I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 30 11:34:09 -12 2021 I: pbuilder-time-stamp: 1640907249 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pftools_3.2.6-1.dsc] I: copying [./pftools_3.2.6.orig.tar.gz] I: copying [./pftools_3.2.6-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ZfBmp6jF/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 17 20:57:23 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pftools_3.2.6-1.dsc dpkg-source: info: extracting pftools in pftools-3.2.6 dpkg-source: info: unpacking pftools_3.2.6.orig.tar.gz dpkg-source: info: unpacking pftools_3.2.6-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying 0001-Harmonize-bin-env-path-Cleaning.patch dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying destdir_for_examples.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3142527/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4f72df9c841e452f887781948fbcbbd7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3142527' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.P0DKRlJY5o/pbuilderrc_fqE2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.P0DKRlJY5o/b1 --logfile b1/build.log pftools_3.2.6-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 20 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/3142527/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gfortran, cmake, libfile-slurp-perl, libbz2-dev, libpcre3-dev, libreadline-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libfile-slurp-perl; however: Package libfile-slurp-perl is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libpcre3-dev; however: Package libpcre3-dev is not installed. pbuilder-satisfydepends-dummy depends on libreadline-dev; however: Package libreadline-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbz2-dev{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-slurp-perl{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libprocps8{a} libpsl5{a} libreadline-dev{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 65 newly installed, 0 to remove and 0 not upgraded. Need to get 41.7 MB of archives. After unpacking 152 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libgfortran-10-dev amd64 10.2.1-6 [769 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 gfortran-10 amd64 10.2.1-6 [9447 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 gfortran amd64 4:10.2.1-1 [1428 B] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libbz2-dev amd64 1.0.8-4 [30.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libfile-slurp-perl all 9999.32-1 [28.1 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libncurses-dev amd64 6.2+20201114-2 [344 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libpcre16-3 amd64 2:8.39-13 [259 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libpcre32-3 amd64 2:8.39-13 [250 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libpcrecpp0v5 amd64 2:8.39-13 [152 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libpcre3-dev amd64 2:8.39-13 [650 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libreadline-dev amd64 8.1-1 [148 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Fetched 41.7 MB in 1s (62.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../06-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../07-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../08-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../09-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../10-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../11-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../12-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../13-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../14-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../15-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../21-cmake-data_3.18.4-2+deb11u1_all.deb ... Unpacking cmake-data (3.18.4-2+deb11u1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pftools-3.2.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pftools_3.2.6-1_source.changes dpkg-buildpackage: info: source package pftools dpkg-buildpackage: info: source version 3.2.6-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pftools-3.2.6' dh_auto_clean rm -rf data/test.* make[1]: Leaving directory '/build/pftools-3.2.6' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/pftools-3.2.6' if [ ! -e src/C/config.h.cmake ] ; then cp -a debian/missing-sources/config.h.cmake src/C/ ; fi dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- +--------------------------------------------------------------------+ -- | PfTools v3.2.6 | -- +--------------------------------------------------------------------+ -- | (C) Copyright SIB Swiss Institute of Bioinformatics | -- | Thierry Schuepbach (projects@vital-it.ch) | -- | | -- | PfTools is available from | -- | https://github.com/sib-swiss/pftools3 | -- | under the GPL v2. See LICENSE. | -- | | -- +--------------------------------------------------------------------+ -- The Fortran compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/f95 - skipped -- Checking whether /usr/bin/f95 supports Fortran 90 -- Checking whether /usr/bin/f95 supports Fortran 90 - yes -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compilation on architecture x86_64. -- Performing Test HANDLE_SSE -- Performing Test HANDLE_SSE - Success -- Performing Test HANDLE_SSE2 -- Performing Test HANDLE_SSE2 - Success -- testing flag -msse4.1... -- Performing Test HANDLE_SSE41 -- Performing Test HANDLE_SSE41 - Success -- Performing Test HANDLE_C99 -- Performing Test HANDLE_C99 - Success -- Add -std=c99 to C compiler options -- Add SSE2 to C compiler options -- Performing Test MS_EXTENSION -- Performing Test MS_EXTENSION - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Perl: /usr/bin/perl (found version "5.32.1") -- Perl found - full test suite usable -- Found PCRE: /usr/lib/x86_64-linux-gnu/libpcre.so -- Looking for include file emmintrin.h -- Looking for include file emmintrin.h - found -- Looking for include file smmintrin.h -- Looking for include file smmintrin.h - found -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file alloca.h -- Looking for include file alloca.h - found -- Check Perl script syntax compare_2_profiles.pl - syntax OK fasta_to_fastq.pl - syntax OK make_iupac_cmp.pl - syntax OK ps_scan.pl - syntax OK scramble_fasta.pl - syntax OK sort_fasta.pl - syntax OK split_profile_file.pl - syntax OK -- -- PfTools Software Suite configuration summary: -- -- System name ......................: Linux -- Build type .......................: None -- -- Integer format ...................: 16 bits -- -- Install prefix .................. : /usr -- C compiler ...................... : /usr/bin/cc -- Fortran compiler ................ : /usr/bin/f95 -- C compiler flags ................ : -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -- C compiler SSE2 flag. ........... : -msse2 -- C compiler SSE 4.1 flag.......... : -msse4.1 -- Fortran compiler flags .......... : -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -- -- Use file memory mapping ..........: ON -- Use thread affinity setting ......: ON -- -- Build shared libs ............... : OFF -- Build static libs ............... : OFF -- Build static executables......... : OFF -- -- Link with pcre .................. : ON -- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/pftools-3.2.6/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/pftools-3.2.6' dh_auto_build cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pftools-3.2.6 -B/build/pftools-3.2.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 Re-run cmake, missing byproduct: Tests/examples/test_V2.sh.tmp -- +--------------------------------------------------------------------+ -- | PfTools v3.2.6 | -- +--------------------------------------------------------------------+ -- | (C) Copyright SIB Swiss Institute of Bioinformatics | -- | Thierry Schuepbach (projects@vital-it.ch) | -- | | -- | PfTools is available from | -- | https://github.com/sib-swiss/pftools3 | -- | under the GPL v2. See LICENSE. | -- | | -- +--------------------------------------------------------------------+ -- Compilation on architecture x86_64. -- testing flag -msse4.1... -- Add -std=c99 to C compiler options -- Add SSE2 to C compiler options -- Perl found - full test suite usable -- Building test suite for pfsearch in /build/pftools-3.2.6/obj-x86_64-linux-gnu/Tests -- Check Perl script syntax compare_2_profiles.pl - syntax OK fasta_to_fastq.pl - syntax OK make_iupac_cmp.pl - syntax OK ps_scan.pl - syntax OK scramble_fasta.pl - syntax OK sort_fasta.pl - syntax OK split_profile_file.pl - syntax OK -- -- PfTools Software Suite configuration summary: -- -- System name ......................: Linux -- Build type .......................: None -- -- Integer format ...................: 16 bits -- -- Install prefix .................. : /usr -- C compiler ...................... : /usr/bin/cc -- Fortran compiler ................ : /usr/bin/f95 -- C compiler flags ................ : -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -- C compiler SSE2 flag. ........... : -msse2 -- C compiler SSE 4.1 flag.......... : -msse4.1 -- Fortran compiler flags .......... : -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -- -- Use file memory mapping ..........: ON -- Use thread affinity setting ......: ON -- -- Build shared libs ............... : OFF -- Build static libs ............... : OFF -- Build static executables......... : OFF -- -- Link with pcre .................. : ON -- -- Configuring done -- Generating done -- Build files have been written to: /build/pftools-3.2.6/obj-x86_64-linux-gnu /usr/bin/cmake -E cmake_progress_start /build/pftools-3.2.6/obj-x86_64-linux-gnu/CMakeFiles /build/pftools-3.2.6/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/depend make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/DependInfo.cmake --color= make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/depend make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/depend make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/depend make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/sse41 /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/sse2 /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/DependInfo.cmake --color= make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/depend Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/depend.internal". Scanning dependencies of target SSE41 make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/DependInfo.cmake --color= make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/depend Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/depend.internal". make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/depend.internal". make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target SSE2 make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/build Scanning dependencies of target PROFILES make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend.internal". make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/build Scanning dependencies of target OUTPUT_FORMAT Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/depend.internal". make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/build make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target pfpam Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/depend.internal". Scanning dependencies of target SEQUENCES Scanning dependencies of target REGEXP Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/depend.internal". make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target SYSTEM make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/build [ 1%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o [ 2%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/heuristic_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/heuristic_sse2.c cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xali1_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xali1_sse41.c [ 4%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/io.c.o make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/build cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c [ 5%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o [ 7%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o [ 8%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xalip_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xalip_sse41.c [ 10%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/profile.c.o -c /build/pftools-3.2.6/src/C/utils/profile.c [ 11%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o [ 14%] Building C object src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o [ 14%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/heuristic_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/heuristic_sse41.c cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xali1_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/xali1_sse2.c [ 16%] Building C object src/C/CMakeFiles/REGEXP.dir/utils/pfregexp.c.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xalip_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/xalip_sse2.c cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -c /build/pftools-3.2.6/src/C/utils/output.c cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -I/usr/include -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -c /build/pftools-3.2.6/src/C/utils/pfregexp.c cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xalit_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xalit_sse41.c [ 17%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o [ 19%] Building C object src/C/utils/CMakeFiles/SYSTEM.dir/system.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/Normalization.c.o -c /build/pftools-3.2.6/src/C/utils/Normalization.c cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/SYSTEM.dir/system.c.o -c /build/pftools-3.2.6/src/C/utils/system.c [ 20%] Building C object src/C/utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -c /build/pftools-3.2.6/src/C/utils/ReadSequence.c [ 22%] Building C object src/C/CMakeFiles/pfpam.dir/utils/pam.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/pam.c.o -c /build/pftools-3.2.6/src/C/utils/pam.c [ 23%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xalit_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/xalit_sse2.c [ 25%] Building C object src/C/CMakeFiles/pfpam.dir/utils/io.c.o make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/depend cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake --color= [ 26%] Building C object src/C/CMakeFiles/pfpam.dir/utils/random.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/random.c.o -c /build/pftools-3.2.6/src/C/utils/random.c make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/depend.internal". Scanning dependencies of target quantile make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend.internal". Scanning dependencies of target SEQUENCES_EXTRA make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/depend.internal". Scanning dependencies of target pfsplit make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 26%] Built target REGEXP make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake --color= [ 28%] Building Fortran object src/Fortran/CMakeFiles/quantile.dir/rq0.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -c /build/pftools-3.2.6/src/Fortran/rq0.f -o CMakeFiles/quantile.dir/rq0.f.o [ 29%] Building C object src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -c /build/pftools-3.2.6/src/C/utils/pam.c [ 31%] Building C object src/C/CMakeFiles/pfsplit.dir/prg/split.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfsplit.dir/prg/split.c.o -c /build/pftools-3.2.6/src/C/prg/split.c Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". Scanning dependencies of target gtop make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/depend make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake --color= make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". Scanning dependencies of target ptoh [ 32%] Building Fortran object src/Fortran/CMakeFiles/gtop.dir/gtop.f.o make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/build cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/gtop.f -o CMakeFiles/gtop.dir/gtop.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 34%] Building Fortran object src/Fortran/CMakeFiles/ptoh.dir/ptoh.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/ptoh.f -o CMakeFiles/ptoh.dir/ptoh.f.o [ 34%] Built target SEQUENCES make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". [ 35%] Building C object src/Fortran/CMakeFiles/gtop.dir/io.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/gtop.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c Scanning dependencies of target htop make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/build [ 37%] Linking C executable pfsplit make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsplit.dir/link.txt --verbose=1 [ 38%] Building Fortran object src/Fortran/CMakeFiles/htop.dir/htop.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/htop.f -o CMakeFiles/htop.dir/htop.f.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfsplit.dir/prg/split.c.o -o pfsplit make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target 2ft make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/depend [ 38%] Built target SSE41 make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake --color= make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/depend make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 40%] Building Fortran object src/Fortran/CMakeFiles/2ft.dir/2ft.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake --color= cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/2ft.f -o CMakeFiles/2ft.dir/2ft.f.o Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". [ 40%] Built target pfsplit Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". Scanning dependencies of target pfmake make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/depend make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake --color= make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/build Scanning dependencies of target pfsearch make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/build rhmmer2.f:265:17: Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) rhmmer2.f:265:29: Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) rhmmer2.f:274:17: Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) rhmmer2.f:274:29: Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". Scanning dependencies of target pfscale Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". [ 41%] Building Fortran object src/Fortran/CMakeFiles/pfmake.dir/pfmake.f.o [ 43%] Building Fortran object src/Fortran/CMakeFiles/pfsearch.dir/pfsearch.f.o make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target ptof make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/build cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfmake.f -o CMakeFiles/pfmake.dir/pfmake.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfsearch.f -o CMakeFiles/pfsearch.dir/pfsearch.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 43%] Built target SEQUENCES_EXTRA make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/depend [ 44%] Building Fortran object src/Fortran/CMakeFiles/ptof.dir/ptof.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/ptof.f -o CMakeFiles/ptof.dir/ptof.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake --color= [ 46%] Building Fortran object src/Fortran/CMakeFiles/pfscale.dir/pfscale.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfscale.f -o CMakeFiles/pfscale.dir/pfscale.f.o [ 46%] Built target SYSTEM make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". Scanning dependencies of target pfw [ 46%] Built target SSE2 make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/depend make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake --color= [ 47%] Building C object src/Fortran/CMakeFiles/pfw.dir/io.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/pfw.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". Scanning dependencies of target 6ft make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/build Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". Scanning dependencies of target psa2msa make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 47%] Built target quantile make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake --color= [ 49%] Building Fortran object src/Fortran/CMakeFiles/6ft.dir/6ft.f.o Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/6ft.f -o CMakeFiles/6ft.dir/6ft.f.o [ 50%] Building C object src/Fortran/CMakeFiles/psa2msa.dir/io.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/psa2msa.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c Scanning dependencies of target pfscan make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 52%] Building Fortran object src/Fortran/CMakeFiles/pfw.dir/pfw.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfw.f -o CMakeFiles/pfw.dir/pfw.f.o [ 53%] Building Fortran object src/Fortran/CMakeFiles/pfscan.dir/pfscan.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfscan.f -o CMakeFiles/pfscan.dir/pfscan.f.o /build/pftools-3.2.6/src/Fortran/pfw.f:530:72: 530 | IF(J.GT.97.OR.J.LT.1) PAUSE | 1 Warning: Deleted feature: PAUSE statement at (1) [ 55%] Building Fortran object src/Fortran/CMakeFiles/psa2msa.dir/psa2msa.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/psa2msa.f -o CMakeFiles/psa2msa.dir/psa2msa.f.o [ 56%] Linking Fortran executable 2ft cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/2ft.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/2ft.dir/2ft.f.o -o 2ft make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 56%] Built target OUTPUT_FORMAT make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/depend.internal". Scanning dependencies of target pfindex make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 58%] Building C object src/C/CMakeFiles/pfindex.dir/prg/pfindex.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfindex.dir/prg/pfindex.c.o -c /build/pftools-3.2.6/src/C/prg/pfindex.c [ 58%] Built target 2ft make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/depend.internal". Scanning dependencies of target CALIBRATION make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 59%] Linking Fortran executable 6ft cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/6ft.dir/link.txt --verbose=1 [ 61%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/random.c.o -c /build/pftools-3.2.6/src/C/utils/random.c [ 62%] Linking Fortran executable psa2msa cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/psa2msa.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/6ft.dir/6ft.f.o -o 6ft /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/psa2msa.dir/io.c.o CMakeFiles/psa2msa.dir/psa2msa.f.o -o psa2msa /build/pftools-3.2.6/src/C/prg/pfindex.c: In function 'Usage': /build/pftools-3.2.6/src/C/prg/pfindex.c:84:39: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfindex.c:84:55: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); | ^~~~~~~~ make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 64%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/histogram.c.o -c /build/pftools-3.2.6/src/C/utils/histogram.c [ 64%] Built target 6ft make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/depend.internal". Scanning dependencies of target pfdump make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 64%] Built target psa2msa [ 65%] Building C object src/C/CMakeFiles/pfdump.dir/utils/io.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_TEST -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfdump.dir/utils/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c [ 67%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/quantileregression.c.o -c /build/pftools-3.2.6/src/C/utils/quantileregression.c [ 68%] Linking C executable pfindex cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfindex.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfindex.dir/prg/pfindex.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -o pfindex make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 68%] Built target pfindex [ 70%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/generatesequences.c.o -c /build/pftools-3.2.6/src/C/utils/generatesequences.c make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 70%] Built target PROFILES make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/DependInfo.cmake --color= make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/depend.internal". Scanning dependencies of target pfscanV3 Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/depend.internal". Scanning dependencies of target pfsearchV3 make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 71%] Building C object src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -c /build/pftools-3.2.6/src/C/prg/pfscan.c [ 73%] Linking C executable pfpam cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfpam.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfpam.dir/utils/pam.c.o CMakeFiles/pfpam.dir/utils/io.c.o CMakeFiles/pfpam.dir/utils/random.c.o -o pfpam [ 74%] Building C object src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -I/usr/include -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o -c /build/pftools-3.2.6/src/C/prg/pfsearch.c [ 76%] Linking Fortran executable pfw cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfw.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfw.dir/io.c.o CMakeFiles/pfw.dir/pfw.f.o -o pfw make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /build/pftools-3.2.6/src/C/prg/pfscan.c: In function 'Usage': /build/pftools-3.2.6/src/C/prg/pfscan.c:154:41: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfscan.c:154:57: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfscan.c: In function 'main': /build/pftools-3.2.6/src/C/prg/pfscan.c:368:10: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 368 | fputs(HEADER | ^~~~~~ /build/pftools-3.2.6/src/C/prg/pfscan.c:26:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 26 | "| Built on " __DATE__ " at " __TIME__ ". |\n" | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfscan.c:368:10: note: in expansion of macro 'HEADER' 368 | fputs(HEADER | ^~~~~~ Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/depend.internal". Scanning dependencies of target pfemit /build/pftools-3.2.6/src/C/prg/pfsearch.c: In function 'Usage': /build/pftools-3.2.6/src/C/prg/pfsearch.c:191:39: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfsearch.c:191:55: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfsearch.c: In function 'main': /build/pftools-3.2.6/src/C/prg/pfsearch.c:494:9: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 494 | fputs(HEADER | ^~~~~~ /build/pftools-3.2.6/src/C/prg/pfsearch.c:33:15: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 33 | "| Built on " __DATE__ " at " __TIME__ ". |\n" | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfsearch.c:494:9: note: in expansion of macro 'HEADER' 494 | fputs(HEADER | ^~~~~~ make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 76%] Built target pfpam make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 77%] Building C object src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfemit.dir/utils/generatesequences.c.o -c /build/pftools-3.2.6/src/C/utils/generatesequences.c [ 77%] Built target pfw [ 79%] Building C object src/C/CMakeFiles/pfemit.dir/utils/random.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfemit.dir/utils/random.c.o -c /build/pftools-3.2.6/src/C/utils/random.c make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 79%] Built target CALIBRATION make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/depend.internal". Scanning dependencies of target pfcalibrateV3 make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 80%] Building C object src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -c /build/pftools-3.2.6/src/C/prg/pfcalibrate.c /build/pftools-3.2.6/src/C/prg/pfcalibrate.c: In function 'Usage': /build/pftools-3.2.6/src/C/prg/pfcalibrate.c:287:42: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 287 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfcalibrate.c:287:58: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 287 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfcalibrate.c: In function 'main': /build/pftools-3.2.6/src/C/prg/pfcalibrate.c:963:9: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 963 | fputs(HEADER | ^~~~~~ /build/pftools-3.2.6/src/C/prg/pfcalibrate.c:49:15: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 49 | "| Built on " __DATE__ " at " __TIME__ ". |\n" | ^~~~~~~~ /build/pftools-3.2.6/src/C/prg/pfcalibrate.c:963:9: note: in expansion of macro 'HEADER' 963 | fputs(HEADER | ^~~~~~ [ 82%] Linking C executable pfemit cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfemit.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfemit.dir/utils/generatesequences.c.o CMakeFiles/pfemit.dir/utils/random.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o -o pfemit -lm [ 83%] Linking Fortran executable ptoh cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptoh.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/ptoh.dir/ptoh.f.o -o ptoh [ 85%] Linking Fortran executable gtop cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtop.dir/link.txt --verbose=1 [ 85%] Built target pfemit /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/gtop.dir/gtop.f.o CMakeFiles/gtop.dir/io.c.o -o gtop make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 85%] Built target ptoh make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 85%] Built target gtop [ 86%] Linking C executable pfscanV3 cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscanV3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfscanV3.dir/prg/pfscan.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfscanV3 /usr/lib/x86_64-linux-gnu/libpcre.so -lm -lpthread make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 86%] Built target pfscanV3 [ 88%] Linking C executable pfdump cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfdump.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfdump.dir/utils/io.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -o pfdump /usr/lib/x86_64-linux-gnu/libpcre.so make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 88%] Built target pfdump [ 89%] Linking Fortran executable htop cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/htop.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/htop.dir/htop.f.o -o htop [ 91%] Linking C executable pfcalibrateV3 cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfcalibrateV3.dir/link.txt --verbose=1 [ 92%] Linking Fortran executable pfscale cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscale.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o utils/CMakeFiles/CALIBRATION.dir/random.c.o utils/CMakeFiles/CALIBRATION.dir/histogram.c.o utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o ../Fortran/CMakeFiles/quantile.dir/rq0.f.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfcalibrateV3 -lm -lpthread -lgfortran -lm -lquadmath -lm make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfscale.dir/pfscale.f.o -o pfscale [ 92%] Built target htop /usr/bin/ld: CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o: in function `main': ./obj-x86_64-linux-gnu/src/C/./src/C/prg/pfcalibrate.c:1383: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 94%] Linking Fortran executable ptof cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptof.dir/link.txt --verbose=1 [ 94%] Built target pfcalibrateV3 make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/ptof.dir/ptof.f.o -o ptof [ 94%] Built target pfscale make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 94%] Built target ptof [ 95%] Linking C executable pfsearchV3 cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearchV3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfsearchV3 /usr/lib/x86_64-linux-gnu/libpcre.so -lm -lpthread make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 95%] Built target pfsearchV3 [ 97%] Linking Fortran executable pfmake cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfmake.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfmake.dir/pfmake.f.o -o pfmake make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 97%] Built target pfmake [ 98%] Linking Fortran executable pfscan cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscan.dir/link.txt --verbose=1 [100%] Linking Fortran executable pfsearch /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfscan.dir/pfscan.f.o -o pfscan cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearch.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfsearch.dir/pfsearch.f.o -o pfsearch make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [100%] Built target pfscan [100%] Built target pfsearch make[2]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/pftools-3.2.6/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/pftools-3.2.6' dh_auto_test --no-parallel cd obj-x86_64-linux-gnu && make -j1 test ARGS\+=-j1 make[2]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j1 Test project /build/pftools-3.2.6/obj-x86_64-linux-gnu Start 1: execute_test_V2.sh 1/5 Test #1: execute_test_V2.sh ................. Passed 1.08 sec Start 2: execute_test_V3.sh 2/5 Test #2: execute_test_V3.sh ................. Passed 48.43 sec Start 3: check_output_of_test_V3.sh 3/5 Test #3: check_output_of_test_V3.sh ......... Passed 72.98 sec Start 4: execute_test_scan_search.pl 4/5 Test #4: execute_test_scan_search.pl ........ Passed 46.86 sec Start 5: execute_test_pfsearchV3_iupac.pl 5/5 Test #5: execute_test_pfsearchV3_iupac.pl ... Passed 61.37 sec 100% tests passed, 0 tests failed out of 5 Total Test time (real) = 230.73 sec make[2]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' export PATH=/build/pftools-3.2.6/src/Fortran/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games ; \ echo ${PATH} ; \ cd data ; \ . ./test.sh | \ sed -e '/^MA/s/\(N_SCORE=[68].5\)0*/\1/' \ -e '/^DT */d' > test.build ; \ grep -v '^DT *' test.out > test.compare ; \ diff -u test.compare test.build || true /build/pftools-3.2.6/src/Fortran/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games /bin/sh: 4: .: cannot open ./test.sh: No such file grep: test.out: No such file or directory make[1]: Leaving directory '/build/pftools-3.2.6' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/pftools-3.2.6' dh_auto_install cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/pftools-3.2.6/debian/pftools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pftools-3.2.6 -B/build/pftools-3.2.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- +--------------------------------------------------------------------+ -- | PfTools v3.2.6 | -- +--------------------------------------------------------------------+ -- | (C) Copyright SIB Swiss Institute of Bioinformatics | -- | Thierry Schuepbach (projects@vital-it.ch) | -- | | -- | PfTools is available from | -- | https://github.com/sib-swiss/pftools3 | -- | under the GPL v2. See LICENSE. | -- | | -- +--------------------------------------------------------------------+ -- Compilation on architecture x86_64. -- testing flag -msse4.1... -- Add -std=c99 to C compiler options -- Add SSE2 to C compiler options -- Perl found - full test suite usable -- Building test suite for pfsearch in /build/pftools-3.2.6/obj-x86_64-linux-gnu/Tests -- Check Perl script syntax compare_2_profiles.pl - syntax OK fasta_to_fastq.pl - syntax OK make_iupac_cmp.pl - syntax OK ps_scan.pl - syntax OK scramble_fasta.pl - syntax OK sort_fasta.pl - syntax OK split_profile_file.pl - syntax OK -- -- PfTools Software Suite configuration summary: -- -- System name ......................: Linux -- Build type .......................: None -- -- Integer format ...................: 16 bits -- -- Install prefix .................. : /usr -- C compiler ...................... : /usr/bin/cc -- Fortran compiler ................ : /usr/bin/f95 -- C compiler flags ................ : -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -- C compiler SSE2 flag. ........... : -msse2 -- C compiler SSE 4.1 flag.......... : -msse4.1 -- Fortran compiler flags .......... : -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -- -- Use file memory mapping ..........: ON -- Use thread affinity setting ......: ON -- -- Build shared libs ............... : OFF -- Build static libs ............... : OFF -- Build static executables......... : OFF -- -- Link with pcre .................. : ON -- -- Configuring done -- Generating done -- Build files have been written to: /build/pftools-3.2.6/obj-x86_64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/pftools-3.2.6/debian/pftools/usr/./LICENSE -- Installing: /build/pftools-3.2.6/debian/pftools/usr/./README.md -- Installing: /build/pftools-3.2.6/debian/pftools/usr/./README.pftools.v2.3.md -- Installing: /build/pftools-3.2.6/debian/pftools/usr/./ChangeLog -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfsearchV3 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfscanV3 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfcalibrateV3 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfemit -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfpam -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfdump -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfindex -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/gtop -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/htop -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/ptoh -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/ptof -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfw -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/2ft -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/6ft -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/psa2msa -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfscale -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfsearch -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfscan -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/pfmake -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/compare_2_profiles.pl -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/fasta_to_fastq.pl -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/make_iupac_cmp.pl -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/ps_scan.pl -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/scramble_fasta.pl -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/sort_fasta.pl -- Installing: /build/pftools-3.2.6/debian/pftools/usr/bin/split_profile_file.pl -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/calibration/window20.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/calibration/reversed.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum100.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum30.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum45.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum50.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum62.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum65.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum80.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/dna_50_40.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/gonnet.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/iupac_50_40.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam120.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam160.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam200.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam220.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam250.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam30.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam40.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam400.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam80.cmp -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward.msa -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward_dna.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward_dna_shift5.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/reverse/reverse.msa -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/reverse/reverse.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/reverse/reverse.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/familyProfile/DoubleProfile.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/familyProfile/sequence.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/data/familyProfile/sh2.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/test_scan_search.pl.cmake -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/test_pfsearchV3_iupac.pl.cmake -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/test_V3_output.sh.cmake -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/test_V3.sh.cmake -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/test_V3.out -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/test_V2.sh.cmake -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/standard.random -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/sh3.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/sh3.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/sh3.msf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/sh3.gpr -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/sh2.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/score.lis -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/sample.fastq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/rand_dna.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/rand_dna.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/prosite13.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/pfam_sh3.hmm -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/htop_issue.hmm -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/hiv.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/hiv.fastq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/ecp.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/coils.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/all.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/all.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/VAV_RAT.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/VAV_HUMAN.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/Toolbox.pm -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/SRR9619541.sample.fastq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/RF00177.msa -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/R76849.seq -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/PS00741_PS50010.dat -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/MYSA_HUMAN -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/GTPA_HUMAN.dat -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/CVPBR322.embl -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/examples/16S.prf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/doc/profile.pdf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/doc/profile.txt -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/doc/posterPfsearchV3SIBdays2013_v0.3.pdf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/doc/btt129.pdf -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/2ft.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/6ft.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/gtop.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/htop.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfmake.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfscale.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfscan.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfsearch.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfsearchV2.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfw.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/psa2msa.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/ptof.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man1/ptoh.1 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man5/psa.5 -- Installing: /build/pftools-3.2.6/debian/pftools/usr/share/man/man5/xpsa.5 make[2]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' # Avoid name spacing conflict with htop and consequently also rename gtop mv debian/pftools/usr/bin/gtop debian/pftools/usr/bin/pfgtop mv debian/pftools/usr/bin/htop debian/pftools/usr/bin/pfhtop make[1]: Leaving directory '/build/pftools-3.2.6' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/pftools-3.2.6' dh_installman mv debian/pftools/usr/share/man/man1/gtop.1 debian/pftools/usr/share/man/man1/pfgtop.1 mv debian/pftools/usr/share/man/man1/htop.1 debian/pftools/usr/share/man/man1/pfhtop.1 mv debian/pftools/usr/share/doc/*.pdf debian/pftools/usr/share/doc/pftools/ rm -f debian/pftools/usr/share/doc/*.txt debian/pftools/usr/ChangeLog debian/pftools/usr/README* debian/pftools/usr/LICENSE make[1]: Leaving directory '/build/pftools-3.2.6' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dwz: debian/pftools/usr/bin/pfhtop: DWARF compression not beneficial - old size 42209 new size 42984 dwz: debian/pftools/usr/bin/pfmake: DWARF compression not beneficial - old size 54023 new size 55447 dwz: debian/pftools/usr/bin/pfscale: DWARF compression not beneficial - old size 43458 new size 44187 dwz: debian/pftools/usr/bin/pfscan: DWARF compression not beneficial - old size 66684 new size 70010 dwz: debian/pftools/usr/bin/pfsearch: DWARF compression not beneficial - old size 68858 new size 72375 dwz: debian/pftools/usr/bin/ptof: DWARF compression not beneficial - old size 41913 new size 42449 dwz: debian/pftools/usr/bin/ptoh: DWARF compression not beneficial - old size 35466 new size 36114 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package pftools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package pftools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'pftools-dbgsym' in '../pftools-dbgsym_3.2.6-1_amd64.deb'. dpkg-deb: building package 'pftools' in '../pftools_3.2.6-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pftools_3.2.6-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3142527 and its subdirectories I: Current time: Thu Dec 30 11:40:51 -12 2021 I: pbuilder-time-stamp: 1640907651