I: pbuilder: network access will be disabled during build
I: Current time: Sun Jul 11 19:17:37 -12 2021
I: pbuilder-time-stamp: 1626074257
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [berkeley-express_1.5.3+dfsg-1.dsc]
I: copying [./berkeley-express_1.5.3+dfsg.orig.tar.xz]
I: copying [./berkeley-express_1.5.3+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.BTcU5UPr/trustedkeys.kbx': General error
gpgv: Signature made Sun Nov 17 04:19:59 2019 -12
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./berkeley-express_1.5.3+dfsg-1.dsc
dpkg-source: info: extracting berkeley-express in berkeley-express-1.5.3+dfsg
dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling-fixes
dpkg-source: info: applying fix-bamtools-path
dpkg-source: info: applying drop-zlib
dpkg-source: info: applying correct-debug-flags.patch
dpkg-source: info: applying privacy-breach.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/13522/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='ec30392406404974af2d5c9197d06d22'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='13522'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.AJDoVrcVgH/pbuilderrc_ZleN --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.AJDoVrcVgH/b1 --logfile b1/build.log berkeley-express_1.5.3+dfsg-1.dsc'
SUDO_GID='113'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:8000/'
I: uname -a
Linux virt64c 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux
I: ls -l /bin
total 3580
-rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 26668 Sep 22 2020 cat
-rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 43112 Sep 22 2020 chown
-rwxr-xr-x 1 root root 92616 Sep 22 2020 cp
-rwxr-xr-x 1 root root 75524 Dec 10 2020 dash
-rwxr-xr-x 1 root root 75880 Sep 22 2020 date
-rwxr-xr-x 1 root root 55436 Sep 22 2020 dd
-rwxr-xr-x 1 root root 59912 Sep 22 2020 df
-rwxr-xr-x 1 root root 96764 Sep 22 2020 dir
-rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg
lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
-rwxr-xr-x 1 root root 22508 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
-rwxr-xr-x 1 root root 22496 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
-rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt
-rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount
-rwxr-xr-x 1 root root 124508 Nov 9 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip
-rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe
-rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip
-rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname
-rwxr-xr-x 1 root root 43180 Sep 22 2020 ln
-rwxr-xr-x 1 root root 35068 Feb 7 2020 login
-rwxr-xr-x 1 root root 96764 Sep 22 2020 ls
-rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk
-rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 34408 Feb 7 02:38 more
-rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount
-rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint
-rwxr-xr-x 1 root root 88524 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash
-rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 43104 Sep 22 2020 rm
-rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Jul 9 21:26 sh -> dash
-rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 55360 Sep 22 2020 stty
-rwsr-xr-x 1 root root 46704 Feb 7 02:38 su
-rwxr-xr-x 1 root root 22532 Sep 22 2020 sync
-rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar
-rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 67696 Sep 22 2020 touch
-rwxr-xr-x 1 root root 22496 Sep 22 2020 true
-rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount
-rwxr-xr-x 1 root root 22520 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress
-rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl
lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat
-rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp
-rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce
-rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep
-rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless
-rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore
-rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew
I: user script /srv/workspace/pbuilder/13522/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, libgoogle-perftools-dev, cmake, libprotobuf-dev, protobuf-compiler
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19398 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however:
Package libboost-thread-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-system-dev; however:
Package libboost-system-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however:
Package libboost-filesystem-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however:
Package libboost-program-options-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however:
Package libboost-date-time-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbamtools-dev; however:
Package libbamtools-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-tools-dev; however:
Package libboost-tools-dev is not installed.
pbuilder-satisfydepends-dummy depends on libgoogle-perftools-dev; however:
Package libgoogle-perftools-dev is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on libprotobuf-dev; however:
Package libprotobuf-dev is not installed.
pbuilder-satisfydepends-dummy depends on protobuf-compiler; however:
Package protobuf-compiler is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbamtools-dev{a} libbamtools2.5.1{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-tools-dev{a} libboost1.74-dev{a} libboost1.74-tools-dev{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgoogle-perftools-dev{a} libgoogle-perftools4{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libprotobuf-dev{a} libprotobuf-lite23{a} libprotobuf23{a} libprotoc23{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtcmalloc-minimal4{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} protobuf-compiler{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget
0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded.
Need to get 45.2 MB of archives. After unpacking 297 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB]
Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB]
Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB]
Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB]
Get: 6 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB]
Get: 7 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB]
Get: 8 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB]
Get: 9 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get: 10 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get: 11 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get: 12 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB]
Get: 13 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB]
Get: 14 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB]
Get: 15 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB]
Get: 16 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB]
Get: 17 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 18 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB]
Get: 19 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB]
Get: 20 http://deb.debian.org/debian bullseye/main armhf cmake-data all 3.18.4-2 [1725 kB]
Get: 21 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB]
Get: 22 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB]
Get: 23 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+b1 [304 kB]
Get: 24 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB]
Get: 25 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB]
Get: 26 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB]
Get: 27 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB]
Get: 28 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB]
Get: 29 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB]
Get: 30 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB]
Get: 31 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB]
Get: 32 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB]
Get: 33 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB]
Get: 34 http://deb.debian.org/debian bullseye/main armhf libjsoncpp24 armhf 1.9.4-4 [68.5 kB]
Get: 35 http://deb.debian.org/debian bullseye/main armhf librhash0 armhf 1.4.1-2 [144 kB]
Get: 36 http://deb.debian.org/debian bullseye/main armhf libuv1 armhf 1.40.0-2 [120 kB]
Get: 37 http://deb.debian.org/debian bullseye/main armhf cmake armhf 3.18.4-2 [3534 kB]
Get: 38 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get: 39 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB]
Get: 40 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 41 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 42 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get: 43 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get: 44 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get: 45 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB]
Get: 46 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB]
Get: 47 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB]
Get: 48 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 49 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 50 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB]
Get: 51 http://deb.debian.org/debian bullseye/main armhf libbamtools2.5.1 armhf 2.5.1+dfsg-9 [141 kB]
Get: 52 http://deb.debian.org/debian bullseye/main armhf libbamtools-dev armhf 2.5.1+dfsg-9 [195 kB]
Get: 53 http://deb.debian.org/debian bullseye/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get: 54 http://deb.debian.org/debian bullseye/main armhf libboost-atomic1.74.0 armhf 1.74.0-9 [244 kB]
Get: 55 http://deb.debian.org/debian bullseye/main armhf libboost-atomic1.74-dev armhf 1.74.0-9 [245 kB]
Get: 56 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74.0 armhf 1.74.0-9 [248 kB]
Get: 57 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74-dev armhf 1.74.0-9 [255 kB]
Get: 58 http://deb.debian.org/debian bullseye/main armhf libboost-date-time1.74.0 armhf 1.74.0-9 [241 kB]
Get: 59 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74.0 armhf 1.74.0-9 [321 kB]
Get: 60 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74-dev armhf 1.74.0-9 [394 kB]
Get: 61 http://deb.debian.org/debian bullseye/main armhf libboost-date-time1.74-dev armhf 1.74.0-9 [250 kB]
Get: 62 http://deb.debian.org/debian bullseye/main armhf libboost-date-time-dev armhf 1.74.0.3 [4332 B]
Get: 63 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74.0 armhf 1.74.0-9 [275 kB]
Get: 64 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB]
Get: 65 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB]
Get: 66 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74-dev armhf 1.74.0-9 [289 kB]
Get: 67 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem-dev armhf 1.74.0.3 [4368 B]
Get: 68 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74.0 armhf 1.74.0-9 [339 kB]
Get: 69 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74-dev armhf 1.74.0-9 [384 kB]
Get: 70 http://deb.debian.org/debian bullseye/main armhf libboost-program-options-dev armhf 1.74.0.3 [4340 B]
Get: 71 http://deb.debian.org/debian bullseye/main armhf libboost-system-dev armhf 1.74.0.3 [4468 B]
Get: 72 http://deb.debian.org/debian bullseye/main armhf libboost-thread1.74.0 armhf 1.74.0-9 [271 kB]
Get: 73 http://deb.debian.org/debian bullseye/main armhf libboost-thread1.74-dev armhf 1.74.0-9 [286 kB]
Get: 74 http://deb.debian.org/debian bullseye/main armhf libboost-thread-dev armhf 1.74.0.3 [4356 B]
Get: 75 http://deb.debian.org/debian bullseye/main armhf libboost1.74-tools-dev armhf 1.74.0-9 [1322 kB]
Get: 76 http://deb.debian.org/debian bullseye/main armhf libboost-tools-dev armhf 1.74.0.3 [4508 B]
Get: 77 http://deb.debian.org/debian bullseye/main armhf libtcmalloc-minimal4 armhf 2.8.1-1 [82.7 kB]
Get: 78 http://deb.debian.org/debian bullseye/main armhf libgoogle-perftools4 armhf 2.8.1-1 [169 kB]
Get: 79 http://deb.debian.org/debian bullseye/main armhf libgoogle-perftools-dev armhf 2.8.1-1 [447 kB]
Get: 80 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB]
Get: 81 http://deb.debian.org/debian bullseye/main armhf libprotobuf23 armhf 3.12.4-1 [777 kB]
Get: 82 http://deb.debian.org/debian bullseye/main armhf libprotobuf-lite23 armhf 3.12.4-1 [217 kB]
Get: 83 http://deb.debian.org/debian bullseye/main armhf libprotobuf-dev armhf 3.12.4-1 [1192 kB]
Get: 84 http://deb.debian.org/debian bullseye/main armhf libprotoc23 armhf 3.12.4-1 [704 kB]
Get: 85 http://deb.debian.org/debian bullseye/main armhf protobuf-compiler armhf 3.12.4-1 [74.7 kB]
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I: Building the package
I: Running cd /build/berkeley-express-1.5.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../berkeley-express_1.5.3+dfsg-1_source.changes
dpkg-buildpackage: info: source package berkeley-express
dpkg-buildpackage: info: source version 1.5.3+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <michael.crusoe@gmail.com>
dpkg-source --before-build .
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make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg'
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cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
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426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor 'LengthDistribution::LengthDistribution(std::string, std::string)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
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[100%] Linking CXX executable express
cd /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/express.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/express.dir/biascorrection.cpp.o CMakeFiles/express.dir/bundles.cpp.o CMakeFiles/express.dir/directiondetector.cpp.o CMakeFiles/express.dir/fragments.cpp.o CMakeFiles/express.dir/lengthdistribution.cpp.o CMakeFiles/express.dir/main.cpp.o CMakeFiles/express.dir/mapparser.cpp.o CMakeFiles/express.dir/markovmodel.cpp.o CMakeFiles/express.dir/mismatchmodel.cpp.o CMakeFiles/express.dir/robertsfilter.cpp.o CMakeFiles/express.dir/sequence.cpp.o CMakeFiles/express.dir/targets.cpp.o CMakeFiles/express.dir/threadsafety.cpp.o CMakeFiles/express.dir/alignments.pb.cc.o CMakeFiles/express.dir/targets.pb.cc.o -o express /usr/lib/arm-linux-gnueabihf/libboost_thread.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.74.0 -lbamtools -lprotobuf -lpthread -lrt /usr/lib/arm-linux-gnueabihf/libboost_atomic.so.1.74.0 -lpthread
make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target express
make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
dh_auto_test
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_installdirs
dh_auto_install
cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/berkeley-express-1.5.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/build/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend
make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
cd /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-1.5.3+dfsg /build/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf/src /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/express.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build
make[3]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/express.dir/build'.
make[3]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target express
make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/berkeley-express-1.5.3+dfsg/debian/tmp/usr/bin/express
make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg/obj-arm-linux-gnueabihf'
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
debian/rules override_dh_compress
make[1]: Entering directory '/build/berkeley-express-1.5.3+dfsg'
dh_compress --exclude=express-doc.pdf
make[1]: Leaving directory '/build/berkeley-express-1.5.3+dfsg'
dh_fixperms
dh_missing
dh_dwz
dh_strip
dh_makeshlibs
dh_shlibdeps
dpkg-shlibdeps: warning: debian/berkeley-express/usr/lib/debian-med/bin/express contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'berkeley-express' in '../berkeley-express_1.5.3+dfsg-1_armhf.deb'.
dpkg-deb: building package 'berkeley-express-dbgsym' in '../berkeley-express-dbgsym_1.5.3+dfsg-1_armhf.deb'.
dpkg-deb: building package 'berkeley-express-doc' in '../berkeley-express-doc_1.5.3+dfsg-1_all.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../berkeley-express_1.5.3+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/13522 and its subdirectories
I: Current time: Sun Jul 11 19:24:06 -12 2021
I: pbuilder-time-stamp: 1626074646