I: pbuilder: network access will be disabled during build
I: Current time: Fri Aug 13 14:42:21 -12 2021
I: pbuilder-time-stamp: 1628908941
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libbio-variation-perl_1.7.5-2.dsc]
I: copying [./libbio-variation-perl_1.7.5.orig.tar.gz]
I: copying [./libbio-variation-perl_1.7.5-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.rxE8QmiD/trustedkeys.kbx': General error
gpgv: Signature made Thu Mar 4 00:57:08 2021 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbio-variation-perl_1.7.5-2.dsc
dpkg-source: info: extracting libbio-variation-perl in libbio-variation-perl-1.7.5
dpkg-source: info: unpacking libbio-variation-perl_1.7.5.orig.tar.gz
dpkg-source: info: unpacking libbio-variation-perl_1.7.5-2.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/10539/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='e1496d79c31649e5b7ce4b8f10b4e732'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='10539'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.v9uj4AnG6y/pbuilderrc_f4ZG --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.v9uj4AnG6y/b1 --logfile b1/build.log libbio-variation-perl_1.7.5-2.dsc'
SUDO_GID='112'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:8000/'
I: uname -a
Linux virt32b 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-4 (2021-08-03) armv7l GNU/Linux
I: ls -l /bin
total 3580
-rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 26668 Sep 22 2020 cat
-rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 43112 Sep 22 2020 chown
-rwxr-xr-x 1 root root 92616 Sep 22 2020 cp
-rwxr-xr-x 1 root root 75524 Dec 10 2020 dash
-rwxr-xr-x 1 root root 75880 Sep 22 2020 date
-rwxr-xr-x 1 root root 55436 Sep 22 2020 dd
-rwxr-xr-x 1 root root 59912 Sep 22 2020 df
-rwxr-xr-x 1 root root 96764 Sep 22 2020 dir
-rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg
lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
-rwxr-xr-x 1 root root 22508 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
-rwxr-xr-x 1 root root 22496 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
-rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt
-rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount
-rwxr-xr-x 1 root root 124508 Nov 9 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip
-rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe
-rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip
-rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname
-rwxr-xr-x 1 root root 43180 Sep 22 2020 ln
-rwxr-xr-x 1 root root 35068 Feb 7 2020 login
-rwxr-xr-x 1 root root 96764 Sep 22 2020 ls
-rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk
-rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 34408 Jul 28 07:09 more
-rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount
-rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint
-rwxr-xr-x 1 root root 88524 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash
-rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 43104 Sep 22 2020 rm
-rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Aug 10 21:26 sh -> dash
-rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 55360 Sep 22 2020 stty
-rwsr-xr-x 1 root root 46704 Jul 28 07:09 su
-rwxr-xr-x 1 root root 22532 Sep 22 2020 sync
-rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar
-rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 67696 Sep 22 2020 touch
-rwxr-xr-x 1 root root 22496 Sep 22 2020 true
-rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount
-rwxr-xr-x 1 root root 22520 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress
-rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl
lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat
-rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp
-rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce
-rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep
-rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless
-rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore
-rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew
I: user script /srv/workspace/pbuilder/10539/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), perl, libbio-perl-perl, libbio-db-ncbihelper-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19398 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
Package libbio-perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libbio-db-ncbihelper-perl; however:
Package libbio-db-ncbihelper-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
Package libtest-most-perl is not installed.
pbuilder-satisfydepends-dummy depends on libbio-db-embl-perl; however:
Package libbio-db-embl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libio-string-perl; however:
Package libio-string-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-twig-perl; however:
Package libxml-twig-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-writer-perl; however:
Package libxml-writer-perl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-asn1-entrezgene-perl{a} libbio-cluster-perl{a} libbio-db-embl-perl{a} libbio-db-ncbihelper-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcache-cache-perl{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libencode-locale-perl{a} liberror-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu67{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libipc-sharelite-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-parser-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-perl-run-perl libcgi-fast-perl libclone-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget
0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded.
Need to get 24.6 MB of archives. After unpacking 82.1 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8 [138 kB]
Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB]
Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB]
Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB]
Get: 6 http://deb.debian.org/debian bullseye/main armhf netbase all 6.3 [19.9 kB]
Get: 7 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get: 8 http://deb.debian.org/debian bullseye/main armhf openssl armhf 1.1.1k-1 [826 kB]
Get: 9 http://deb.debian.org/debian bullseye/main armhf ca-certificates all 20210119 [158 kB]
Get: 10 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get: 11 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get: 12 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB]
Get: 13 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB]
Get: 14 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB]
Get: 15 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB]
Get: 16 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB]
Get: 17 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 18 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB]
Get: 19 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB]
Get: 20 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get: 21 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB]
Get: 22 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 23 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 24 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get: 25 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 26 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 27 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB]
Get: 28 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB]
Get: 29 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB]
Get: 30 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB]
Get: 31 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB]
Get: 32 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 33 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 34 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB]
Get: 35 http://deb.debian.org/debian bullseye/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 36 http://deb.debian.org/debian bullseye/main armhf libio-string-perl all 1.08-3.1 [11.8 kB]
Get: 37 http://deb.debian.org/debian bullseye/main armhf libdata-stag-perl all 0.14-2 [448 kB]
Get: 38 http://deb.debian.org/debian bullseye/main armhf libbio-perl-perl all 1.7.7-2 [2607 kB]
Get: 39 http://deb.debian.org/debian bullseye/main armhf liberror-perl all 0.17029-1 [31.0 kB]
Get: 40 http://deb.debian.org/debian bullseye/main armhf libipc-sharelite-perl armhf 0.17-4+b5 [23.5 kB]
Get: 41 http://deb.debian.org/debian bullseye/main armhf libcache-cache-perl all 1.08-2 [76.6 kB]
Get: 42 http://deb.debian.org/debian bullseye/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get: 43 http://deb.debian.org/debian bullseye/main armhf liburi-perl all 5.08-1 [90.6 kB]
Get: 44 http://deb.debian.org/debian bullseye/main armhf libhtml-parser-perl armhf 3.75-1+b1 [102 kB]
Get: 45 http://deb.debian.org/debian bullseye/main armhf libcgi-pm-perl all 4.51-1 [224 kB]
Get: 46 http://deb.debian.org/debian bullseye/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get: 47 http://deb.debian.org/debian bullseye/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 48 http://deb.debian.org/debian bullseye/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get: 49 http://deb.debian.org/debian bullseye/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get: 50 http://deb.debian.org/debian bullseye/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get: 51 http://deb.debian.org/debian bullseye/main armhf libhttp-message-perl all 6.28-1 [79.6 kB]
Get: 52 http://deb.debian.org/debian bullseye/main armhf libfile-listing-perl all 6.14-1 [12.4 kB]
Get: 53 http://deb.debian.org/debian bullseye/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get: 54 http://deb.debian.org/debian bullseye/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get: 55 http://deb.debian.org/debian bullseye/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get: 56 http://deb.debian.org/debian bullseye/main armhf perl-openssl-defaults armhf 5 [7360 B]
Get: 57 http://deb.debian.org/debian bullseye/main armhf libnet-ssleay-perl armhf 1.88-3+b1 [303 kB]
Get: 58 http://deb.debian.org/debian bullseye/main armhf libio-socket-ssl-perl all 2.069-1 [215 kB]
Get: 59 http://deb.debian.org/debian bullseye/main armhf libnet-http-perl all 6.20-1 [25.1 kB]
Get: 60 http://deb.debian.org/debian bullseye/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get: 61 http://deb.debian.org/debian bullseye/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get: 62 http://deb.debian.org/debian bullseye/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 63 http://deb.debian.org/debian bullseye/main armhf libwww-perl all 6.52-1 [192 kB]
Get: 64 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB]
Get: 65 http://deb.debian.org/debian bullseye/main armhf libxml-parser-perl armhf 2.46-2 [203 kB]
Get: 66 http://deb.debian.org/debian bullseye/main armhf libxml-twig-perl all 1:3.52-1 [181 kB]
Get: 67 http://deb.debian.org/debian bullseye/main armhf libbio-db-ncbihelper-perl all 1.7.6-4 [58.1 kB]
Get: 68 http://deb.debian.org/debian bullseye/main armhf libxml-writer-perl all 0.900-1 [29.9 kB]
Get: 69 http://deb.debian.org/debian bullseye/main armhf libbio-variation-perl all 1.7.5-2 [72.5 kB]
Get: 70 http://deb.debian.org/debian bullseye/main armhf libbio-cluster-perl all 1.7.3-5 [53.2 kB]
Get: 71 http://deb.debian.org/debian bullseye/main armhf libbio-asn1-entrezgene-perl all 1.730-2 [48.6 kB]
Get: 72 http://deb.debian.org/debian bullseye/main armhf libbio-db-embl-perl all 1.7.4-4 [7820 B]
Get: 73 http://deb.debian.org/debian bullseye/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get: 74 http://deb.debian.org/debian bullseye/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get: 75 http://deb.debian.org/debian bullseye/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get: 76 http://deb.debian.org/debian bullseye/main armhf libexception-class-perl all 1.44-1 [32.3 kB]
Get: 77 http://deb.debian.org/debian bullseye/main armhf libsub-uplevel-perl all 0.2800-1.1 [16.5 kB]
Get: 78 http://deb.debian.org/debian bullseye/main armhf libtest-deep-perl all 1.130-1 [49.3 kB]
Get: 79 http://deb.debian.org/debian bullseye/main armhf libtext-diff-perl all 1.45-1 [27.7 kB]
Get: 80 http://deb.debian.org/debian bullseye/main armhf libtest-differences-perl all 0.67-1 [18.7 kB]
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done.
Reading package lists...
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-> Finished parsing the build-deps
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fakeroot is already the newest version (1.25.3-1.1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/libbio-variation-perl-1.7.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-variation-perl_1.7.5-2_source.changes
dpkg-buildpackage: info: source package libbio-variation-perl
dpkg-buildpackage: info: source version 1.7.5-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build
dh build
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/build/libbio-variation-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/build/libbio-variation-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Variation
Writing MYMETA.yml and MYMETA.json
dh_auto_build
make -j3
make[1]: Entering directory '/build/libbio-variation-perl-1.7.5'
cp lib/Bio/Variation/VariantI.pm blib/lib/Bio/Variation/VariantI.pm
cp lib/Bio/Variation/IO.pm blib/lib/Bio/Variation/IO.pm
cp lib/Bio/Variation/DNAMutation.pm blib/lib/Bio/Variation/DNAMutation.pm
cp lib/Bio/Variation/AAChange.pm blib/lib/Bio/Variation/AAChange.pm
cp lib/Bio/Variation/SeqDiff.pm blib/lib/Bio/Variation/SeqDiff.pm
cp lib/Bio/Variation.pm blib/lib/Bio/Variation.pm
cp lib/Bio/Variation/IO/flat.pm blib/lib/Bio/Variation/IO/flat.pm
cp lib/Bio/Variation/Allele.pm blib/lib/Bio/Variation/Allele.pm
cp lib/Bio/Variation/AAReverseMutate.pm blib/lib/Bio/Variation/AAReverseMutate.pm
cp lib/Bio/Variation/IO/xml.pm blib/lib/Bio/Variation/IO/xml.pm
cp lib/Bio/Variation/SNP.pm blib/lib/Bio/Variation/SNP.pm
cp lib/Bio/Variation/RNAChange.pm blib/lib/Bio/Variation/RNAChange.pm
cp bin/bp_flanks blib/script/bp_flanks
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_flanks
Manifying 1 pod document
Manifying 12 pod documents
make[1]: Leaving directory '/build/libbio-variation-perl-1.7.5'
dh_auto_test
make -j3 test TEST_VERBOSE=1
make[1]: Entering directory '/build/libbio-variation-perl-1.7.5'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ...........
1..13
ok 1 - Bio/Variation.pm loaded ok
ok 2 - Bio/Variation/AAChange.pm loaded ok
ok 3 - Bio/Variation/AAReverseMutate.pm loaded ok
ok 4 - Bio/Variation/Allele.pm loaded ok
ok 5 - Bio/Variation/DNAMutation.pm loaded ok
ok 6 - Bio/Variation/IO.pm loaded ok
ok 7 - Bio/Variation/IO/flat.pm loaded ok
ok 8 - Bio/Variation/IO/xml.pm loaded ok
ok 9 - Bio/Variation/RNAChange.pm loaded ok
ok 10 - Bio/Variation/SNP.pm loaded ok
ok 11 - Bio/Variation/SeqDiff.pm loaded ok
ok 12 - Bio/Variation/VariantI.pm loaded ok
ok 13 - bin/bp_flanks compiled ok
ok
t/AAChange.t .............
1..27
ok 1 - use Bio::Variation::Allele;
ok 2 - use Bio::Variation::AAChange;
ok 3 - use Bio::Variation::RNAChange;
ok 4
ok 5 - An object of class 'Bio::Variation::AAChange' isa 'Bio::Variation::AAChange'
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26 - Trivial name is [V3A]
ok 27
ok
t/AAReverseMutate.t ......
1..16
ok 1 - use Bio::Variation::AAReverseMutate;
ok 2
ok 3 - An object of class 'Bio::Variation::AAReverseMutate' isa 'Bio::Variation::AAReverseMutate'
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10 - An object of class 'Bio::Variation::RNAChange' isa 'Bio::Variation::RNAChange'
ok 11
ok 12
ok 13
ok 14 - Codon_ori is |ttc|
ok 15
ok 16
ok
t/Allele.t ...............
1..14
ok 1 - use Bio::Variation::Allele;
ok 2 - An object of class 'Bio::Variation::Allele' isa 'Bio::Variation::Allele'
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
t/DNAMutation.t ..........
1..37
ok 1 - use Bio::Variation::DNAMutation;
ok 2 - use Bio::Variation::Allele;
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok
t/RNAChange.t ............
1..31
ok 1 - use Bio::Variation::Allele;
ok 2 - use Bio::Variation::RNAChange;
ok 3 - use Bio::Variation::AAChange;
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19 - label ismissense
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25 - Codon_ori is |gaa|
ok 26 - Codon_mut is |aaa|
ok 27
ok 28
ok 29
ok 30
ok 31
ok
t/SeqDiff.t ..............
1..44
ok 1 - use Bio::Variation::SeqDiff;
ok 2 - use Bio::Variation::DNAMutation;
ok 3 - use Bio::Variation::Allele;
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33 - An object of class 'Bio::Variation::DNAMutation' isa 'Bio::Variation::VariantI'
ok 34 - An object of class 'Bio::Variation::DNAMutation' isa 'Bio::Variation::VariantI'
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42 - An object of class 'Bio::PrimarySeq' isa 'Bio::PrimarySeq'
ok 43
ok 44
ok
t/SNP.t ..................
1..13
ok 1 - use Bio::Variation::SNP;
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok
t/Variation_IO.t .........
1..26
ok 1 - use Bio::Variation::IO;
ok 2
ok 3
ok 4
ok 5
ok 6 - test output file compared to input
ok 7
ok 8
ok 9
ok 10
ok 11 - test output file compared to input
ok 12
ok 13
ok 14
ok 15
ok 16 - test output file compared to input
ok 17
ok 18
ok 19
ok 20
ok 21 - test output file compared to input
ok 22
ok 23
ok 24
ok 25
ok 26 - test output file compared to input
ok
All tests successful.
Files=12, Tests=221, 14 wallclock secs ( 0.16 usr 0.03 sys + 10.00 cusr 0.83 csys = 11.02 CPU)
Result: PASS
make[1]: Leaving directory '/build/libbio-variation-perl-1.7.5'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_auto_install
make -j3 install DESTDIR=/build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/libbio-variation-perl-1.7.5'
Manifying 1 pod document
Manifying 12 pod documents
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/SeqDiff.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/AAChange.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/RNAChange.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/SNP.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/VariantI.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/AAReverseMutate.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/Allele.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/DNAMutation.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO/flat.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO/xml.pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man1/bp_flanks.1p
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::DNAMutation.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::AAReverseMutate.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO::flat.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO::xml.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::SNP.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::SeqDiff.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::Allele.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::RNAChange.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::AAChange.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::VariantI.3pm
Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/bin/bp_flanks
make[1]: Leaving directory '/build/libbio-variation-perl-1.7.5'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-variation-perl' in '../libbio-variation-perl_1.7.5-2_all.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../libbio-variation-perl_1.7.5-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/10539 and its subdirectories
I: Current time: Fri Aug 13 14:44:56 -12 2021
I: pbuilder-time-stamp: 1628909096