I: pbuilder: network access will be disabled during build
I: Current time: Sun Jan 7 03:30:17 -12 2024
I: pbuilder-time-stamp: 1704641417
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [bali-phy_3.6.0+dfsg-1.dsc]
I: copying [./bali-phy_3.6.0+dfsg.orig.tar.xz]
I: copying [./bali-phy_3.6.0+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.BRKOsPI8/trustedkeys.kbx': General error
gpgv: Signature made Sun Feb 7 07:51:21 2021
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bali-phy_3.6.0+dfsg-1.dsc
dpkg-source: info: extracting bali-phy in bali-phy-3.6.0+dfsg
dpkg-source: info: unpacking bali-phy_3.6.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking bali-phy_3.6.0+dfsg-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/14016/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3 '
DISTRIBUTION='bullseye'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='e5390718249147d5943340910fd226e1'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='14016'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.E5ca0os4/pbuilderrc_NGP6 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.E5ca0os4/b1 --logfile b1/build.log bali-phy_3.6.0+dfsg-1.dsc'
SUDO_GID='112'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt32b 6.1.0-17-armmp-lpae #1 SMP Debian 6.1.69-1 (2023-12-30) armv7l GNU/Linux
I: ls -l /bin
total 3580
-rwxr-xr-x 1 root root 816764 Mar 27 2022 bash
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 26668 Sep 22 2020 cat
-rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 43112 Sep 22 2020 chown
-rwxr-xr-x 1 root root 92616 Sep 22 2020 cp
-rwxr-xr-x 1 root root 75524 Dec 10 2020 dash
-rwxr-xr-x 1 root root 75880 Sep 22 2020 date
-rwxr-xr-x 1 root root 55436 Sep 22 2020 dd
-rwxr-xr-x 1 root root 59912 Sep 22 2020 df
-rwxr-xr-x 1 root root 96764 Sep 22 2020 dir
-rwxr-xr-x 1 root root 55012 Jan 20 2022 dmesg
lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname
-rwxr-xr-x 1 root root 22508 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Jan 25 2023 egrep
-rwxr-xr-x 1 root root 22496 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep
-rwxr-xr-x 1 root root 47492 Jan 20 2022 findmnt
-rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount
-rwxr-xr-x 1 root root 124508 Jan 25 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 64212 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 13784 Nov 7 2019 hostname
-rwxr-xr-x 1 root root 43180 Sep 22 2020 ln
-rwxr-xr-x 1 root root 35068 Feb 7 2020 login
-rwxr-xr-x 1 root root 96764 Sep 22 2020 ls
-rwxr-xr-x 1 root root 99940 Jan 20 2022 lsblk
-rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 34408 Jan 20 2022 more
-rwsr-xr-x 1 root root 34400 Jan 20 2022 mount
-rwxr-xr-x 1 root root 9824 Jan 20 2022 mountpoint
-rwxr-xr-x 1 root root 88524 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash
-rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 43104 Sep 22 2020 rm
-rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Jan 7 09:26 sh -> dash
-rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 55360 Sep 22 2020 stty
-rwsr-xr-x 1 root root 46704 Jan 20 2022 su
-rwxr-xr-x 1 root root 22532 Sep 22 2020 sync
-rwxr-xr-x 1 root root 340872 Feb 17 2021 tar
-rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 67696 Sep 22 2020 touch
-rwxr-xr-x 1 root root 22496 Sep 22 2020 true
-rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Jan 20 2022 umount
-rwxr-xr-x 1 root root 22520 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 38512 Jan 20 2022 wdctl
lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/14016/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), meson (>= 0.53), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 17486 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on meson (>= 0.53); however:
Package meson is not installed.
pbuilder-satisfydepends-dummy depends on libcairo2-dev; however:
Package libcairo2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libeigen3-dev; however:
Package libeigen3-dev is not installed.
pbuilder-satisfydepends-dummy depends on nlohmann-json3-dev; however:
Package nlohmann-json3-dev is not installed.
pbuilder-satisfydepends-dummy depends on pandoc; however:
Package pandoc is not installed.
pbuilder-satisfydepends-dummy depends on libboost-dev; however:
Package libboost-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however:
Package libboost-program-options-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-random-dev; however:
Package libboost-random-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-system-dev; however:
Package libboost-system-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however:
Package libboost-filesystem-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however:
Package libboost-chrono-dev is not installed.
pbuilder-satisfydepends-dummy depends on librange-v3-dev; however:
Package librange-v3-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-random-dev{a} libboost-random1.74-dev{a} libboost-random1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost1.74-dev{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcmark-gfm-extensions0{a} libcmark-gfm0{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype-dev{a} libfreetype6{a} libfreetype6-dev{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libice-dev{a} libice6{a} libicu67{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmount-dev{a} libmpdec3{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix2{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpng-dev{a} libpng16-16{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librange-v3-dev{a} libreadline8{a} libselinux1-dev{a} libsepol1-dev{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxml2{a} libxrender-dev{a} libxrender1{a} m4{a} man-db{a} media-types{a} meson{a} ninja-build{a} nlohmann-json3-dev{a} pandoc{a} pandoc-data{a} pkg-config{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} uuid-dev{a} x11-common{a} x11proto-dev{a} x11proto-xext-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpng-tools librange-v3-doc lynx shared-mime-info wget xdg-user-dirs
0 packages upgraded, 144 newly installed, 0 to remove and 0 not upgraded.
Need to get 76.2 MB of archives. After unpacking 473 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8+deb11u1 [139 kB]
Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB]
Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB]
Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB]
Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB]
Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2+deb11u5 [78.4 kB]
Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB]
Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB]
Get: 11 http://deb.debian.org/debian bullseye/main armhf tzdata all 2021a-1+deb11u10 [286 kB]
Get: 12 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB]
Get: 13 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB]
Get: 14 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB]
Get: 15 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB]
Get: 16 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB]
Get: 17 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get: 18 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get: 19 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get: 20 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3+deb11u1 [273 kB]
Get: 21 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3+deb11u1 [120 kB]
Get: 22 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3+deb11u1 [68.2 kB]
Get: 23 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB]
Get: 24 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB]
Get: 25 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB]
Get: 26 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB]
Get: 27 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB]
Get: 28 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 29 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB]
Get: 30 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB]
Get: 31 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get: 32 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB]
Get: 33 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 34 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 35 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get: 36 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 37 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 38 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB]
Get: 39 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB]
Get: 40 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB]
Get: 41 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7+deb11u4 [602 kB]
Get: 42 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB]
Get: 43 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 44 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 45 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB]
Get: 46 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get: 47 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get: 48 http://deb.debian.org/debian bullseye/main armhf uuid-dev armhf 2.36.1-8+deb11u1 [98.1 kB]
Get: 49 http://deb.debian.org/debian bullseye/main armhf libblkid-dev armhf 2.36.1-8+deb11u1 [217 kB]
Get: 50 http://deb.debian.org/debian bullseye/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get: 51 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74.0 armhf 1.74.0-9 [248 kB]
Get: 52 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74-dev armhf 1.74.0-9 [255 kB]
Get: 53 http://deb.debian.org/debian bullseye/main armhf libboost-chrono-dev armhf 1.74.0.3 [4960 B]
Get: 54 http://deb.debian.org/debian bullseye/main armhf libboost-dev armhf 1.74.0.3 [4548 B]
Get: 55 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74.0 armhf 1.74.0-9 [275 kB]
Get: 56 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB]
Get: 57 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB]
Get: 58 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74-dev armhf 1.74.0-9 [289 kB]
Get: 59 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem-dev armhf 1.74.0.3 [4368 B]
Get: 60 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74.0 armhf 1.74.0-9 [339 kB]
Get: 61 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74-dev armhf 1.74.0-9 [384 kB]
Get: 62 http://deb.debian.org/debian bullseye/main armhf libboost-program-options-dev armhf 1.74.0.3 [4340 B]
Get: 63 http://deb.debian.org/debian bullseye/main armhf libboost-random1.74.0 armhf 1.74.0-9 [246 kB]
Get: 64 http://deb.debian.org/debian bullseye/main armhf libboost-random1.74-dev armhf 1.74.0-9 [250 kB]
Get: 65 http://deb.debian.org/debian bullseye/main armhf libboost-random-dev armhf 1.74.0.3 [4336 B]
Get: 66 http://deb.debian.org/debian bullseye/main armhf libboost-system-dev armhf 1.74.0.3 [4468 B]
Get: 67 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB]
Get: 68 http://deb.debian.org/debian bullseye/main armhf libbrotli-dev armhf 1.0.9-2+b2 [270 kB]
Get: 69 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB]
Get: 70 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1+deb11u1 [103 kB]
Get: 71 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB]
Get: 72 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1+deb11u1 [357 kB]
Get: 73 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB]
Get: 74 http://deb.debian.org/debian bullseye/main armhf libpixman-1-0 armhf 0.40.0-1.1~deb11u1 [466 kB]
Get: 75 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB]
Get: 76 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get: 77 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get: 78 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.2-1+deb11u1 [311 kB]
Get: 79 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.2-1+deb11u1 [711 kB]
Get: 80 http://deb.debian.org/debian bullseye/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get: 81 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get: 82 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get: 83 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get: 84 http://deb.debian.org/debian bullseye/main armhf libcairo2 armhf 1.16.0-5 [615 kB]
Get: 85 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB]
Get: 86 http://deb.debian.org/debian bullseye/main armhf libcairo-gobject2 armhf 1.16.0-5 [125 kB]
Get: 87 http://deb.debian.org/debian bullseye/main armhf liblzo2-2 armhf 2.10-2 [50.7 kB]
Get: 88 http://deb.debian.org/debian bullseye/main armhf libcairo-script-interpreter2 armhf 1.16.0-5 [153 kB]
Get: 89 http://deb.debian.org/debian bullseye/main armhf libexpat1-dev armhf 2.2.10-2+deb11u5 [126 kB]
Get: 90 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2+deb11u2 [185 kB]
Get: 91 http://deb.debian.org/debian bullseye/main armhf libpng-dev armhf 1.6.37-3 [282 kB]
Get: 92 http://deb.debian.org/debian bullseye/main armhf libfreetype-dev armhf 2.10.4+dfsg-1+deb11u1 [516 kB]
Get: 93 http://deb.debian.org/debian bullseye/main armhf libfreetype6-dev armhf 2.10.4+dfsg-1+deb11u1 [82.6 kB]
Get: 94 http://deb.debian.org/debian bullseye/main armhf pkg-config armhf 0.29.2-1 [62.4 kB]
Get: 95 http://deb.debian.org/debian bullseye/main armhf libfontconfig-dev armhf 2.13.1-4.2 [353 kB]
Get: 96 http://deb.debian.org/debian bullseye/main armhf libfontconfig1-dev armhf 2.13.1-4.2 [238 kB]
Get: 97 http://deb.debian.org/debian bullseye/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 98 http://deb.debian.org/debian bullseye/main armhf x11proto-dev all 2020.1-1 [594 kB]
Get: 99 http://deb.debian.org/debian bullseye/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB]
Get: 100 http://deb.debian.org/debian bullseye/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB]
Get: 101 http://deb.debian.org/debian bullseye/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 102 http://deb.debian.org/debian bullseye/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get: 103 http://deb.debian.org/debian bullseye/main armhf libxcb1-dev armhf 1.14-3 [175 kB]
Get: 104 http://deb.debian.org/debian bullseye/main armhf libx11-dev armhf 2:1.7.2-1+deb11u1 [787 kB]
Get: 105 http://deb.debian.org/debian bullseye/main armhf libxrender-dev armhf 1:0.9.10-1 [37.8 kB]
Get: 106 http://deb.debian.org/debian bullseye/main armhf x11proto-xext-dev all 2020.1-1 [3404 B]
Get: 107 http://deb.debian.org/debian bullseye/main armhf libxext-dev armhf 2:1.3.3-1.1 [103 kB]
Get: 108 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB]
Get: 109 http://deb.debian.org/debian bullseye/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB]
Get: 110 http://deb.debian.org/debian bullseye/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB]
Get: 111 http://deb.debian.org/debian bullseye/main armhf libice-dev armhf 2:1.0.10-1 [61.9 kB]
Get: 112 http://deb.debian.org/debian bullseye/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB]
Get: 113 http://deb.debian.org/debian bullseye/main armhf libpixman-1-dev armhf 0.40.0-1.1~deb11u1 [488 kB]
Get: 114 http://deb.debian.org/debian bullseye/main armhf libxcb-render0-dev armhf 1.14-3 [114 kB]
Get: 115 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0-dev armhf 1.14-3 [103 kB]
Get: 116 http://deb.debian.org/debian bullseye/main armhf libffi-dev armhf 3.3-6 [52.8 kB]
Get: 117 http://deb.debian.org/debian bullseye/main armhf libglib2.0-data all 2.66.8-1 [1164 kB]
Get: 118 http://deb.debian.org/debian bullseye/main armhf libglib2.0-bin armhf 2.66.8-1 [135 kB]
Get: 119 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB]
Get: 120 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB]
Get: 121 http://deb.debian.org/debian bullseye/main armhf libglib2.0-dev-bin armhf 2.66.8-1 [176 kB]
Get: 122 http://deb.debian.org/debian bullseye/main armhf libsepol1-dev armhf 3.1-1 [317 kB]
Get: 123 http://deb.debian.org/debian bullseye/main armhf libpcre2-16-0 armhf 10.36-2+deb11u1 [198 kB]
Get: 124 http://deb.debian.org/debian bullseye/main armhf libpcre2-32-0 armhf 10.36-2+deb11u1 [189 kB]
Get: 125 http://deb.debian.org/debian bullseye/main armhf libpcre2-posix2 armhf 10.36-2+deb11u1 [48.6 kB]
Get: 126 http://deb.debian.org/debian bullseye/main armhf libpcre2-dev armhf 10.36-2+deb11u1 [640 kB]
Get: 127 http://deb.debian.org/debian bullseye/main armhf libselinux1-dev armhf 3.1-3 [163 kB]
Get: 128 http://deb.debian.org/debian bullseye/main armhf libmount-dev armhf 2.36.1-8+deb11u1 [78.0 kB]
Get: 129 http://deb.debian.org/debian bullseye/main armhf libpcre16-3 armhf 2:8.39-13 [239 kB]
Get: 130 http://deb.debian.org/debian bullseye/main armhf libpcre32-3 armhf 2:8.39-13 [231 kB]
Get: 131 http://deb.debian.org/debian bullseye/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get: 132 http://deb.debian.org/debian bullseye/main armhf libpcre3-dev armhf 2:8.39-13 [587 kB]
Get: 133 http://deb.debian.org/debian bullseye/main armhf libglib2.0-dev armhf 2.66.8-1 [1471 kB]
Get: 134 http://deb.debian.org/debian bullseye/main armhf libcairo2-dev armhf 1.16.0-5 [659 kB]
Get: 135 http://deb.debian.org/debian bullseye/main armhf libcmark-gfm0 armhf 0.29.0.gfm.0-6 [103 kB]
Get: 136 http://deb.debian.org/debian bullseye/main armhf libcmark-gfm-extensions0 armhf 0.29.0.gfm.0-6 [43.7 kB]
Get: 137 http://deb.debian.org/debian bullseye/main armhf libeigen3-dev all 3.3.9-2 [858 kB]
Get: 138 http://deb.debian.org/debian bullseye/main armhf librange-v3-dev all 0.11.0-1 [221 kB]
Get: 139 http://deb.debian.org/debian bullseye/main armhf ninja-build armhf 1.10.1-1 [99.4 kB]
Get: 140 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB]
Get: 141 http://deb.debian.org/debian bullseye/main armhf meson all 0.56.2-1 [437 kB]
Get: 142 http://deb.debian.org/debian bullseye/main armhf nlohmann-json3-dev all 3.9.1-1 [684 kB]
Get: 143 http://deb.debian.org/debian bullseye/main armhf pandoc-data all 2.9.2.1-1+deb11u1 [377 kB]
Get: 144 http://deb.debian.org/debian bullseye/main armhf pandoc armhf 2.9.2.1-1+deb11u1 [18.8 MB]
Fetched 76.2 MB in 13s (5860 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libuchardet0:armhf (0.0.7-1) ...
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Unpacking groff-base (1.22.4-6) ...
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Unpacking man-db (2.9.4-2) ...
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Unpacking libexpat1:armhf (2.2.10-2+deb11u5) ...
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Unpacking python3.9-minimal (3.9.2-1) ...
Setting up libpython3.9-minimal:armhf (3.9.2-1) ...
Setting up libexpat1:armhf (2.2.10-2+deb11u5) ...
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Selecting previously unselected package python3-minimal.
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Unpacking tzdata (2021a-1+deb11u10) ...
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Unpacking libmpdec3:armhf (2.5.1-1) ...
Selecting previously unselected package readline-common.
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Unpacking readline-common (8.1-1) ...
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Unpacking libreadline8:armhf (8.1-1) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
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Unpacking libpython3.9-stdlib:armhf (3.9.2-1) ...
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Unpacking python3.9 (3.9.2-1) ...
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Setting up python3-minimal (3.9.2-3) ...
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Preparing to unpack .../000-python3_3.9.2-3_armhf.deb ...
Unpacking python3 (3.9.2-3) ...
Selecting previously unselected package sensible-utils.
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Unpacking sensible-utils (0.0.14) ...
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Unpacking libmagic-mgc (1:5.39-3+deb11u1) ...
Selecting previously unselected package libmagic1:armhf.
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Unpacking libmagic1:armhf (1:5.39-3+deb11u1) ...
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Unpacking m4 (1.4.18-5) ...
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Unpacking autoconf (2.69-14) ...
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Selecting previously unselected package automake.
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Unpacking automake (1:1.16.3-2) ...
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Unpacking gettext (0.21-4) ...
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Unpacking fontconfig-config (2.13.1-4.2) ...
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Unpacking libboost-chrono1.74-dev:armhf (1.74.0-9) ...
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Unpacking libboost-chrono-dev:armhf (1.74.0.3) ...
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Unpacking libboost-dev:armhf (1.74.0.3) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/bali-phy-3.6.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bali-phy_3.6.0+dfsg-1_source.changes
dpkg-buildpackage: info: source package bali-phy
dpkg-buildpackage: info: source version 3.6.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Benjamin Redelings <benjamin.redelings@gmail.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=meson
dh_auto_clean -O--buildsystem=meson
dh_autoreconf_clean -O--buildsystem=meson
dh_clean -O--buildsystem=meson
debian/rules binary
dh binary --buildsystem=meson
dh_update_autotools_config -O--buildsystem=meson
dh_autoreconf -O--buildsystem=meson
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/bali-phy-3.6.0+dfsg'
dh_auto_configure -- -Dextra-tools=false --buildtype=release -Db_ndebug=true
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf -Dextra-tools=false --buildtype=release -Db_ndebug=true
The Meson build system
Version: 0.56.2
Source dir: /build/reproducible-path/bali-phy-3.6.0+dfsg
Build dir: /build/reproducible-path/bali-phy-3.6.0+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: bali-phy
Project version: 3.6.0
Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
C compiler for the host machine: cc (gcc 10.2.1 "cc (Debian 10.2.1-6) 10.2.1 20210110")
C linker for the host machine: cc ld.bfd 2.35.2
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
C++ compiler for the host machine: c++ (gcc 10.2.1 "c++ (Debian 10.2.1-6) 10.2.1 20210110")
C++ linker for the host machine: c++ ld.bfd 2.35.2
Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2'
Host machine cpu family: arm
Host machine cpu: armv7l
Has header "sys/resource.h" : YES
Has header "fenv.h" : YES
Checking for function "log2" : YES
Checking for function "feenableexcept" : YES
Configuring config.h using configuration
Compiler for C++ supports arguments -Wno-sign-compare: YES
Compiler for C++ supports arguments -Wno-maybe-uninitialized: YES
Compiler for C++ supports arguments -Woverloaded-virtual: YES
Compiler for C++ supports arguments -Wstrict-aliasing: YES
Compiler for C++ supports arguments -Wno-unknown-pragmas: YES
Compiler for C++ supports arguments -fdiagnostics-show-template-tree: YES
Compiler for C++ supports arguments -funroll-loops: YES
Compiler for C++ supports arguments -fno-math-errno: YES
Compiler for C++ supports arguments -fno-signed-zeros: YES
Run-time dependency threads found: YES
Found pkg-config: /usr/bin/pkg-config (0.29.2)
Run-time dependency cairo found: YES 1.16.0
Run-time dependency Boost (found: chrono, filesystem, program_options, random, system) found: YES 1.74.0 (/usr)
Run-time dependency eigen3 found: YES 3.3.9
Has header "nlohmann/json.hpp" : YES
Library dl found: YES
Has header "range/v3/view/take.hpp" : YES
Library m found: YES
Program pandoc found: YES (/usr/bin/pandoc)
Program /build/reproducible-path/bali-phy-3.6.0+dfsg/tests/run-tests.py found: YES (/build/reproducible-path/bali-phy-3.6.0+dfsg/tests/run-tests.py)
Build targets in project: 87
bali-phy 3.6.0
Architecture
host: linux
Libraries
BOOST: system
Eigen: system
nlohmann::json: system
range v3: system
cairo: system
Directories
prefix: /usr
Configuration
optimization: 3
b_ndebug: true
debug: False
Found ninja-1.10.1 at /usr/bin/ninja
make[1]: Leaving directory '/build/reproducible-path/bali-phy-3.6.0+dfsg'
dh_auto_build -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j3 -v
[1/297] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /build/reproducible-path/bali-phy-3.6.0+dfsg/src @git_message@ '(.*)' /build/reproducible-path/bali-phy-3.6.0+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)'
[2/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_pred.cc.o -MF src/util/libutil.a.p/string_pred.cc.o.d -o src/util/libutil.a.p/string_pred.cc.o -c ../src/util/string/pred.cc
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[4/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_strip.cc.o -MF src/util/libutil.a.p/string_strip.cc.o.d -o src/util/libutil.a.p/string_strip.cc.o -c ../src/util/string/strip.cc
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[6/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_newick-tokenizer.cc.o -MF src/libcommon.a.p/tree_newick-tokenizer.cc.o.d -o src/libcommon.a.p/tree_newick-tokenizer.cc.o -c ../src/tree/newick-tokenizer.cc
[7/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/io.cc.o -MF src/util/libutil.a.p/io.cc.o.d -o src/util/libutil.a.p/io.cc.o -c ../src/util/io.cc
[8/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/range.cc.o -MF src/util/libutil.a.p/range.cc.o.d -o src/util/libutil.a.p/range.cc.o -c ../src/util/range.cc
[9/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/demangle.cc.o -MF src/util/libutil.a.p/demangle.cc.o.d -o src/util/libutil.a.p/demangle.cc.o -c ../src/util/demangle.cc
[10/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/mapping.cc.o -MF src/util/libutil.a.p/mapping.cc.o.d -o src/util/libutil.a.p/mapping.cc.o -c ../src/util/mapping.cc
[11/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/graph.cc.o -MF src/util/libutil.a.p/graph.cc.o.d -o src/util/libutil.a.p/graph.cc.o -c ../src/util/graph.cc
[12/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_split.cc.o -MF src/util/libutil.a.p/string_split.cc.o.d -o src/util/libutil.a.p/string_split.cc.o -c ../src/util/string/split.cc
[13/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/rng.cc.o -MF src/util/libutil.a.p/rng.cc.o.d -o src/util/libutil.a.p/rng.cc.o -c ../src/util/rng.cc
../src/util/rng.cc: In function ‘long unsigned int get_random_seed()’:
../src/util/rng.cc:42:8: warning: left shift count >= width of type [-Wshift-count-overflow]
42 | s <<= bits_per_read;
| ~~^~~~~~~~~~~~~~~~~
[14/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/permute.cc.o -MF src/util/libutil.a.p/permute.cc.o.d -o src/util/libutil.a.p/permute.cc.o -c ../src/util/permute.cc
[15/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/cmdline.cc.o -MF src/util/libutil.a.p/cmdline.cc.o.d -o src/util/libutil.a.p/cmdline.cc.o -c ../src/util/cmdline.cc
[16/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-paths.cc.o -MF src/util/libutil.a.p/file-paths.cc.o.d -o src/util/libutil.a.p/file-paths.cc.o -c ../src/util/file-paths.cc
[17/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/myexception.cc.o -MF src/util/libutil.a.p/myexception.cc.o.d -o src/util/libutil.a.p/myexception.cc.o -c ../src/util/myexception.cc
[18/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/text.cc.o -MF src/util/libutil.a.p/text.cc.o.d -o src/util/libutil.a.p/text.cc.o -c ../src/util/text.cc
[19/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/time.cc.o -MF src/util/libutil.a.p/time.cc.o.d -o src/util/libutil.a.p/time.cc.o -c ../src/util/time.cc
[20/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/ptree.cc.o -MF src/util/libutil.a.p/ptree.cc.o.d -o src/util/libutil.a.p/ptree.cc.o -c ../src/util/ptree.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/util/include/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘int ptree::make_index(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void ptree::erase(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/util/include/util/ptree.H:5,
from ../src/util/ptree.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’:
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[21/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_sequencetree.cc.o -MF src/libcommon.a.p/tree_sequencetree.cc.o.d -o src/libcommon.a.p/tree_sequencetree.cc.o -c ../src/tree/sequencetree.cc
[22/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-readers.cc.o -MF src/util/libutil.a.p/file-readers.cc.o.d -o src/util/libutil.a.p/file-readers.cc.o -c ../src/util/file-readers.cc
[23/297] rm -f src/util/libutil.a && gcc-ar csrD src/util/libutil.a src/util/libutil.a.p/string_pred.cc.o src/util/libutil.a.p/string_sanitize.cc.o src/util/libutil.a.p/string_strip.cc.o src/util/libutil.a.p/string_split.cc.o src/util/libutil.a.p/log-level.cc.o src/util/libutil.a.p/io.cc.o src/util/libutil.a.p/graph.cc.o src/util/libutil.a.p/range.cc.o src/util/libutil.a.p/demangle.cc.o src/util/libutil.a.p/mapping.cc.o src/util/libutil.a.p/cmdline.cc.o src/util/libutil.a.p/rng.cc.o src/util/libutil.a.p/permute.cc.o src/util/libutil.a.p/file-paths.cc.o src/util/libutil.a.p/ptree.cc.o src/util/libutil.a.p/text.cc.o src/util/libutil.a.p/myexception.cc.o src/util/libutil.a.p/time.cc.o src/util/libutil.a.p/file-readers.cc.o
[24/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_load.cc.o -MF src/libcommon.a.p/alignment_load.cc.o.d -o src/libcommon.a.p/alignment_load.cc.o -c ../src/alignment/load.cc
[25/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-util.cc.o -MF src/libcommon.a.p/alignment_alignment-util.cc.o.d -o src/libcommon.a.p/alignment_alignment-util.cc.o -c ../src/alignment/alignment-util.cc
[26/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree.cc.o -MF src/libcommon.a.p/tree_tree.cc.o.d -o src/libcommon.a.p/tree_tree.cc.o -c ../src/tree/tree.cc
[27/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_randomtree.cc.o -MF src/libcommon.a.p/tree_randomtree.cc.o.d -o src/libcommon.a.p/tree_randomtree.cc.o -c ../src/tree/randomtree.cc
[28/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_n_indels.cc.o -MF src/libcommon.a.p/tree-align_n_indels.cc.o.d -o src/libcommon.a.p/tree-align_n_indels.cc.o -c ../src/tree-align/n_indels.cc
[29/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree-util.cc.o -MF src/libcommon.a.p/tree_tree-util.cc.o.d -o src/libcommon.a.p/tree_tree-util.cc.o -c ../src/tree/tree-util.cc
[30/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence-format.cc.o -MF src/libcommon.a.p/sequence_sequence-format.cc.o.d -o src/libcommon.a.p/sequence_sequence-format.cc.o -c ../src/sequence/sequence-format.cc
[31/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence.cc.o -MF src/libcommon.a.p/sequence_sequence.cc.o.d -o src/libcommon.a.p/sequence_sequence.cc.o -c ../src/sequence/sequence.cc
[32/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_alphabet.cc.o -MF src/libcommon.a.p/sequence_alphabet.cc.o.d -o src/libcommon.a.p/sequence_alphabet.cc.o -c ../src/sequence/alphabet.cc
[33/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_read-trees.cc.o -MF src/libcommon.a.p/tools_read-trees.cc.o.d -o src/libcommon.a.p/tools_read-trees.cc.o -c ../src/tools/read-trees.cc
[34/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-random.cc.o -MF src/libcommon.a.p/alignment_alignment-random.cc.o.d -o src/libcommon.a.p/alignment_alignment-random.cc.o -c ../src/alignment/alignment-random.cc
[35/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_index-matrix.cc.o -MF src/libcommon.a.p/alignment_index-matrix.cc.o.d -o src/libcommon.a.p/alignment_index-matrix.cc.o -c ../src/alignment/index-matrix.cc
[36/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/models_path.cc.o -MF src/libcommon.a.p/models_path.cc.o.d -o src/libcommon.a.p/models_path.cc.o -c ../src/models/path.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/path.H:5,
from ../src/models/path.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void simplify(ptree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[37/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_statistics.cc.o -MF src/libcommon.a.p/tools_statistics.cc.o.d -o src/libcommon.a.p/tools_statistics.cc.o -c ../src/tools/statistics.cc
../src/tools/statistics.cc: In function ‘std::pair<double, double> statistics::central_confidence_interval(const std::valarray<double>&, double)’:
../src/tools/statistics.cc:132:90: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
132 | pair<double,double> central_confidence_interval(const valarray<double>& values,double P)
| ^
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statistics.cc:22:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector<double>, double)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::central_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::HPD_confidence_interval(std::vector<double>, double)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘std::pair<double, double> statistics::mode(std::vector<double>)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray<double>&, const std::valarray<double>&)’:
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
[38/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_link.cc.o -MF src/libcommon.a.p/tree-align_link.cc.o.d -o src/libcommon.a.p/tree-align_link.cc.o -c ../src/tree-align/link.cc
[39/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment.cc.o -MF src/libcommon.a.p/alignment_alignment.cc.o.d -o src/libcommon.a.p/alignment_alignment.cc.o -c ../src/alignment/alignment.cc
[40/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_mctree.cc.o -MF src/libcommon.a.p/tools_mctree.cc.o.d -o src/libcommon.a.p/tools_mctree.cc.o -c ../src/tools/mctree.cc
[41/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_tree-dist.cc.o -MF src/libcommon.a.p/tools_tree-dist.cc.o.d -o src/libcommon.a.p/tools_tree-dist.cc.o -c ../src/tools/tree-dist.cc
[42/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_optimize.cc.o -MF src/libcommon.a.p/tools_optimize.cc.o.d -o src/libcommon.a.p/tools_optimize.cc.o -c ../src/tools/optimize.cc
[43/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_parsimony.cc.o -MF src/libcommon.a.p/tools_parsimony.cc.o.d -o src/libcommon.a.p/tools_parsimony.cc.o -c ../src/tools/parsimony.cc
[44/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_partition.cc.o -MF src/libcommon.a.p/tools_partition.cc.o.d -o src/libcommon.a.p/tools_partition.cc.o -c ../src/tools/partition.cc
[45/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_findroot.cc.o -MF src/libcommon.a.p/tools_findroot.cc.o.d -o src/libcommon.a.p/tools_findroot.cc.o -c ../src/tools/findroot.cc
[46/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_inverse.cc.o -MF src/libcommon.a.p/tools_inverse.cc.o.d -o src/libcommon.a.p/tools_inverse.cc.o -c ../src/tools/inverse.cc
[47/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-report.cc.o -MF src/libcommon.a.p/tools_distance-report.cc.o.d -o src/libcommon.a.p/tools_distance-report.cc.o -c ../src/tools/distance-report.cc
../src/tools/distance-report.cc: In function ‘void report_distances(const std::valarray<double>&, const string&, boost::program_options::variables_map&)’:
../src/tools/distance-report.cc:35:75: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
35 | pair<double,double> interval = central_confidence_interval(distances,P);
| ^
[48/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_stats-table.cc.o -MF src/libcommon.a.p/tools_stats-table.cc.o.d -o src/libcommon.a.p/tools_stats-table.cc.o -c ../src/tools/stats-table.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > parameter_values(const json&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:7,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:49,
from ../src/util/include/util/json.hh:3,
from ../src/tools/stats-table.H:29,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/nlohmann/detail/conversions/from_json.hpp:7,
from /usr/include/nlohmann/adl_serializer.hpp:5,
from /usr/include/nlohmann/json.hpp:49,
from ../src/util/include/util/json.hh:3,
from ../src/tools/stats-table.H:29,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/stats-table.H:23,
from ../src/tools/stats-table.cc:22:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[49/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/closure.cc.o -MF src/computation/libcomputation.a.p/closure.cc.o.d -o src/computation/libcomputation.a.p/closure.cc.o -c ../src/computation/closure.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/closure.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[50/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-methods.cc.o -MF src/libcommon.a.p/tools_distance-methods.cc.o.d -o src/libcommon.a.p/tools_distance-methods.cc.o -c ../src/tools/distance-methods.cc
[51/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_joint-A-T.cc.o -MF src/libcommon.a.p/tools_joint-A-T.cc.o.d -o src/libcommon.a.p/tools_joint-A-T.cc.o -c ../src/tools/joint-A-T.cc
[52/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/object.cc.o -MF src/computation/libcomputation.a.p/object.cc.o.d -o src/computation/libcomputation.a.p/object.cc.o -c ../src/computation/object.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/object.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/object.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::string Box<T>::print() const [with T = bali_phy::matrix<double>]’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[53/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_consensus-tree.cc.o -MF src/libcommon.a.p/tools_consensus-tree.cc.o.d -o src/libcommon.a.p/tools_consensus-tree.cc.o -c ../src/tools/consensus-tree.cc
[54/297] rm -f src/libcommon.a && gcc-ar csrD src/libcommon.a src/libcommon.a.p/tree_newick-tokenizer.cc.o src/libcommon.a.p/tree_sequencetree.cc.o src/libcommon.a.p/tree_tree.cc.o src/libcommon.a.p/tree_tree-util.cc.o src/libcommon.a.p/tree_randomtree.cc.o src/libcommon.a.p/tree-align_n_indels.cc.o src/libcommon.a.p/sequence_alphabet.cc.o src/libcommon.a.p/sequence_sequence.cc.o src/libcommon.a.p/sequence_sequence-format.cc.o src/libcommon.a.p/tools_read-trees.cc.o src/libcommon.a.p/alignment_alignment-util.cc.o src/libcommon.a.p/alignment_load.cc.o src/libcommon.a.p/alignment_alignment.cc.o src/libcommon.a.p/alignment_alignment-random.cc.o src/libcommon.a.p/alignment_index-matrix.cc.o src/libcommon.a.p/tree-align_link.cc.o src/libcommon.a.p/models_path.cc.o src/libcommon.a.p/tools_statistics.cc.o src/libcommon.a.p/tools_partition.cc.o src/libcommon.a.p/tools_tree-dist.cc.o src/libcommon.a.p/tools_parsimony.cc.o src/libcommon.a.p/tools_mctree.cc.o src/libcommon.a.p/tools_stats-table.cc.o src/libcommon.a.p/tools_findroot.cc.o src/libcommon.a.p/tools_optimize.cc.o src/libcommon.a.p/tools_distance-report.cc.o src/libcommon.a.p/tools_inverse.cc.o src/libcommon.a.p/tools_joint-A-T.cc.o src/libcommon.a.p/tools_distance-methods.cc.o src/libcommon.a.p/tools_consensus-tree.cc.o
[55/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/preprocess.cc.o -MF src/computation/libcomputation.a.p/preprocess.cc.o.d -o src/computation/libcomputation.a.p/preprocess.cc.o -c ../src/computation/preprocess.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/preprocess.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[56/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_rename.cc.o -MF src/computation/libcomputation.a.p/parser_rename.cc.o.d -o src/computation/libcomputation.a.p/parser_rename.cc.o -c ../src/computation/parser/rename.cc
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/stl_vector.h:625:7: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
625 | vector(initializer_list<value_type> __l,
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/deque:69,
from ../src/computation/parser/rename.cc:5:
/usr/include/c++/10/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/deque.tcc:768:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
768 | deque<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/deque.tcc:768:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref rename_infix_top(const Module&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘bound_var_info renamer_state::rename_pattern(expression_ref&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
../src/computation/parser/rename.cc: In member function ‘bound_var_info renamer_state::rename_decls(expression_ref&, const bound_var_info&)’:
../src/computation/parser/rename.cc:715:69: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
715 | decl = expression_ref(AST_node("Decl:sigtype"),{id,type});
| ^
../src/computation/parser/rename.cc:732:78: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
732 | cdecl = expression_ref(AST_node("Decl:sigtype"),{id,type});
| ^
../src/computation/parser/rename.cc:735:80: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
735 | decl = expression_ref(AST_node("Class"),{class_header, class_decls});
| ^
../src/computation/parser/rename.cc:751:89: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
751 | decl = expression_ref(AST_node("Instance"),{instance_header, instance_decls});
| ^
../src/computation/parser/rename.cc:770:80: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
770 | decl = expression_ref(AST_node("Class"),{class_header, class_decls});
| ^
../src/computation/parser/rename.cc:781:89: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
781 | decl = expression_ref(AST_node("Instance"),{instance_header, instance_decls});
| ^
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘bound_var_info renamer_state::rename_rec_stmt(expression_ref&, const bound_var_info&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/parser/rename.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[57/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/program.cc.o -MF src/computation/libcomputation.a.p/program.cc.o.d -o src/computation/libcomputation.a.p/program.cc.o -c ../src/computation/program.cc
../src/computation/program.cc: In member function ‘void Program::check_dependencies()’:
../src/computation/program.cc:155:10: warning: unused variable ‘index’ [-Wunused-variable]
155 | int index = find_module(name);
| ^~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/program.H:5,
from ../src/computation/program.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator<Module>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Module>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void Program::add(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/program.H:5,
from ../src/computation/program.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Module*, std::vector<Module> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[58/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar-case.cc.o -MF src/computation/libcomputation.a.p/parser_desugar-case.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar-case.cc.o -c ../src/computation/parser/desugar-case.cc
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/stl_vector.h:625:7: note: parameter passing for argument of type ‘std::initializer_list<std::pair<var, expression_ref> >’ changed in GCC 7.1
625 | vector(initializer_list<value_type> __l,
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In lambda function:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
../src/computation/parser/desugar-case.cc: In member function ‘void desugar_state::clean_up_pattern(const expression_ref&, equation_info_t&)’:
../src/computation/parser/desugar-case.cc:325:26: note: parameter passing for argument of type ‘std::initializer_list<std::pair<var, expression_ref> >’ changed in GCC 7.1
325 | rhs.add_binding({{y, x}});
| ^
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../src/computation/parser/desugar-case.cc:345:26: note: parameter passing for argument of type ‘std::initializer_list<std::pair<var, expression_ref> >’ changed in GCC 7.1
345 | rhs.add_binding({{y, x}});
| ^
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_constant(const std::vector<expression_ref>&, const std::vector<equation_info_t>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
1665 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1666 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
1665 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1666 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_var(const std::vector<expression_ref>&, const std::vector<equation_info_t>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar-case.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘expression_ref desugar_state::def_function(const std::vector<equation_info_t>&, const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[59/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/context.cc.o -MF src/computation/libcomputation.a.p/context.cc.o.d -o src/computation/libcomputation.a.p/context.cc.o -c ../src/computation/context.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/closure.H:4,
from ../src/computation/context.H:4,
from ../src/computation/context.cc:4:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, int> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void context_ref::run_transition_kernels()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[60/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/loader.cc.o -MF src/computation/libcomputation.a.p/loader.cc.o.d -o src/computation/libcomputation.a.p/loader.cc.o -c ../src/computation/loader.cc
[61/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/operations.cc.o -MF src/computation/libcomputation.a.p/operations.cc.o.d -o src/computation/libcomputation.a.p/operations.cc.o -c ../src/computation/operations.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/operations.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[62/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/module.cc.o -MF src/computation/libcomputation.a.p/module.cc.o.d -o src/computation/libcomputation.a.p/module.cc.o -c ../src/computation/module.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<expression_ref> peel_lambdas(expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::string&, std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref func_type(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref rename_top_level(const expression_ref&, const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from ../src/computation/module.cc:1:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, symbol_info>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/c++/10/regex:52,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = symbol_info; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘void Module::add_symbol(const symbol_info&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘void Module::export_symbol(const symbol_info&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, symbol_info>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, symbol_info> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, symbol_info> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Module::optimize(const Program&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Module::load_constructors()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Module::load_builtins(const module_loader&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from ../src/computation/module.cc:2:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Module::compile(const Program&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[63/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/param.cc.o -MF src/computation/libcomputation.a.p/param.cc.o.d -o src/computation/libcomputation.a.p/param.cc.o -c ../src/computation/param.cc
[64/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_driver.cc.o -MF src/computation/libcomputation.a.p/parser_driver.cc.o.d -o src/computation/libcomputation.a.p/parser_driver.cc.o -c ../src/computation/parser/driver.cc
[65/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_lexer.cc.o -MF src/computation/libcomputation.a.p/parser_lexer.cc.o.d -o src/computation/libcomputation.a.p/parser_lexer.cc.o -c ../src/computation/parser/lexer.cc
[66/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar.cc.o -MF src/computation/libcomputation.a.p/parser_desugar.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar.cc.o -c ../src/computation/parser/desugar.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<expression_ref> desugar_state::parse_fundecls(const std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘expression_ref desugar_state::desugar(const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/module.H:7,
from ../src/computation/parser/desugar.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘CDecls desugar_state::desugar_decls(const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[67/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_setup.cc.o -MF src/libbaliphy.a.p/mcmc_setup.cc.o.d -o src/libbaliphy.a.p/mcmc_setup.cc.o -c ../src/mcmc/setup.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/path.H:5,
from ../src/mcmc/setup.cc:31:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void do_sampling(const boost::program_options::variables_map&, owned_ptr<Model>&, long int, std::ostream&, const std::vector<std::function<void(const Model&, long int)> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[68/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_hmm.cc.o -MF src/libbaliphy.a.p/dp_hmm.cc.o.d -o src/libbaliphy.a.p/dp_hmm.cc.o -c ../src/dp/hmm.cc
[69/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp_hmm.cc.o -MF src/libbaliphy.a.p/dp_dp_hmm.cc.o.d -o src/libbaliphy.a.p/dp_dp_hmm.cc.o -c ../src/dp/dp_hmm.cc
[70/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_operator.cc.o -MF src/computation/libcomputation.a.p/expression_operator.cc.o.d -o src/computation/libcomputation.a.p/expression_operator.cc.o -c ../src/computation/expression/operator.cc
[71/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-cube.cc.o -MF src/libbaliphy.a.p/dp_dp-cube.cc.o.d -o src/libbaliphy.a.p/dp_dp-cube.cc.o -c ../src/dp/dp-cube.cc
[72/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_parser.cc.o -MF src/computation/libcomputation.a.p/parser_parser.cc.o.d -o src/computation/libcomputation.a.p/parser_parser.cc.o -c ../src/computation/parser/parser.cc
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/stl_vector.h:625:7: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
625 | vector(initializer_list<value_type> __l,
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<expression_ref> make_String_vec(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {yy::parser::stack_symbol_type}; _Tp = yy::parser::stack_symbol_type; _Alloc = std::allocator<yy::parser::stack_symbol_type>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void yy::parser::yypush_(const char*, yy::parser::stack_symbol_type&&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<yy::parser::stack_symbol_type*, std::vector<yy::parser::stack_symbol_type, std::allocator<yy::parser::stack_symbol_type> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref make_module(const string&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref type_apply(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref make_lambda(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref yy_make_string(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref yy_make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_infix(const string&, std::optional<int>&, std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from parser.y:14,
from ../src/computation/parser/parser.cc:41:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
parser.y: In member function ‘virtual int yy::parser::parse()’:
parser.y:664:208: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:672:239: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:740:196: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:741:156: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:864:194: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:890:202: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:897:160: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:899:205: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:956:300: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1005:242: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1112:155: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1113:202: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1114:200: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
parser.y:1115:247: note: parameter passing for argument of type ‘std::initializer_list<expression_ref>’ changed in GCC 7.1
[73/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_constructor.cc.o -MF src/computation/libcomputation.a.p/expression_constructor.cc.o.d -o src/computation/libcomputation.a.p/expression_constructor.cc.o -c ../src/computation/expression/constructor.cc
[74/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression.cc.o -MF src/computation/libcomputation.a.p/expression_expression.cc.o.d -o src/computation/libcomputation.a.p/expression_expression.cc.o -c ../src/computation/expression/expression.cc
[75/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_AST_node.cc.o -MF src/computation/libcomputation.a.p/expression_AST_node.cc.o.d -o src/computation/libcomputation.a.p/expression_AST_node.cc.o -c ../src/computation/expression/AST_node.cc
[76/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_apply.cc.o -MF src/computation/libcomputation.a.p/expression_apply.cc.o.d -o src/computation/libcomputation.a.p/expression_apply.cc.o -c ../src/computation/expression/apply.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/apply.H:4,
from ../src/computation/expression/apply.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[77/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression_ref.cc.o -MF src/computation/libcomputation.a.p/expression_expression_ref.cc.o.d -o src/computation/libcomputation.a.p/expression_expression_ref.cc.o -c ../src/computation/expression/expression_ref.cc
../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list<expression_ref>)’:
../src/computation/expression/expression_ref.cc:331:1: note: parameter passing for argument of type ‘const std::initializer_list<expression_ref>’ changed in GCC 7.1
331 | expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S)
| ^~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::unique_ptr<expression> operator+(const expression&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
../src/computation/expression/expression_ref.cc: In constructor ‘EPtree::EPtree(const expression_ref&, std::initializer_list<std::pair<std::__cxx11::basic_string<char>, expression_ref> >)’:
../src/computation/expression/expression_ref.cc:544:1: note: parameter passing for argument of type ‘const std::initializer_list<std::pair<std::__cxx11::basic_string<char>, expression_ref> >’ changed in GCC 7.1
544 | EPtree::EPtree(const expression_ref& H, const std::initializer_list< std::pair<std::string, expression_ref> > S)
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/expression_ref.cc:4:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, expression_ref>}; _Tp = std::pair<std::__cxx11::basic_string<char>, expression_ref>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, expression_ref>, std::allocator<std::pair<std::__cxx11::basic_string<char>, expression_ref> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void EPtree::erase(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, expression_ref>*, std::vector<std::pair<std::__cxx11::basic_string<char>, expression_ref>, std::allocator<std::pair<std::__cxx11::basic_string<char>, expression_ref> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[78/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_substitute.cc.o -MF src/computation/libcomputation.a.p/expression_substitute.cc.o.d -o src/computation/libcomputation.a.p/expression_substitute.cc.o -c ../src/computation/expression/substitute.cc
[79/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_indexify.cc.o -MF src/computation/libcomputation.a.p/expression_indexify.cc.o.d -o src/computation/libcomputation.a.p/expression_indexify.cc.o -c ../src/computation/expression/indexify.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/indexify.H:4,
from ../src/computation/expression/indexify.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector<var>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[80/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_case.cc.o -MF src/computation/libcomputation.a.p/expression_case.cc.o.d -o src/computation/libcomputation.a.p/expression_case.cc.o -c ../src/computation/expression/case.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector<expression_ref>&, std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/case.cc:2:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector<expression_ref>&, const std::vector<expression_ref>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[81/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_tuple.cc.o -MF src/computation/libcomputation.a.p/expression_tuple.cc.o.d -o src/computation/libcomputation.a.p/expression_tuple.cc.o -c ../src/computation/expression/tuple.cc
[82/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_trim.cc.o -MF src/computation/libcomputation.a.p/expression_trim.cc.o.d -o src/computation/libcomputation.a.p/expression_trim.cc.o -c ../src/computation/expression/trim.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector<int>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/trim.H:4,
from ../src/computation/expression/trim.cc:1:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector<int>&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[83/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_let.cc.o -MF src/computation/libcomputation.a.p/expression_let.cc.o.d -o src/computation/libcomputation.a.p/expression_let.cc.o -c ../src/computation/expression/let.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector<expression_ref>&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/computation/expression/var.H:7,
from ../src/computation/expression/let.cc:1:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[84/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_list.cc.o -MF src/computation/libcomputation.a.p/expression_list.cc.o.d -o src/computation/libcomputation.a.p/expression_list.cc.o -c ../src/computation/expression/list.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘expression_ref cons(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::optional<EVector> list_to_evector(const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/list.H:4,
from ../src/computation/expression/list.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[85/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_var.cc.o -MF src/computation/libcomputation.a.p/expression_var.cc.o.d -o src/computation/libcomputation.a.p/expression_var.cc.o -c ../src/computation/expression/var.cc
[86/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_lambda.cc.o -MF src/computation/libcomputation.a.p/expression_lambda.cc.o.d -o src/computation/libcomputation.a.p/expression_lambda.cc.o -c ../src/computation/expression/lambda.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/expression/lambda.H:4,
from ../src/computation/expression/lambda.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[87/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_random_variable.cc.o -MF src/computation/libcomputation.a.p/expression_random_variable.cc.o.d -o src/computation/libcomputation.a.p/expression_random_variable.cc.o -c ../src/computation/expression/random_variable.cc
[88/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_reg_var.cc.o -MF src/computation/libcomputation.a.p/expression_reg_var.cc.o.d -o src/computation/libcomputation.a.p/expression_reg_var.cc.o -c ../src/computation/expression/reg_var.cc
[89/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_modifiable.cc.o -MF src/computation/libcomputation.a.p/expression_modifiable.cc.o.d -o src/computation/libcomputation.a.p/expression_modifiable.cc.o -c ../src/computation/expression/modifiable.cc
[90/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o -MF src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o.d -o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o -c ../src/computation/expression/resolved_symbol.cc
[91/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_bool.cc.o -MF src/computation/libcomputation.a.p/expression_bool.cc.o.d -o src/computation/libcomputation.a.p/expression_bool.cc.o -c ../src/computation/expression/bool.cc
[92/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_maybe.cc.o -MF src/computation/libcomputation.a.p/expression_maybe.cc.o.d -o src/computation/libcomputation.a.p/expression_maybe.cc.o -c ../src/computation/expression/maybe.cc
[93/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_args.cc.o -MF src/computation/libcomputation.a.p/machine_args.cc.o.d -o src/computation/libcomputation.a.p/machine_args.cc.o -c ../src/computation/machine/args.cc
[94/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_tokens.cc.o -MF src/computation/libcomputation.a.p/machine_tokens.cc.o.d -o src/computation/libcomputation.a.p/machine_tokens.cc.o -c ../src/computation/machine/tokens.cc
[95/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_do_block.cc.o -MF src/computation/libcomputation.a.p/expression_do_block.cc.o.d -o src/computation/libcomputation.a.p/expression_do_block.cc.o -c ../src/computation/expression/do_block.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘Stmts& Stmts::perform(const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘Stmts& Stmts::empty_stmt()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘Stmts& Stmts::perform(const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘expression_ref do_block::bind_and_log_model(const string&, const expression_ref&, std::vector<expression_ref>&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/expression/expression_ref.H:4,
from ../src/computation/expression/do_block.H:3,
from ../src/computation/expression/do_block.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘Stmts& Stmts::let(const Binds&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘Stmts& Stmts::rec(const do_block&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[96/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_evaluate.cc.o -MF src/computation/libcomputation.a.p/machine_evaluate.cc.o.d -o src/computation/libcomputation.a.p/machine_evaluate.cc.o -c ../src/computation/machine/evaluate.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:6:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator<closure>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<closure>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/machine/graph_register.H:5,
from ../src/computation/machine/evaluate.cc:6:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::pair<int, int> reg_heap::incremental_evaluate_(int)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<closure*, std::vector<closure> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[97/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_show_graph.cc.o -MF src/computation/libcomputation.a.p/machine_show_graph.cc.o.d -o src/computation/libcomputation.a.p/machine_show_graph.cc.o -c ../src/computation/machine/show_graph.cc
In file included from /usr/include/c++/10/set:60,
from ../src/computation/program.H:4,
from ../src/computation/machine/graph_register.H:12,
from ../src/computation/machine/show_graph.cc:3:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const int, expression_ref> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, expression_ref> >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from ../src/computation/program.H:7,
from ../src/computation/machine/graph_register.H:12,
from ../src/computation/machine/show_graph.cc:3:
/usr/include/c++/10/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map<int, expression_ref>&, const std::map<std::__cxx11::basic_string<char>, int>&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, expression_ref>, std::_Select1st<std::pair<const int, expression_ref> >, std::less<int>, std::allocator<std::pair<const int, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[98/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_sums.cc.o -MF src/computation/libcomputation.a.p/machine_sums.cc.o.d -o src/computation/libcomputation.a.p/machine_sums.cc.o -c ../src/computation/machine/sums.cc
[99/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_gc.cc.o -MF src/computation/libcomputation.a.p/machine_gc.cc.o.d -o src/computation/libcomputation.a.p/machine_gc.cc.o -c ../src/computation/machine/gc.cc
[100/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_reroot.cc.o -MF src/computation/libcomputation.a.p/machine_reroot.cc.o.d -o src/computation/libcomputation.a.p/machine_reroot.cc.o -c ../src/computation/machine/reroot.cc
[101/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_kind.cc.o -MF src/computation/libcomputation.a.p/expression_kind.cc.o.d -o src/computation/libcomputation.a.p/expression_kind.cc.o -c ../src/computation/expression/kind.cc
[102/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_effects.cc.o -MF src/computation/libcomputation.a.p/machine_effects.cc.o.d -o src/computation/libcomputation.a.p/machine_effects.cc.o -c ../src/computation/machine/effects.cc
[103/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_graph_register.cc.o -MF src/computation/libcomputation.a.p/machine_graph_register.cc.o.d -o src/computation/libcomputation.a.p/machine_graph_register.cc.o -c ../src/computation/machine/graph_register.cc
[104/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_free-vars.cc.o -MF src/computation/libcomputation.a.p/optimization_free-vars.cc.o.d -o src/computation/libcomputation.a.p/optimization_free-vars.cc.o -c ../src/computation/optimization/free-vars.cc
[105/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_float-out.cc.o -MF src/computation/libcomputation.a.p/optimization_float-out.cc.o.d -o src/computation/libcomputation.a.p/optimization_float-out.cc.o -c ../src/computation/optimization/float-out.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/optimization/float-out.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void float_binds_t::append_top(CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::pair<float_binds_t, int> float_out_from_decl_group(CDecls&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void float_out_from_module(std::vector<std::vector<std::pair<var, expression_ref> > >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[106/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_inliner.cc.o -MF src/computation/libcomputation.a.p/optimization_inliner.cc.o.d -o src/computation/libcomputation.a.p/optimization_inliner.cc.o -c ../src/computation/optimization/inliner.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/inliner.cc:3:
/usr/include/c++/10/bits/stl_vector.h: In function ‘inline_context unknown_context()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[107/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_set-levels.cc.o -MF src/computation/libcomputation.a.p/optimization_set-levels.cc.o.d -o src/computation/libcomputation.a.p/optimization_set-levels.cc.o -c ../src/computation/optimization/set-levels.cc
[108/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-engine.cc.o -MF src/libbaliphy.a.p/dp_dp-engine.cc.o.d -o src/libbaliphy.a.p/dp_dp-engine.cc.o -c ../src/dp/dp-engine.cc
[109/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_occurrence.cc.o -MF src/computation/libcomputation.a.p/optimization_occurrence.cc.o.d -o src/computation/libcomputation.a.p/optimization_occurrence.cc.o -c ../src/computation/optimization/occurrence.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/computation/operations.H:4,
from ../src/computation/optimization/occurrence.cc:4:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<std::vector<std::pair<var, expression_ref> > > occurrence_analyze_decls(CDecls, std::set<var>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::pair<expression_ref, std::set<var> > occurrence_analyzer(const expression_ref&, var_context)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[110/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-matrix.cc.o -MF src/libbaliphy.a.p/dp_dp-matrix.cc.o.d -o src/libbaliphy.a.p/dp_dp-matrix.cc.o -c ../src/dp/dp-matrix.cc
[111/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-array.cc.o -MF src/libbaliphy.a.p/dp_dp-array.cc.o.d -o src/libbaliphy.a.p/dp_dp-array.cc.o -c ../src/dp/dp-array.cc
[112/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_simplifier.cc.o -MF src/computation/libcomputation.a.p/optimization_simplifier.cc.o.d -o src/computation/libcomputation.a.p/optimization_simplifier.cc.o -c ../src/computation/optimization/simplifier.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/util/include/util/range.H:4,
from ../src/computation/optimization/simplifier.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<var, expression_ref>&}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<var, expression_ref> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<var, expression_ref>}; _Tp = std::pair<var, expression_ref>; _Alloc = std::allocator<std::pair<var, expression_ref> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/util/include/util/range.H:4,
from ../src/computation/optimization/simplifier.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<var, expression_ref>*, std::vector<std::pair<var, expression_ref> > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[113/297] rm -f src/computation/libcomputation.a && gcc-ar csrD src/computation/libcomputation.a src/computation/libcomputation.a.p/object.cc.o src/computation/libcomputation.a.p/closure.cc.o src/computation/libcomputation.a.p/program.cc.o src/computation/libcomputation.a.p/preprocess.cc.o src/computation/libcomputation.a.p/module.cc.o src/computation/libcomputation.a.p/loader.cc.o src/computation/libcomputation.a.p/context.cc.o src/computation/libcomputation.a.p/operations.cc.o src/computation/libcomputation.a.p/param.cc.o src/computation/libcomputation.a.p/parser_desugar.cc.o src/computation/libcomputation.a.p/parser_desugar-case.cc.o src/computation/libcomputation.a.p/parser_rename.cc.o src/computation/libcomputation.a.p/parser_driver.cc.o src/computation/libcomputation.a.p/parser_lexer.cc.o src/computation/libcomputation.a.p/parser_parser.cc.o src/computation/libcomputation.a.p/expression_operator.cc.o src/computation/libcomputation.a.p/expression_expression.cc.o src/computation/libcomputation.a.p/expression_constructor.cc.o src/computation/libcomputation.a.p/expression_expression_ref.cc.o src/computation/libcomputation.a.p/expression_AST_node.cc.o src/computation/libcomputation.a.p/expression_apply.cc.o src/computation/libcomputation.a.p/expression_substitute.cc.o src/computation/libcomputation.a.p/expression_indexify.cc.o src/computation/libcomputation.a.p/expression_let.cc.o src/computation/libcomputation.a.p/expression_case.cc.o src/computation/libcomputation.a.p/expression_trim.cc.o src/computation/libcomputation.a.p/expression_tuple.cc.o src/computation/libcomputation.a.p/expression_list.cc.o src/computation/libcomputation.a.p/expression_var.cc.o src/computation/libcomputation.a.p/expression_lambda.cc.o src/computation/libcomputation.a.p/expression_random_variable.cc.o src/computation/libcomputation.a.p/expression_modifiable.cc.o src/computation/libcomputation.a.p/expression_reg_var.cc.o src/computation/libcomputation.a.p/expression_bool.cc.o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o src/computation/libcomputation.a.p/expression_maybe.cc.o src/computation/libcomputation.a.p/expression_do_block.cc.o src/computation/libcomputation.a.p/machine_args.cc.o src/computation/libcomputation.a.p/machine_tokens.cc.o src/computation/libcomputation.a.p/machine_graph_register.cc.o src/computation/libcomputation.a.p/machine_show_graph.cc.o src/computation/libcomputation.a.p/machine_evaluate.cc.o src/computation/libcomputation.a.p/machine_sums.cc.o src/computation/libcomputation.a.p/machine_gc.cc.o src/computation/libcomputation.a.p/machine_reroot.cc.o src/computation/libcomputation.a.p/machine_effects.cc.o src/computation/libcomputation.a.p/expression_kind.cc.o src/computation/libcomputation.a.p/optimization_free-vars.cc.o src/computation/libcomputation.a.p/optimization_set-levels.cc.o src/computation/libcomputation.a.p/optimization_float-out.cc.o src/computation/libcomputation.a.p/optimization_occurrence.cc.o src/computation/libcomputation.a.p/optimization_inliner.cc.o src/computation/libcomputation.a.p/optimization_simplifier.cc.o
[114/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_3way.cc.o -MF src/libbaliphy.a.p/dp_3way.cc.o.d -o src/libbaliphy.a.p/dp_3way.cc.o -c ../src/dp/3way.cc
[115/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_2way.cc.o -MF src/libbaliphy.a.p/dp_2way.cc.o.d -o src/libbaliphy.a.p/dp_2way.cc.o -c ../src/dp/2way.cc
[116/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_alignment-sums.cc.o -MF src/libbaliphy.a.p/dp_alignment-sums.cc.o.d -o src/libbaliphy.a.p/dp_alignment-sums.cc.o -c ../src/dp/alignment-sums.cc
[117/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_5way.cc.o -MF src/libbaliphy.a.p/dp_5way.cc.o.d -o src/libbaliphy.a.p/dp_5way.cc.o -c ../src/dp/5way.cc
[118/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -c ../src/mcmc/sample-topology-SPR.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/dp/2way.H:24,
from ../src/mcmc/sample-topology-SPR.cc:26:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘spr_info::spr_info(const TreeInterface&, const tree_edge&, const spr_range&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/dp/2way.H:24,
from ../src/mcmc/sample-topology-SPR.cc:26:
/usr/include/c++/10/bits/stl_vector.h: In function ‘bool SPR_accept_or_reject_proposed_tree(Parameters&, std::vector<Parameters>&, const std::vector<log_double_t>&, const std::vector<log_double_t>&, const spr_info&, int, const spr_attachment_points&, const std::map<tree_edge, std::vector<int> >&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function ‘bool sample_SPR_search_one(Parameters&, MCMC::MoveStats&, const tree_edge&, const spr_range&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[119/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_mcmc.cc.o -MF src/libbaliphy.a.p/mcmc_mcmc.cc.o.d -o src/libbaliphy.a.p/mcmc_mcmc.cc.o -c ../src/mcmc/mcmc.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/mcmc.cc:31:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/mcmc.cc:31:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[120/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_proposals.cc.o -MF src/libbaliphy.a.p/mcmc_proposals.cc.o.d -o src/libbaliphy.a.p/mcmc_proposals.cc.o -c ../src/mcmc/proposals.cc
[121/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -MF src/libbaliphy.a.p/mcmc_slice-sampling.cc.o.d -o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -c ../src/mcmc/slice-sampling.cc
../src/mcmc/slice-sampling.cc: In function ‘std::pair<double, double> find_slice_boundaries_stepping_out(double, slice_function&, double, double, int)’:
../src/mcmc/slice-sampling.cc:373:91: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
373 | find_slice_boundaries_stepping_out(double x0,slice_function& g,double logy, double w,int m)
| ^
[122/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_AIS.cc.o -MF src/libbaliphy.a.p/mcmc_AIS.cc.o.d -o src/libbaliphy.a.p/mcmc_AIS.cc.o -c ../src/mcmc/AIS.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/AIS.H:4,
from ../src/mcmc/AIS.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr<Model>&, std::ostream&, std::vector<double>)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[123/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_moves.cc.o -MF src/libbaliphy.a.p/mcmc_moves.cc.o.d -o src/libbaliphy.a.p/mcmc_moves.cc.o -c ../src/mcmc/moves.cc
[124/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -MF src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -c ../src/mcmc/sample-branch-lengths.cc
[125/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -MF src/libbaliphy.a.p/mcmc_sample-alignment.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -c ../src/mcmc/sample-alignment.cc
[126/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_logger.cc.o -MF src/libbaliphy.a.p/mcmc_logger.cc.o.d -o src/libbaliphy.a.p/mcmc_logger.cc.o -c ../src/mcmc/logger.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from ../src/mcmc/mcmc.H:34,
from ../src/mcmc/logger.cc:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[127/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-node.cc.o -MF src/libbaliphy.a.p/mcmc_sample-node.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-node.cc.o -c ../src/mcmc/sample-node.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-node.cc:28:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘int sample_node_multi(std::vector<Parameters>&, const std::vector<std::vector<int> >&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[128/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o -MF src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o -c ../src/mcmc/sample-two-nodes.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tree/tree.H:31,
from ../src/mcmc/sample.H:23,
from ../src/mcmc/sample-two-nodes.cc:29:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘int sample_two_nodes_multi(std::vector<Parameters>&, const std::vector<A5::hmm_order>&, const std::vector<log_double_t>&, bool, bool)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[129/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-cube.cc.o -MF src/libbaliphy.a.p/mcmc_sample-cube.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-cube.cc.o -c ../src/mcmc/sample-cube.cc
[130/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o -c ../src/mcmc/sample-topology-NNI.cc
[131/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_parsimony.cc.o -MF src/libbaliphy.a.p/substitution_parsimony.cc.o.d -o src/libbaliphy.a.p/substitution_parsimony.cc.o -c ../src/substitution/parsimony.cc
[132/297] c++ -Isrc/trees-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-distances.p/tools_trees-distances.cc.o -MF src/trees-distances.p/tools_trees-distances.cc.o.d -o src/trees-distances.p/tools_trees-distances.cc.o -c ../src/tools/trees-distances.cc
[133/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_exponential.cc.o -MF src/libbaliphy.a.p/math_exponential.cc.o.d -o src/libbaliphy.a.p/math_exponential.cc.o -c ../src/math/exponential.cc
[134/297] /usr/bin/meson --internal exe --capture doc/pickout.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/pickout.md
[135/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-tri.cc.o -MF src/libbaliphy.a.p/mcmc_sample-tri.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-tri.cc.o -c ../src/mcmc/sample-tri.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/mcmc/sample-tri.cc:20:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator<log_double_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<log_double_t>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool sample_A3_multi_calculation::run_dp()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<log_double_t*, std::vector<log_double_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[136/297] /usr/bin/meson --internal exe --capture doc/cut-range.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/cut-range.md
[137/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_substitution.cc.o -MF src/libbaliphy.a.p/substitution_substitution.cc.o.d -o src/libbaliphy.a.p/substitution_substitution.cc.o -c ../src/substitution/substitution.cc
[138/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_TreeInterface.cc.o -MF src/libbaliphy.a.p/models_TreeInterface.cc.o.d -o src/libbaliphy.a.p/models_TreeInterface.cc.o -c ../src/models/TreeInterface.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tree/tree.H:31,
from ../src/models/TreeInterface.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::string write(const TreeInterface&, const std::vector<std::__cxx11::basic_string<char> >&, bool)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[139/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_pow2.cc.o -MF src/libbaliphy.a.p/math_pow2.cc.o.d -o src/libbaliphy.a.p/math_pow2.cc.o -c ../src/math/pow2.cc
[140/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_eigenvalue.cc.o -MF src/libbaliphy.a.p/math_eigenvalue.cc.o.d -o src/libbaliphy.a.p/math_eigenvalue.cc.o -c ../src/math/eigenvalue.cc
[141/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_rules.cc.o -MF src/libbaliphy.a.p/models_rules.cc.o.d -o src/libbaliphy.a.p/models_rules.cc.o -c ../src/models/rules.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from ../src/models/rules.cc:2:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from ../src/models/rules.H:5,
from ../src/models/rules.cc:3:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/rules.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/rules.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::input_stream_adapter]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[142/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_site-compression.cc.o -MF src/libbaliphy.a.p/models_site-compression.cc.o.d -o src/libbaliphy.a.p/models_site-compression.cc.o -c ../src/models/site-compression.cc
[143/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/imodel_imodel.cc.o -MF src/libbaliphy.a.p/imodel_imodel.cc.o.d -o src/libbaliphy.a.p/imodel_imodel.cc.o -c ../src/imodel/imodel.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/model.H:34,
from ../src/imodel/imodel.H:29,
from ../src/imodel/imodel.cc:27:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[144/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_choose.cc.o -MF src/libbaliphy.a.p/probability_choose.cc.o.d -o src/libbaliphy.a.p/probability_choose.cc.o -c ../src/probability/choose.cc
[145/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parse.cc.o -MF src/libbaliphy.a.p/models_parse.cc.o.d -o src/libbaliphy.a.p/models_parse.cc.o -c ../src/models/parse.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/parse.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/parse.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/parse.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘ptree parse_type(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘ptree parse(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[146/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_setup.cc.o -MF src/libbaliphy.a.p/models_setup.cc.o.d -o src/libbaliphy.a.p/models_setup.cc.o -c ../src/models/setup.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, ptree}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/stl_vector.h: In function ‘void use_block(translation_result_t&, const var&, const translation_result_t&, const string&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref generate_loggers(do_block&, const Loggers&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void maybe_log(std::vector<expression_ref>&, const string&, const expression_ref&, const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::value_type&&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
356 | _M_realloc_insert(begin() + __n, std::move(__v));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > extract_terms(ptree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator<pretty_model_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<pretty_model_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pretty_model_t*, std::vector<pretty_model_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/models/setup.cc:81:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, expression_ref>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, expression_ref>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/models/setup.cc:81:
/usr/include/c++/10/bits/stl_map.h: In function ‘translation_result_t get_model_function(const Rules&, const ptree&, const name_scope_t&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, expression_ref>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, expression_ref>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, expression_ref>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, expression_ref> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, expression_ref> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::operator[](nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/setup.cc:79:
/usr/include/c++/10/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’:
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[147/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parameters.cc.o -MF src/libbaliphy.a.p/models_parameters.cc.o.d -o src/libbaliphy.a.p/models_parameters.cc.o -c ../src/models/parameters.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/models/parameters.H:30,
from ../src/models/parameters.cc:31:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘EVector unaligned_alignments_on_tree(const TreeInterface&, const std::vector<std::vector<int> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘EVector unaligned_alignments_on_tree(const Tree&, const std::vector<std::vector<int> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<param, param, param>}; _Tp = std::tuple<param, param, param>; _Alloc = std::allocator<std::tuple<param, param, param> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::tuple<param, param, param> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {param}; _Tp = param; _Alloc = std::allocator<param>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<param>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {param}; _Tp = param; _Alloc = std::allocator<param>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘tree_constants::tree_constants(context*, const std::vector<std::__cxx11::basic_string<char> >&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::tuple<param, param, param>*, std::vector<std::tuple<param, param, param> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<param> get_params_from_array(context*, const expression_ref&, std::optional<int>)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<param> get_params_from_list(context*, const expression_ref&, std::optional<int>)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<param*, std::vector<param> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref tree_expression(const SequenceTree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Parameters*, int&, const alphabet&, const int&}; _Tp = data_partition_constants; _Alloc = std::allocator<data_partition_constants>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<data_partition_constants>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘Parameters::Parameters(const Program&, const key_map_t&, const std::vector<alignment>&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, const SequenceTree&, const std::vector<std::optional<int> >&, const std::vector<std::optional<int> >&, const std::vector<std::optional<int> >&, const std::vector<int>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<data_partition_constants*, std::vector<data_partition_constants> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/models/parameters.H:30,
from ../src/models/parameters.cc:31:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::string generate_atmodel_program(int, const std::vector<expression_ref>&, const std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const std::vector<model_t>&, const std::vector<std::optional<int> >&, const model_t&, const std::vector<int>&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[148/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_unification.cc.o -MF src/libbaliphy.a.p/models_unification.cc.o.d -o src/libbaliphy.a.p/models_unification.cc.o -c ../src/models/unification.cc
[149/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_typecheck.cc.o -MF src/libbaliphy.a.p/models_typecheck.cc.o.d -o src/libbaliphy.a.p/models_typecheck.cc.o -c ../src/models/typecheck.cc
In file included from /usr/include/c++/10/vector:67,
from ../src/models/typecheck.H:4,
from ../src/models/typecheck.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/stl_vector.h:625:7: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
625 | vector(initializer_list<value_type> __l,
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/models/typecheck.H:4,
from ../src/models/typecheck.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ptree&}; _Tp = ptree; _Alloc = std::allocator<ptree>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<ptree>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>&}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, ptree>}; _Tp = std::pair<std::__cxx11::basic_string<char>, ptree>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../src/models/typecheck.cc: In function ‘std::optional<std::pair<ptree, equations> > typecheck_and_annotate_get_state(const ptree&, const ptree&, const tr_name_scope_t&)’:
../src/models/typecheck.cc:488:69: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
488 | auto arg = ptree({{"value",ptree(state_name)},{"type","String"}});
| ^
../src/models/typecheck.cc:490:48: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
490 | auto model2 = ptree("get_state",{ {"",arg}});
| ^
../src/models/typecheck.cc:496:61: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
496 | model2 = ptree({{"value",model2},{"type",required_type}});
| ^
In file included from /usr/include/c++/10/set:60,
from ../src/models/unification.H:4,
from ../src/models/typecheck.H:7,
from ../src/models/typecheck.cc:1:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ptree>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ptree> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ptree> >]’:
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ptree>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ptree> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ptree> > >::const_iterator’ changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/models/typecheck.H:4,
from ../src/models/typecheck.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::pair<ptree, equations> typecheck_and_annotate_function(const Rules&, const ptree&, const ptree&, std::set<std::__cxx11::basic_string<char> >, const tr_name_scope_t&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, ptree>*, std::vector<std::pair<std::__cxx11::basic_string<char>, ptree> > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
../src/models/typecheck.cc:721:59: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
721 | model2 = ptree({{"value",model2},{"type",result_type}});
| ^
../src/models/typecheck.cc: In function ‘std::optional<std::pair<ptree, equations> > typecheck_and_annotate_let(const Rules&, const ptree&, const ptree&, std::set<std::__cxx11::basic_string<char> >, const tr_name_scope_t&)’:
../src/models/typecheck.cc:259:68: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
259 | auto model2 = ptree("let",{{var_name, var_exp2},{"",body_exp2}});
| ^
../src/models/typecheck.cc:265:61: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
265 | model2 = ptree({{"value",model2},{"type",required_type}});
| ^
../src/models/typecheck.cc: In function ‘std::optional<std::pair<ptree, equations> > typecheck_and_annotate_lambda(const Rules&, const ptree&, const ptree&, std::set<std::__cxx11::basic_string<char> >, const tr_name_scope_t&)’:
../src/models/typecheck.cc:334:52: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
334 | auto ftype = ptree("Function",{ {"",a},{"",b} });
| ^
../src/models/typecheck.cc:352:66: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
352 | auto model2 = ptree("function",{{"",pattern2},{"",body_exp2}});
| ^
../src/models/typecheck.cc:358:61: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
358 | model2 = ptree({{"value",model2},{"type",required_type}});
| ^
In file included from /usr/include/c++/10/vector:67,
from ../src/models/typecheck.H:4,
from ../src/models/typecheck.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘std::optional<std::pair<ptree, equations> > typecheck_and_annotate_tuple(const Rules&, const ptree&, const ptree&, std::set<std::__cxx11::basic_string<char> >, const tr_name_scope_t&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ptree*, std::vector<ptree> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
../src/models/typecheck.cc:414:61: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
414 | model2 = ptree({{"value",model2},{"type",required_type}});
| ^
../src/models/typecheck.cc: In function ‘std::optional<std::pair<ptree, equations> > typecheck_and_annotate_list(const Rules&, const ptree&, const ptree&, std::set<std::__cxx11::basic_string<char> >, const tr_name_scope_t&)’:
../src/models/typecheck.cc:436:45: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
436 | auto list_type = ptree("List",{ {"",a} });
| ^
../src/models/typecheck.cc:463:61: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
463 | model2 = ptree({{"value",model2},{"type",required_type}});
| ^
../src/models/typecheck.cc: In function ‘std::optional<std::pair<ptree, equations> > typecheck_and_annotate_var(const Rules&, const ptree&, const ptree&, std::set<std::__cxx11::basic_string<char> >, const tr_name_scope_t&)’:
../src/models/typecheck.cc:549:63: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
549 | auto model2 = ptree({{"value",model},{"type",result_type}});
| ^
../src/models/typecheck.cc: In function ‘std::optional<std::pair<ptree, equations> > typecheck_and_annotate_constant(const Rules&, const ptree&, const ptree&, std::set<std::__cxx11::basic_string<char> >, const tr_name_scope_t&)’:
../src/models/typecheck.cc:598:63: note: parameter passing for argument of type ‘std::initializer_list<std::pair<std::__cxx11::basic_string<char>, ptree> >’ changed in GCC 7.1
598 | auto model2 = ptree({{"value",model},{"type",result_type}});
| ^
[150/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_link2.cc.o -MF src/libbaliphy.a.p/tree-align_link2.cc.o.d -o src/libbaliphy.a.p/tree-align_link2.cc.o -c ../src/tree-align/link2.cc
[151/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_n_indels2.cc.o -MF src/libbaliphy.a.p/tree-align_n_indels2.cc.o.d -o src/libbaliphy.a.p/tree-align_n_indels2.cc.o -c ../src/tree-align/n_indels2.cc
[152/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_model.cc.o -MF src/libbaliphy.a.p/models_model.cc.o.d -o src/libbaliphy.a.p/models_model.cc.o -c ../src/models/model.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/util/include/util/ptree.H:5,
from ../src/models/model.cc:23:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/util/include/util/ptree.H:5,
from ../src/models/model.cc:23:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl<nlohmann::basic_json<> >; typename std::enable_if<(std::is_same<InputIT, nlohmann::detail::iter_impl<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value || std::is_same<InputIT, nlohmann::detail::iter_impl<const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType> > >::value), int>::type <anonymous> = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1431 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/set:60,
from ../src/models/model.cc:20:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from ../src/models/model.cc:21:
/usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/util/include/util/ptree.H:5,
from ../src/models/model.cc:23:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_array(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::json_sax_dom_parser<BasicJsonType>::start_object(std::size_t) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>; InputAdapterType = nlohmann::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[153/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_probability.cc.o -MF src/libbaliphy.a.p/probability_probability.cc.o.d -o src/libbaliphy.a.p/probability_probability.cc.o -c ../src/probability/probability.cc
In file included from ../src/probability/probability.cc:22:
/usr/include/boost/math/special_functions/gamma.hpp: In instantiation of ‘boost::math::detail::upper_incomplete_gamma_fract<T>::result_type boost::math::detail::upper_incomplete_gamma_fract<T>::operator()() [with T = long double; boost::math::detail::upper_incomplete_gamma_fract<T>::result_type = std::pair<long double, long double>]’:
/usr/include/boost/math/tools/fraction.hpp:216:20: required from ‘typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double; typename boost::math::tools::detail::fraction_traits<Gen>::result_type = long double; uintmax_t = long long unsigned int]’
/usr/include/boost/math/tools/fraction.hpp:251:31: required from ‘typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double; typename boost::math::tools::detail::fraction_traits<Gen>::result_type = long double]’
/usr/include/boost/math/special_functions/gamma.hpp:317:68: required from ‘T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = long double]’
/usr/include/boost/math/special_functions/gamma.hpp:1157:44: required from ‘T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = long double; Policy = boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’
/usr/include/boost/math/special_functions/gamma.hpp:2085:35: required from ‘typename boost::math::tools::promote_args<RT1, RT2>::type boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = boost::math::policies::policy<boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>; typename boost::math::tools::promote_args<RT1, RT2>::type = double]’
/usr/include/boost/math/special_functions/gamma.hpp:2093:18: required from ‘typename boost::math::tools::promote_args<RT1, RT2>::type boost::math::gamma_p(RT1, RT2) [with RT1 = double; RT2 = double; typename boost::math::tools::promote_args<RT1, RT2>::type = double]’
../src/probability/probability.cc:348:35: required from here
/usr/include/boost/math/special_functions/gamma.hpp:302:16: note: parameter passing for argument of type ‘std::pair<long double, long double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
302 | result_type operator()()
| ^~~~~~~~
[154/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -MF src/libbaliphy.a.p/alignment_alignment-constraint.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -c ../src/alignment/alignment-constraint.cc
[155/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-util2.cc.o -MF src/libbaliphy.a.p/alignment_alignment-util2.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-util2.cc.o -c ../src/alignment/alignment-util2.cc
[156/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tools_parsimony2.cc.o -MF src/libbaliphy.a.p/tools_parsimony2.cc.o.d -o src/libbaliphy.a.p/tools_parsimony2.cc.o -c ../src/tools/parsimony2.cc
[157/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/version.cc.o -MF src/libbaliphy.a.p/version.cc.o.d -o src/libbaliphy.a.p/version.cc.o -c ../src/version.cc
../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
67 | s<<__DATE__<<" "<<__TIME__;
| ^~~~~~~~
../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
67 | s<<__DATE__<<" "<<__TIME__;
| ^~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/nlohmann/json.hpp:37,
from ../src/util/include/util/json.hh:3,
from ../src/version.H:24,
from ../src/version.cc:20:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[158/297] c++ -Isrc/builtins/Array.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Array.so.p/Array.cc.o -MF src/builtins/Array.so.p/Array.cc.o.d -o src/builtins/Array.so.p/Array.cc.o -c ../src/builtins/Array.cc
[159/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/bali-phy.cc.o -MF src/bali-phy/bali-phy.p/bali-phy.cc.o.d -o src/bali-phy/bali-phy.p/bali-phy.cc.o -c ../src/bali-phy/bali-phy.cc
../src/bali-phy/bali-phy.cc: In function ‘void report_mem()’:
../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
122 | system(cmd.str().c_str());
| ~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/system/error_code.hpp:19,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from ../src/util/include/util/time.H:41,
from ../src/bali-phy/bali-phy.cc:30:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[160/297] rm -f src/libbaliphy.a && gcc-ar csrD src/libbaliphy.a src/libbaliphy.a.p/dp_dp_hmm.cc.o src/libbaliphy.a.p/dp_hmm.cc.o src/libbaliphy.a.p/dp_dp-engine.cc.o src/libbaliphy.a.p/dp_dp-array.cc.o src/libbaliphy.a.p/dp_dp-matrix.cc.o src/libbaliphy.a.p/dp_dp-cube.cc.o src/libbaliphy.a.p/dp_2way.cc.o src/libbaliphy.a.p/dp_3way.cc.o src/libbaliphy.a.p/dp_5way.cc.o src/libbaliphy.a.p/dp_alignment-sums.cc.o src/libbaliphy.a.p/mcmc_mcmc.cc.o src/libbaliphy.a.p/mcmc_proposals.cc.o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o src/libbaliphy.a.p/mcmc_AIS.cc.o src/libbaliphy.a.p/mcmc_logger.cc.o src/libbaliphy.a.p/mcmc_moves.cc.o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o src/libbaliphy.a.p/mcmc_sample-node.cc.o src/libbaliphy.a.p/mcmc_sample-cube.cc.o src/libbaliphy.a.p/mcmc_sample-tri.cc.o src/libbaliphy.a.p/mcmc_setup.cc.o src/libbaliphy.a.p/substitution_substitution.cc.o src/libbaliphy.a.p/substitution_parsimony.cc.o src/libbaliphy.a.p/math_exponential.cc.o src/libbaliphy.a.p/math_eigenvalue.cc.o src/libbaliphy.a.p/math_pow2.cc.o src/libbaliphy.a.p/models_parameters.cc.o src/libbaliphy.a.p/models_site-compression.cc.o src/libbaliphy.a.p/models_TreeInterface.cc.o src/libbaliphy.a.p/models_setup.cc.o src/libbaliphy.a.p/models_rules.cc.o src/libbaliphy.a.p/models_parse.cc.o src/libbaliphy.a.p/models_typecheck.cc.o src/libbaliphy.a.p/models_unification.cc.o src/libbaliphy.a.p/models_model.cc.o src/libbaliphy.a.p/tree-align_link2.cc.o src/libbaliphy.a.p/probability_choose.cc.o src/libbaliphy.a.p/probability_probability.cc.o src/libbaliphy.a.p/imodel_imodel.cc.o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o src/libbaliphy.a.p/alignment_alignment-util2.cc.o src/libbaliphy.a.p/tree-align_n_indels2.cc.o src/libbaliphy.a.p/tools_parsimony2.cc.o src/libbaliphy.a.p/version.cc.o
[161/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/link-partitions.cc.o -MF src/bali-phy/bali-phy.p/link-partitions.cc.o.d -o src/bali-phy/bali-phy.p/link-partitions.cc.o -c ../src/bali-phy/link-partitions.cc
[162/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/help.cc.o -MF src/bali-phy/bali-phy.p/help.cc.o.d -o src/bali-phy/bali-phy.p/help.cc.o -c ../src/bali-phy/help.cc
[163/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/A-T-model.cc.o -MF src/bali-phy/bali-phy.p/A-T-model.cc.o.d -o src/bali-phy/bali-phy.p/A-T-model.cc.o -c ../src/bali-phy/A-T-model.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from /usr/include/boost/program_options/errors.hpp:15,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from ../src/bali-phy/A-T-model.H:8,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector<model_t>&, const std::vector<model_t>&, const std::vector<model_t>&, const model_t&, const Parameters&, const boost::program_options::variables_map&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/bali-phy/A-T-model.H:4,
from ../src/bali-phy/A-T-model.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator<model_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<model_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<model_t> get_imodels(const Rules&, const shared_items<std::__cxx11::basic_string<char> >&, const SequenceTree&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<model_t*, std::vector<model_t> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘owned_ptr<Model> create_A_and_T_model(const Rules&, boost::program_options::variables_map&, const std::shared_ptr<module_loader>&, std::ostream&, std::ostream&, std::ostream&, nlohmann::json&, int, const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[164/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/system.cc.o -MF src/bali-phy/bali-phy.p/system.cc.o.d -o src/bali-phy/bali-phy.p/system.cc.o -c ../src/bali-phy/system.cc
[165/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/files.cc.o -MF src/bali-phy/bali-phy.p/files.cc.o.d -o src/bali-phy/bali-phy.p/files.cc.o -c ../src/bali-phy/files.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/system/error_code.hpp:19,
from /usr/include/boost/filesystem/path_traits.hpp:22,
from /usr/include/boost/filesystem/path.hpp:26,
from /usr/include/boost/filesystem/operations.hpp:26,
from ../src/bali-phy/files.cc:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[166/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/paths.cc.o -MF src/bali-phy/bali-phy.p/paths.cc.o.d -o src/bali-phy/bali-phy.p/paths.cc.o -c ../src/bali-phy/paths.cc
[167/297] c++ -Isrc/builtins/Data.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Data.so.p/Data.cc.o -MF src/builtins/Data.so.p/Data.cc.o.d -o src/builtins/Data.so.p/Data.cc.o -c ../src/builtins/Data.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/Data.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_read_file_lines(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[168/297] c++ -o src/builtins/Array.so src/builtins/Array.so.p/Array.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[169/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/loggers.cc.o -MF src/bali-phy/bali-phy.p/loggers.cc.o.d -o src/bali-phy/bali-phy.p/loggers.cc.o -c ../src/bali-phy/loggers.cc
In file included from /usr/include/c++/10/set:60,
from ../src/bali-phy/loggers.cc:1:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/bali-phy/loggers.H:4,
from ../src/bali-phy/loggers.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[170/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/cmd_line.cc.o -MF src/bali-phy/bali-phy.p/cmd_line.cc.o.d -o src/bali-phy/bali-phy.p/cmd_line.cc.o -c ../src/bali-phy/cmd_line.cc
[171/297] c++ -Isrc/builtins/Prelude.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Prelude.so.p/Prelude.cc.o -MF src/builtins/Prelude.so.p/Prelude.cc.o.d -o src/builtins/Prelude.so.p/Prelude.cc.o -c ../src/builtins/Prelude.cc
[172/297] c++ -o src/builtins/Prelude.so src/builtins/Prelude.so.p/Prelude.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[173/297] c++ -o src/builtins/Data.so src/builtins/Data.so.p/Data.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[174/297] c++ -o src/bali-phy/bali-phy src/bali-phy/bali-phy.p/link-partitions.cc.o src/bali-phy/bali-phy.p/bali-phy.cc.o src/bali-phy/bali-phy.p/help.cc.o src/bali-phy/bali-phy.p/A-T-model.cc.o src/bali-phy/bali-phy.p/files.cc.o src/bali-phy/bali-phy.p/loggers.cc.o src/bali-phy/bali-phy.p/system.cc.o src/bali-phy/bali-phy.p/cmd_line.cc.o src/bali-phy/bali-phy.p/paths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -ldl -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[175/297] c++ -Isrc/builtins/Pair.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Pair.so.p/Pair.cc.o -MF src/builtins/Pair.so.p/Pair.cc.o.d -o src/builtins/Pair.so.p/Pair.cc.o -c ../src/builtins/Pair.cc
[176/297] c++ -o src/builtins/Pair.so src/builtins/Pair.so.p/Pair.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[177/297] c++ -Isrc/builtins/Alphabet.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alphabet.so.p/Alphabet.cc.o -MF src/builtins/Alphabet.so.p/Alphabet.cc.o.d -o src/builtins/Alphabet.so.p/Alphabet.cc.o -c ../src/builtins/Alphabet.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Alphabet.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[178/297] c++ -o src/builtins/Alphabet.so src/builtins/Alphabet.so.p/Alphabet.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[179/297] c++ -Isrc/builtins/Modifiables.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Modifiables.so.p/Modifiables.cc.o -MF src/builtins/Modifiables.so.p/Modifiables.cc.o.d -o src/builtins/Modifiables.so.p/Modifiables.cc.o -c ../src/builtins/Modifiables.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Modifiables.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘expression_ref maybe_modifiable_structure(reg_heap&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[180/297] c++ -o src/builtins/Modifiables.so src/builtins/Modifiables.so.p/Modifiables.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[181/297] c++ -Isrc/builtins/PopGen.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/PopGen.so.p/PopGen.cc.o -MF src/builtins/PopGen.so.p/PopGen.cc.o.d -o src/builtins/PopGen.so.p/PopGen.cc.o -c ../src/builtins/PopGen.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/10/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/PopGen.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_read_phase2_file(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[182/297] c++ -o src/builtins/PopGen.so src/builtins/PopGen.so.p/PopGen.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[183/297] c++ -Isrc/builtins/Distribution.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Distribution.so.p/Distribution.cc.o -MF src/builtins/Distribution.so.p/Distribution.cc.o.d -o src/builtins/Distribution.so.p/Distribution.cc.o -c ../src/builtins/Distribution.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/Distribution.cc:2:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[184/297] c++ -o src/builtins/Distribution.so src/builtins/Distribution.so.p/Distribution.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[185/297] c++ -Isrc/builtins/Range.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Range.so.p/Range.cc.o -MF src/builtins/Range.so.p/Range.cc.o.d -o src/builtins/Range.so.p/Range.cc.o -c ../src/builtins/Range.cc
[186/297] c++ -Isrc/builtins/Alignment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alignment.so.p/Alignment.cc.o -MF src/builtins/Alignment.so.p/Alignment.cc.o.d -o src/builtins/Alignment.so.p/Alignment.cc.o -c ../src/builtins/Alignment.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Alignment.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_leaf_sequence_counts(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_sequence_names(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_sequences_from_alignment(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_select_range(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[187/297] c++ -o src/builtins/Range.so src/builtins/Range.so.p/Range.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[188/297] c++ -o src/builtins/Alignment.so src/builtins/Alignment.so.p/Alignment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[189/297] c++ -Isrc/builtins/Vector.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Vector.so.p/Vector.cc.o -MF src/builtins/Vector.so.p/Vector.cc.o.d -o src/builtins/Vector.so.p/Vector.cc.o -c ../src/builtins/Vector.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/Vector.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/builtins/Vector.cc:2:
/usr/include/c++/10/bits/stl_vector.h: In function ‘closure builtin_function_list_to_vector(OperationArgs&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[190/297] c++ -Isrc/builtins/SModel.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SModel.so.p/SModel.cc.o -MF src/builtins/SModel.so.p/SModel.cc.o.d -o src/builtins/SModel.so.p/SModel.cc.o -c ../src/builtins/SModel.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/SModel.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/SModel.cc:3:
/usr/include/c++/10/bits/stl_vector.h: In function ‘closure builtin_function_modulated_markov_smap(OperationArgs&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[191/297] c++ -o src/builtins/SModel.so src/builtins/SModel.so.p/SModel.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[192/297] c++ -o src/builtins/Vector.so src/builtins/Vector.so.p/Vector.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[193/297] c++ -Isrc/builtins/MCMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/MCMC.so.p/MCMC.cc.o -MF src/builtins/MCMC.so.p/MCMC.cc.o.d -o src/builtins/MCMC.so.p/MCMC.cc.o -c ../src/builtins/MCMC.cc
[194/297] c++ -o src/builtins/MCMC.so src/builtins/MCMC.so.p/MCMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[195/297] c++ -Isrc/builtins/Environment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Environment.so.p/Environment.cc.o -MF src/builtins/Environment.so.p/Environment.cc.o.d -o src/builtins/Environment.so.p/Environment.cc.o -c ../src/builtins/Environment.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Environment.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[196/297] c++ -o src/builtins/Environment.so src/builtins/Environment.so.p/Environment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[197/297] c++ -Isrc/builtins/Real.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Real.so.p/Real.cc.o -MF src/builtins/Real.so.p/Real.cc.o.d -o src/builtins/Real.so.p/Real.cc.o -c ../src/builtins/Real.cc
[198/297] c++ -o src/builtins/Real.so src/builtins/Real.so.p/Real.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[199/297] c++ -Isrc/builtins/Bits.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Bits.so.p/Bits.cc.o -MF src/builtins/Bits.so.p/Bits.cc.o.d -o src/builtins/Bits.so.p/Bits.cc.o -c ../src/builtins/Bits.cc
[200/297] c++ -o src/builtins/Bits.so src/builtins/Bits.so.p/Bits.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Bits.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[201/297] c++ -Isrc/builtins/Text.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Text.so.p/Text.cc.o -MF src/builtins/Text.so.p/Text.cc.o.d -o src/builtins/Text.so.p/Text.cc.o -c ../src/builtins/Text.cc
[202/297] c++ -Isrc/builtins/Foreign.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Foreign.so.p/Foreign.cc.o -MF src/builtins/Foreign.so.p/Foreign.cc.o.d -o src/builtins/Foreign.so.p/Foreign.cc.o -c ../src/builtins/Foreign.cc
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/config/no_tr1/functional.hpp:21,
from /usr/include/boost/smart_ptr/intrusive_ptr.hpp:24,
from /usr/include/boost/intrusive_ptr.hpp:16,
from ../src/computation/object.H:6,
from ../src/computation/machine/args.H:5,
from ../src/builtins/Foreign.cc:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> > >}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::json_value::destroy(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer; BinaryType = std::vector<unsigned char>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘nlohmann::json c_json(const expression_ref&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[203/297] c++ -o src/builtins/Foreign.so src/builtins/Foreign.so.p/Foreign.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Foreign.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[204/297] c++ -o src/builtins/Text.so src/builtins/Text.so.p/Text.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Text.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[205/297] c++ -Isrc/builtins/Char.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Char.so.p/Char.cc.o -MF src/builtins/Char.so.p/Char.cc.o.d -o src/builtins/Char.so.p/Char.cc.o -c ../src/builtins/Char.cc
[206/297] c++ -o src/builtins/Char.so src/builtins/Char.so.p/Char.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Char.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[207/297] c++ -Isrc/builtins/SMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SMC.so.p/SMC.cc.o -MF src/builtins/SMC.so.p/SMC.cc.o.d -o src/builtins/SMC.so.p/SMC.cc.o -c ../src/builtins/SMC.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/builtins/SMC.cc:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, int> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::pair<double, int> > compress_states(const std::vector<int>&, const std::vector<double>&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator<expression_ref>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<expression_ref>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::pair<double, int> > smc_trace(double, std::vector<double>, std::vector<double>, double, const alignment&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_smc_trace(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<expression_ref*, std::vector<expression_ref> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘log_double_t smc(double, std::vector<double>, std::vector<double>, double, const alignment&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘closure builtin_function_smc_density(OperationArgs&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[208/297] c++ -o src/builtins/SMC.so src/builtins/SMC.so.p/SMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -Wl,--end-group
[209/297] c++ -Isrc/model_P.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/model_P.p/tools_model_P.cc.o -MF src/model_P.p/tools_model_P.cc.o.d -o src/model_P.p/tools_model_P.cc.o -c ../src/tools/model_P.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/model_P.cc:21:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/model_P.cc:21:
/usr/include/c++/10/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[210/297] c++ -o src/model_P src/model_P.p/tools_model_P.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[211/297] c++ -Isrc/stats-select.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/stats-select.p/tools_stats-select.cc.o -MF src/stats-select.p/tools_stats-select.cc.o.d -o src/stats-select.p/tools_stats-select.cc.o -c ../src/tools/stats-select.cc
[212/297] c++ -o src/stats-select src/stats-select.p/tools_stats-select.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[213/297] c++ -Isrc/statreport.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/statreport.p/tools_statreport.cc.o -MF src/statreport.p/tools_statreport.cc.o.d -o src/statreport.p/tools_statreport.cc.o -c ../src/tools/statreport.cc
../src/tools/statreport.cc: In function ‘void show_mode(const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool)’:
../src/tools/statreport.cc:300:24: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
300 | auto m = mode(total);
| ^
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/statreport.cc:27:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/statreport.cc:27:
/usr/include/c++/10/bits/stl_vector.h: In function ‘int get_burn_in(const std::vector<double>&, double, int)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector<Table<double> >&, int, const std::vector<double>&, bool, double&, double&, double&)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/statreport.cc:27:
/usr/include/c++/10/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /usr/include/c++/10/valarray:38,
from ../src/tools/statistics.H:24,
from ../src/tools/statreport.cc:36:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[214/297] c++ -o src/statreport src/statreport.p/tools_statreport.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[215/297] c++ -Isrc/alignment-gild.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-gild.p/tools_alignment-gild.cc.o -MF src/alignment-gild.p/tools_alignment-gild.cc.o.d -o src/alignment-gild.p/tools_alignment-gild.cc.o -c ../src/tools/alignment-gild.cc
[216/297] c++ -Isrc/alignment-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-consensus.p/tools_alignment-consensus.cc.o -MF src/alignment-consensus.p/tools_alignment-consensus.cc.o.d -o src/alignment-consensus.p/tools_alignment-consensus.cc.o -c ../src/tools/alignment-consensus.cc
[217/297] c++ -Isrc/alignment-indices.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-indices.p/tools_alignment-indices.cc.o -MF src/alignment-indices.p/tools_alignment-indices.cc.o.d -o src/alignment-indices.p/tools_alignment-indices.cc.o -c ../src/tools/alignment-indices.cc
[218/297] c++ -o src/alignment-consensus src/alignment-consensus.p/tools_alignment-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[219/297] c++ -o src/alignment-gild src/alignment-gild.p/tools_alignment-gild.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[220/297] c++ -Isrc/alignment-translate.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-translate.p/tools_alignment-translate.cc.o -MF src/alignment-translate.p/tools_alignment-translate.cc.o.d -o src/alignment-translate.p/tools_alignment-translate.cc.o -c ../src/tools/alignment-translate.cc
[221/297] c++ -Isrc/alignment-chop-internal.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -MF src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o.d -o src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -c ../src/tools/alignment-chop-internal.cc
[222/297] c++ -o src/alignment-chop-internal src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[223/297] c++ -o src/alignment-indices src/alignment-indices.p/tools_alignment-indices.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[224/297] c++ -Isrc/alignment-max.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-max.p/tools_alignment-max.cc.o -MF src/alignment-max.p/tools_alignment-max.cc.o.d -o src/alignment-max.p/tools_alignment-max.cc.o -c ../src/tools/alignment-max.cc
[225/297] c++ -o src/alignment-max src/alignment-max.p/tools_alignment-max.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[226/297] c++ -Isrc/alignment-info.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-info.p/tools_alignment-info.cc.o -MF src/alignment-info.p/tools_alignment-info.cc.o.d -o src/alignment-info.p/tools_alignment-info.cc.o -c ../src/tools/alignment-info.cc
[227/297] c++ -o src/alignment-info src/alignment-info.p/tools_alignment-info.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[228/297] c++ -o src/alignment-translate src/alignment-translate.p/tools_alignment-translate.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[229/297] c++ -Isrc/alignment-find.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-find.p/tools_alignment-find.cc.o -MF src/alignment-find.p/tools_alignment-find.cc.o.d -o src/alignment-find.p/tools_alignment-find.cc.o -c ../src/tools/alignment-find.cc
[230/297] c++ -o src/alignment-find src/alignment-find.p/tools_alignment-find.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[231/297] c++ -Isrc/alignment-cat.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-cat.p/tools_alignment-cat.cc.o -MF src/alignment-cat.p/tools_alignment-cat.cc.o.d -o src/alignment-cat.p/tools_alignment-cat.cc.o -c ../src/tools/alignment-cat.cc
[232/297] c++ -o src/alignment-cat src/alignment-cat.p/tools_alignment-cat.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[233/297] c++ -Isrc/trees-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-consensus.p/tools_trees-consensus.cc.o -MF src/trees-consensus.p/tools_trees-consensus.cc.o.d -o src/trees-consensus.p/tools_trees-consensus.cc.o -c ../src/tools/trees-consensus.cc
In file included from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1819 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Distance = int; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<double, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<double, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<consensus_level_order>]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1666 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::pair<double, std::__cxx11::basic_string<char> > > get_consensus_levels(const std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from ../src/tools/trees-consensus.cc:21:
/usr/include/c++/10/bits/vector.tcc: In function ‘int main(int, char**)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, std::__cxx11::basic_string<char> >*, std::vector<std::pair<double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[234/297] c++ -o src/trees-consensus src/trees-consensus.p/tools_trees-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[235/297] c++ -Isrc/tree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -MF src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o.d -o src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -c ../src/tools/tree-mean-lengths.cc
[236/297] c++ -o src/tree-mean-lengths src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[237/297] c++ -Isrc/mctree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -MF src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o.d -o src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -c ../src/tools/mctree-mean-lengths.cc
[238/297] c++ -o src/mctree-mean-lengths src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[239/297] c++ -Isrc/trees-to-SRQ.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -MF src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o.d -o src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -c ../src/tools/trees-to-SRQ.cc
[240/297] c++ -o src/trees-to-SRQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[241/297] c++ -Isrc/pickout.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/pickout.p/tools_pickout.cc.o -MF src/pickout.p/tools_pickout.cc.o.d -o src/pickout.p/tools_pickout.cc.o -c ../src/tools/pickout.cc
[242/297] c++ -o src/pickout src/pickout.p/tools_pickout.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[243/297] c++ -Isrc/cut-range.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/cut-range.p/tools_cut-range.cc.o -MF src/cut-range.p/tools_cut-range.cc.o.d -o src/cut-range.p/tools_cut-range.cc.o -c ../src/tools/cut-range.cc
[244/297] c++ -o src/cut-range src/cut-range.p/tools_cut-range.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[245/297] c++ -o src/trees-distances src/trees-distances.p/tools_trees-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[246/297] c++ -Isrc/bali-subsample.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-subsample.p/tools_subsample.cc.o -MF src/bali-subsample.p/tools_subsample.cc.o.d -o src/bali-subsample.p/tools_subsample.cc.o -c ../src/tools/subsample.cc
[247/297] c++ -Isrc/alignments-diff.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignments-diff.p/tools_alignments-diff.cc.o -MF src/alignments-diff.p/tools_alignments-diff.cc.o.d -o src/alignments-diff.p/tools_alignments-diff.cc.o -c ../src/tools/alignments-diff.cc
[248/297] c++ -o src/alignments-diff src/alignments-diff.p/tools_alignments-diff.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[249/297] c++ -Isrc/alignment-thin.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-thin.p/tools_alignment-thin.cc.o -MF src/alignment-thin.p/tools_alignment-thin.cc.o.d -o src/alignment-thin.p/tools_alignment-thin.cc.o -c ../src/tools/alignment-thin.cc
[250/297] c++ -o src/alignment-thin src/alignment-thin.p/tools_alignment-thin.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[251/297] c++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_colors.cc.o -MF src/alignment-draw.p/tools_colors.cc.o.d -o src/alignment-draw.p/tools_colors.cc.o -c ../src/tools/colors.cc
[252/297] c++ -Isrc/tree-tool.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/tree-tool.p/tools_tree-tool.cc.o -MF src/tree-tool.p/tools_tree-tool.cc.o.d -o src/tree-tool.p/tools_tree-tool.cc.o -c ../src/tools/tree-tool.cc
[253/297] c++ -o src/tree-tool src/tree-tool.p/tools_tree-tool.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[254/297] c++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_bootstrap.cc.o -MF src/trees-bootstrap.p/tools_bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_bootstrap.cc.o -c ../src/tools/bootstrap.cc
[255/297] c++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_alignment-draw.cc.o -MF src/alignment-draw.p/tools_alignment-draw.cc.o.d -o src/alignment-draw.p/tools_alignment-draw.cc.o -c ../src/tools/alignment-draw.cc
In file included from /usr/include/c++/10/vector:72,
from ../src/tree/tree.H:31,
from ../src/tools/alignment-draw.cc:23:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<T> convertTo(const std::vector<std::__cxx11::basic_string<char> >&) [with T = double]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[256/297] c++ -o src/alignment-draw src/alignment-draw.p/tools_alignment-draw.cc.o src/alignment-draw.p/tools_colors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[257/297] c++ -Isrc/alignment-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-distances.p/tools_alignment-distances.cc.o -MF src/alignment-distances.p/tools_alignment-distances.cc.o.d -o src/alignment-distances.p/tools_alignment-distances.cc.o -c ../src/tools/alignment-distances.cc
[258/297] c++ -o src/alignment-distances src/alignment-distances.p/tools_alignment-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[259/297] c++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -MF src/trees-bootstrap.p/tools_trees-bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -c ../src/tools/trees-bootstrap.cc
../src/tools/trees-bootstrap.cc: In function ‘std::pair<double, double> am_sdsf(const tree_sample_collection&, int, const std::map<boost::dynamic_bitset<>, p_counts>&, double)’:
../src/tools/trees-bootstrap.cc:567:117: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
567 | am_sdsf(const tree_sample_collection& tree_dists, int d, const map<dynamic_bitset<>, p_counts>& counts, double min_f)
| ^
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../src/tools/trees-bootstrap.cc:35:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘double greater_than(const std::valarray<double>&, std::valarray<double>, double)’:
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
[260/297] c++ -o src/trees-bootstrap src/trees-bootstrap.p/tools_trees-bootstrap.cc.o src/trees-bootstrap.p/tools_bootstrap.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[261/297] c++ -Isrc/extract-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/extract-ancestors.p/tools_extract-ancestors.cc.o -MF src/extract-ancestors.p/tools_extract-ancestors.cc.o.d -o src/extract-ancestors.p/tools_extract-ancestors.cc.o -c ../src/tools/extract-ancestors.cc
[262/297] c++ -o src/extract-ancestors src/extract-ancestors.p/tools_extract-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[263/297] c++ -Isrc/draw-tree.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/draw-tree.p/tools_draw-tree.cc.o -MF src/draw-tree.p/tools_draw-tree.cc.o.d -o src/draw-tree.p/tools_draw-tree.cc.o -c ../src/tools/draw-tree.cc
../src/tools/draw-tree.cc: In function ‘MC_tree_with_lengths collapse_MC_tree(const MC_tree_with_lengths&)’:
../src/tools/draw-tree.cc:3351:10: warning: unused variable ‘right1’ [-Wunused-variable]
3351 | int right1 = MC1.mapping[b1];
| ^~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator<circular_range>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<circular_range>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<circular_range*, std::vector<circular_range> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../src/tools/draw-tree.cc:23:
/usr/include/c++/10/bits/stl_vector.h: In function ‘MC_tree_with_lengths get_MC_tree_with_lengths(const string&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector<point_position>&) const’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[264/297] c++ -o src/draw-tree src/draw-tree.p/tools_draw-tree.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm /usr/lib/arm-linux-gnueabihf/libcairo.so -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[265/297] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/model_P.md
[266/297] c++ -o src/bali-subsample src/bali-subsample.p/tools_subsample.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[267/297] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy.md
[268/297] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/stats-select.md
[269/297] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/statreport.md
[270/297] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-gild.md
[271/297] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-consensus.md
[272/297] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-max.md
[273/297] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-chop-internal.md
[274/297] /usr/bin/meson --internal exe --capture doc/alignment-info.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-info.md
[275/297] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-indices.md
[276/297] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-cat.md
[277/297] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-translate.md
[278/297] /usr/bin/meson --internal exe --capture doc/alignment-find.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-find.md
[279/297] /usr/bin/meson --internal exe --capture doc/trees-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-consensus.md
[280/297] /usr/bin/meson --internal exe --capture doc/tree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-mean-lengths.md
[281/297] /usr/bin/meson --internal exe --capture doc/mctree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/mctree-mean-lengths.md
[282/297] /usr/bin/meson --internal exe --capture doc/trees-to-SRQ.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-to-SRQ.md
[283/297] /usr/bin/meson --internal exe --capture doc/trees-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-distances.md
[284/297] /usr/bin/meson --internal exe --capture doc/alignment-thin.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-thin.md
[285/297] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignments-diff.md
[286/297] /usr/bin/meson --internal exe --capture doc/tree-tool.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-tool.md
[287/297] /usr/bin/meson --internal exe --capture doc/alignment-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-distances.md
[288/297] c++ -Isrc/summarize-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -MF src/summarize-ancestors.p/tools_summarize-ancestors.cc.o.d -o src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -c ../src/tools/summarize-ancestors.cc
[289/297] /usr/bin/meson --internal exe --capture doc/alignment-draw.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-draw.md
[290/297] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-bootstrap.md
[291/297] c++ -o src/summarize-ancestors src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX
[292/297] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/draw-tree.md
[293/297] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/extract-ancestors.md
[294/297] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/summarize-ancestors.md
[295/297] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-subsample.md
[296/297] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bp-analyze.md
[297/297] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy-pkg.md
dh_auto_test -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=3 meson test
ninja: Entering directory `/build/reproducible-path/bali-phy-3.6.0+dfsg/obj-arm-linux-gnueabihf'
[1/4] Generating git-version.h with a custom command
1/36 bali-phy version OK 0.05s
2/36 bali-phy help OK 0.06s
3/36 bali-phy 5d test OK 7.82s
4/36 bali-phy 5d +A 50 OK 25.61s
5/36 bali-phy 48 +A 3 OK 43.64s
6/36 bali-phy 5d -A 200 OK 21.38s
7/36 model_P --help OK 0.03s
8/36 statreport --help OK 0.04s
9/36 stats-select --help OK 0.04s
10/36 alignment-gild --help OK 0.04s
11/36 alignment-consensus --help OK 0.05s
12/36 alignment-max --help OK 0.05s
13/36 alignment-chop-internal --help OK 0.04s
14/36 alignment-indices --help OK 0.04s
15/36 alignment-info --help OK 0.03s
16/36 alignment-cat --help OK 0.04s
17/36 alignment-translate --help OK 0.04s
18/36 alignment-find --help OK 0.04s
19/36 trees-consensus --help OK 0.05s
20/36 tree-mean-lengths --help OK 0.04s
21/36 mctree-mean-lengths --help OK 0.05s
22/36 trees-to-SRQ --help OK 0.04s
23/36 pickout --help OK 0.05s
24/36 cut-range --help OK 0.04s
25/36 trees-distances --help OK 0.04s
26/36 alignment-thin --help OK 0.05s
27/36 alignments-diff --help OK 0.04s
28/36 tree-tool --help OK 0.03s
29/36 alignment-distances --help OK 0.04s
30/36 alignment-draw --help OK 0.04s
31/36 trees-bootstrap --help OK 0.04s
32/36 draw-tree --help OK 0.10s
33/36 extract-ancestors --help OK 0.05s
34/36 summarize-ancestors --help OK 0.04s
35/36 subsample --help OK 0.04s
36/36 bali-phy testsuite OK 539.03s
Ok: 36
Expected Fail: 0
Fail: 0
Unexpected Pass: 0
Skipped: 0
Timeout: 0
Full log written to /build/reproducible-path/bali-phy-3.6.0+dfsg/obj-arm-linux-gnueabihf/meson-logs/testlog.txt
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=meson
dh_prep -O--buildsystem=meson
dh_auto_install -O--buildsystem=meson
cd obj-arm-linux-gnueabihf && DESTDIR=/build/reproducible-path/bali-phy-3.6.0\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install
[1/5] Generating git-version.h with a custom command
[1/2] Installing files.
Installing subdir /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Range.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Parameters.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Prelude.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Parse.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/SModel.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/IModel.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/PopGen.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Tree.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/SMC.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/MCMC.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Compiler/IO.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Compiler/Num.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Compiler/Base.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Compiler/ST.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Compiler/Enum.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Compiler/Real.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/BAliPhy/ATModel.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/BAliPhy/ATModel/DataPartition.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Tuple.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Bool.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Either.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/ReadFile.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Set.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/List.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Array.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Char.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Ord.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/BitVector.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Text.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Map.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/JSON.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Matrix.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Eq.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Ix.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Function.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Data/Maybe.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/System/Environment.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/System
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/SModel/Frequency.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/SModel/ReversibleMarkov.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/SModel/Nucleotides.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/SModel/Doublets.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/SModel/Codons.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/SModel/Likelihood.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Bio/Alphabet.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Bio/Sequence.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Bio/Alignment.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Bio/Alignment/Pairwise.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Bio/Alignment/Matrix.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Random.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Uniform.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Normal.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/FakeDist.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Exponential.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Beta.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Categorical.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Geometric.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Dirichlet.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Poisson.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Gamma.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/List.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Discrete.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Cauchy.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/RandomAlignment.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Binomial.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Tree.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Bernoulli.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Laplace.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/DirichletProcess.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Mixture.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/ExpTransform.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Control/DeepSeq.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Control/Monad.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Foreign/Introspection.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Foreign/Pair.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Foreign/String.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Foreign/Vector.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/haskell/Tree/Newick.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Tree
Installing subdir /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/equ.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/sample.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/f81.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m8.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/markov_modulate_mixture.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/x3x3.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/x3_sym.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/gwF.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/tn93.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/get_q.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m8a.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/f61.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/gy94.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/rs05.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/x2.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/k80.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/f3x4.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/scaled_mixture.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/dNdS.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/fMutSel.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/branch_site.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/wag.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/density.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/pam.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/x2x2.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/gtr_sym.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/rs07.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/mut_sel.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/mg94_ext.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/empirical.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/multi_rate.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m3.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/x3.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m2a.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/mg94.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m1a.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m8a_test.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/lg08_freq.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/inv.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/hky85.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/jc69.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/multiMixtureModel.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/mut_sel_aa.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/mg94k.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/fMutSel0.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/lg08.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/rs07_relaxed_rates.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m7.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/jtt.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/wag_freq.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/mixture.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/rna_16a.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/gy94_ext.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/parameter_mixture.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/hky85_sym.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/f1x4.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/gtr.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/f.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/tn93_sym.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m3_test.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/fe.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/m2a_test.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/x2_sym.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/Covarion/huelsenbeck02.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/Covarion/wang07.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/Covarion/galtier01.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/Covarion/ts98.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/Frequencies/uniform.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/Rates/gamma.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/Rates/free.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/models/Rates/log_normal.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/bernoulli.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/laplace.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/log_laplace.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/binomial.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/geometric.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/log_gamma.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/uniform_int.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/gamma.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/shifted_gamma.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/exponential.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/cauchy.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/uniform.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/beta.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/normal.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/shifted_exponential.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/iid.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/poisson.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/symmetric_dirichlet_on.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/log_normal.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/distributions/symmetric_dirichlet.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/mul.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/standard_code.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/rna.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/replicate.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/uniform_discretize.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/quantile.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/dna.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/zip.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/map.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/getNucleotides.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/letter_pairs.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/codons.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/sin.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/sub.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/unit_mixture.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/tan.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/intToDouble.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/take.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/getAminoAcids.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/sqrt.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/num_branches.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/letters.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/exp.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/add.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/div.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/zipWith.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/cos.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/log.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/length.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/aa.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/constructors/Cons.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/bindings/functions/constructors/Nil.json to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors
Installing subdir /build/reproducible-path/bali-phy-3.6.0+dfsg/help to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/parameters.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/alphabets.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/iterations.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/set.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/verbose.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/seed.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/disable.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/test.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/package-path.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/name.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/imodel.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/smodel.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/config.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/link.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/enable.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/unalign.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/pre-burnin.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/branch-lengths.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/tree.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/subsample.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/model.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/align.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/alphabet.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/scale.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/print.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/version.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/commands/Rao-Blackwellize.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/parameters/priors.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/alphabets/Codons.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/alphabets/Triplets.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/alphabets/Doublets.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/help/alphabets/genetic-code.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets
Installing subdir /build/reproducible-path/bali-phy-3.6.0+dfsg/examples to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/models/Demo3.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/models/Airline.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/models/Demo4.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/models/Demo1.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/models/Coalmine.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/models/Demo5.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/models/Demo6.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/models/Demo2.hs to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This will copy the file,
but this will be changed in a future version of Meson to copy the symlink as is. Please update your
build definitions so that it will not break when the change happens.
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/papain.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ferns/orig.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ferns/cleaned.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ferns/config.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ferns/orig.nex to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ferns/config2.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ferns/README.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/mollusc.gb to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/NOTES.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/keep.pl to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/mollusc.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/5d.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/12d.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/48b.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/few-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/bglobin.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/10-globins.xml to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/globins.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/some.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/many.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/few.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/few-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/many-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Globins/few-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/HIV/HIVSIV.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/paper.txt to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30.aln to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37-muscle.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/table1.accessions to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/other.accessions to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/additional.accessions to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76-muscle.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30-muscle.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ITS/5.8S.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/5d.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-poy.command to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Enolase/enolase-38.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr
Installing src/bali-phy/bali-phy to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/builtins/Array.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Data.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Prelude.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alphabet.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Pair.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Modifiables.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Alignment.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/PopGen.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Distribution.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Range.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SModel.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/MCMC.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Vector.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Environment.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/SMC.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Real.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Bits.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Foreign.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Text.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/builtins/Char.so to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy
Installing src/model_P to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/statreport to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/stats-select to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-gild to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-consensus to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-max to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-chop-internal to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-indices to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-info to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-cat to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-translate to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-find to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/trees-consensus to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/tree-mean-lengths to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/mctree-mean-lengths to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/trees-to-SRQ to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/pickout to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/cut-range to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/trees-distances to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-thin to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignments-diff to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/tree-tool to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-distances to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/alignment-draw to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/trees-bootstrap to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/draw-tree to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/extract-ancestors to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/summarize-ancestors to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing src/bali-subsample to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing doc/bali-phy.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/model_P.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/statreport.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/stats-select.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-gild.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-consensus.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-max.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-chop-internal.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-indices.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-info.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-cat.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-translate.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-find.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-consensus.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-mean-lengths.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/mctree-mean-lengths.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-to-SRQ.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/pickout.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/cut-range.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-distances.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-thin.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignments-diff.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/tree-tool.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-distances.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/alignment-draw.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/trees-bootstrap.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/draw-tree.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/extract-ancestors.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/summarize-ancestors.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bali-subsample.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bp-analyze.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing doc/bali-phy-pkg.1 to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/scripts/bp-analyze to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/scripts/bali-phy-pkg to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/scripts/compare-runs.R to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/scripts/compare-runs2.R to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/scripts/tree-plot.R to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
Installing /build/reproducible-path/bali-phy-3.6.0+dfsg/scripts/tree-plot-3D.R to /build/reproducible-path/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec
dh_installdocs -O--buildsystem=meson
dh_installchangelogs -O--buildsystem=meson
dh_installman -O--buildsystem=meson
dh_installsystemduser -O--buildsystem=meson
dh_lintian -O--buildsystem=meson
dh_perl -O--buildsystem=meson
dh_link -O--buildsystem=meson
dh_strip_nondeterminism -O--buildsystem=meson
dh_compress -O--buildsystem=meson
dh_fixperms -O--buildsystem=meson
dh_missing -O--buildsystem=meson
dh_dwz -a -O--buildsystem=meson
dwz: debian/bali-phy/usr/bin/alignment-cat: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-chop-internal: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-consensus: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-distances: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-draw: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-find: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-gild: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-indices: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-info: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-max: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-thin: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignment-translate: .debug_info section not present
dwz: debian/bali-phy/usr/bin/alignments-diff: .debug_info section not present
dwz: debian/bali-phy/usr/bin/bali-phy: .debug_info section not present
dwz: debian/bali-phy/usr/bin/bali-subsample: .debug_info section not present
dwz: debian/bali-phy/usr/bin/cut-range: .debug_info section not present
dwz: debian/bali-phy/usr/bin/draw-tree: .debug_info section not present
dwz: debian/bali-phy/usr/bin/extract-ancestors: .debug_info section not present
dwz: debian/bali-phy/usr/bin/mctree-mean-lengths: .debug_info section not present
dwz: debian/bali-phy/usr/bin/model_P: .debug_info section not present
dwz: debian/bali-phy/usr/bin/pickout: .debug_info section not present
dwz: debian/bali-phy/usr/bin/statreport: .debug_info section not present
dwz: debian/bali-phy/usr/bin/stats-select: .debug_info section not present
dwz: debian/bali-phy/usr/bin/summarize-ancestors: .debug_info section not present
dwz: debian/bali-phy/usr/bin/tree-mean-lengths: .debug_info section not present
dwz: debian/bali-phy/usr/bin/tree-tool: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-bootstrap: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-consensus: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-distances: .debug_info section not present
dwz: debian/bali-phy/usr/bin/trees-to-SRQ: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Alignment.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Alphabet.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Array.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Bits.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Char.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Data.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Distribution.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Environment.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Foreign.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/MCMC.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Modifiables.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Pair.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/PopGen.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Prelude.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Range.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Real.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/SMC.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/SModel.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Text.so: .debug_info section not present
dwz: debian/bali-phy/usr/lib/bali-phy/Vector.so: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
dh_strip -a -O--buildsystem=meson
dh_makeshlibs -a -O--buildsystem=meson
dh_shlibdeps -a -O--buildsystem=meson
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Foreign.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/pickout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Bits.so contains an unresolvable reference to symbol _ZN14expression_refC1ERKb: it's probably a plugin
dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZN10expressionC1ERK14expression_refRKSt6vectorIS0_SaIS0_EE: it's probably a plugin
dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-cat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-find contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZNK20pairwise_alignment_t7flippedEv: it's probably a plugin
dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZN7EVectorC1ERKSt6vectorIdSaIdEE: it's probably a plugin
dpkg-shlibdeps: warning: 31 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _Z6seq_opR13OperationArgs: it's probably a plugin
dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/extract-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _Z16portable_getlineRSiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Char.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/summarize-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZTV11constructor: it's probably a plugin
dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin
dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z16show_stack_traceB5cxx11i: it's probably a plugin
dpkg-shlibdeps: warning: 33 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZN6CodonsC1ERK11NucleotidesRK10AminoAcidsRK12Genetic_Code: it's probably a plugin
dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Text.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin
dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: 44 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _Z14select_columnsRK9alignmentRKSt6vectorIiSaIiEE: it's probably a plugin
dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -O--buildsystem=meson
dh_gencontrol -O--buildsystem=meson
dh_md5sums -O--buildsystem=meson
dh_builddeb -O--buildsystem=meson
dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.6.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'bali-phy' in '../bali-phy_3.6.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../bali-phy_3.6.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/14016 and its subdirectories
I: Current time: Sun Jan 7 04:13:40 -12 2024
I: pbuilder-time-stamp: 1704644020