudeNoseHooverIntegrator... Generating docs for compound OpenMM::DrudeSCFIntegrator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class OpenMM::AmoebaAngleForce Generating XML output for class OpenMM::AmoebaBondForce Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce Generating XML output for class OpenMM::AmoebaInPlaneAngleForce Generating XML output for class OpenMM::AmoebaMultipoleForce Generating XML output for class OpenMM::AmoebaOutOfPlaneBendForce Generating XML output for class OpenMM::AmoebaPiTorsionForce Generating XML output for class OpenMM::AmoebaStretchBendForce Generating XML output for class OpenMM::AmoebaTorsionTorsionForce Generating XML output for class OpenMM::AmoebaVdwForce Generating XML output for class OpenMM::AmoebaWcaDispersionForce Generating XML output for class OpenMM::AndersenThermostat Generating XML output for class OpenMM::AmoebaAngleForce::AngleInfo Generating XML output for class OpenMM::AmoebaInPlaneAngleForce::AngleInfo Generating XML output for class OpenMM::CustomAngleForce::AngleInfo Generating XML output for class OpenMM::HarmonicAngleForce::AngleInfo Generating XML output for class OpenMM::CustomAngleForce::AngleParameterInfo Generating XML output for class OpenMM::AmoebaBondForce::BondInfo Generating XML output for class OpenMM::CustomBondForce::BondInfo Generating XML output for class OpenMM::CustomCentroidBondForce::BondInfo Generating XML output for class OpenMM::CustomCompoundBondForce::BondInfo Generating XML output for class OpenMM::HarmonicBondForce::BondInfo Generating XML output for class OpenMM::CustomBondForce::BondParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::BondParameterInfo Generating XML output for class OpenMM::CustomCompoundBondForce::BondParameterInfo Generating XML output for class OpenMM::BrownianIntegrator Generating XML output for class OpenMM::CMAPTorsionForce Generating XML output for class OpenMM::CMAPTorsionForce::CMAPTorsionInfo Generating XML output for class OpenMM::CMMotionRemover Generating XML output for class OpenMM::CompoundIntegrator Generating XML output for class OpenMM::CustomGBForce::ComputationInfo Generating XML output for class OpenMM::CustomIntegrator::ComputationInfo Generating XML output for class OpenMM::Context Generating XML output for class OpenMM::Continuous1DFunction Generating XML output for class OpenMM::Continuous2DFunction Generating XML output for class OpenMM::Continuous3DFunction Generating XML output for class OpenMM::CustomAngleForce Generating XML output for class OpenMM::CustomBondForce Generating XML output for class OpenMM::CustomCentroidBondForce Generating XML output for class OpenMM::CustomCompoundBondForce Generating XML output for class OpenMM::CustomCVForce Generating XML output for class OpenMM::CustomExternalForce Generating XML output for class OpenMM::CustomGBForce Generating XML output for class OpenMM::CustomHbondForce Generating XML output for class OpenMM::CustomIntegrator Generating XML output for class OpenMM::CustomManyParticleForce Generating XML output for class OpenMM::CustomNonbondedForce Generating XML output for class[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicAngleForce.cpp OpenMM::CustomTorsionForce Generating XML output for class OpenMM::Discrete1DFunction Generating XML output for class OpenMM::Discrete2DFunction Generating XML output for class OpenMM::Discrete3DFunction Generating XML output for class OpenMM::DrudeForce Generating XML output for class OpenMM::DrudeIntegrator Generating XML output for class OpenMM::DrudeLangevinIntegrator Generating XML output for class OpenMM::DrudeNoseHooverIntegrator Generating XML output for class OpenMM::DrudeSCFIntegrator Generating XML output for class OpenMM::GayBerneForce::ExceptionInfo Generating XML output for class OpenMM::HippoNonbondedForce::ExceptionInfo Generating XML output for class OpenMM::NonbondedForce::ExceptionInfo Generating XML output for class OpenMM::NonbondedForce::ExceptionOffsetInfo Generating XML output for class OpenMM::CustomGBForce::ExclusionInfo Generating XML output for class OpenMM::CustomHbondForce::ExclusionInfo Generating XML output for class OpenMM::CustomManyParticleForce::ExclusionInfo Generating XML output for class OpenMM::CustomNonbondedForce::ExclusionInfo Generating XML output for class OpenMM::Force Generating XML output for class OpenMM::CustomCentroidBondForce::FunctionInfo Generating XML output for class OpenMM::CustomCompoundBondForce::FunctionInfo Generating XML output for class OpenMM::CustomCVForce::FunctionInfo Generating XML output for class OpenMM::CustomGBForce::FunctionInfo Generating XML output for class OpenMM::CustomHbondForce::FunctionInfo Generating XML output for class OpenMM::CustomIntegrator::FunctionInfo Generating XML output for class OpenMM::CustomManyParticleForce::FunctionInfo Generating XML output for class OpenMM::CustomNonbondedForce::FunctionInfo Generating XML output for class OpenMM::GayBerneForce Generating XML output for class OpenMM::GBSAOBCForce Generating XML output for class OpenMM::CustomAngleForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCompoundBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCVForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomExternalForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomGBForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomHbondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomManyParticleForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomNonbondedForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomTorsionForce::GlobalParameterInfo Generating XML output for class OpenMM::NonbondedForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::GroupInfo Generating XML output for class OpenMM::CustomHbondForce::GroupInfo Generating XML output for class OpenMM::HarmonicAngleForce Generating XML output for class OpenMM::HarmonicBondForce Generating XML output for class OpenMM::HippoNonbondedForce Generating XML output for class OpenMM::Integrator Generating XML output for class OpenMM::CustomNonbondedForce::InteractionGroupInfo Generating XML output for class OpenMM::LangevinIntegrator Generating XML output for class OpenMM::LangevinMiddleIntegrator Generating XML output for class OpenMM::LocalCoordinatesSite Generating XML output for class OpenMM::LocalEnergyMinimizer Generating XML output for class OpenMM::CMAPTorsionForce::MapInfo Generating XML output for class OpenMM::MonteCarloAnisotropicBarostat Generating XML output for class OpenMM::MonteCarloBarostat Generating XML output for class OpenMM::MonteCarloMembraneBarostat Generating XML output for class OpenMM::AmoebaMultipoleForce::MultipoleInfo Generating XML output for class OpenMM::NonbondedForce Generating XML output for class OpenMM::NoseHooverChain Generating XML output for class OpenMM::NoseHooverIntegrator Generating XML output for class OpenMM::OpenMMException Generating XML output for class OpenMM::Amoeba[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicAngleForceImpl.cpp OutOfPlaneBendForce::OutOfPlaneBendInfo Generating XML output for class OpenMM::OutOfPlaneSite Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce::ParticleInfo Generating XML output for class OpenMM::CustomExternalForce::ParticleInfo Generating XML output for class OpenMM::CustomGBForce::ParticleInfo Generating XML output for class OpenMM::CustomManyParticleForce::ParticleInfo Generating XML output for class OpenMM::CustomNonbondedForce::ParticleInfo Generating XML output for class OpenMM::DrudeForce::ParticleInfo Generating XML output for class OpenMM::GayBerneForce::ParticleInfo Generating XML output for class OpenMM::GBSAOBCForce::ParticleInfo Generating XML output for class OpenMM::HippoNonbondedForce::ParticleInfo Generating XML output for class OpenMM::NonbondedForce::ParticleInfo Generating XML output for class OpenMM::NonbondedForce::ParticleOffsetInfo Generating XML output for class OpenMM::CustomExternalForce::ParticleParameterInfo Generating XML output for class OpenMM::CustomManyParticleForce::ParticleParameterInfo Generating XML output for class OpenMM::AmoebaVdwForce::ParticleTypeInfo Generating XML output for class OpenMM::PeriodicTorsionForce Generating XML output for class OpenMM::PeriodicTorsionForce::PeriodicTorsionInfo Generating XML output for class OpenMM::CustomHbondForce::PerPairParameterInfo Generating XML output for class OpenMM::CustomGBForce::PerParticleParameterInfo Generating XML output for class OpenMM::CustomNonbondedForce::PerParticleParameterInfo Generating XML output for class OpenMM::AmoebaPiTorsionForce::PiTorsionInfo Generating XML output for class OpenMM::Platform Generating XML output for class OpenMM::RBTorsionForce Generating XML output for class OpenMM::RBTorsionForce::RBTorsionInfo Generating XML output for class OpenMM::RMSDForce Generating XML output for class OpenMM::RPMDIntegrator Generating XML output for class OpenMM::RPMDMonteCarloBarostat Generating XML output for class OpenMM::DrudeForce::ScreenedPairInfo Generating XML output for class OpenMM::SerializationNode Generating XML output for class OpenMM::SerializationProxy Generating XML output for class OpenMM::State Generating XML output for class OpenMM::State::StateBuilder Generating XML output for class OpenMM::AmoebaStretchBendForce::StretchBendInfo Generating XML output for class OpenMM::System Generating XML output for class OpenMM::TabulatedFunction Generating XML output for class OpenMM::ThreeParticleAverageSite Generating XML output for class OpenMM::CustomTorsionForce::TorsionInfo Generating XML output for class OpenMM::CustomTorsionForce::TorsionParameterInfo Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionGridInfo Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionInfo Generating XML output for class OpenMM::TwoParticleAverageSite Generating XML output for class OpenMM::AmoebaVdwForce::TypePairInfo Generating XML output for class OpenMM::CustomCVForce::VariableInfo Generating XML output for class OpenMM::VariableLangevinIntegrator Generating XML output for class OpenMM::VariableVerletIntegrator Generating XML output for class OpenMM::AmoebaVdwForce::VdwInfo Generating XML output for class OpenMM::Vec3 Generating XML output for class OpenMM::VerletIntegrator Generating XML output for class OpenMM::VirtualSite Generating XML output for class OpenMM::AmoebaWcaDispersionForce::WcaDispersionInfo Generating XML output for class OpenMM::XmlSerializer Generating XML output for namespace OpenMM Generating XML output for namespace std Generating XML output for file Platform.h Generating XML output for file OpenMM.h Generating XML output for file AndersenThermostat.h Generating XML output for file BrownianIntegrator.h Generating XML output for file CMAPTorsionForce.h Generating XML output for file CMMotionRemover.h Generating XML output for file CompoundIntegrator.h Generating XML output for file Context.h Generating XML output for file CustomAngleForce.h Generating XML output for file CustomBondForce.h Generating XML output for file CustomCentroidBondForce.h Generating XML output for file CustomCompoundBondForce.h Generating XML output for file CustomCVForce.h Generating XML output for file CustomExternalForce.h Generating XML output for file CustomGBForce.h Generating XML output for file CustomHbondForce.h Generating XML output for file CustomIntegrator.h Generating XML output for file CustomManyParticleForce.h Generating XML output for file CustomNonbondedForce.h Generating XML output for file CustomTorsionForce.h Generating XML output for file Force.h Generating XML output for file GayBerneForce.h Generating XML output for file GBSAOBCForce.h Generating XML output for file HarmonicAngleForce.h Generating XML output for file HarmonicBondForce.h Generating XML output for file Integrator.h Generating XML output for file LangevinIntegrator.h Generating XML output for file LangevinMiddleIntegrator.h Generating XML output for file LocalEnergyMinimizer.h Generating XML output for file MonteCarloAnisotropicBarostat.h Generating XML output for file MonteCarloBarostat.h Generating XML output for file MonteCarloMembraneBarostat.h Generating XML output for file NonbondedForce.h Generating XML output for file NoseHooverChain.h Generating XML output for file NoseHooverIntegrator.h Generating XML output for file OpenMMException.h Generating XML output for file PeriodicTorsionForce.h Generating XML output for file RBTorsionForce.h Generating XML output for file RMSDForce.h Generating XML output for file State.h Generating XML output for file System.h Generating XML output for file TabulatedFunction.h Generating XML output for file Units.h Generating XML output for file VariableLangevinIntegrator.h Generating XML output for file VariableVerletIntegrator.h Generating XML output for file Vec3.h Generating XML output for file VerletIntegrator.h Generating XML output for file VirtualSite.h Generating XML output for file AmoebaAngleForce.h Generating XML output for file AmoebaBondForce.h Generating XML output for file AmoebaGeneralizedKirkwoodForce.h Generating XML output for file AmoebaInPlaneAngleForce.h Generating XML output for file AmoebaMultipoleForce.h Generating XML output for file AmoebaOutOfPlaneBendForce.h Generating XML output for file AmoebaPiTorsionForce.h Generating XML output for file AmoebaStretchBendForce.h Generating XML output for file AmoebaTorsionTorsionForce.h Generating XML output for file AmoebaVdwForce.h Generating XML output for file AmoebaWcaDispersionForce.h Generating XML output for file HippoNonbondedForce.h Generating XML output for file OpenMMAmoeba.h Generating XML output for file DrudeForce.h Generating XML output for file DrudeIntegrator.h Generating XML output for file DrudeLangevinIntegrator.h Generating XML output for file DrudeNoseHooverIntegrator.h Generating XML output for file DrudeSCFIntegrator.h Generating XML output for file OpenMMDrude.h Generating XML output for file RPMDIntegrator.h Generating XML output for file RPMDMonteCarloBarostat.h Generating XML output for file SerializationNode.h Generating XML output for file SerializationProxy.h Generating XML output for file XmlSerializer.h Generating XML output for page deprecated Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/amoeba/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/drude/ Generate XML output for dir /build/openmm-7.5.0+dfsg/olla/include/ Generate XML output for dir /build/openmm-7.5.0+dfsg/serialization/include/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/ Generate XML output for dir /build/openmm-7.5.0+dfsg/openmmapi/include/ Generate XML output for dir /build/openmm-7.5.0+dfsg/olla/ Generate XML output for dir /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include/openmm/ Generate XML output for dir /build/openmm-7.5.0+dfsg/olla/include/openmm/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include/openmm/ Generate XML output for dir /build/openmm-7.5.0+dfsg/serialization/include/openmm/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/ Generate XML output for dir /build/openmm-7.5.0+dfsg/openmmapi/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/ Generate XML output for dir /build/openmm-7.5.0+dfsg/plugins/rpmd/ Generate XML output for dir /build/openmm-7.5.0+dfsg/serialization/ Generate XML output for dir /build/openmm-7.5.0+dfsg/serialization/include/openmm/serialization/ Running plantuml with JAVA... lookup cache used 3678/65536 hits=22901 misses=3916 finished... [ 38%] Creating OpenMM Python swig input files... cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen && /usr/bin/python3.9 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py -i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/src/swig_doxygen/doxygen/xml -c swigInputConfig.py -d OpenMM_docstring.i -o OpenMMSwigHeaders.i -a swig_lib/python/pythonprepend.i -z swig_lib/python/pythonappend.i -v 4.0.2 [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicBondForce.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicBondForceImpl.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Integrator.cpp Integrator.getStepSize() returns unit.picosecond VariableVerletIntegrator.getMaximumStepSize() returns unit.picosecond VariableLangevinIntegrator.getTemperature() returns unit.kelvin VariableLangevinIntegrator.getFriction() returns 1/unit.picosecond VariableLangevinIntegrator.getMaximumStepSize() returns unit.picosecond System.getParticleMass() returns unit.amu System.getConstraintParameters() returns particle1 as None System.getConstraintParameters() returns particle2 as None System.getConstraintParameters() returns distance as unit.nanometer System.getDefaultPeriodicBoxVectors() returns a as unit.nanometer System.getDefaultPeriodicBoxVectors() returns b as unit.nanometer System.getDefaultPeriodicBoxVectors() returns c as unit.nanometer State.getTime() returns unit.picosecond State.getKineticEnergy() returns unit.kilojoules_per_mole State.getPotentialEnergy() returns unit.kilojoules_per_mole State.getPeriodicBoxVectors() returns unit.nanometers State.getPeriodicBoxVolume() returns unit.nanometers**3 RPMDMonteCarloBarostat.getDefaultPressure() returns unit.bar RPMDIntegrator.getTemperature() returns unit.kelvin RPMDIntegrator.getFriction() returns 1/unit.picosecond RPMDIntegrator.getTotalEnergy() returns unit.kilojoules_per_mole RMSDForce.getReferencePositions() returns unit.nanometer RBTorsionForce.getTorsionParameters() returns particle1 as None RBTorsionForce.getTorsionParameters() returns particle2 as None RBTorsionForce.getTorsionParameters() returns particle3 as None RBTorsionForce.getTorsionParameters() returns particle4 as None RBTorsionForce.getTorsionParameters() returns c0 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c1 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c2 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c3 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c4 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c5 as unit.kilojoules_per_mole PeriodicTorsionForce.getTorsionParameters() returns particle1 as None PeriodicTorsionForce.getTorsionParameters() returns particle2 as None PeriodicTorsionForce.getTorsionParameters() returns particle3 as None PeriodicTorsionForce.getTorsionParameters() returns particle4 as None PeriodicTorsionForce.getTorsionParameters() returns periodicity as None PeriodicTorsionForce.getTorsionParameters() returns phase as unit.radian PeriodicTorsionForce.getTorsionParameters() returns k as unit.kilojoule_per_mole NoseHooverIntegrator.getTemperature() returns unit.kelvin NoseHooverIntegrator.getRelativeTemperature() returns unit.kelvin NoseHooverIntegrator.getCollisionFrequency() returns 1/unit.picosecond NoseHooverIntegrator.getRelativeCollisionFrequency() returns 1/unit.picosecond NoseHooverIntegrator.computeHeatBathEnergy() returns unit.kilojoules_per_mole NoseHooverIntegrator.getMaximumPairDistance() returns unit.nanometer NoseHooverChain.getTemperature() returns unit.kelvin NoseHooverChain.getRelativeTemperature() returns unit.kelvin NoseHooverChain.getCollisionFrequency() returns 1/unit.picosecond NoseHooverChain.getRelativeCollisionFrequency() returns 1/unit.picosecond NonbondedForce.getCutoffDistance() returns unit.nanometers NonbondedForce.getSwitchingDistance() returns unit.nanometers NonbondedForce.getPMEParameters() returns alpha as 1/unit.nanometer NonbondedForce.getPMEParameters() returns nx as None NonbondedForce.getPMEParameters() returns ny as None NonbondedForce.getPMEParameters() returns nz as None NonbondedForce.getParticleParameters() returns charge as unit.elementary_charge NonbondedForce.getParticleParameters() returns sigma as unit.nanometer NonbondedForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole NonbondedForce.getExceptionParameters() returns particle1 as None NonbondedForce.getExceptionParameters() returns particle2 as None NonbondedForce.getExceptionParameters() returns chargeProd as unit.elementary_charge*unit.elementary_charge NonbondedForce.getExceptionParameters() returns sigma as unit.nanometer NonbondedForce.getExceptionParameters() returns epsilon as unit.kilojoule_per_mole MonteCarloMembraneBarostat.getDefaultPressure() returns unit.bar MonteCarloMembraneBarostat.getDefaultSurfaceTension() returns unit.bar*unit.nanometer MonteCarloMembraneBarostat.getDefaultTemperature() returns unit.kelvin MonteCarloBarostat.getDefaultPressure() returns unit.bar MonteCarloBarostat.getDefaultTemperature() returns unit.kelvin MonteCarloAnisotropicBarostat.getDefaultPressure() returns unit.bar MonteCarloAnisotropicBarostat.getDefaultTemperature() returns unit.kelvin LocalCoordinatesSite.getLocalPosition() returns unit.nanometer LangevinMiddleIntegrator.getTemperature() returns unit.kelvin LangevinMiddleIntegrator.getFriction() returns 1/unit.picosecond LangevinIntegrator.getTemperature() returns unit.kelvin LangevinIntegrator.getFriction() returns 1/unit.picosecond HippoNonbondedForce.getCutoffDistance() returns unit.nanometers HippoNonbondedForce.getSwitchingDistance() returns unit.nanometers HippoNonbondedForce.getParticleParameters() returns charge as unit.elementary_charge HippoNonbondedForce.getParticleParameters() returns dipole as unit.elementary_charge*unit.nanometer HippoNonbondedForce.getParticleParameters() returns quadrupole as unit.elementary_charge*unit.nanometer**2 HippoNonbondedForce.getParticleParameters() returns coreCharge as unit.elementary_charge HippoNonbondedForce.getParticleParameters() returns alpha as None HippoNonbondedForce.getParticleParameters() returns epsilon as None HippoNonbondedForce.getParticleParameters() returns damping as None HippoNonbondedForce.getParticleParameters() returns c6 as None HippoNonbondedForce.getParticleParameters() returns pauliK as None HippoNonbondedForce.getParticleParameters() returns pauliQ as None HippoNonbondedForce.getParticleParameters() returns pauliAlpha as None HippoNonbondedForce.getParticleParameters() returns polarizability as None HippoNonbondedForce.getParticleParameters() returns axisType as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomZ as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomX as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomY as None HarmonicBondForce.getBondParameters() returns particle1 as None HarmonicBondForce.getBondParameters() returns particle2 as None HarmonicBondForce.getBondParameters() returns length as unit.nanometer HarmonicBondForce.getBondParameters() returns k as unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) HarmonicAngleForce.getAngleParameters() returns particle1 as None HarmonicAngleForce.getAngleParameters() returns particle2 as None HarmonicAngleForce.getAngleParameters() returns particle3 as None HarmonicAngleForce.getAngleParameters() returns angle as unit.radian HarmonicAngleForce.getAngleParameters() returns k as unit.kilojoule_per_mole/(unit.radian*unit.radian) GBSAOBCForce.getParticleParameters() returns charge as unit.elementary_charge GBSAOBCForce.getParticleParameters() returns radius as unit.nanometer GBSAOBCForce.getParticleParameters() returns scalingFactor as None GBSAOBCForce.getSurfaceAreaEnergy() returns unit.kilojoule_per_mole/unit.nanometer/unit.nanometer GBSAOBCForce.getCutoffDistance() returns unit.nanometers GayBerneForce.getCutoffDistance() returns unit.nanometers GayBerneForce.getSwitchingDistance() returns unit.nanometers GayBerneForce.getParticleParameters() returns sigma as unit.nanometer GayBerneForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole GayBerneForce.getParticleParameters() returns xparticle as None GayBerneForce.getParticleParameters() returns yparticle as None GayBerneForce.getParticleParameters() returns sx as unit.nanometer GayBerneForce.getParticleParameters() returns sy as unit.nanometer GayBerneForce.getParticleParameters() returns sz as unit.nanometer GayBerneForce.getParticleParameters() returns ex as None GayBerneForce.getParticleParameters() returns ey as None GayBerneForce.getParticleParameters() returns ez as None DrudeIntegrator.getDrudeTemperature() returns unit.kelvin DrudeIntegrator.getMaxDrudeDistance() returns unit.nanometer DrudeSCFIntegrator.getMinimizationErrorTolerance() returns unit.kilojoules_per_mole/unit.nanometer DrudeNoseHooverIntegrator.getMaxDrudeDistance() returns unit.nanometer DrudeNoseHooverIntegrator.getVelocitiesForTemperature() returns unit.nanometers / unit.picosecond DrudeLangevinIntegrator.getTemperature() returns unit.kelvin DrudeLangevinIntegrator.getFriction() returns 1/unit.picosecond DrudeLangevinIntegrator.getDrudeFriction() returns unit.picosecond**-1 DrudeForce.getParticleParameters() returns particle as None DrudeForce.getParticleParameters() returns particle1 as None DrudeForce.getParticleParameters() returns particle2 as None DrudeForce.getParticleParameters() returns particle3 as None DrudeForce.getParticleParameters() returns particle4 as None DrudeForce.getParticleParameters() returns charge as unit.elementary_charge DrudeForce.getParticleParameters() returns polarizability as unit.nanometer**3 DrudeForce.getParticleParameters() returns aniso12 as None DrudeForce.getParticleParameters() returns aniso34 as None CustomNonbondedForce.getCutoffDistance() returns unit.nanometers CustomNonbondedForce.getSwitchingDistance() returns unit.nanometers CustomManyParticleForce.getCutoffDistance() returns unit.nanometers CustomHbondForce.getCutoffDistance() returns unit.nanometers CustomGBForce.getCutoffDistance() returns unit.nanometers CompoundIntegrator.getStepSize() returns unit.picosecond CMAPTorsionForce.getMapParameters() returns size as None CMAPTorsionForce.getMapParameters() returns energy as unit.kilojoule_per_mole BrownianIntegrator.getTemperature() returns unit.kelvin BrownianIntegrator.getFriction() returns 1/unit.picosecond AndersenThermostat.getDefaultTemperature() returns unit.kelvin AndersenThermostat.getDefaultCollisionFrequency() returns 1/unit.picosecond AmoebaWcaDispersionForce.getParticleParameters() returns radius as unit.nanometer AmoebaWcaDispersionForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole AmoebaWcaDispersionForce.getEpso() returns unit.kilojoule_per_mole AmoebaWcaDispersionForce.getEpsh() returns unit.kilojoule_per_mole AmoebaWcaDispersionForce.getRmino() returns unit.nanometer AmoebaWcaDispersionForce.getRminh() returns unit.nanometer AmoebaWcaDispersionForce.getAwater() returns 1/(unit.nanometer*unit.nanometer*unit.nanometer) AmoebaWcaDispersionForce.getDispoff() returns unit.nanometer AmoebaVdwForce.getParticleParameters() returns parentIndex as None AmoebaVdwForce.getParticleParameters() returns sigma as unit.nanometer AmoebaVdwForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole AmoebaVdwForce.getParticleParameters() returns reductionFactor as None AmoebaVdwForce.getParticleParameters() returns isAlchemical as None AmoebaVdwForce.getParticleParameters() returns typeIndex as None AmoebaVdwForce.getParticleTypeParameters() returns sigma as None AmoebaVdwForce.getParticleTypeParameters() returns epsilon as unit.nanometer AmoebaVdwForce.getTypePairParameters() returns type1 as None AmoebaVdwForce.getTypePairParameters() returns type2 as None AmoebaVdwForce.getTypePairParameters() returns sigma as None AmoebaVdwForce.getTypePairParameters() returns epsilon as unit.nanometer AmoebaVdwForce.getCutoffDistance() returns unit.nanometers AmoebaVdwForce.getCutoff() returns unit.nanometer AmoebaStretchBendForce.getStretchBendParameters() returns particle1 as None AmoebaStretchBendForce.getStretchBendParameters() returns particle2 as None AmoebaStretchBendForce.getStretchBendParameters() returns particle3 as None AmoebaStretchBendForce.getStretchBendParameters() returns lengthAB as unit.nanometer AmoebaStretchBendForce.getStretchBendParameters() returns lengthCB as unit.nanometer AmoebaStretchBendForce.getStretchBendParameters() returns angle as unit.radian AmoebaStretchBendForce.getStretchBendParameters() returns k1 as unit.kilojoule_per_mole/unit.nanometer/unit.radian AmoebaStretchBendForce.getStretchBendParameters() returns k2 as unit.kilojoule_per_mole/unit.nanometer/unit.radian AmoebaPiTorsionForce.getPiTorsionParameters() returns particle1 as None AmoebaPiTorsionForce.getPiTorsionParameters() returns particle2 as None AmoebaPiTorsionForce.getPiTorsionParameters() returns particle3 as None AmoebaPiTorsionForce.getPiTorsionParameters() returns particle4 as None AmoebaPiTorsionForce.getPiTorsionParameters() returns particle5 as None AmoebaPiTorsionForce.getPiTorsionParameters() returns particle6 as None AmoebaPiTorsionForce.getPiTorsionParameters() returns k as unit.kilojoule_per_mole AmoebaOutOfPlaneBendForce.getAmoebaGlobalOutOfPlaneBendCubic() returns 1/unit.radian AmoebaOutOfPlaneBendForce.getAmoebaGlobalOutOfPlaneBendQuartic() returns 1/unit.radian**2 AmoebaOutOfPlaneBendForce.getAmoebaGlobalOutOfPlaneBendPentic() returns 1/unit.radian**3 AmoebaOutOfPlaneBendForce.getAmoebaGlobalOutOfPlaneBendSextic() returns 1/unit.radian**4 AmoebaOutOfPlaneBendForce.getOutOfPlaneBendParameters() returns particle1 as None AmoebaOutOfPlaneBendForce.getOutOfPlaneBendParameters() returns particle2 as None AmoebaOutOfPlaneBendForce.getOutOfPlaneBendParameters() returns particle3 as None AmoebaOutOfPlaneBendForce.getOutOfPlaneBendParameters() returns particle4 as None AmoebaOutOfPlaneBendForce.getOutOfPlaneBendParameters() returns k as unit.kilojoule_per_mole/unit.radians**2 AmoebaMultipoleForce.getCutoffDistance() returns unit.nanometer AmoebaMultipoleForce.getAEwald() returns 1/unit.nanometer AmoebaMultipoleForce.getMultipoleParameters() returns charge as unit.elementary_charge AmoebaMultipoleForce.getMultipoleParameters() returns molecularDipole as unit.elementary_charge*unit.nanometer AmoebaMultipoleForce.getMultipoleParameters() returns molecularQuadrupole as unit.elementary_charge*unit.nanometer**2 AmoebaMultipoleForce.getMultipoleParameters() returns axisType as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomZ as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomX as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomY as None AmoebaMultipoleForce.getMultipoleParameters() returns thole as None AmoebaMultipoleForce.getMultipoleParameters() returns dampingFactor as None AmoebaMultipoleForce.getMultipoleParameters() returns polarity as unit.nanometer**3 AmoebaInPlaneAngleForce.getAmoebaGlobalInPlaneAngleCubic() returns 1/unit.radian AmoebaInPlaneAngleForce.getAmoebaGlobalInPlaneAngleQuartic() returns 1/unit.radian**2 AmoebaInPlaneAngleForce.getAmoebaGlobalInPlaneAnglePentic() returns 1/unit.radian**3 AmoebaInPlaneAngleForce.getAmoebaGlobalInPlaneAngleSextic() returns 1/unit.radian**4 AmoebaInPlaneAngleForce.getAngleParameters() returns particle1 as None AmoebaInPlaneAngleForce.getAngleParameters() returns particle2 as None AmoebaInPlaneAngleForce.getAngleParameters() returns particle3 as None AmoebaInPlaneAngleForce.getAngleParameters() returns particle4 as None AmoebaInPlaneAngleForce.getAngleParameters() returns length as unit.radian AmoebaInPlaneAngleForce.getAngleParameters() returns quadraticK as unit.kilojoule_per_mole/(unit.radian*unit.radian) AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns charge as unit.elementary_charge AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns radius as unit.nanometer AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns scalingFactor as None AmoebaGeneralizedKirkwoodForce.getProbeRadius() returns unit.nanometer AmoebaGeneralizedKirkwoodForce.getSurfaceAreaFactor() returns unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) AmoebaBondForce.getAmoebaGlobalBondCubic() returns 1/unit.nanometer AmoebaBondForce.getAmoebaGlobalBondQuartic() returns 1/unit.nanometer**2 AmoebaBondForce.getBondParameters() returns particle1 as None AmoebaBondForce.getBondParameters() returns particle2 as None AmoebaBondForce.getBondParameters() returns length as unit.nanometer AmoebaBondForce.getBondParameters() returns quadraticK as unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) AmoebaAngleForce.getAmoebaGlobalAngleCubic() returns 1/unit.radian AmoebaAngleForce.getAmoebaGlobalAngleQuartic() returns 1/unit.radian**2 AmoebaAngleForce.getAmoebaGlobalAnglePentic() returns 1/unit.radian**3 AmoebaAngleForce.getAmoebaGlobalAngleSextic() returns 1/unit.radian**4 AmoebaAngleForce.getAngleParameters() returns particle1 as None AmoebaAngleForce.getAngleParameters() returns particle2 as None AmoebaAngleForce.getAngleParameters() returns particle3 as None AmoebaAngleForce.getAngleParameters() returns length as unit.degree AmoebaAngleForce.getAngleParameters() returns quadraticK as unit.kilojoule_per_mole/(unit.radian*unit.radian) [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LangevinIntegrator.cpp [ 38%] Creating OpenMM Python module sources with swig... cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen && /usr/bin/swig -python -c++ -outdir /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm -o OpenMMSwig.cxx OpenMM.i [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LangevinMiddleIntegrator.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LocalEnergyMinimizer.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloAnisotropicBarostat.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloBarostat.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloBarostatImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloMembraneBarostat.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NonbondedForce.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NonbondedForceImpl.cpp OpenMMSwigHeaders.i:2461: Warning 314: 'None' is a python keyword, renaming to '_None' [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NoseHooverChain.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NoseHooverIntegrator.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/OSRngSeed.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/PeriodicTorsionForce.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/PeriodicTorsionForceImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RBTorsionForce.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RBTorsionForceImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RMSDForce.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RMSDForceImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/SplineFitter.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/SplineFitter.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/SplineFitter.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/State.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/State.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/State.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/System.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/System.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/System.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/TabulatedFunction.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/TabulatedFunction.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/TabulatedFunction.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ThreadPool.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VariableLangevinIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VariableLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VariableLangevinIntegrator.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VariableVerletIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VariableVerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VariableVerletIntegrator.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VectorExpression.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VectorExpression.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VectorExpression.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VerletIntegrator.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VirtualSite.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/Kernel.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/KernelImpl.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/Platform.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_factorization.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_order.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_solver.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_solver.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_solver.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/CompiledExpression.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/CompiledExpression.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/CompiledExpression.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ExpressionProgram.cpp OpenMMSwigHeaders.i:585: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:586: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:587: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ExpressionTreeNode.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o OpenMMSwigHeaders.i:613: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:614: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:615: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/Operation.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ParsedExpression.cpp OpenMMSwigHeaders.i:635: Warning 453: Can't apply (OpenMM::SerializationNode &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/Parser.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o OpenMMSwigHeaders.i:722: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DHAVE_SSE2=1 -o CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/sfmt/src/SFMT.cpp OpenMMSwigHeaders.i:756: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lbfgs/src/lbfgs.cpp OpenMMSwigHeaders.i:785: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:786: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:815: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/hilbert/src/hilbert.cpp OpenMMSwigHeaders.i:1008: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/csha1/src/SHA1.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceKernelFactory.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceKernels.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferencePlatform.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceTabulatedFunction.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceTabulatedFunction.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceTabulatedFunction.cpp OpenMMSwigHeaders.i:1259: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1262: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1265: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1287: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1312: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1349: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ObcParameters.cpp OpenMMSwigHeaders.i:1409: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1442: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp OpenMMSwigHeaders.i:1501: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1583: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1667: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp OpenMMSwigHeaders.i:1733: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp OpenMMSwigHeaders.i:1768: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1771: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. ./swig_lib/python/extend.i:372: Warning 509: Overloaded method OpenMM::CustomIntegrator::getPerDofVariable(int) const effectively ignored, OpenMMSwigHeaders.i:1769: Warning 509: as it is shadowed by OpenMM::CustomIntegrator::getPerDofVariable(int,std::vector< Vec3,std::allocator< Vec3 > > &) const. [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp OpenMMSwigHeaders.i:1883: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1971: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2001: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2033: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2038: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2041: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2093: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp OpenMMSwigHeaders.i:2143: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2179: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2217: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2381: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2428: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2531: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2590: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2619: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp OpenMMSwigHeaders.i:2652: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp OpenMMSwigHeaders.i:2764: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2767: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2770: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2776: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2781: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2815: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2846: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2872: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2905: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 46%] Built target BuildModule [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCVForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCVForce.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomTorsionIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomTorsionIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomTorsionIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceDynamics.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceForce.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceGayBerneForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceGayBerneForce.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceHarmonicBondIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceHarmonicBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceHarmonicBondIxn.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceLJCoulomb14.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceLJCoulomb14.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceLJCoulomb14.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceLangevinMiddleDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceLangevinMiddleDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceLangevinMiddleDynamics.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceLincsAlgorithm.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceLincsAlgorithm.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceLincsAlgorithm.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceNoseHooverChain.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceNoseHooverChain.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceNoseHooverChain.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceNoseHooverDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceNoseHooverDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceNoseHooverDynamics.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceObc.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceObc.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceObc.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferencePME.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferencePME.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferencePME.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferencePairIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include 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-DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferencePairIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferencePairIxn.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceProperDihedralBond.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceProperDihedralBond.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceProperDihedralBond.cpp [ 48%] Building CXX object 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-I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceRMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceRMSDForce.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceRbDihedralBond.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceRbDihedralBond.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceRbDihedralBond.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include 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CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include 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-I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceVariableStochasticDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceVariableStochasticDynamics.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceVariableVerletDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceVariableVerletDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceVariableVerletDynamics.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceVerletDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include 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CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceVerletDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceVerletDynamics.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceVirtualSites.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include 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-I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/SimTKOpenMMUtilities.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/SimTKOpenMMUtilities.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/fftpack.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/fftpack.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/fftpack.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/AndersenThermostatProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/AndersenThermostatProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/AndersenThermostatProxy.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/BrownianIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/BrownianIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/BrownianIntegratorProxy.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CMAPTorsionForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CMAPTorsionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CMAPTorsionForceProxy.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CMMotionRemoverProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CMMotionRemoverProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CMMotionRemoverProxy.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CompoundIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CompoundIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CompoundIntegratorProxy.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomAngleForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomAngleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomAngleForceProxy.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomBondForceProxy.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomCVForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomCVForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomCVForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomCentroidBondForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomCentroidBondForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomCentroidBondForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomCompoundBondForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomCompoundBondForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomCompoundBondForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomExternalForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomExternalForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomExternalForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomGBForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomGBForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomGBForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomHbondForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomHbondForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomHbondForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomIntegratorProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomManyParticleForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomManyParticleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomManyParticleForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomNonbondedForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomNonbondedForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomNonbondedForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomTorsionForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/CustomTorsionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/CustomTorsionForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/GBSAOBCForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/GBSAOBCForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/GBSAOBCForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/GayBerneForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/GayBerneForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/GayBerneForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/HarmonicAngleForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/HarmonicAngleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/HarmonicAngleForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/HarmonicBondForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/HarmonicBondForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/HarmonicBondForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/LangevinIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/LangevinIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/LangevinIntegratorProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/LangevinMiddleIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/LangevinMiddleIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/LangevinMiddleIntegratorProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/MonteCarloAnisotropicBarostatProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/MonteCarloAnisotropicBarostatProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/MonteCarloAnisotropicBarostatProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/MonteCarloBarostatProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/MonteCarloBarostatProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/MonteCarloBarostatProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/MonteCarloMembraneBarostatProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/MonteCarloMembraneBarostatProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/MonteCarloMembraneBarostatProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/NonbondedForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/NonbondedForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/NonbondedForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/NoseHooverIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/NoseHooverIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/NoseHooverIntegratorProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/PeriodicTorsionForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/PeriodicTorsionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/PeriodicTorsionForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/RBTorsionForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/RMSDForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SerializationNode.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/SerializationNode.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/SerializationNode.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SerializationProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/SerializationProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/SerializationProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SerializationProxyRegistration.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/SerializationProxyRegistration.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/SerializationProxyRegistration.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/StateProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SystemProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/SystemProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/SystemProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/TabulatedFunctionProxies.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/VariableLangevinIntegratorProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/VariableVerletIntegratorProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/VerletIntegratorProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/XmlSerializer.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp: In function 'double strtod2(const char*, char**)': /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp:2650:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2650 | if (match(&s,"nf")) { | ^~~~ /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp:2652:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2652 | if (!match(&s,"inity")) | ^~~~~~~ /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp:2661:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2661 | if (match(&s, "an")) { | ^~~~ /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp: In function 'char* dtoa(double, int, int, int*, int*, char**)': /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp:3725:21: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3725 | return nrv_alloc("Infinity", rve, 8); | ^~~~~~~~~~ /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp:3727:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3727 | return nrv_alloc("NaN", rve, 3); | ^~~~~ /build/openmm-7.5.0+dfsg/serialization/src/dtoa.cpp:3735:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3735 | return nrv_alloc("0", rve, 1); | ^~~ [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -o CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/src/g_fmt.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/irrxml/src/irrXML.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/irrxml/src/irrXML.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/irrxml/src/irrXML.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/vecmath/src/vecmath.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/vecmath/src/vecmath.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/vecmath/src/vecmath.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/arch.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/arch.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/arch.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/assembler.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codebuilder.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codebuilder.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/codebuilder.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codecompiler.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codecompiler.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/codecompiler.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeemitter.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeemitter.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/codeemitter.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeholder.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeholder.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/codeholder.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/constpool.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/constpool.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/constpool.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/cpuinfo.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/cpuinfo.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/cpuinfo.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/func.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/func.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/func.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/globals.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/globals.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/globals.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/inst.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/inst.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/inst.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/logging.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/logging.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/logging.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/operand.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/operand.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/operand.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/osutils.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/osutils.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/osutils.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/regalloc.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/regalloc.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/regalloc.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/runtime.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/runtime.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/runtime.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/string.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/string.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/string.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/utils.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/utils.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/utils.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/vmem.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/vmem.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/vmem.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/zone.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/zone.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/zone.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86assembler.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86assembler.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/x86/x86assembler.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86builder.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86builder.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/x86/x86builder.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86compiler.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86compiler.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/x86/x86compiler.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86inst.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86inst.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/x86/x86inst.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86instimpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86instimpl.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/x86/x86instimpl.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86internal.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86internal.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/x86/x86internal.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86logging.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86logging.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/x86/x86logging.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86operand.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit 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CMakeFiles/OpenMM.dir/libraries/asmjit/base/arch.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codebuilder.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codecompiler.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeemitter.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeholder.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/constpool.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/cpuinfo.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/func.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/globals.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/inst.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/logging.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/operand.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/osutils.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/regalloc.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/runtime.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/string.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/utils.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/vmem.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/base/zone.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86assembler.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86builder.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86compiler.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86inst.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86instimpl.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86internal.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86logging.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86operand.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86operand_regs.cpp.o CMakeFiles/OpenMM.dir/libraries/asmjit/x86/x86regalloc.cpp.o -ldl -lpthread /usr/bin/cmake -E cmake_symlink_library libOpenMM.so.7.5 libOpenMM.so.7.5 libOpenMM.so make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 59%] Built target OpenMM make -f platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend make -f platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/depend make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/depend.internal". make -f platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/depend.internal". make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend Scanning dependencies of target TestReferenceVerletIntegrator Scanning dependencies of target TestReferenceVariableVerletIntegrator make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/depend.internal". make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/depend.internal". make -f platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build Scanning dependencies of target TestReferenceVirtualSites make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend.internal". Scanning dependencies of target TestReferenceRMSDForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestReferenceRBTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build Scanning dependencies of target TestReferenceRandom make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend.internal". Scanning dependencies of target TestReferencePeriodicTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend.internal". Scanning dependencies of target TestReferenceNoseHooverIntegrator Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend.internal". make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestReferenceMonteCarloBarostat Scanning dependencies of target TestReferenceNeighborList make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVariableVerletIntegrator.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVerletIntegrator.cpp make -f platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o Scanning dependencies of target TestReferenceCustomCompoundBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVirtualSites.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRMSDForce.cpp make -f platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build [ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRandom.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/depend [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceNoseHooverIntegrator.cpp make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/depend cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRBTorsionForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/DependInfo.cmake --color= [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/depend cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceNeighborList.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/DependInfo.cmake --color= [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomCompoundBondForce.cpp [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloBarostat.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomManyParticleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/depend.internal". Scanning dependencies of target TestReferenceHarmonicAngleForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build Scanning dependencies of target TestReferenceCustomBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceHarmonicAngleForce.cpp [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomBondForce.cpp [ 61%] Linking CXX executable ../../../TestReferenceNeighborList cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNeighborList.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -o ../../../TestReferenceNeighborList -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target TestReferenceNeighborList make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceLangevinMiddleIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceLangevinMiddleIntegrator.cpp [ 61%] Linking CXX executable ../../../TestReferenceRandom cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRandom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -o ../../../TestReferenceRandom -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 61%] Linking CXX executable ../../../TestReferencePeriodicTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferencePeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -o ../../../TestReferencePeriodicTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target TestReferenceRandom make -f platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceCompoundIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCompoundIntegrator.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Linking CXX executable ../../../TestReferenceRMSDForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRMSDForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -o ../../../TestReferenceRMSDForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 61%] Built target TestReferencePeriodicTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomExternalForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomExternalForce.cpp [ 61%] Linking CXX executable ../../../TestReferenceVerletIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVerletIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -o ../../../TestReferenceVerletIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 61%] Linking CXX executable ../../../TestReferenceRBTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -o ../../../TestReferenceRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Linking CXX executable ../../../TestReferenceMonteCarloBarostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloBarostat.dir/link.txt --verbose=1 [ 61%] Built target TestReferenceRMSDForce /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -o ../../../TestReferenceMonteCarloBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make -f platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/depend.internal". Scanning dependencies of target TestReferenceCheckpoints make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCheckpoints.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target TestReferenceVerletIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/depend.internal". [ 61%] Built target TestReferenceRBTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend Scanning dependencies of target TestReferenceVariableLangevinIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build [ 61%] Linking CXX executable ../../../TestReferenceHarmonicAngleForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicAngleForce.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend.internal". Scanning dependencies of target TestReferenceCMMotionRemover make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVariableLangevinIntegrator.cpp make -f platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -o ../../../TestReferenceHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCMMotionRemover.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target TestReferenceMonteCarloBarostat make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomAngleForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target TestReferenceHarmonicAngleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/depend.internal". Scanning dependencies of target TestReferenceCMAPTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCMAPTorsionForce.cpp [ 61%] Linking CXX executable ../../../TestReferenceCMMotionRemover cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMMotionRemover.dir/link.txt --verbose=1 [ 63%] Linking CXX executable ../../../TestReferenceVariableVerletIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableVerletIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -o ../../../TestReferenceCMMotionRemover -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -o ../../../TestReferenceVariableVerletIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceCMMotionRemover make -f platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/depend.internal". make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestReferenceBrownianIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceVariableVerletIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/DependInfo.cmake --color= [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/depend.internal". Scanning dependencies of target TestReferenceAndersenThermostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceAndersenThermostat.cpp [ 63%] Linking CXX executable ../../../TestReferenceVirtualSites cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVirtualSites.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -o ../../../TestReferenceVirtualSites -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceVirtualSites make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomHbondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomHbondForce.cpp [ 65%] Linking CXX executable ../../../TestReferenceLangevinMiddleIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -o ../../../TestReferenceLangevinMiddleIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceLangevinMiddleIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceCustomIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomIntegrator.cpp [ 65%] Linking CXX executable ../../../TestReferenceCustomBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -o ../../../TestReferenceCustomBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceCustomBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceLangevinIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp [ 65%] Linking CXX executable ../../../TestReferenceCustomCompoundBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCompoundBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -o ../../../TestReferenceCustomCompoundBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 65%] Linking CXX executable ../../../TestReferenceCMAPTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMAPTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -o ../../../TestReferenceCMAPTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceCustomCompoundBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomTorsionForce.cpp [ 67%] Linking CXX executable ../../../TestReferenceCheckpoints cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCheckpoints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -o ../../../TestReferenceCheckpoints -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceCMAPTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/depend.internal". Scanning dependencies of target TestReferenceDispersionPME make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceDispersionPME.cpp [ 67%] Linking CXX executable ../../../TestReferenceNoseHooverIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNoseHooverIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -o ../../../TestReferenceNoseHooverIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 67%] Linking CXX executable ../../../TestReferenceCustomExternalForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomExternalForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -o ../../../TestReferenceCustomExternalForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceCustomExternalForce make -f platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/depend.internal". Scanning dependencies of target TestReferenceNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceNonbondedForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceNoseHooverIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomGBForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomGBForce.cpp [ 67%] Linking CXX executable ../../../TestReferenceAndersenThermostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAndersenThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -o ../../../TestReferenceAndersenThermostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 67%] Linking CXX executable ../../../TestReferenceCustomAngleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -o ../../../TestReferenceCustomAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceCustomAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend [ 67%] Built target TestReferenceAndersenThermostat make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend.internal". Scanning dependencies of target TestReferenceKineticEnergy make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/depend.internal". [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceKineticEnergy.cpp Scanning dependencies of target TestReferenceEwald make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceEwald.cpp [ 67%] Linking CXX executable ../../../TestReferenceCompoundIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCompoundIntegrator.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -o ../../../TestReferenceCompoundIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 67%] Built target TestReferenceCheckpoints make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/depend.internal". Scanning dependencies of target TestReferenceMonteCarloMembraneBarostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloMembraneBarostat.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceCompoundIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomCentroidBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomCentroidBondForce.cpp [ 67%] Linking CXX executable ../../../TestReferenceCustomManyParticleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomManyParticleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -o ../../../TestReferenceCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceCustomManyParticleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/depend.internal". Scanning dependencies of target TestReferenceLocalEnergyMinimizer make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceLocalEnergyMinimizer.cpp [ 67%] Linking CXX executable ../../../TestReferenceVariableLangevinIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -o ../../../TestReferenceVariableLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceVariableLangevinIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/depend.internal". Scanning dependencies of target TestReferenceGayBerneForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceGayBerneForce.cpp [ 67%] Linking CXX executable ../../../TestReferenceBrownianIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceBrownianIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -o ../../../TestReferenceBrownianIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceBrownianIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/depend.internal". Scanning dependencies of target TestReferenceSettle make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceSettle.cpp [ 69%] Linking CXX executable ../../../TestReferenceKineticEnergy cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceKineticEnergy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -o ../../../TestReferenceKineticEnergy -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target TestReferenceKineticEnergy make -f platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/depend.internal". Scanning dependencies of target TestReferenceGBSAOBCForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceGBSAOBCForce.cpp [ 69%] Linking CXX executable ../../../TestReferenceLangevinIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -o ../../../TestReferenceLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 69%] Linking CXX executable ../../../TestReferenceMonteCarloMembraneBarostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -o ../../../TestReferenceMonteCarloMembraneBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target TestReferenceLangevinIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/depend.internal". Scanning dependencies of target TestReferenceHarmonicBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceHarmonicBondForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target TestReferenceMonteCarloMembraneBarostat make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomCVForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomCVForce.cpp [ 69%] Linking CXX executable ../../../TestReferenceCustomTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -o ../../../TestReferenceCustomTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target TestReferenceCustomTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/depend.internal". Scanning dependencies of target TestReferenceMonteCarloAnisotropicBarostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp [ 69%] Linking CXX executable ../../../TestReferenceSettle cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceSettle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -o ../../../TestReferenceSettle -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target TestReferenceSettle make -f platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build.make platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/sharedTarget /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/depend.internal". Scanning dependencies of target OpenMMCPU make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build.make platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuBondForce.cpp [ 69%] Linking CXX executable ../../../TestReferenceLocalEnergyMinimizer cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -o ../../../TestReferenceLocalEnergyMinimizer -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target TestReferenceLocalEnergyMinimizer make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend.internal". Scanning dependencies of target OpenMMAmoeba make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaAngleForce.cpp [ 71%] Linking CXX executable ../../../TestReferenceCustomHbondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomHbondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -o ../../../TestReferenceCustomHbondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceCustomHbondForce make -f plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build.make plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/rpmd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/depend.internal". Scanning dependencies of target OpenMMRPMD make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build.make plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMD_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src/RPMDIntegrator.cpp [ 71%] Linking CXX executable ../../../TestReferenceGayBerneForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGayBerneForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -o ../../../TestReferenceGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 71%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomGBForce.cpp [ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaAngleForceImpl.cpp [ 71%] Linking CXX executable ../../../TestReferenceCustomNonbondedForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -o ../../../TestReferenceCustomNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceGayBerneForce make -f plugins/drude/CMakeFiles/OpenMMDrude.dir/build.make plugins/drude/CMakeFiles/OpenMMDrude.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/depend.internal". make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceCustomNonbondedForce make -f serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build.make serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend Scanning dependencies of target OpenMMDrude make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/CMakeFiles/OpenMMDrude.dir/build.make plugins/drude/CMakeFiles/OpenMMDrude.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend.internal". [ 71%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeForce.cpp Scanning dependencies of target TestSerializeTabulatedFunctions make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build.make serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeTabulatedFunctions.cpp [ 71%] Linking CXX executable ../../../TestReferenceMonteCarloAnisotropicBarostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -o ../../../TestReferenceMonteCarloAnisotropicBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceMonteCarloAnisotropicBarostat make -f serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/depend.internal". [ 71%] Linking CXX executable ../../../TestReferenceHarmonicBondForce Scanning dependencies of target TestSerializeCustomHbondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -o ../../../TestReferenceHarmonicBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../libOpenMM.so.7.5 -ldl -lpthread [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomHbondForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceHarmonicBondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/depend.internal". [ 71%] Linking CXX executable ../../../TestReferenceGBSAOBCForce Scanning dependencies of target TestSerializeCustomManyParticleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGBSAOBCForce.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -o ../../../TestReferenceGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomManyParticleForce.cpp [ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaBondForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceGBSAOBCForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomCVForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomCVForce.cpp [ 71%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeForceImpl.cpp [ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaBondForceImpl.cpp [ 71%] Linking CXX executable ../../../TestReferenceCustomCentroidBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCentroidBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -o ../../../TestReferenceCustomCentroidBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 71%] Linking CXX executable ../../../TestReferenceCustomGBForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomGBForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -o ../../../TestReferenceCustomGBForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceCustomGBForce make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomAngleForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceCustomCentroidBondForce make -f serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/DependInfo.cmake --color= [ 71%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMD_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostat.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/depend.internal". Scanning dependencies of target TestSerializeCMMotionRemover make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCMMotionRemover.cpp [ 71%] Linking CXX executable ../../../TestReferenceCustomCVForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCVForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -o ../../../TestReferenceCustomCVForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceCustomCVForce make -f serialization/tests/CMakeFiles/TestSerializeSystem.dir/build.make serialization/tests/CMakeFiles/TestSerializeSystem.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/depend.internal". Scanning dependencies of target TestSerializeSystem make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeSystem.dir/build.make serialization/tests/CMakeFiles/TestSerializeSystem.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeSystem.cpp [ 71%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMD_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp [ 71%] Linking CXX executable ../../../TestReferenceNonbondedForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -o ../../../TestReferenceNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 71%] Linking CXX executable ../../TestSerializeCustomCVForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCVForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -o ../../TestSerializeCustomCVForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target TestReferenceNonbondedForce make -f serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomBondForce.cpp [ 73%] Built target TestSerializeCustomCVForce make -f serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/depend.internal". Scanning dependencies of target TestSerializeGayBerneForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o [ 73%] Linking CXX executable ../../TestSerializeCustomManyParticleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomManyParticleForce.dir/link.txt --verbose=1 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeGayBerneForce.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -o ../../TestSerializeCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestSerializeCustomManyParticleForce make -f serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/depend.internal". Scanning dependencies of target TestSerializePeriodicTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializePeriodicTorsionForce.cpp [ 73%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp [ 73%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeHelpers.cpp [ 73%] Linking CXX executable ../../TestSerializeCMMotionRemover cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMMotionRemover.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -o ../../TestSerializeCMMotionRemover -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 73%] Linking CXX executable ../../TestSerializeCustomHbondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomHbondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -o ../../TestSerializeCustomHbondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestSerializeCMMotionRemover make -f serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/depend.internal". Scanning dependencies of target TestSerializeRBTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeRBTorsionForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestSerializeCustomHbondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomCompoundBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Linking CXX executable ../../../TestReferenceDispersionPME cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDispersionPME.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -o ../../../TestReferenceDispersionPME -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomCompoundBondForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestReferenceDispersionPME make -f serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomCentroidBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomCentroidBondForce.cpp [ 73%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp [ 73%] Linking CXX executable ../../TestSerializeGayBerneForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGayBerneForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -o ../../TestSerializeGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 73%] Linking CXX executable ../../TestSerializeCustomBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -o ../../TestSerializeCustomBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestSerializeCustomBondForce make -f serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/depend.internal". Scanning dependencies of target TestSerializeAndersenThermostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeAndersenThermostat.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestSerializeGayBerneForce make -f serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/depend.internal". Scanning dependencies of target TestSerializeHarmonicBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build [ 73%] Linking CXX executable ../../TestSerializePeriodicTorsionForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializePeriodicTorsionForce.dir/link.txt --verbose=1 [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeHarmonicBondForce.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -o ../../TestSerializePeriodicTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 73%] Linking CXX shared library ../../libOpenMMRPMD.so cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMD.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMD.so -o ../../libOpenMMRPMD.so CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: -ldl ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestSerializePeriodicTorsionForce make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/DependInfo.cmake --color= [ 73%] Linking CXX executable ../../TestSerializeCustomAngleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomAngleForce.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/depend.internal". Scanning dependencies of target TestSerializationNode make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -o ../../TestSerializeCustomAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializationNode.cpp [ 73%] Built target OpenMMRPMD make -f serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/depend.internal". Scanning dependencies of target TestSerializeGBSAOBCForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeGBSAOBCForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestSerializeCustomAngleForce make -f serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/depend.internal". Scanning dependencies of target TestSerializeNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Linking CXX executable ../../TestSerializeTabulatedFunctions cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeTabulatedFunctions.dir/link.txt --verbose=1 [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeNonbondedForce.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -o ../../TestSerializeTabulatedFunctions -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 75%] Linking CXX executable ../../../TestReferenceCustomIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -o ../../../TestReferenceCustomIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 75%] Linking CXX executable ../../TestSerializeRBTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -o ../../TestSerializeRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target TestReferenceCustomIntegrator make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/depend.internal". make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestSerializeMonteCarloBarostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target TestSerializeRBTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/DependInfo.cmake --color= [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeMonteCarloBarostat.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomNonbondedForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target TestSerializeTabulatedFunctions make -f serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build [ 75%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeIntegrator.cpp [ 75%] Linking CXX executable ../../TestSerializeAndersenThermostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeAndersenThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -o ../../TestSerializeAndersenThermostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomTorsionForce.cpp [ 75%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForce.cpp [ 75%] Linking CXX executable ../../TestSerializeSystem cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeSystem.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -o ../../TestSerializeSystem -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 75%] Built target TestSerializeAndersenThermostat make -f serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomGBForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomGBForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target TestSerializeSystem make -f serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/depend.internal". Scanning dependencies of target TestSerializeIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeIntegrator.cpp [ 75%] Linking CXX executable ../../TestSerializeCustomCompoundBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCompoundBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -o ../../TestSerializeCustomCompoundBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp [ 75%] Built target TestSerializeCustomCompoundBondForce make -f serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/depend.internal". Scanning dependencies of target TestSerializeCMAPTorsion make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCMAPTorsion.cpp [ 75%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeLangevinIntegrator.cpp [ 75%] Linking CXX executable ../../TestSerializationNode [ 75%] Linking CXX executable ../../TestSerializeMonteCarloBarostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializationNode.dir/link.txt --verbose=1 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -o ../../TestSerializationNode -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -o ../../TestSerializeMonteCarloBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 75%] Linking CXX executable ../../TestSerializeHarmonicBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -o ../../TestSerializeHarmonicBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Linking CXX executable ../../TestSerializeGBSAOBCForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGBSAOBCForce.dir/link.txt --verbose=1 [ 75%] Built target TestSerializationNode make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -o ../../TestSerializeGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 75%] Built target TestSerializeMonteCarloBarostat make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend.internal". Scanning dependencies of target TestSerializeMonteCarloMembraneBarostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeMonteCarloMembraneBarostat.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestSerializeHarmonicBondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestSerializeGBSAOBCForce make -f serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/depend.internal". Scanning dependencies of target TestSerializeNoseHooverIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeNoseHooverIntegrator.cpp Scanning dependencies of target TestSerializeMonteCarloAnisotropicBarostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeMonteCarloAnisotropicBarostat.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomExternalForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build [ 77%] Linking CXX executable ../../../TestReferenceEwald cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceEwald.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -o ../../../TestReferenceEwald -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestReferenceEwald [ 77%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomManyParticleForce.cpp [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomExternalForce.cpp [ 77%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeNoseHooverIntegrator.cpp [ 77%] Linking CXX executable ../../TestSerializeCustomTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -o ../../TestSerializeCustomTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 77%] Linking CXX executable ../../TestSerializeCustomCentroidBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCentroidBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -o ../../TestSerializeCustomCentroidBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 77%] Linking CXX executable ../../TestSerializeNonbondedForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNonbondedForce.dir/link.txt --verbose=1 [ 77%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaMultipoleForce.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -o ../../TestSerializeNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestSerializeCustomTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeState.dir/build.make serialization/tests/CMakeFiles/TestSerializeState.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeState.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeState.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeState.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeState.dir/depend.internal". Scanning dependencies of target TestSerializeState make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeState.dir/build.make serialization/tests/CMakeFiles/TestSerializeState.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestSerializeCustomCentroidBondForce make -f serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/depend [ 77%] Built target TestSerializeNonbondedForce [ 77%] Linking CXX executable ../../TestSerializeCMAPTorsion cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMAPTorsion.dir/link.txt --verbose=1 [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeState.cpp [ 77%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomNonbondedForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/depend.internal". Scanning dependencies of target TestSerializeHarmonicAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -o ../../TestSerializeCMAPTorsion -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeHarmonicAngleForce.cpp [ 77%] Linking CXX executable ../../TestSerializeMonteCarloMembraneBarostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/link.txt --verbose=1 [ 77%] Linking CXX executable ../../TestSerializeMonteCarloAnisotropicBarostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -o ../../TestSerializeMonteCarloAnisotropicBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestSerializeMonteCarloAnisotropicBarostat make -f serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/depend.internal". Scanning dependencies of target TestSerializeRMSDForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeRMSDForce.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -o ../../TestSerializeMonteCarloMembraneBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestSerializeCMAPTorsion make -f tests/CMakeFiles/TestEnforcePeriodicBox.dir/build.make tests/CMakeFiles/TestEnforcePeriodicBox.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/depend.internal". Scanning dependencies of target TestEnforcePeriodicBox make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestEnforcePeriodicBox.dir/build.make tests/CMakeFiles/TestEnforcePeriodicBox.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object tests/CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestEnforcePeriodicBox.cpp [ 79%] Linking CXX executable ../../TestSerializeCustomNonbondedForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -o ../../TestSerializeCustomNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target TestSerializeCustomNonbondedForce make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/depend.internal". Scanning dependencies of target TestFindExclusions make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object tests/CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestFindExclusions.cpp [ 79%] Linking CXX executable ../../TestSerializeCustomGBForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomGBForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -o ../../TestSerializeCustomGBForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target TestSerializeCustomGBForce make -f tests/CMakeFiles/TestFindMolecules.dir/build.make tests/CMakeFiles/TestFindMolecules.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindMolecules.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindMolecules.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindMolecules.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindMolecules.dir/depend.internal". Scanning dependencies of target TestFindMolecules make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestFindMolecules.dir/build.make tests/CMakeFiles/TestFindMolecules.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object tests/CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestFindMolecules.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target TestSerializeMonteCarloMembraneBarostat make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/depend.internal". Scanning dependencies of target TestParser make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object tests/CMakeFiles/TestParser.dir/TestParser.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestParser.dir/TestParser.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestParser.cpp [ 79%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeSCFIntegrator.cpp [ 79%] Linking CXX executable ../../TestSerializeRMSDForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRMSDForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -o ../../TestSerializeRMSDForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target TestSerializeRMSDForce make -f tests/CMakeFiles/TestSplineFitter.dir/build.make tests/CMakeFiles/TestSplineFitter.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/depend.internal". Scanning dependencies of target TestSplineFitter make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestSplineFitter.dir/build.make tests/CMakeFiles/TestSplineFitter.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object tests/CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestSplineFitter.cpp [ 79%] Linking CXX executable ../../TestSerializeCustomExternalForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomExternalForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -o ../../TestSerializeCustomExternalForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 79%] Linking CXX executable ../TestEnforcePeriodicBox cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEnforcePeriodicBox.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -o ../TestEnforcePeriodicBox -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread [ 79%] Linking CXX executable ../../TestSerializeNoseHooverIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNoseHooverIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -o ../../TestSerializeNoseHooverIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target TestSerializeCustomExternalForce make -f tests/CMakeFiles/TestVectorizeAvx.dir/build.make tests/CMakeFiles/TestVectorizeAvx.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/depend.internal". Scanning dependencies of target TestVectorizeAvx make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorizeAvx.dir/build.make tests/CMakeFiles/TestVectorizeAvx.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object tests/CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -mavx -std=gnu++11 -o CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorizeAvx.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target TestEnforcePeriodicBox make -f tests/CMakeFiles/TestSystem.dir/build.make tests/CMakeFiles/TestSystem.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/depend.internal". [ 79%] Built target TestSerializeNoseHooverIntegrator Scanning dependencies of target TestSystem make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestSystem.dir/build.make tests/CMakeFiles/TestSystem.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeForceProxy.cpp [ 79%] Building CXX object tests/CMakeFiles/TestSystem.dir/TestSystem.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSystem.dir/TestSystem.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestSystem.cpp [ 81%] Linking CXX executable ../TestFindMolecules cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindMolecules.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -o ../TestFindMolecules -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread [ 81%] Linking CXX executable ../TestFindExclusions cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindExclusions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -o ../TestFindExclusions -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread [ 81%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeLangevinIntegratorProxy.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target TestFindMolecules make -f tests/CMakeFiles/TestVectorExpression.dir/build.make tests/CMakeFiles/TestVectorExpression.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/depend.internal". Scanning dependencies of target TestVectorExpression make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorExpression.dir/build.make tests/CMakeFiles/TestVectorExpression.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target TestFindExclusions make -f tests/CMakeFiles/TestVectorize.dir/build.make tests/CMakeFiles/TestVectorize.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/DependInfo.cmake --color= [ 81%] Building CXX object tests/CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorExpression.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/depend.internal". Scanning dependencies of target TestVectorize make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorize.dir/build.make tests/CMakeFiles/TestVectorize.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object tests/CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -msse4.1 -std=gnu++11 -o CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorize.cpp [ 81%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp [ 81%] Linking CXX executable ../../TestSerializeHarmonicAngleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -o ../../TestSerializeHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target TestSerializeHarmonicAngleForce make -f tests/CMakeFiles/TestVectorizeAvx2.dir/build.make tests/CMakeFiles/TestVectorizeAvx2.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx2.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx2.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx2.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx2.dir/depend.internal". Scanning dependencies of target TestVectorizeAvx2 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorizeAvx2.dir/build.make tests/CMakeFiles/TestVectorizeAvx2.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object tests/CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -mfma -mavx2 -std=gnu++11 -o CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorizeAvx2.cpp [ 81%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuGBSAOBCForce.cpp [ 81%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeNoseHooverIntegratorProxy.cpp [ 81%] Linking CXX executable ../../TestSerializeIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -o ../../TestSerializeIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target TestSerializeIntegrator make -f examples/CMakeFiles/HelloEthane.dir/build.make examples/CMakeFiles/HelloEthane.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloEthane.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloEthane.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloEthane.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloEthane.dir/depend.internal". Scanning dependencies of target HelloEthane make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloEthane.dir/build.make examples/CMakeFiles/HelloEthane.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object examples/CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -c /build/openmm-7.5.0+dfsg/examples/HelloEthane.cpp [ 81%] Linking CXX executable ../TestVectorExpression cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorExpression.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -o ../TestVectorExpression -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target TestVectorExpression make -f examples/CMakeFiles/HelloWaterBox.dir/build.make examples/CMakeFiles/HelloWaterBox.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloWaterBox.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloWaterBox.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloWaterBox.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloWaterBox.dir/depend.internal". Scanning dependencies of target HelloWaterBox make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloWaterBox.dir/build.make examples/CMakeFiles/HelloWaterBox.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object examples/CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -c /build/openmm-7.5.0+dfsg/examples/HelloWaterBox.cpp [ 81%] Linking CXX executable ../../TestSerializeState cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeState.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -o ../../TestSerializeState -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 81%] Linking CXX executable ../TestSystem cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSystem.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSystem.dir/TestSystem.cpp.o -o ../TestSystem -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target TestSerializeState make -f examples/CMakeFiles/HelloSodiumChloride.dir/build.make examples/CMakeFiles/HelloSodiumChloride.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/depend.internal". 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Scanning dependencies of target HelloSodiumChloride make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloSodiumChloride.dir/build.make examples/CMakeFiles/HelloSodiumChloride.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object examples/CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -c /build/openmm-7.5.0+dfsg/examples/HelloSodiumChloride.cpp [ 81%] Built target TestSystem make -f examples/CMakeFiles/HelloArgon.dir/build.make examples/CMakeFiles/HelloArgon.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloArgon.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloArgon.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloArgon.dir/depend.internal". 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Scanning dependencies of target HelloArgon make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloArgon.dir/build.make examples/CMakeFiles/HelloArgon.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object examples/CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -c /build/openmm-7.5.0+dfsg/examples/HelloArgon.cpp [ 83%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeSerializationProxyRegistration.cpp [ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp [ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuGayBerneForce.cpp [ 83%] Linking CXX executable ../TestSplineFitter cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSplineFitter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -o ../TestSplineFitter -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Built target TestSplineFitter [ 83%] Linking CXX executable ../TestVectorizeAvx2 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -o ../TestVectorizeAvx2 -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread [ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuKernelFactory.cpp [ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Linking CXX executable ../HelloEthane cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloEthane.dir/link.txt --verbose=1 [ 83%] Built target TestVectorizeAvx2 make -f plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build.make plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -o ../HelloEthane -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/depend.internal". Scanning dependencies of target OpenMMRPMDReference make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build.make plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Linking CXX shared library ../../libOpenMMDrude.so cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrude.dir/link.txt --verbose=1 [ 83%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMDReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernelFactory.cpp /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrude.so -o ../../libOpenMMDrude.so CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: -ldl ../../libOpenMM.so.7.5 -ldl -lpthread [ 83%] Linking CXX executable ../HelloWaterBox cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloWaterBox.dir/link.txt --verbose=1 [ 83%] Linking CXX executable ../HelloSodiumChloride cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloSodiumChloride.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -o ../HelloWaterBox -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -o ../HelloSodiumChloride -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Built target HelloSodiumChloride make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o [ 83%] Built target HelloWaterBox cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuKernels.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaPiTorsionForce.cpp [ 83%] Built target HelloEthane [ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuLangevinDynamics.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Built target OpenMMDrude make -f plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build.make plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/depend.internal". Scanning dependencies of target OpenMMDrudeReference make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build.make plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrudeReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src/ReferenceDrudeKernelFactory.cpp [ 83%] Linking CXX executable ../HelloArgon cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloArgon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -o ../HelloArgon -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread [ 83%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMDReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernels.cpp [ 83%] Linking CXX executable ../TestVectorizeAvx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx.dir/link.txt --verbose=1 [ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaPiTorsionForceImpl.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -o ../TestVectorizeAvx -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Built target HelloArgon [ 83%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrudeReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src/ReferenceDrudeKernels.cpp [ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuLangevinMiddleDynamics.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 83%] Built target TestVectorizeAvx [ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaStretchBendForce.cpp [ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaStretchBendForceImpl.cpp [ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForce.cpp [ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNeighborList.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp [ 85%] Linking CXX shared library ../../../../libOpenMMRPMDReference.so cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMDReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMDReference.so -o ../../../../libOpenMMRPMDReference.so CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../../libOpenMMRPMD.so ../../../../libOpenMM.so.7.5 -lpthread -ldl [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaVdwForceImpl.cpp [ 85%] Linking CXX executable ../TestVectorize cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -o ../TestVectorize -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target OpenMMRPMDReference make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend.internal". Scanning dependencies of target TestReferenceRpmd make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 85%] Building CXX object plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/tests/TestReferenceRpmd.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target TestVectorize [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp [ 85%] Linking CXX shared library ../../../../libOpenMMDrudeReference.so cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrudeReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrudeReference.so -o ../../../../libOpenMMDrudeReference.so CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../../libOpenMMDrude.so ../../../../libOpenMM.so.7.5 -lpthread -ldl [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target OpenMMDrudeReference [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/HippoNonbondedForce.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/HippoNonbondedForceImpl.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaAngleForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaAngleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaAngleForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaBondForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaBondForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaBondForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaInPlaneAngleForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaInPlaneAngleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaInPlaneAngleForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaMultipoleForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaOutOfPlaneBendForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaOutOfPlaneBendForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaOutOfPlaneBendForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaPiTorsionForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaPiTorsionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaPiTorsionForceProxy.cpp [ 85%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForce.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaSerializationProxyRegistration.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaStretchBendForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaStretchBendForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaStretchBendForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaTorsionTorsionForceProxy.cpp [ 87%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaVdwForceProxy.cpp [ 87%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaWcaDispersionForceProxy.cpp [ 87%] Linking CXX executable ../../../../../TestReferenceRpmd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRpmd.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -o ../../../../../TestReferenceRpmd -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMRPMDReference.so ../../../../../libOpenMMRPMD.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread [ 87%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/HippoNonbondedForceProxy.cpp make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/depend.internal". [ 87%] Built target TestReferenceRpmd make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend Scanning dependencies of target TestReferenceDrudeNoseHoover make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/DependInfo.cmake --color= [ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeNoseHoover.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceDrudeLangevinIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeLangevinIntegrator.cpp make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceDrudeSCFIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeSCFIntegrator.cpp [ 89%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceAvx.cpp make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/depend.internal". Scanning dependencies of target TestReferenceDrudeForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeForce.cpp [ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx2 -mfma -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceAvx2.cpp [ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceFvec.cpp [ 91%] Linking CXX executable ../../../../../TestReferenceDrudeLangevinIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -o ../../../../../TestReferenceDrudeLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread [ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceVec4.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target TestReferenceDrudeLangevinIntegrator [ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuPlatform.cpp [ 91%] Linking CXX executable ../../../../../TestReferenceDrudeSCFIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -o ../../../../../TestReferenceDrudeSCFIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread [ 91%] Linking CXX executable ../../../../../TestReferenceDrudeNoseHoover cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeNoseHoover.dir/link.txt --verbose=1 [ 91%] Linking CXX shared library ../../libOpenMMAmoeba.so /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -o ../../../../../TestReferenceDrudeNoseHoover -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMAmoeba.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMAmoeba.so -o ../../libOpenMMAmoeba.so CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaAngleForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaBondForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaInPlaneAngleForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaOutOfPlaneBendForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaPiTorsionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaStretchBendForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: -ldl ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target TestReferenceDrudeSCFIntegrator [ 91%] Built target TestReferenceDrudeNoseHoover [ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuRandom.cpp [ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuSETTLE.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target OpenMMAmoeba make -f plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build.make plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/depend.internal". Scanning dependencies of target OpenMMAmoebaReference make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build.make plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernelFactory.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceAngleForce.cpp [ 91%] Linking CXX executable ../../../../../TestReferenceDrudeForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -o ../../../../../TestReferenceDrudeForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target TestReferenceDrudeForce [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp [ 91%] Linking CXX executable ../TestParser cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestParser.dir/TestParser.cpp.o -o ../TestParser -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target TestParser [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferencePiTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferencePiTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferencePiTorsionForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceStretchBendForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceStretchBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceStretchBendForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp [ 93%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceVdwForce.cpp [ 93%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp [ 93%] Linking CXX shared library ../../../libOpenMMCPU.so cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMCPU.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMCPU.so -o ../../../libOpenMMCPU.so CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../libOpenMM.so.7.5 -lpthread -ldl -lpthread [ 93%] Linking CXX shared library ../../../../libOpenMMAmoebaReference.so cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMAmoebaReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMAmoebaReference.so -o ../../../../libOpenMMAmoebaReference.so CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceAngleForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceBondForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferencePiTorsionForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceStretchBendForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../../libOpenMMAmoeba.so ../../../../libOpenMM.so.7.5 -lpthread -ldl make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target OpenMMCPU make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/DependInfo.cmake --color= make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/DependInfo.cmake --color= make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/DependInfo.cmake --color= Scanning dependencies of target TestCpuSettle make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/depend.internal". make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/DependInfo.cmake --color= make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend.internal". Scanning dependencies of target TestCpuNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend.internal". Scanning dependencies of target TestCpuCompoundIntegrator [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/depend.internal". cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuSettle.cpp Scanning dependencies of target TestCpuCustomGBForce Scanning dependencies of target TestCpuEwald Scanning dependencies of target TestCpuPeriodicTorsionForce make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestCpuCheckpoints make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/DependInfo.cmake --color= make -f platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestCpuGayBerneForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build Scanning dependencies of target TestCpuHarmonicAngleForce Scanning dependencies of target TestCpuDispersionPME make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCompoundIntegrator.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuNonbondedForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend.internal". Scanning dependencies of target TestCpuLangevinIntegrator [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCheckpoints.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuPeriodicTorsionForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomGBForce.cpp [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuGayBerneForce.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuEwald.cpp make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuDispersionPME.cpp make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/DependInfo.cmake --color= [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/DependInfo.cmake --color= cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuHarmonicAngleForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/DependInfo.cmake --color= [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend.internal". cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuLangevinIntegrator.cpp Scanning dependencies of target TestCpuRBTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target OpenMMAmoebaReference make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/DependInfo.cmake --color= Scanning dependencies of target TestCpuCustomManyParticleForce Scanning dependencies of target TestCpuCustomNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuRBTorsionForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend.internal". [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomManyParticleForce.cpp Scanning dependencies of target TestCpuLangevinMiddleIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomNonbondedForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuLangevinMiddleIntegrator.cpp [ 95%] Linking CXX executable ../../../TestCpuSettle cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuSettle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -o ../../../TestCpuSettle -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuSettle make -f platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/depend.internal". Scanning dependencies of target TestCpuGBSAOBCForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuGBSAOBCForce.cpp [ 95%] Linking CXX executable ../../../TestCpuCheckpoints cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCheckpoints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -o ../../../TestCpuCheckpoints -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuCheckpoints make -f platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/depend.internal". Scanning dependencies of target TestCpuNeighborList make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuNeighborList.cpp [ 95%] Linking CXX executable ../../../TestCpuPeriodicTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuPeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -o ../../../TestCpuPeriodicTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread [ 95%] Linking CXX executable ../../../TestCpuRBTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -o ../../../TestCpuRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuPeriodicTorsionForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend.internal". Scanning dependencies of target TestReferenceAmoebaAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaAngleForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuRBTorsionForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/depend.internal". Scanning dependencies of target TestReferenceAmoebaBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaBondForce.cpp [ 95%] Linking CXX executable ../../../TestCpuHarmonicAngleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuHarmonicAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -o ../../../TestCpuHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Linking CXX executable ../../../TestCpuGayBerneForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGayBerneForce.dir/link.txt --verbose=1 [ 95%] Linking CXX executable ../../../TestCpuLangevinIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinIntegrator.dir/link.txt --verbose=1 [ 95%] Built target TestCpuHarmonicAngleForce /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -o ../../../TestCpuGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -o ../../../TestCpuLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend.internal". Scanning dependencies of target TestReferenceAmoebaExtrapolatedPolarization make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaExtrapolatedPolarization.cpp [ 95%] Linking CXX executable ../../../TestCpuLangevinMiddleIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -o ../../../TestCpuLangevinMiddleIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuLangevinIntegrator make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend [ 95%] Built target TestCpuGayBerneForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend.internal". Scanning dependencies of target TestReferenceAmoebaInPlaneAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaInPlaneAngleForce.cpp Scanning dependencies of target TestReferenceAmoebaGeneralizedKirkwoodForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp [ 95%] Built target TestCpuLangevinMiddleIntegrator make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend.internal". Scanning dependencies of target TestReferenceAmoebaMultipoleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaMultipoleForce.cpp [ 95%] Linking CXX executable ../../../TestCpuCompoundIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCompoundIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -o ../../../TestCpuCompoundIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread [ 95%] Linking CXX executable ../../../TestCpuGBSAOBCForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGBSAOBCForce.dir/link.txt --verbose=1 [ 95%] Linking CXX executable ../../../TestCpuNeighborList cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNeighborList.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -o ../../../TestCpuGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -o ../../../TestCpuNeighborList -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuCompoundIntegrator make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend.internal". [ 95%] Built target TestCpuGBSAOBCForce Scanning dependencies of target TestReferenceAmoebaOutOfPlaneBendForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend.internal". [ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaOutOfPlaneBendForce.cpp Scanning dependencies of target TestReferenceAmoebaPiTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuNeighborList make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/DependInfo.cmake --color= [ 97%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaPiTorsionForce.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend.internal". Scanning dependencies of target TestReferenceHippoNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceHippoNonbondedForce.cpp [100%] Linking CXX executable ../../../TestCpuCustomGBForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomGBForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -o ../../../TestCpuCustomGBForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomGBForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend.internal". Scanning dependencies of target TestReferenceWcaDispersionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceWcaDispersionForce.cpp [100%] Linking CXX executable ../../../../../TestReferenceAmoebaBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaBondForce.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../../../../TestReferenceAmoebaAngleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o -o ../../../../../TestReferenceAmoebaBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o -o ../../../../../TestReferenceAmoebaAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaBondForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend.internal". Scanning dependencies of target TestReferenceAmoebaStretchBendForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaStretchBendForce.cpp [100%] Built target TestReferenceAmoebaAngleForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend.internal". Scanning dependencies of target TestReferenceAmoebaTorsionTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaTorsionTorsionForce.cpp [100%] Linking CXX executable ../../../TestCpuCustomManyParticleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomManyParticleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -o ../../../TestCpuCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomManyParticleForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend.internal". Scanning dependencies of target TestReferenceAmoebaVdwForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaVdwForce.cpp [100%] Linking CXX executable ../../../TestCpuNonbondedForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -o ../../../TestCpuNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread [100%] Linking CXX executable ../../../../../TestReferenceAmoebaPiTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o -o ../../../../../TestReferenceAmoebaPiTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Linking CXX executable ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/link.txt --verbose=1 [100%] Built target TestReferenceAmoebaPiTorsionForce [100%] Linking CXX executable ../../../../../TestReferenceAmoebaInPlaneAngleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -o ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o -o ../../../../../TestReferenceAmoebaInPlaneAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaInPlaneAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaGeneralizedKirkwoodForce [100%] Linking CXX executable ../../../../../TestReferenceWcaDispersionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceWcaDispersionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -o ../../../../../TestReferenceWcaDispersionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceWcaDispersionForce [100%] Linking CXX executable ../../../../../TestReferenceAmoebaStretchBendForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o -o ../../../../../TestReferenceAmoebaStretchBendForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread [100%] Linking CXX executable ../../../../../TestReferenceAmoebaTorsionTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -o ../../../../../TestReferenceAmoebaTorsionTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaStretchBendForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaTorsionTorsionForce [100%] Linking CXX executable ../../../../../TestReferenceAmoebaOutOfPlaneBendForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o -o ../../../../../TestReferenceAmoebaOutOfPlaneBendForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread [100%] Linking CXX executable ../../../../../TestReferenceAmoebaExtrapolatedPolarization cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -o ../../../../../TestReferenceAmoebaExtrapolatedPolarization -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaOutOfPlaneBendForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaExtrapolatedPolarization [100%] Linking CXX executable ../../../TestCpuCustomNonbondedForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -o ../../../TestCpuCustomNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomNonbondedForce [100%] Linking CXX executable ../../../../../TestReferenceHippoNonbondedForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHippoNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -o ../../../../../TestReferenceHippoNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceHippoNonbondedForce [100%] Linking CXX executable ../../../TestCpuDispersionPME cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuDispersionPME.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -o ../../../TestCpuDispersionPME -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuDispersionPME [100%] Linking CXX executable ../../../../../TestReferenceAmoebaMultipoleForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -o ../../../../../TestReferenceAmoebaMultipoleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaMultipoleForce [100%] Linking CXX executable ../../../TestCpuEwald cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuEwald.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -o ../../../TestCpuEwald -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuEwald [100%] Linking CXX executable ../../../../../TestReferenceAmoebaVdwForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaVdwForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -o ../../../../../TestReferenceAmoebaVdwForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaVdwForce make[3]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd obj-*/python && python3 setup.py build /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/compiled.pyx tree = Parsing.p_module(s, pxd, full_module_name) Warning: passing language='c++' to cythonize() is deprecated. Instead, put "# distutils: language=c++" in your .pyx or .pxd file(s) Compiling simtk/openmm/app/internal/compiled.pyx because it changed. [1/1] Cythonizing simtk/openmm/app/internal/compiled.pyx author Randall J. Radmer author_email radmer@stanford.edu data_files [] description Python wrapper for OpenMM (a C++ MD package) download_url https://simtk.org/home/openmm ext_modules[, ] license Python Software Foundation License (BSD-like) long_descriptionOpenMM is a toolkit for molecular simulation. It can be used either as a stand-alone application for running simulations, or as a library you call from your own code. It provides a combination of extreme flexibility (through custom forces and integrators), openness, and high performance (especially on recent GPUs) that make it truly unique among simulation codes. name OpenMM package_data{'simtk': [], 'simtk.unit': [], 'simtk.openmm': [], 'simtk.openmm.app': ['data/*.xml', 'data/*.pdb', 'data/amber14/*.xml', 'data/charmm36/*.xml'], 'simtk.openmm.app.internal': []} packages['simtk', 'simtk.unit', 'simtk.openmm', 'simtk.openmm.app', 'simtk.openmm.app.internal', 'simtk.openmm.app.internal.charmm', 'simtk.openmm.app.internal.pdbx', 'simtk.openmm.app.internal.pdbx.reader', 'simtk.openmm.app.internal.pdbx.writer'] platforms ['Linux', 'Mac OS X', 'Windows'] url https://simtk.org/home/openmm version 7.5.0 running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/simtk copying simtk/testInstallation.py -> build/lib.linux-x86_64-3.9/simtk copying simtk/__init__.py -> build/lib.linux-x86_64-3.9/simtk creating build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/unit_operators.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/unit_math.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/unit_definitions.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/unit.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/standard_dimensions.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/quantity.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/prefix.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/constants.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/mymatrix.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/doctests.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/baseunit.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/basedimension.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/__init__.py -> build/lib.linux-x86_64-3.9/simtk/unit creating build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/openmm.py -> build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/mtsintegrator.py -> build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/vec3.py -> build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/amd.py -> build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/version.py -> build/lib.linux-x86_64-3.9/simtk/openmm creating build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/topology.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/simulation.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/statedatareporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/simulatedtempering.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/pdbreporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/pdbxfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/pdbfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/metadynamics.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/modeller.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/gromacsgrofile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/forcefield.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/element.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/gromacstopfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/desmonddmsfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/dcdreporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/dcdfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/checkpointreporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/charmmpsffile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/charmmparameterset.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/charmmcrdfiles.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/amberprmtopfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/amberinpcrdfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app creating build/lib.linux-x86_64-3.9/simtk/openmm/app/internal copying simtk/openmm/app/internal/unitcell.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal copying simtk/openmm/app/internal/singleton.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal copying simtk/openmm/app/internal/pdbstructure.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal copying simtk/openmm/app/internal/customgbforces.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal copying simtk/openmm/app/internal/amber_file_parser.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal copying simtk/openmm/app/internal/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal creating build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm copying simtk/openmm/app/internal/charmm/exceptions.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm copying simtk/openmm/app/internal/charmm/topologyobjects.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm copying simtk/openmm/app/internal/charmm/_charmmfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm copying simtk/openmm/app/internal/charmm/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm creating build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx copying simtk/openmm/app/internal/pdbx/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx creating build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader copying simtk/openmm/app/internal/pdbx/reader/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader copying simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader copying simtk/openmm/app/internal/pdbx/reader/PdbxReader.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader copying simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader copying simtk/openmm/app/internal/pdbx/reader/PdbxParser.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader copying simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader creating build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/writer copying simtk/openmm/app/internal/pdbx/writer/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/writer copying simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/writer copying simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/writer creating build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip5p.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip4pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip4pew.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip3pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip3p.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/spce.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/swm4ndp.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/residues.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/pdbNames.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/iamoeba.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/charmm_polar_2019.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/hydrogens.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/charmm_polar_2013.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/charmm36.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amoeba2013_gk.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amoeba2013.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amoeba2009_gk.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amoeba2009.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amberfb15.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber99sbnmr.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber99sbildn.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber99_obc.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber99sb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber99Test.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber96_obc.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber96.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber14-all.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber10_obc.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber10.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber03_obc.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber03.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/absinth.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip5p.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip4pew.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip3p.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/test.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/spce.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/POPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/POPE.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DPPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DOPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DMPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DLPE.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DLPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data creating build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/tip4pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/tip4pew.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/protein.ff15ipq.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/tip3p.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/tip3pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/spce.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/protein.ff14SB.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/lipid17.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/RNA.OL3.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/DNA.bsc1.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/DNA.OL15.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 creating build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/water.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip5pew.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip5p.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip4pew.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip4p2005.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip3p-pme-f.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/spce.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip3p-pme-b.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 running build_ext building 'simtk.openmm._openmm' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src creating build/temp.linux-x86_64-3.9/src/swig_doxygen x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DMAJOR_VERSION=7 -DMINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/swig_doxygen/OpenMMSwig.cxx -o build/temp.linux-x86_64-3.9/src/swig_doxygen/OpenMMSwig.o -std=c++11 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/swig_doxygen/OpenMMSwig.cxx:6593: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /build/openmm-7.5.0+dfsg/openmmapi/include/OpenMM.h:53, from src/swig_doxygen/OpenMMSwig.cxx:6579: /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GayBerneForce.h: In constructor 'OpenMM::GayBerneForce::ParticleInfo::ParticleInfo(double, double, int, int, double, double, double, double, double, double)': /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GayBerneForce.h:286:19: warning: 'OpenMM::GayBerneForce::ParticleInfo::epsilon' will be initialized after [-Wreorder] 286 | double sigma, epsilon, sx, sy, sz, ex, ey, ez; | ^~~~~~~ /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GayBerneForce.h:285:9: warning: 'int OpenMM::GayBerneForce::ParticleInfo::xparticle' [-Wreorder] 285 | int xparticle, yparticle; | ^~~~~~~~~ /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/GayBerneForce.h:291:5: warning: when initialized here [-Wreorder] 291 | ParticleInfo(double sigma, double epsilon, int xparticle, int yparticle, double sx, double sy, double sz, double ex, double ey, double ez) : | ^~~~~~~~~~~~ In file included from /build/openmm-7.5.0+dfsg/openmmapi/include/OpenMM.h:64, from src/swig_doxygen/OpenMMSwig.cxx:6579: /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h: In constructor 'OpenMM::NonbondedForce::ParticleOffsetInfo::ParticleOffsetInfo(int, int, double, double, double)': /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:671:19: warning: 'OpenMM::NonbondedForce::ParticleOffsetInfo::parameter' will be initialized after [-Wreorder] 671 | int particle, parameter; | ^~~~~~~~~ /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:671:9: warning: 'int OpenMM::NonbondedForce::ParticleOffsetInfo::particle' [-Wreorder] 671 | int particle, parameter; | ^~~~~~~~ /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:677:5: warning: when initialized here [-Wreorder] 677 | ParticleOffsetInfo(int parameter, int particle, double chargeScale, double sigmaScale, double epsilonScale) : | ^~~~~~~~~~~~~~~~~~ /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h: In constructor 'OpenMM::NonbondedForce::ExceptionOffsetInfo::ExceptionOffsetInfo(int, int, double, double, double)': /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:688:20: warning: 'OpenMM::NonbondedForce::ExceptionOffsetInfo::parameter' will be initialized after [-Wreorder] 688 | int exception, parameter; | ^~~~~~~~~ /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:688:9: warning: 'int OpenMM::NonbondedForce::ExceptionOffsetInfo::exception' [-Wreorder] 688 | int exception, parameter; | ^~~~~~~~~ /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:694:5: warning: when initialized here [-Wreorder] 694 | ExceptionOffsetInfo(int parameter, int exception, double chargeProdScale, double sigmaScale, double epsilonScale) : | ^~~~~~~~~~~~~~~~~~~ In file included from /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h:44, from src/swig_doxygen/OpenMMSwig.cxx:6580: /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h: In constructor 'OpenMM::AmoebaVdwForce::VdwInfo::VdwInfo(int, double, double, int, double, bool)': /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h:492:36: warning: 'OpenMM::AmoebaVdwForce::VdwInfo::epsilon' will be initialized after [-Wreorder] 492 | double reductionFactor, sigma, epsilon, cutoff; | ^~~~~~~ /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h:491:22: warning: 'int OpenMM::AmoebaVdwForce::VdwInfo::typeIndex' [-Wreorder] 491 | int parentIndex, typeIndex; | ^~~~~~~~~ /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h:501:5: warning: when initialized here [-Wreorder] 501 | VdwInfo(int parentIndex, double sigma, double epsilon, int typeIndex, double reductionFactor, bool isAlchemical) : | ^~~~~~~ In file included from /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h:46, from src/swig_doxygen/OpenMMSwig.cxx:6580: /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h: In constructor 'OpenMM::HippoNonbondedForce::ParticleInfo::ParticleInfo(double, const std::vector >&, const std::vector >&, double, double, double, double, double, double, double, double, double, int, int, int, int)': /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:407:33: warning: 'OpenMM::HippoNonbondedForce::ParticleInfo::quadrupole' will be initialized after [-Wreorder] 407 | std::vector dipole, quadrupole; | ^~~~~~~~~~ /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:406:20: warning: 'double OpenMM::HippoNonbondedForce::ParticleInfo::coreCharge' [-Wreorder] 406 | double charge, coreCharge, alpha, epsilon, damping, c6, pauliK, pauliQ, pauliAlpha, polarizability; | ^~~~~~~~~~ /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:414:5: warning: when initialized here [-Wreorder] 414 | ParticleInfo(double charge, const std::vector& dipole, const std::vector& quadrupole, double coreCharge, | ^~~~~~~~~~~~ /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:406:89: warning: 'OpenMM::HippoNonbondedForce::ParticleInfo::polarizability' will be initialized after [-Wreorder] 406 | double charge, coreCharge, alpha, epsilon, damping, c6, pauliK, pauliQ, pauliAlpha, polarizability; | ^~~~~~~~~~~~~~ /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:405:9: warning: 'int OpenMM::HippoNonbondedForce::ParticleInfo::axisType' [-Wreorder] 405 | int axisType, multipoleAtomZ, multipoleAtomX, multipoleAtomY; | ^~~~~~~~ /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:414:5: warning: when initialized here [-Wreorder] 414 | ParticleInfo(double charge, const std::vector& dipole, const std::vector& quadrupole, double coreCharge, | ^~~~~~~~~~~~ In file included from /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/State.h:35, from /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Integrator.h:35, from /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/BrownianIntegrator.h:35, from /build/openmm-7.5.0+dfsg/openmmapi/include/OpenMM.h:36, from src/swig_doxygen/OpenMMSwig.cxx:6579: /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Vec3.h: At global scope: /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Vec3.h:160:13: warning: 'OpenMM::Vec3 OpenMM::operator*(double, OpenMM::Vec3)' defined but not used [-Wunused-function] 160 | static Vec3 operator*(double lhs, Vec3 rhs) { | ^~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,--as-needed -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/src/swig_doxygen/OpenMMSwig.o -L/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu -Wl,--enable-new-dtags,-R/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu -lOpenMM -lOpenMMAmoeba -lOpenMMRPMD -lOpenMMDrude -o build/lib.linux-x86_64-3.9/simtk/openmm/_openmm.cpython-39-x86_64-linux-gnu.so building 'simtk.openmm.app.internal.compiled' extension creating build/temp.linux-x86_64-3.9/simtk creating build/temp.linux-x86_64-3.9/simtk/openmm creating build/temp.linux-x86_64-3.9/simtk/openmm/app creating build/temp.linux-x86_64-3.9/simtk/openmm/app/internal x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c simtk/openmm/app/internal/compiled.cpp -o build/temp.linux-x86_64-3.9/simtk/openmm/app/internal/compiled.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,--as-needed -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/simtk/openmm/app/internal/compiled.o -o build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/compiled.cpython-39-x86_64-linux-gnu.so make[1]: Leaving directory '/build/openmm-7.5.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/openmm-7.5.0+dfsg' dh_auto_test cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu Start 1: TestReferenceAndersenThermostat Start 2: TestReferenceBrownianIntegrator Start 3: TestReferenceCMAPTorsionForce Start 4: TestReferenceCMMotionRemover Start 5: TestReferenceCheckpoints Start 6: TestReferenceCompoundIntegrator Start 7: TestReferenceCustomAngleForce Start 8: TestReferenceCustomBondForce Start 9: TestReferenceCustomCVForce Start 10: TestReferenceCustomCentroidBondForce Start 11: TestReferenceCustomCompoundBondForce Start 12: TestReferenceCustomExternalForce Start 13: TestReferenceCustomGBForce Start 14: TestReferenceCustomHbondForce Start 15: TestReferenceCustomIntegrator 1/119 Test #3: TestReferenceCMAPTorsionForce ................. Passed 0.22 sec Start 16: TestReferenceCustomManyParticleForce 2/119 Test #4: TestReferenceCMMotionRemover .................. Passed 0.26 sec Start 17: TestReferenceCustomNonbondedForce 3/119 Test #6: TestReferenceCompoundIntegrator ............... Passed 0.25 sec Start 18: TestReferenceCustomTorsionForce 4/119 Test #7: TestReferenceCustomAngleForce ................. Passed 0.25 sec Start 19: TestReferenceDispersionPME 5/119 Test #8: TestReferenceCustomBondForce .................. Passed 0.26 sec Start 20: TestReferenceEwald 6/119 Test #9: TestReferenceCustomCVForce .................... Passed 0.25 sec Start 21: TestReferenceGBSAOBCForce 7/119 Test #10: TestReferenceCustomCentroidBondForce .......... Passed 0.26 sec Start 22: TestReferenceGayBerneForce 8/119 Test #14: TestReferenceCustomHbondForce ................. Passed 0.22 sec Start 23: TestReferenceHarmonicAngleForce 9/119 Test #12: TestReferenceCustomExternalForce .............. Passed 0.28 sec Start 24: TestReferenceHarmonicBondForce 10/119 Test #11: TestReferenceCustomCompoundBondForce .......... Passed 0.31 sec Start 25: TestReferenceKineticEnergy 11/119 Test #18: TestReferenceCustomTorsionForce ............... Passed 0.17 sec Start 26: TestReferenceLangevinIntegrator 12/119 Test #23: TestReferenceHarmonicAngleForce ............... Passed 0.08 sec Start 27: TestReferenceLangevinMiddleIntegrator 13/119 Test #24: TestReferenceHarmonicBondForce ................ Passed 0.08 sec Start 28: TestReferenceLocalEnergyMinimizer 14/119 Test #25: TestReferenceKineticEnergy .................... Passed 0.08 sec Start 29: TestReferenceMonteCarloAnisotropicBarostat 15/119 Test #22: TestReferenceGayBerneForce .................... Passed 0.31 sec Start 30: TestReferenceMonteCarloBarostat 16/119 Test #5: TestReferenceCheckpoints ...................... Passed 0.96 sec Start 31: TestReferenceMonteCarloMembraneBarostat 17/119 Test #2: TestReferenceBrownianIntegrator ............... Passed 1.14 sec Start 32: TestReferenceNeighborList 18/119 Test #26: TestReferenceLangevinIntegrator ............... Passed 0.70 sec Start 33: TestReferenceNonbondedForce 19/119 Test #32: TestReferenceNeighborList ..................... Passed 0.34 sec Start 34: TestReferenceNoseHooverIntegrator 20/119 Test #1: TestReferenceAndersenThermostat ............... Passed 1.66 sec Start 35: TestReferencePeriodicTorsionForce 21/119 Test #35: TestReferencePeriodicTorsionForce ............. Passed 0.03 sec Start 36: TestReferenceRBTorsionForce 22/119 Test #36: TestReferenceRBTorsionForce ................... Passed 0.04 sec Start 37: TestReferenceRMSDForce 23/119 Test #37: TestReferenceRMSDForce ........................ Passed 0.03 sec Start 38: TestReferenceRandom 24/119 Test #13: TestReferenceCustomGBForce .................... Passed 1.58 sec Start 39: TestReferenceSettle 25/119 Test #39: TestReferenceSettle ........................... Passed 0.26 sec Start 40: TestReferenceVariableLangevinIntegrator 26/119 Test #38: TestReferenceRandom ........................... Passed 2.41 sec Start 41: TestReferenceVariableVerletIntegrator 27/119 Test #30: TestReferenceMonteCarloBarostat ............... Passed 3.64 sec Start 42: TestReferenceVerletIntegrator 28/119 Test #33: TestReferenceNonbondedForce ................... Passed 4.10 sec Start 43: TestReferenceVirtualSites 29/119 Test #43: TestReferenceVirtualSites ..................... Passed 0.26 sec Start 44: TestCpuCheckpoints 30/119 Test #15: TestReferenceCustomIntegrator ................. Passed 7.99 sec Start 45: TestCpuCompoundIntegrator 31/119 Test #27: TestReferenceLangevinMiddleIntegrator ......... Passed 7.81 sec Start 46: TestCpuCustomGBForce 32/119 Test #42: TestReferenceVerletIntegrator ................. Passed 4.68 sec Start 47: TestCpuCustomManyParticleForce 33/119 Test #31: TestReferenceMonteCarloMembraneBarostat ....... Passed 8.73 sec Start 48: TestCpuCustomNonbondedForce 34/119 Test #20: TestReferenceEwald ............................ Passed 9.58 sec Start 49: TestCpuDispersionPME 35/119 Test #28: TestReferenceLocalEnergyMinimizer ............. Passed 11.25 sec Start 50: TestCpuEwald 36/119 Test #21: TestReferenceGBSAOBCForce ..................... Passed 12.44 sec Start 51: TestCpuGBSAOBCForce 37/119 Test #29: TestReferenceMonteCarloAnisotropicBarostat .... Passed 13.37 sec Start 52: TestCpuGayBerneForce 38/119 Test #44: TestCpuCheckpoints ............................ Passed 8.48 sec Start 53: TestCpuHarmonicAngleForce 39/119 Test #53: TestCpuHarmonicAngleForce ..................... Passed 0.22 sec Start 54: TestCpuLangevinIntegrator 40/119 Test #46: TestCpuCustomGBForce .......................... Passed 8.76 sec Start 55: TestCpuLangevinMiddleIntegrator 41/119 Test #19: TestReferenceDispersionPME .................... Passed 20.01 sec Start 56: TestCpuNeighborList 42/119 Test #51: TestCpuGBSAOBCForce ........................... Passed 7.56 sec Start 57: TestCpuNonbondedForce 43/119 Test #56: TestCpuNeighborList ........................... Passed 0.52 sec Start 58: TestCpuPeriodicTorsionForce 44/119 Test #58: TestCpuPeriodicTorsionForce ................... Passed 0.22 sec Start 59: TestCpuRBTorsionForce 45/119 Test #59: TestCpuRBTorsionForce ......................... Passed 0.23 sec Start 60: TestCpuSettle 46/119 Test #50: TestCpuEwald .................................. Passed 12.78 sec Start 61: TestReferenceAmoebaAngleForce 47/119 Test #61: TestReferenceAmoebaAngleForce ................. Passed 0.04 sec Start 62: TestReferenceAmoebaBondForce 48/119 Test #62: TestReferenceAmoebaBondForce .................. Passed 0.04 sec Start 63: TestReferenceAmoebaExtrapolatedPolarization 49/119 Test #49: TestCpuDispersionPME .......................... Passed 19.12 sec Start 64: TestReferenceAmoebaGeneralizedKirkwoodForce 50/119 Test #57: TestCpuNonbondedForce ......................... Passed 10.16 sec Start 65: TestReferenceAmoebaInPlaneAngleForce 51/119 Test #65: TestReferenceAmoebaInPlaneAngleForce .......... Passed 0.03 sec Start 66: TestReferenceAmoebaMultipoleForce 52/119 Test #63: TestReferenceAmoebaExtrapolatedPolarization ... Passed 10.49 sec Start 67: TestReferenceAmoebaOutOfPlaneBendForce 53/119 Test #67: TestReferenceAmoebaOutOfPlaneBendForce ........ Passed 0.02 sec Start 68: TestReferenceAmoebaPiTorsionForce 54/119 Test #68: TestReferenceAmoebaPiTorsionForce ............. Passed 0.03 sec Start 69: TestReferenceAmoebaStretchBendForce 55/119 Test #69: TestReferenceAmoebaStretchBendForce ........... Passed 0.02 sec Start 70: TestReferenceAmoebaTorsionTorsionForce 56/119 Test #70: TestReferenceAmoebaTorsionTorsionForce ........ Passed 0.03 sec Start 71: TestReferenceAmoebaVdwForce 57/119 Test #71: TestReferenceAmoebaVdwForce ................... Passed 0.70 sec Start 72: TestReferenceHippoNonbondedForce 58/119 Test #52: TestCpuGayBerneForce .......................... Passed 22.21 sec Start 73: TestReferenceWcaDispersionForce 59/119 Test #73: TestReferenceWcaDispersionForce ............... Passed 0.02 sec Start 74: TestReferenceRpmd 60/119 Test #41: TestReferenceVariableVerletIntegrator ......... Passed 34.55 sec Start 75: TestReferenceDrudeForce 61/119 Test #72: TestReferenceHippoNonbondedForce .............. Passed 2.78 sec Start 76: TestReferenceDrudeLangevinIntegrator 62/119 Test #75: TestReferenceDrudeForce ....................... Passed 0.04 sec Start 77: TestReferenceDrudeNoseHoover 63/119 Test #34: TestReferenceNoseHooverIntegrator ............. Passed 38.12 sec Start 78: TestReferenceDrudeSCFIntegrator 64/119 Test #66: TestReferenceAmoebaMultipoleForce ............. Passed 9.34 sec Start 79: TestSerializationNode 65/119 Test #79: TestSerializationNode ......................... Passed 0.03 sec Start 80: TestSerializeAndersenThermostat 66/119 Test #80: TestSerializeAndersenThermostat ............... Passed 0.03 sec Start 81: TestSerializeCMAPTorsion 67/119 Test #81: TestSerializeCMAPTorsion ...................... Passed 0.01 sec Start 82: TestSerializeCMMotionRemover 68/119 Test #82: TestSerializeCMMotionRemover .................. Passed 0.02 sec Start 83: TestSerializeCustomAngleForce 69/119 Test #83: TestSerializeCustomAngleForce ................. Passed 0.03 sec Start 84: TestSerializeCustomBondForce 70/119 Test #84: TestSerializeCustomBondForce .................. Passed 0.02 sec Start 85: TestSerializeCustomCVForce 71/119 Test #85: TestSerializeCustomCVForce .................... Passed 0.02 sec Start 86: TestSerializeCustomCentroidBondForce 72/119 Test #86: TestSerializeCustomCentroidBondForce .......... Passed 0.02 sec Start 87: TestSerializeCustomCompoundBondForce 73/119 Test #87: TestSerializeCustomCompoundBondForce .......... Passed 0.02 sec Start 88: TestSerializeCustomExternalForce 74/119 Test #88: TestSerializeCustomExternalForce .............. Passed 0.02 sec Start 89: TestSerializeCustomGBForce 75/119 Test #89: TestSerializeCustomGBForce .................... Passed 0.01 sec Start 90: TestSerializeCustomHbondForce 76/119 Test #90: TestSerializeCustomHbondForce ................. Passed 0.02 sec Start 91: TestSerializeCustomManyParticleForce 77/119 Test #91: TestSerializeCustomManyParticleForce .......... Passed 0.03 sec Start 92: TestSerializeCustomNonbondedForce 78/119 Test #92: TestSerializeCustomNonbondedForce ............. Passed 0.01 sec Start 93: TestSerializeCustomTorsionForce 79/119 Test #93: TestSerializeCustomTorsionForce ............... Passed 0.03 sec Start 94: TestSerializeGBSAOBCForce 80/119 Test #94: TestSerializeGBSAOBCForce ..................... Passed 0.02 sec Start 95: TestSerializeGayBerneForce 81/119 Test #95: TestSerializeGayBerneForce .................... Passed 0.02 sec Start 96: TestSerializeHarmonicAngleForce 82/119 Test #96: TestSerializeHarmonicAngleForce ............... Passed 0.02 sec Start 97: TestSerializeHarmonicBondForce 83/119 Test #97: TestSerializeHarmonicBondForce ................ Passed 0.01 sec Start 98: TestSerializeIntegrator 84/119 Test #98: TestSerializeIntegrator ....................... Passed 0.04 sec Start 99: TestSerializeMonteCarloAnisotropicBarostat 85/119 Test #99: TestSerializeMonteCarloAnisotropicBarostat .... Passed 0.01 sec Start 100: TestSerializeMonteCarloBarostat 86/119 Test #100: TestSerializeMonteCarloBarostat ............... Passed 0.03 sec Start 101: TestSerializeMonteCarloMembraneBarostat 87/119 Test #101: TestSerializeMonteCarloMembraneBarostat ....... Passed 0.03 sec Start 102: TestSerializeNonbondedForce 88/119 Test #102: TestSerializeNonbondedForce ................... Passed 0.04 sec Start 103: TestSerializeNoseHooverIntegrator 89/119 Test #103: TestSerializeNoseHooverIntegrator ............. Passed 0.02 sec Start 104: TestSerializePeriodicTorsionForce 90/119 Test #104: TestSerializePeriodicTorsionForce ............. Passed 0.01 sec Start 105: TestSerializeRBTorsionForce 91/119 Test #105: TestSerializeRBTorsionForce ................... Passed 0.05 sec Start 106: TestSerializeRMSDForce 92/119 Test #106: TestSerializeRMSDForce ........................ Passed 0.02 sec Start 107: TestSerializeState 93/119 Test #107: TestSerializeState ............................ Passed 0.11 sec Start 108: TestSerializeSystem 94/119 Test #108: TestSerializeSystem ........................... Passed 0.02 sec Start 109: TestSerializeTabulatedFunctions 95/119 Test #109: TestSerializeTabulatedFunctions ............... Passed 0.04 sec Start 110: TestEnforcePeriodicBox 96/119 Test #110: TestEnforcePeriodicBox ........................ Passed 0.06 sec Start 111: TestFindExclusions 97/119 Test #111: TestFindExclusions ............................ Passed 0.02 sec Start 112: TestFindMolecules 98/119 Test #112: TestFindMolecules ............................. Passed 0.07 sec Start 113: TestParser 99/119 Test #113: TestParser .................................... Passed 0.18 sec Start 114: TestSplineFitter 100/119 Test #114: TestSplineFitter .............................. Passed 0.08 sec Start 115: TestSystem 101/119 Test #115: TestSystem .................................... Passed 0.04 sec Start 116: TestVectorExpression 102/119 Test #116: TestVectorExpression .......................... Passed 0.02 sec Start 117: TestVectorize 103/119 Test #117: TestVectorize ................................. Passed 0.03 sec Start 118: TestVectorizeAvx 104/119 Test #118: TestVectorizeAvx .............................. Passed 0.03 sec Start 119: TestVectorizeAvx2 105/119 Test #119: TestVectorizeAvx2 ............................. Passed 0.03 sec 106/119 Test #60: TestCpuSettle ................................. Passed 37.42 sec 107/119 Test #64: TestReferenceAmoebaGeneralizedKirkwoodForce ... Passed 32.54 sec 108/119 Test #47: TestCpuCustomManyParticleForce ................ Passed 59.53 sec 109/119 Test #77: TestReferenceDrudeNoseHoover .................. Passed 31.18 sec 110/119 Test #76: TestReferenceDrudeLangevinIntegrator .......... Passed 32.27 sec 111/119 Test #16: TestReferenceCustomManyParticleForce .......... Passed 73.82 sec 112/119 Test #48: TestCpuCustomNonbondedForce ................... Passed 75.20 sec 113/119 Test #45: TestCpuCompoundIntegrator ..................... Passed 78.19 sec 114/119 Test #78: TestReferenceDrudeSCFIntegrator ............... Passed 50.17 sec 115/119 Test #40: TestReferenceVariableLangevinIntegrator ....... Passed 91.26 sec 116/119 Test #55: TestCpuLangevinMiddleIntegrator ............... Passed 122.68 sec 117/119 Test #74: TestReferenceRpmd ............................. Passed 115.95 sec 118/119 Test #54: TestCpuLangevinIntegrator ..................... Passed 140.10 sec 119/119 Test #17: TestReferenceCustomNonbondedForce ............. Passed 232.39 sec 100% tests passed, 0 tests failed out of 119 Total Test time (real) = 233.01 sec make[2]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd obj-*/python/tests && PYTHONPATH=../build/lib.linux-$(arch)-$(py3versions -d | sed 's/^python//') pytest-3 ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests, configfile: pytest.ini collected 292 items TestAPIUnits.py ....................................... [ 13%] TestAmberInpcrdFile.py ...... [ 15%] TestAmberPrmtopFile.py .................... [ 22%] TestBytes.py . [ 22%] TestCharmmFiles.py ....s................. [ 30%] TestCheckpointReporter.py . [ 30%] TestDcdFile.py ... [ 31%] TestDesmondDMSFile.py ....... [ 33%] TestElement.py .... [ 35%] TestForceField.py s..................................s.. [ 48%] TestForceGroups.py ... [ 49%] TestGenerators.py .. [ 50%] TestGromacsGroFile.py . [ 50%] TestGromacsTopFile.py sssssssssssss [ 54%] TestIntegrators.py .s.... [ 56%] TestMetadynamics.py . [ 57%] TestModeller.py ............s............ [ 65%] TestNumpyCompatibility.py ........ [ 68%] TestPatches.py ..... [ 70%] TestPdbFile.py ..... [ 71%] TestPdbxFile.py ....... [ 74%] TestPickle.py . [ 74%] TestSimulatedTempering.py . [ 75%] TestSimulation.py ...... [ 77%] TestSwigWrappers.py . [ 77%] TestTopology.py ... [ 78%] TestUnitCell.py .. [ 79%] TestUnits.py ...................................................... [ 97%] TestVec3.py ....... [100%] =============================== warnings summary =============================== /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/__init__.py:16 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/__init__.py:16: DeprecationWarning: invalid escape sequence \p os.environ['PATH'] = '%(lib)s;%(lib)s\plugins;%(path)s' % { /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/openmm.py:1553 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/openmm.py:1553: DeprecationWarning: invalid escape sequence \S match = re.search("<([^?]\S*)", inputString) /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbstructure.py:1077 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbstructure.py:1077: DeprecationWarning: invalid escape sequence \. if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbstructure.py:1088 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbstructure.py:1088: DeprecationWarning: invalid escape sequence \. if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:347 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:347: DeprecationWarning: invalid escape sequence \S "(?:_(.+?)[.](\S+))" "|" # _category.attribute /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:349 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:349: DeprecationWarning: invalid escape sequence \s "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:350 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:350: DeprecationWarning: invalid escape sequence \s "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:352 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:352: DeprecationWarning: invalid escape sequence \s "(?:\s*#.*$)" "|" # comments (dumped) /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:354 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:354: DeprecationWarning: invalid escape sequence \S "(\S+)" # unquoted words /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:419 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:419: DeprecationWarning: invalid escape sequence \S "(?:_(.+?)[.](\S+))" "|" # _category.attribute /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:421 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:421: DeprecationWarning: invalid escape sequence \s "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:423 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:423: DeprecationWarning: invalid escape sequence \s "(?:\s*#.*$)" "|" # comments (dumped) /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:425 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py:425: DeprecationWarning: invalid escape sequence \S "(\S+)" # unquoted words /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/amber_file_parser.py:65 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/amber_file_parser.py:65: DeprecationWarning: invalid escape sequence \. FORMAT_RE_PATTERN=re.compile("([0-9]+)([a-zA-Z]+)([0-9]+)\.?([0-9]*)") /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/gromacsgrofile.py:64 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/gromacsgrofile.py:64: DeprecationWarning: invalid escape sequence \. return match('^[-+]?[0-9]*\.?[0-9]*([eEdD][-+]?[0-9]+)?$',word) /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/metadynamics.py:243 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/metadynamics.py:243: DeprecationWarning: invalid escape sequence \. pattern = re.compile('bias_(.*)_(.*)\.npy') TestAmberPrmtopFile.py::TestAmberPrmtopFile::testNucleicGBParametes TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolvent TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolventForces TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolventParameters /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/amber_file_parser.py:1018: UserWarning: Non-optimal GB parameters detected for GB model GBn warnings.warn( TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolvent TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolventForces TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolventParameters /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/amber_file_parser.py:1018: UserWarning: Non-optimal GB parameters detected for GB model HCT warnings.warn( TestForceField.py::TestForceField::test_ImpropersOrdering_smirnoff /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbstructure.py:537: UserWarning: WARNING: duplicate atom (HETATM 2 A 1 0.513 -1.098 -0.004 1.00 0.00 O , HETATM 1 A 1 0.095 0.011 0.000 1.00 0.00 C ) warnings.warn("WARNING: duplicate atom (%s, %s)" % (atom, old_atom._pdb_string(old_atom.serial_number, atom.alternate_location_indicator))) TestForceField.py::TestForceField::test_ImpropersOrdering_smirnoff /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbstructure.py:537: UserWarning: WARNING: duplicate atom (HETATM 3 A 1 -1.098 0.149 0.015 1.00 0.00 H , HETATM 2 A 1 0.513 -1.098 -0.004 1.00 0.00 O ) warnings.warn("WARNING: duplicate atom (%s, %s)" % (atom, old_atom._pdb_string(old_atom.serial_number, atom.alternate_location_indicator))) TestForceField.py::TestForceField::test_ImpropersOrdering_smirnoff /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbstructure.py:537: UserWarning: WARNING: duplicate atom (HETATM 4 A 1 0.590 0.938 -0.011 1.00 0.00 H , HETATM 3 A 1 -1.098 0.149 0.015 1.00 0.00 H ) warnings.warn("WARNING: duplicate atom (%s, %s)" % (atom, old_atom._pdb_string(old_atom.serial_number, atom.alternate_location_indicator))) -- Docs: https://docs.pytest.org/en/stable/warnings.html ========== 274 passed, 18 skipped, 26 warnings in 2032.06s (0:33:52) =========== make[1]: Leaving directory '/build/openmm-7.5.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake debian/rules override_dh_auto_install make[1]: Entering directory '/build/openmm-7.5.0+dfsg' dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/openmm-7.5.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openmm-7.5.0+dfsg -B/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/OpenMM.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/Kernel.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/KernelFactory.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/KernelImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/Platform.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/PluginInitializer.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/kernels.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AndersenThermostat.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/BrownianIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CMAPTorsionForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CMMotionRemover.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CompoundIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/Context.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomAngleForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomBondForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomCVForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomCentroidBondForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomCompoundBondForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomExternalForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomGBForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomHbondForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomManyParticleForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomNonbondedForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/CustomTorsionForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/Force.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/GBSAOBCForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/GayBerneForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/HarmonicAngleForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/HarmonicBondForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/Integrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/LangevinIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/LangevinMiddleIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/LocalEnergyMinimizer.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/MonteCarloAnisotropicBarostat.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/MonteCarloBarostat.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/MonteCarloMembraneBarostat.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/NonbondedForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/NoseHooverChain.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/NoseHooverIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/OpenMMException.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/PeriodicTorsionForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/RBTorsionForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/RMSDForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/State.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/System.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/TabulatedFunction.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/Units.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/VariableLangevinIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/VariableVerletIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/Vec3.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/VerletIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/VirtualSite.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AndersenThermostatImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AssertionUtilities.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CMAPTorsionForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CMMotionRemoverImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CompiledExpressionSet.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/ContextImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomAngleForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomBondForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomCVForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomCentroidBondForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomCompoundBondForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomExternalForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomGBForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomHbondForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomIntegratorUtilities.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomManyParticleForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomNonbondedForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomTorsionForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/ForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/GBSAOBCForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/GayBerneForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/HarmonicAngleForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/HarmonicBondForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/MSVC_erfc.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/MonteCarloAnisotropicBarostatImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/MonteCarloBarostatImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/MonteCarloMembraneBarostatImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/NonbondedForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/OSRngSeed.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/PeriodicTorsionForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/RBTorsionForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/RMSDForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/SplineFitter.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/ThreadPool.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/VectorExpression.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/hardware.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/timer.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorizeAvx.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorizeAvx2.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize_neon.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize_pnacl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize_ppc.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize_sse.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/windowsExport.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ObcParameters.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/RealVec.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceAndersenThermostat.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceAngleBondIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceBondForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceBondIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceBrownianDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCCMAAlgorithm.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCMAPTorsionIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceConstraintAlgorithm.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceConstraints.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomAngleIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomBondIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomCVForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomCentroidBondIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomCompoundBondIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomExternalIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomGBIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomHbondIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomManyParticleIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomNonbondedIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomTorsionIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceGayBerneForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceHarmonicBondIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceKernelFactory.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceKernels.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceLJCoulomb14.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceLJCoulombIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceLangevinMiddleDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceLincsAlgorithm.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceMonteCarloBarostat.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceNeighborList.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceNoseHooverChain.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceNoseHooverDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceObc.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferencePME.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferencePairIxn.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferencePlatform.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceProperDihedralBond.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceRMSDForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceRbDihedralBond.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceSETTLEAlgorithm.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceStochasticDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceTabulatedFunction.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceVariableStochasticDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceVariableVerletDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceVerletDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceVirtualSites.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/SimTKOpenMMRealType.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/SimTKOpenMMUtilities.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/reference/fftpack.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/CompiledExpression.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/CustomFunction.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/Exception.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/ExpressionProgram.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/ExpressionTreeNode.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/Operation.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/ParsedExpression.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/Parser.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/lepton/windowsIncludes.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/sfmt/SFMT.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/libOpenMM.so.7.5 -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/libOpenMM.so -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/bin/TestReferenceHarmonicBondForce -- Set runtime path of "/build/openmm-7.5.0+dfsg/debian/tmp/usr/bin/TestReferenceHarmonicBondForce" to "" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/AlignedArray.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuBondForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuCustomGBForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuCustomManyParticleForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuCustomNonbondedForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuGBSAOBCForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuGayBerneForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuKernelFactory.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuKernels.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuLangevinDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuLangevinMiddleDynamics.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuNeighborList.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuNonbondedForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuNonbondedForceFvec.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuPlatform.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuRandom.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuSETTLE.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/cpu/windowsExportCpu.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMCPU.so -- Set runtime path of "/build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMCPU.so" to "" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/OpenMMAmoeba.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaAngleForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaBondForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaGeneralizedKirkwoodForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaInPlaneAngleForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaMultipoleForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaOutOfPlaneBendForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaPiTorsionForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaStretchBendForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaTorsionTorsionForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaVdwForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/AmoebaWcaDispersionForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/HippoNonbondedForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/amoebaKernels.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaAngleForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaBondForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaGeneralizedKirkwoodForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaInPlaneAngleForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaMultipoleForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaOutOfPlaneBendForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaPiTorsionForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaStretchBendForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaTorsionTorsionForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaVdwForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaWcaDispersionForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/HippoNonbondedForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/windowsExportAmoeba.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/libOpenMMAmoeba.so -- Set runtime path of "/build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/libOpenMMAmoeba.so" to "" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMAmoebaReference.so -- Set runtime path of "/build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMAmoebaReference.so" to "" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/RPMDIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/RPMDMonteCarloBarostat.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/RPMDUpdater.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/RpmdKernels.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/RPMDMonteCarloBarostatImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/windowsExportRpmd.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/libOpenMMRPMD.so -- Set runtime path of "/build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/libOpenMMRPMD.so" to "" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMRPMDReference.so -- Set runtime path of "/build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMRPMDReference.so" to "" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/OpenMMDrude.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/DrudeForce.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/DrudeIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/DrudeKernels.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/DrudeLangevinIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/DrudeNoseHooverIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/DrudeSCFIntegrator.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/DrudeForceImpl.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/internal/windowsExportDrude.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/libOpenMMDrude.so -- Set runtime path of "/build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/libOpenMMDrude.so" to "" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMDrudeReference.so -- Set runtime path of "/build/openmm-7.5.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMDrudeReference.so" to "" -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/serialization/SerializationNode.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/serialization/SerializationProxy.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/openmm/serialization/XmlSerializer.h -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/swig/OpenMMSwigHeaders.i -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/include/swig/typemaps.i -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/licenses/GPL.txt -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/licenses/LGPL.txt -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/licenses/Licenses.txt -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/HelloArgon.cpp -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/HelloSodiumChloride.cpp -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/HelloEthane.cpp -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/HelloWaterBox.cpp -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/HelloArgonInC.c -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/HelloSodiumChlorideInC.c -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/HelloArgonInFortran.f90 -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/HelloSodiumChlorideInFortran.f90 -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/simulateAmber.py -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/simulatePdb.py -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/simulateGromacs.py -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/benchmark.py -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/argon-chemical-potential.py -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/input.inpcrd -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/input.prmtop -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/input.pdb -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/input.gro -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/input.top -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/5dfr_minimized.pdb -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/5dfr_solv-cube_equil.pdb -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/apoa1.pdb -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgon.vcproj -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgon.sln -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgonInC.sln -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgonInC.vcproj -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgonInFortran.sln -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgonInFortran.vfproj -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/README.txt -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/Makefile -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/NMakefile -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/MakefileNotes.txt -- Installing: /build/openmm-7.5.0+dfsg/debian/tmp/usr/examples/Empty.cpp make[2]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' dh_install -plibopenmm7.5 debian/tmp/usr/lib/libOpenMM.so.* usr/lib/x86_64-linux-gnu dh_install -plibopenmm-dev debian/tmp/usr/lib/libOpenMM.so usr/lib/x86_64-linux-gnu # cd obj-*/python && python3 setup.py install --install-layout=deb --root=/build/openmm-7.5.0+dfsg/debian/tmp # dh_python3 # find debian/python3-simtk -name '*.py' \ # | xargs sed -i 's/^#!\/bin\/env python/#!\/usr\/bin\/python3/' make[1]: Leaving directory '/build/openmm-7.5.0+dfsg' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/openmm-7.5.0+dfsg' dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libopenmm7.5/usr/lib/x86_64-linux-gnu/libOpenMM.so.7.5 was not linked against librt.so.1 (it uses none of the library's symbols) make[1]: Leaving directory '/build/openmm-7.5.0+dfsg' dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libopenmm7.5-dbgsym' in '../libopenmm7.5-dbgsym_7.5.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'libopenmm7.5' in '../libopenmm7.5_7.5.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'libopenmm-dev' in '../libopenmm-dev_7.5.0+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../openmm_7.5.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/73363/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/73363/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/73363 and its subdirectories I: Current time: Fri Dec 31 20:16:01 +14 2021 I: pbuilder-time-stamp: 1640931361