I: pbuilder: network access will be disabled during build
I: Current time: Sat Jan  6 14:28:32 -12 2024
I: pbuilder-time-stamp: 1704594512
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [librostlab_1.0.20-10.dsc]
I: copying [./librostlab_1.0.20.orig.tar.gz]
I: copying [./librostlab_1.0.20-10.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.IqPQEout/trustedkeys.kbx': General error
gpgv: Signature made Tue Feb 25 07:40:35 2020 
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./librostlab_1.0.20-10.dsc
dpkg-source: info: extracting librostlab in librostlab-1.0.20
dpkg-source: info: unpacking librostlab_1.0.20.orig.tar.gz
dpkg-source: info: unpacking librostlab_1.0.20-10.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/15403/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='armhf'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3 '
  DISTRIBUTION='bullseye'
  HOME='/root'
  HOST_ARCH='armhf'
  IFS=' 	
  '
  INVOCATION_ID='c60ab5897f8343e39152aa576a4f10fe'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='15403'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9z5JS6C2/pbuilderrc_bx42 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9z5JS6C2/b1 --logfile b1/build.log librostlab_1.0.20-10.dsc'
  SUDO_GID='113'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://10.0.0.15:3142/'
I: uname -a
  Linux virt64c 6.1.0-17-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux
I: ls -l /bin
  total 3580
  -rwxr-xr-x 1 root root 816764 Mar 27  2022 bash
  -rwxr-xr-x 3 root root  26052 Jul 20  2020 bunzip2
  -rwxr-xr-x 3 root root  26052 Jul 20  2020 bzcat
  lrwxrwxrwx 1 root root      6 Jul 20  2020 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root   2225 Jul 20  2020 bzdiff
  lrwxrwxrwx 1 root root      6 Jul 20  2020 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root   4877 Sep  4  2019 bzexe
  lrwxrwxrwx 1 root root      6 Jul 20  2020 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root   3775 Jul 20  2020 bzgrep
  -rwxr-xr-x 3 root root  26052 Jul 20  2020 bzip2
  -rwxr-xr-x 1 root root   9636 Jul 20  2020 bzip2recover
  lrwxrwxrwx 1 root root      6 Jul 20  2020 bzless -> bzmore
  -rwxr-xr-x 1 root root   1297 Jul 20  2020 bzmore
  -rwxr-xr-x 1 root root  26668 Sep 22  2020 cat
  -rwxr-xr-x 1 root root  43104 Sep 22  2020 chgrp
  -rwxr-xr-x 1 root root  38984 Sep 22  2020 chmod
  -rwxr-xr-x 1 root root  43112 Sep 22  2020 chown
  -rwxr-xr-x 1 root root  92616 Sep 22  2020 cp
  -rwxr-xr-x 1 root root  75524 Dec 10  2020 dash
  -rwxr-xr-x 1 root root  75880 Sep 22  2020 date
  -rwxr-xr-x 1 root root  55436 Sep 22  2020 dd
  -rwxr-xr-x 1 root root  59912 Sep 22  2020 df
  -rwxr-xr-x 1 root root  96764 Sep 22  2020 dir
  -rwxr-xr-x 1 root root  55012 Jan 20  2022 dmesg
  lrwxrwxrwx 1 root root      8 Nov  7  2019 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root      8 Nov  7  2019 domainname -> hostname
  -rwxr-xr-x 1 root root  22508 Sep 22  2020 echo
  -rwxr-xr-x 1 root root     28 Jan 25  2023 egrep
  -rwxr-xr-x 1 root root  22496 Sep 22  2020 false
  -rwxr-xr-x 1 root root     28 Jan 25  2023 fgrep
  -rwxr-xr-x 1 root root  47492 Jan 20  2022 findmnt
  -rwsr-xr-x 1 root root  26076 Feb 26  2021 fusermount
  -rwxr-xr-x 1 root root 124508 Jan 25  2023 grep
  -rwxr-xr-x 2 root root   2346 Apr 10  2022 gunzip
  -rwxr-xr-x 1 root root   6447 Apr 10  2022 gzexe
  -rwxr-xr-x 1 root root  64212 Apr 10  2022 gzip
  -rwxr-xr-x 1 root root  13784 Nov  7  2019 hostname
  -rwxr-xr-x 1 root root  43180 Sep 22  2020 ln
  -rwxr-xr-x 1 root root  35068 Feb  7  2020 login
  -rwxr-xr-x 1 root root  96764 Sep 22  2020 ls
  -rwxr-xr-x 1 root root  99940 Jan 20  2022 lsblk
  -rwxr-xr-x 1 root root  51408 Sep 22  2020 mkdir
  -rwxr-xr-x 1 root root  43184 Sep 22  2020 mknod
  -rwxr-xr-x 1 root root  30780 Sep 22  2020 mktemp
  -rwxr-xr-x 1 root root  34408 Jan 20  2022 more
  -rwsr-xr-x 1 root root  34400 Jan 20  2022 mount
  -rwxr-xr-x 1 root root   9824 Jan 20  2022 mountpoint
  -rwxr-xr-x 1 root root  88524 Sep 22  2020 mv
  lrwxrwxrwx 1 root root      8 Nov  7  2019 nisdomainname -> hostname
  lrwxrwxrwx 1 root root     14 Dec 16  2021 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root  26652 Sep 22  2020 pwd
  lrwxrwxrwx 1 root root      4 Mar 27  2022 rbash -> bash
  -rwxr-xr-x 1 root root  30740 Sep 22  2020 readlink
  -rwxr-xr-x 1 root root  43104 Sep 22  2020 rm
  -rwxr-xr-x 1 root root  30732 Sep 22  2020 rmdir
  -rwxr-xr-x 1 root root  14144 Sep 27  2020 run-parts
  -rwxr-xr-x 1 root root  76012 Dec 22  2018 sed
  lrwxrwxrwx 1 root root      4 Dec  7 09:26 sh -> dash
  -rwxr-xr-x 1 root root  22532 Sep 22  2020 sleep
  -rwxr-xr-x 1 root root  55360 Sep 22  2020 stty
  -rwsr-xr-x 1 root root  46704 Jan 20  2022 su
  -rwxr-xr-x 1 root root  22532 Sep 22  2020 sync
  -rwxr-xr-x 1 root root 340872 Feb 17  2021 tar
  -rwxr-xr-x 1 root root   9808 Sep 27  2020 tempfile
  -rwxr-xr-x 1 root root  67696 Sep 22  2020 touch
  -rwxr-xr-x 1 root root  22496 Sep 22  2020 true
  -rwxr-xr-x 1 root root   9636 Feb 26  2021 ulockmgr_server
  -rwsr-xr-x 1 root root  22108 Jan 20  2022 umount
  -rwxr-xr-x 1 root root  22520 Sep 22  2020 uname
  -rwxr-xr-x 2 root root   2346 Apr 10  2022 uncompress
  -rwxr-xr-x 1 root root  96764 Sep 22  2020 vdir
  -rwxr-xr-x 1 root root  38512 Jan 20  2022 wdctl
  lrwxrwxrwx 1 root root      8 Nov  7  2019 ypdomainname -> hostname
  -rwxr-xr-x 1 root root   1984 Apr 10  2022 zcat
  -rwxr-xr-x 1 root root   1678 Apr 10  2022 zcmp
  -rwxr-xr-x 1 root root   5898 Apr 10  2022 zdiff
  -rwxr-xr-x 1 root root     29 Apr 10  2022 zegrep
  -rwxr-xr-x 1 root root     29 Apr 10  2022 zfgrep
  -rwxr-xr-x 1 root root   2081 Apr 10  2022 zforce
  -rwxr-xr-x 1 root root   8049 Apr 10  2022 zgrep
  -rwxr-xr-x 1 root root   2206 Apr 10  2022 zless
  -rwxr-xr-x 1 root root   1842 Apr 10  2022 zmore
  -rwxr-xr-x 1 root root   4577 Apr 10  2022 znew
I: user script /srv/workspace/pbuilder/15403/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), dh-linktree, doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, texlive-plain-generic, sphinx-common, d-shlibs
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 17486 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-linktree; however:
  Package dh-linktree is not installed.
 pbuilder-satisfydepends-dummy depends on doxygen; however:
  Package doxygen is not installed.
 pbuilder-satisfydepends-dummy depends on graphviz; however:
  Package graphviz is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
  Package texlive-latex-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
  Package texlive-fonts-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
  Package texlive-latex-extra is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however:
  Package texlive-plain-generic is not installed.
 pbuilder-satisfydepends-dummy depends on sphinx-common; however:
  Package sphinx-common is not installed.
 pbuilder-satisfydepends-dummy depends on d-shlibs; however:
  Package d-shlibs is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-linktree{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp11{a} libclang1-11{a} libcommons-logging-java{a} libcommons-parent-java{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libice6{a} libicu67{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libkpathsea6{a} liblab-gamut1{a} libllvm11{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libptexenc1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsm6{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} preview-latex-style{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sphinx-common{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dvisvgm fonts-liberation javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgts-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl lmodern lynx python3-sphinx ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 137 newly installed, 0 to remove and 0 not upgraded.
Need to get 183 MB of archives. After unpacking 631 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8+deb11u1 [139 kB]
Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB]
Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB]
Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB]
Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB]
Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2+deb11u5 [78.4 kB]
Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB]
Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB]
Get: 11 http://deb.debian.org/debian bullseye/main armhf tzdata all 2021a-1+deb11u10 [286 kB]
Get: 12 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB]
Get: 13 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB]
Get: 14 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB]
Get: 15 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB]
Get: 16 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB]
Get: 17 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get: 18 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get: 19 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get: 20 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB]
Get: 21 http://deb.debian.org/debian bullseye/main armhf tex-common all 6.16 [53.7 kB]
Get: 22 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3+deb11u1 [273 kB]
Get: 23 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3+deb11u1 [120 kB]
Get: 24 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3+deb11u1 [68.2 kB]
Get: 25 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB]
Get: 26 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB]
Get: 27 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB]
Get: 28 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB]
Get: 29 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 30 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB]
Get: 31 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB]
Get: 32 http://deb.debian.org/debian bullseye/main armhf d-shlibs all 0.98 [17.9 kB]
Get: 33 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get: 34 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB]
Get: 35 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 36 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 37 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get: 38 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 39 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 40 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB]
Get: 41 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB]
Get: 42 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB]
Get: 43 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7+deb11u4 [602 kB]
Get: 44 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB]
Get: 45 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 46 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 47 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB]
Get: 48 http://deb.debian.org/debian bullseye/main armhf dh-linktree all 0.8 [11.0 kB]
Get: 49 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB]
Get: 50 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1+deb11u1 [103 kB]
Get: 51 http://deb.debian.org/debian bullseye/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB]
Get: 52 http://deb.debian.org/debian bullseye/main armhf libz3-4 armhf 4.8.10-1 [5959 kB]
Get: 53 http://deb.debian.org/debian bullseye/main armhf libllvm11 armhf 1:11.0.1-2 [15.4 MB]
Get: 54 http://deb.debian.org/debian bullseye/main armhf libclang-cpp11 armhf 1:11.0.1-2 [8197 kB]
Get: 55 http://deb.debian.org/debian bullseye/main armhf libclang1-11 armhf 1:11.0.1-2 [4579 kB]
Get: 56 http://deb.debian.org/debian bullseye/main armhf doxygen armhf 1.9.1-1 [3765 kB]
Get: 57 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB]
Get: 58 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB]
Get: 59 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1+deb11u1 [357 kB]
Get: 60 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get: 61 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get: 62 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB]
Get: 63 http://deb.debian.org/debian bullseye/main armhf fontconfig armhf 2.13.1-4.2 [415 kB]
Get: 64 http://deb.debian.org/debian bullseye/main armhf fonts-lmodern all 2.004.5-6.1 [4540 kB]
Get: 65 http://deb.debian.org/debian bullseye/main armhf libcdt5 armhf 2.42.2-5 [59.7 kB]
Get: 66 http://deb.debian.org/debian bullseye/main armhf libcgraph6 armhf 2.42.2-5 [78.4 kB]
Get: 67 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB]
Get: 68 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB]
Get: 69 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB]
Get: 70 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1+deb11u2 [226 kB]
Get: 71 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1+deb11u4 [272 kB]
Get: 72 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB]
Get: 73 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get: 74 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get: 75 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.2-1+deb11u1 [311 kB]
Get: 76 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.2-1+deb11u1 [711 kB]
Get: 77 http://deb.debian.org/debian bullseye/main armhf libxpm4 armhf 1:3.5.12-1.1~deb11u1 [44.1 kB]
Get: 78 http://deb.debian.org/debian bullseye/main armhf libgd3 armhf 2.3.0-2 [119 kB]
Get: 79 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB]
Get: 80 http://deb.debian.org/debian bullseye/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-4+b1 [138 kB]
Get: 81 http://deb.debian.org/debian bullseye/main armhf libpixman-1-0 armhf 0.40.0-1.1~deb11u1 [466 kB]
Get: 82 http://deb.debian.org/debian bullseye/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get: 83 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get: 84 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get: 85 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get: 86 http://deb.debian.org/debian bullseye/main armhf libcairo2 armhf 1.16.0-5 [615 kB]
Get: 87 http://deb.debian.org/debian bullseye/main armhf libltdl7 armhf 2.4.6-15 [388 kB]
Get: 88 http://deb.debian.org/debian bullseye/main armhf libfribidi0 armhf 1.0.8-2+deb11u1 [63.1 kB]
Get: 89 http://deb.debian.org/debian bullseye/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB]
Get: 90 http://deb.debian.org/debian bullseye/main armhf libharfbuzz0b armhf 2.7.4-1 [1427 kB]
Get: 91 http://deb.debian.org/debian bullseye/main armhf libthai-data all 0.1.28-3 [170 kB]
Get: 92 http://deb.debian.org/debian bullseye/main armhf libdatrie1 armhf 0.2.13-1 [39.4 kB]
Get: 93 http://deb.debian.org/debian bullseye/main armhf libthai0 armhf 0.1.28-3 [50.9 kB]
Get: 94 http://deb.debian.org/debian bullseye/main armhf libpango-1.0-0 armhf 1.46.2-3 [173 kB]
Get: 95 http://deb.debian.org/debian bullseye/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [56.1 kB]
Get: 96 http://deb.debian.org/debian bullseye/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.8 kB]
Get: 97 http://deb.debian.org/debian bullseye/main armhf libpathplan4 armhf 2.42.2-5 [61.9 kB]
Get: 98 http://deb.debian.org/debian bullseye/main armhf libgvc6 armhf 2.42.2-5 [597 kB]
Get: 99 http://deb.debian.org/debian bullseye/main armhf libgvpr2 armhf 2.42.2-5 [185 kB]
Get: 100 http://deb.debian.org/debian bullseye/main armhf liblab-gamut1 armhf 2.42.2-5 [220 kB]
Get: 101 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB]
Get: 102 http://deb.debian.org/debian bullseye/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB]
Get: 103 http://deb.debian.org/debian bullseye/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB]
Get: 104 http://deb.debian.org/debian bullseye/main armhf libxt6 armhf 1:1.2.0-1 [161 kB]
Get: 105 http://deb.debian.org/debian bullseye/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB]
Get: 106 http://deb.debian.org/debian bullseye/main armhf libxaw7 armhf 2:1.0.13-1.1 [167 kB]
Get: 107 http://deb.debian.org/debian bullseye/main armhf graphviz armhf 2.42.2-5 [521 kB]
Get: 108 http://deb.debian.org/debian bullseye/main armhf libapache-pom-java all 18-1 [4676 B]
Get: 109 http://deb.debian.org/debian bullseye/main armhf libcommons-parent-java all 43-1 [10.8 kB]
Get: 110 http://deb.debian.org/debian bullseye/main armhf libcommons-logging-java all 1.2-2 [62.2 kB]
Get: 111 http://deb.debian.org/debian bullseye/main armhf libfontbox-java all 1:1.8.16-2 [211 kB]
Get: 112 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get: 113 http://deb.debian.org/debian bullseye/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB]
Get: 114 http://deb.debian.org/debian bullseye/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB]
Get: 115 http://deb.debian.org/debian bullseye/main armhf libkpathsea6 armhf 2020.20200327.54578-7+deb11u1 [163 kB]
Get: 116 http://deb.debian.org/debian bullseye/main armhf libpaper1 armhf 1.1.28+b1 [20.8 kB]
Get: 117 http://deb.debian.org/debian bullseye/main armhf libpaper-utils armhf 1.1.28+b1 [17.9 kB]
Get: 118 http://deb.debian.org/debian bullseye/main armhf libpdfbox-java all 1:1.8.16-2 [5205 kB]
Get: 119 http://deb.debian.org/debian bullseye/main armhf libptexenc1 armhf 2020.20200327.54578-7+deb11u1 [61.3 kB]
Get: 120 http://deb.debian.org/debian bullseye/main armhf libsynctex2 armhf 2020.20200327.54578-7+deb11u1 [70.4 kB]
Get: 121 http://deb.debian.org/debian bullseye/main armhf libteckit0 armhf 2.5.10+ds1-3 [253 kB]
Get: 122 http://deb.debian.org/debian bullseye/main armhf libtexlua53 armhf 2020.20200327.54578-7+deb11u1 [102 kB]
Get: 123 http://deb.debian.org/debian bullseye/main armhf libtexluajit2 armhf 2020.20200327.54578-7+deb11u1 [205 kB]
Get: 124 http://deb.debian.org/debian bullseye/main armhf libxi6 armhf 2:1.7.10-1 [78.5 kB]
Get: 125 http://deb.debian.org/debian bullseye/main armhf libzzip-0-13 armhf 0.13.62-3.3+deb11u1 [52.0 kB]
Get: 126 http://deb.debian.org/debian bullseye/main armhf preview-latex-style all 12.2-1 [201 kB]
Get: 127 http://deb.debian.org/debian bullseye/main armhf sphinx-common all 3.4.3-2 [578 kB]
Get: 128 http://deb.debian.org/debian bullseye/main armhf t1utils armhf 1.41-4 [54.7 kB]
Get: 129 http://deb.debian.org/debian bullseye/main armhf texlive-binaries armhf 2020.20200327.54578-7+deb11u1 [7620 kB]
Get: 130 http://deb.debian.org/debian bullseye/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 131 http://deb.debian.org/debian bullseye/main armhf texlive-base all 2020.20210202-3 [20.8 MB]
Get: 132 http://deb.debian.org/debian bullseye/main armhf texlive-fonts-recommended all 2020.20210202-3 [5002 kB]
Get: 133 http://deb.debian.org/debian bullseye/main armhf texlive-latex-base all 2020.20210202-3 [1120 kB]
Get: 134 http://deb.debian.org/debian bullseye/main armhf texlive-latex-recommended all 2020.20210202-3 [14.5 MB]
Get: 135 http://deb.debian.org/debian bullseye/main armhf texlive-pictures all 2020.20210202-3 [6743 kB]
Get: 136 http://deb.debian.org/debian bullseye/main armhf texlive-latex-extra all 2020.20210202-3 [13.7 MB]
Get: 137 http://deb.debian.org/debian bullseye/main armhf texlive-plain-generic all 2020.20210202-3 [27.0 MB]
Fetched 183 MB in 4s (45.7 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 17486 files and directories currently installed.)
Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_armhf.deb ...
Unpacking bsdextrautils (2.36.1-8+deb11u1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ...
Unpacking groff-base (1.22.4-6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../4-man-db_2.9.4-2_armhf.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package libpython3.9-minimal:armhf.
Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_armhf.deb ...
Unpacking libpython3.9-minimal:armhf (3.9.2-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_armhf.deb ...
Unpacking libexpat1:armhf (2.2.10-2+deb11u5) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../7-python3.9-minimal_3.9.2-1_armhf.deb ...
Unpacking python3.9-minimal (3.9.2-1) ...
Setting up libpython3.9-minimal:armhf (3.9.2-1) ...
Setting up libexpat1:armhf (2.2.10-2+deb11u5) ...
Setting up python3.9-minimal (3.9.2-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18353 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ...
Unpacking python3-minimal (3.9.2-3) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_4.0.0_all.deb ...
Unpacking media-types (4.0.0) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../2-tzdata_2021a-1+deb11u10_all.deb ...
Unpacking tzdata (2021a-1+deb11u10) ...
Selecting previously unselected package libmpdec3:armhf.
Preparing to unpack .../3-libmpdec3_2.5.1-1_armhf.deb ...
Unpacking libmpdec3:armhf (2.5.1-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../4-readline-common_8.1-1_all.deb ...
Unpacking readline-common (8.1-1) ...
Selecting previously unselected package libreadline8:armhf.
Preparing to unpack .../5-libreadline8_8.1-1_armhf.deb ...
Unpacking libreadline8:armhf (8.1-1) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
Preparing to unpack .../6-libpython3.9-stdlib_3.9.2-1_armhf.deb ...
Unpacking libpython3.9-stdlib:armhf (3.9.2-1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../7-python3.9_3.9.2-1_armhf.deb ...
Unpacking python3.9 (3.9.2-1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../8-libpython3-stdlib_3.9.2-3_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.9.2-3) ...
Setting up python3-minimal (3.9.2-3) ...
Selecting previously unselected package python3.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20636 files and directories currently installed.)
Preparing to unpack .../000-python3_3.9.2-3_armhf.deb ...
Unpacking python3 (3.9.2-3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../001-sensible-utils_0.0.14_all.deb ...
Unpacking sensible-utils (0.0.14) ...
Selecting previously unselected package ucf.
Preparing to unpack .../002-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../003-tex-common_6.16_all.deb ...
Unpacking tex-common (6.16) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../004-libmagic-mgc_1%3a5.39-3+deb11u1_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3+deb11u1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../005-libmagic1_1%3a5.39-3+deb11u1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.39-3+deb11u1) ...
Selecting previously unselected package file.
Preparing to unpack .../006-file_1%3a5.39-3+deb11u1_armhf.deb ...
Unpacking file (1:5.39-3+deb11u1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../007-gettext-base_0.21-4_armhf.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../008-libsigsegv2_2.13-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../009-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../010-autoconf_2.69-14_all.deb ...
Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../011-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../012-automake_1%3a1.16.3-2_all.deb ...
Unpacking automake (1:1.16.3-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../013-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
Selecting previously unselected package d-shlibs.
Preparing to unpack .../014-d-shlibs_0.98_all.deb ...
Unpacking d-shlibs (0.98) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../015-libdebhelper-perl_13.3.4_all.deb ...
Unpacking libdebhelper-perl (13.3.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../016-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../017-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../018-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../019-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../020-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../021-dh-strip-nondeterminism_1.12.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.12.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../022-libelf1_0.183-1_armhf.deb ...
Unpacking libelf1:armhf (0.183-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../023-dwz_0.13+20210201-1_armhf.deb ...
Unpacking dwz (0.13+20210201-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../024-libicu67_67.1-7_armhf.deb ...
Unpacking libicu67:armhf (67.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../025-libxml2_2.9.10+dfsg-6.7+deb11u4_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-6.7+deb11u4) ...
Selecting previously unselected package gettext.
Preparing to unpack .../026-gettext_0.21-4_armhf.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../027-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../028-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../029-debhelper_13.3.4_all.deb ...
Unpacking debhelper (13.3.4) ...
Selecting previously unselected package dh-linktree.
Preparing to unpack .../030-dh-linktree_0.8_all.deb ...
Unpacking dh-linktree (0.8) ...
Selecting previously unselected package libmd0:armhf.
Preparing to unpack .../031-libmd0_1.0.3-3_armhf.deb ...
Unpacking libmd0:armhf (1.0.3-3) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../032-libbsd0_0.11.3-1+deb11u1_armhf.deb ...
Unpacking libbsd0:armhf (0.11.3-1+deb11u1) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../033-libedit2_3.1-20191231-2+b1_armhf.deb ...
Unpacking libedit2:armhf (3.1-20191231-2+b1) ...
Selecting previously unselected package libz3-4:armhf.
Preparing to unpack .../034-libz3-4_4.8.10-1_armhf.deb ...
Unpacking libz3-4:armhf (4.8.10-1) ...
Selecting previously unselected package libllvm11:armhf.
Preparing to unpack .../035-libllvm11_1%3a11.0.1-2_armhf.deb ...
Unpacking libllvm11:armhf (1:11.0.1-2) ...
Selecting previously unselected package libclang-cpp11.
Preparing to unpack .../036-libclang-cpp11_1%3a11.0.1-2_armhf.deb ...
Unpacking libclang-cpp11 (1:11.0.1-2) ...
Selecting previously unselected package libclang1-11.
Preparing to unpack .../037-libclang1-11_1%3a11.0.1-2_armhf.deb ...
Unpacking libclang1-11 (1:11.0.1-2) ...
Selecting previously unselected package doxygen.
Preparing to unpack .../038-doxygen_1.9.1-1_armhf.deb ...
Unpacking doxygen (1.9.1-1) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../039-libbrotli1_1.0.9-2+b2_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b2) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../040-libpng16-16_1.6.37-3_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.37-3) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../041-libfreetype6_2.10.4+dfsg-1+deb11u1_armhf.deb ...
Unpacking libfreetype6:armhf (2.10.4+dfsg-1+deb11u1) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../042-fonts-dejavu-core_2.37-2_all.deb ...
Unpacking fonts-dejavu-core (2.37-2) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../043-fontconfig-config_2.13.1-4.2_all.deb ...
Unpacking fontconfig-config (2.13.1-4.2) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../044-libfontconfig1_2.13.1-4.2_armhf.deb ...
Unpacking libfontconfig1:armhf (2.13.1-4.2) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../045-fontconfig_2.13.1-4.2_armhf.deb ...
Unpacking fontconfig (2.13.1-4.2) ...
Selecting previously unselected package fonts-lmodern.
Preparing to unpack .../046-fonts-lmodern_2.004.5-6.1_all.deb ...
Unpacking fonts-lmodern (2.004.5-6.1) ...
Selecting previously unselected package libcdt5:armhf.
Preparing to unpack .../047-libcdt5_2.42.2-5_armhf.deb ...
Unpacking libcdt5:armhf (2.42.2-5) ...
Selecting previously unselected package libcgraph6:armhf.
Preparing to unpack .../048-libcgraph6_2.42.2-5_armhf.deb ...
Unpacking libcgraph6:armhf (2.42.2-5) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../049-libjpeg62-turbo_1%3a2.0.6-4_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.0.6-4) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../050-libdeflate0_1.7-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.7-1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../051-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libwebp6:armhf.
Preparing to unpack .../052-libwebp6_0.6.1-2.1+deb11u2_armhf.deb ...
Unpacking libwebp6:armhf (0.6.1-2.1+deb11u2) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../053-libtiff5_4.2.0-1+deb11u4_armhf.deb ...
Unpacking libtiff5:armhf (4.2.0-1+deb11u4) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../054-libxau6_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.9-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../055-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../056-libxcb1_1.14-3_armhf.deb ...
Unpacking libxcb1:armhf (1.14-3) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../057-libx11-data_2%3a1.7.2-1+deb11u1_all.deb ...
Unpacking libx11-data (2:1.7.2-1+deb11u1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../058-libx11-6_2%3a1.7.2-1+deb11u1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.7.2-1+deb11u1) ...
Selecting previously unselected package libxpm4:armhf.
Preparing to unpack .../059-libxpm4_1%3a3.5.12-1.1~deb11u1_armhf.deb ...
Unpacking libxpm4:armhf (1:3.5.12-1.1~deb11u1) ...
Selecting previously unselected package libgd3:armhf.
Preparing to unpack .../060-libgd3_2.3.0-2_armhf.deb ...
Unpacking libgd3:armhf (2.3.0-2) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../061-libglib2.0-0_2.66.8-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.66.8-1) ...
Selecting previously unselected package libgts-0.7-5:armhf.
Preparing to unpack .../062-libgts-0.7-5_0.7.6+darcs121130-4+b1_armhf.deb ...
Unpacking libgts-0.7-5:armhf (0.7.6+darcs121130-4+b1) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../063-libpixman-1-0_0.40.0-1.1~deb11u1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.40.0-1.1~deb11u1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../064-libxcb-render0_1.14-3_armhf.deb ...
Unpacking libxcb-render0:armhf (1.14-3) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../065-libxcb-shm0_1.14-3_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.14-3) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../066-libxext6_2%3a1.3.3-1.1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1.1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../067-libxrender1_1%3a0.9.10-1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../068-libcairo2_1.16.0-5_armhf.deb ...
Unpacking libcairo2:armhf (1.16.0-5) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../069-libltdl7_2.4.6-15_armhf.deb ...
Unpacking libltdl7:armhf (2.4.6-15) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../070-libfribidi0_1.0.8-2+deb11u1_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.8-2+deb11u1) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../071-libgraphite2-3_1.3.14-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.14-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../072-libharfbuzz0b_2.7.4-1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (2.7.4-1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../073-libthai-data_0.1.28-3_all.deb ...
Unpacking libthai-data (0.1.28-3) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../074-libdatrie1_0.2.13-1_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.13-1) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../075-libthai0_0.1.28-3_armhf.deb ...
Unpacking libthai0:armhf (0.1.28-3) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../076-libpango-1.0-0_1.46.2-3_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.46.2-3) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../077-libpangoft2-1.0-0_1.46.2-3_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.46.2-3) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../078-libpangocairo-1.0-0_1.46.2-3_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.46.2-3) ...
Selecting previously unselected package libpathplan4:armhf.
Preparing to unpack .../079-libpathplan4_2.42.2-5_armhf.deb ...
Unpacking libpathplan4:armhf (2.42.2-5) ...
Selecting previously unselected package libgvc6.
Preparing to unpack .../080-libgvc6_2.42.2-5_armhf.deb ...
Unpacking libgvc6 (2.42.2-5) ...
Selecting previously unselected package libgvpr2:armhf.
Preparing to unpack .../081-libgvpr2_2.42.2-5_armhf.deb ...
Unpacking libgvpr2:armhf (2.42.2-5) ...
Selecting previously unselected package liblab-gamut1:armhf.
Preparing to unpack .../082-liblab-gamut1_2.42.2-5_armhf.deb ...
Unpacking liblab-gamut1:armhf (2.42.2-5) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../083-x11-common_1%3a7.7+22_all.deb ...
Unpacking x11-common (1:7.7+22) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../084-libice6_2%3a1.0.10-1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.10-1) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../085-libsm6_2%3a1.2.3-1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.3-1) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../086-libxt6_1%3a1.2.0-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.2.0-1) ...
Selecting previously unselected package libxmu6:armhf.
Preparing to unpack .../087-libxmu6_2%3a1.1.2-2+b3_armhf.deb ...
Unpacking libxmu6:armhf (2:1.1.2-2+b3) ...
Selecting previously unselected package libxaw7:armhf.
Preparing to unpack .../088-libxaw7_2%3a1.0.13-1.1_armhf.deb ...
Unpacking libxaw7:armhf (2:1.0.13-1.1) ...
Selecting previously unselected package graphviz.
Preparing to unpack .../089-graphviz_2.42.2-5_armhf.deb ...
Unpacking graphviz (2.42.2-5) ...
Selecting previously unselected package libapache-pom-java.
Preparing to unpack .../090-libapache-pom-java_18-1_all.deb ...
Unpacking libapache-pom-java (18-1) ...
Selecting previously unselected package libcommons-parent-java.
Preparing to unpack .../091-libcommons-parent-java_43-1_all.deb ...
Unpacking libcommons-parent-java (43-1) ...
Selecting previously unselected package libcommons-logging-java.
Preparing to unpack .../092-libcommons-logging-java_1.2-2_all.deb ...
Unpacking libcommons-logging-java (1.2-2) ...
Selecting previously unselected package libfontbox-java.
Preparing to unpack .../093-libfontbox-java_1%3a1.8.16-2_all.deb ...
Unpacking libfontbox-java (1:1.8.16-2) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../094-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ...
Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../095-libjs-underscore_1.9.1~dfsg-3_all.deb ...
Unpacking libjs-underscore (1.9.1~dfsg-3) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../096-libjs-sphinxdoc_3.4.3-2_all.deb ...
Unpacking libjs-sphinxdoc (3.4.3-2) ...
Selecting previously unselected package libkpathsea6:armhf.
Preparing to unpack .../097-libkpathsea6_2020.20200327.54578-7+deb11u1_armhf.deb ...
Unpacking libkpathsea6:armhf (2020.20200327.54578-7+deb11u1) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../098-libpaper1_1.1.28+b1_armhf.deb ...
Unpacking libpaper1:armhf (1.1.28+b1) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../099-libpaper-utils_1.1.28+b1_armhf.deb ...
Unpacking libpaper-utils (1.1.28+b1) ...
Selecting previously unselected package libpdfbox-java.
Preparing to unpack .../100-libpdfbox-java_1%3a1.8.16-2_all.deb ...
Unpacking libpdfbox-java (1:1.8.16-2) ...
Selecting previously unselected package libptexenc1:armhf.
Preparing to unpack .../101-libptexenc1_2020.20200327.54578-7+deb11u1_armhf.deb ...
Unpacking libptexenc1:armhf (2020.20200327.54578-7+deb11u1) ...
Selecting previously unselected package libsynctex2:armhf.
Preparing to unpack .../102-libsynctex2_2020.20200327.54578-7+deb11u1_armhf.deb ...
Unpacking libsynctex2:armhf (2020.20200327.54578-7+deb11u1) ...
Selecting previously unselected package libteckit0:armhf.
Preparing to unpack .../103-libteckit0_2.5.10+ds1-3_armhf.deb ...
Unpacking libteckit0:armhf (2.5.10+ds1-3) ...
Selecting previously unselected package libtexlua53:armhf.
Preparing to unpack .../104-libtexlua53_2020.20200327.54578-7+deb11u1_armhf.deb ...
Unpacking libtexlua53:armhf (2020.20200327.54578-7+deb11u1) ...
Selecting previously unselected package libtexluajit2:armhf.
Preparing to unpack .../105-libtexluajit2_2020.20200327.54578-7+deb11u1_armhf.deb ...
Unpacking libtexluajit2:armhf (2020.20200327.54578-7+deb11u1) ...
Selecting previously unselected package libxi6:armhf.
Preparing to unpack .../106-libxi6_2%3a1.7.10-1_armhf.deb ...
Unpacking libxi6:armhf (2:1.7.10-1) ...
Selecting previously unselected package libzzip-0-13:armhf.
Preparing to unpack .../107-libzzip-0-13_0.13.62-3.3+deb11u1_armhf.deb ...
Unpacking libzzip-0-13:armhf (0.13.62-3.3+deb11u1) ...
Selecting previously unselected package preview-latex-style.
Preparing to unpack .../108-preview-latex-style_12.2-1_all.deb ...
Unpacking preview-latex-style (12.2-1) ...
Selecting previously unselected package sphinx-common.
Preparing to unpack .../109-sphinx-common_3.4.3-2_all.deb ...
Unpacking sphinx-common (3.4.3-2) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../110-t1utils_1.41-4_armhf.deb ...
Unpacking t1utils (1.41-4) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../111-texlive-binaries_2020.20200327.54578-7+deb11u1_armhf.deb ...
Unpacking texlive-binaries (2020.20200327.54578-7+deb11u1) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../112-xdg-utils_1.1.3-4.1_all.deb ...
Unpacking xdg-utils (1.1.3-4.1) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../113-texlive-base_2020.20210202-3_all.deb ...
Unpacking texlive-base (2020.20210202-3) ...
Selecting previously unselected package texlive-fonts-recommended.
Preparing to unpack .../114-texlive-fonts-recommended_2020.20210202-3_all.deb ...
Unpacking texlive-fonts-recommended (2020.20210202-3) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../115-texlive-latex-base_2020.20210202-3_all.deb ...
Unpacking texlive-latex-base (2020.20210202-3) ...
Selecting previously unselected package texlive-latex-recommended.
Preparing to unpack .../116-texlive-latex-recommended_2020.20210202-3_all.deb ...
Unpacking texlive-latex-recommended (2020.20210202-3) ...
Selecting previously unselected package texlive-pictures.
Preparing to unpack .../117-texlive-pictures_2020.20210202-3_all.deb ...
Unpacking texlive-pictures (2020.20210202-3) ...
Selecting previously unselected package texlive-latex-extra.
Preparing to unpack .../118-texlive-latex-extra_2020.20210202-3_all.deb ...
Unpacking texlive-latex-extra (2020.20210202-3) ...
Selecting previously unselected package texlive-plain-generic.
Preparing to unpack .../119-texlive-plain-generic_2020.20210202-3_all.deb ...
Unpacking texlive-plain-generic (2020.20210202-3) ...
Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.40.0-1.1~deb11u1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up bsdextrautils (2.36.1-8+deb11u1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libdatrie1:armhf (0.2.13-1) ...
Setting up libmagic-mgc (1:5.39-3+deb11u1) ...
Setting up libtexlua53:armhf (2020.20200327.54578-7+deb11u1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.8-1) ...
No schema files found: doing nothing.
Setting up libtexluajit2:armhf (2020.20200327.54578-7+deb11u1) ...
Setting up libdebhelper-perl (13.3.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up libfontbox-java (1:1.8.16-2) ...
Setting up liblab-gamut1:armhf (2.42.2-5) ...
Setting up x11-common (1:7.7+22) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libmagic1:armhf (1:5.39-3+deb11u1) ...
Setting up libdeflate0:armhf (1.7-1) ...
Setting up gettext-base (0.21-4) ...
Setting up libzzip-0-13:armhf (0.13.62-3.3+deb11u1) ...
Setting up file (1:5.39-3+deb11u1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up tzdata (2021a-1+deb11u10) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Sun Jan  7 02:30:03 UTC 2024.
Universal Time is now:  Sun Jan  7 02:30:03 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up libgts-0.7-5:armhf (0.7.6+darcs121130-4+b1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libz3-4:armhf (4.8.10-1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ...
Setting up libx11-data (2:1.7.2-1+deb11u1) ...
Setting up libteckit0:armhf (2.5.10+ds1-3) ...
Setting up libpathplan4:armhf (2.42.2-5) ...
Setting up libapache-pom-java (18-1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libfribidi0:armhf (1.0.8-2+deb11u1) ...
Setting up t1utils (1.41-4) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up autopoint (0.21-4) ...
Setting up libwebp6:armhf (0.6.1-2.1+deb11u2) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up d-shlibs (0.98) ...
Setting up libltdl7:armhf (2.4.6-15) ...
Setting up libkpathsea6:armhf (2020.20200327.54578-7+deb11u1) ...
Setting up libmd0:armhf (1.0.3-3) ...
Setting up sensible-utils (0.0.14) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-1) ...
Setting up fonts-lmodern (2.004.5-6.1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-3) ...
Setting up libcdt5:armhf (2.42.2-5) ...
Setting up libcgraph6:armhf (2.42.2-5) ...
Setting up libtiff5:armhf (4.2.0-1+deb11u4) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up libbsd0:armhf (0.11.3-1+deb11u1) ...
Setting up libelf1:armhf (0.183-1) ...
Setting up readline-common (8.1-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.7+deb11u4) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libsynctex2:armhf (2020.20200327.54578-7+deb11u1) ...
Setting up libjs-underscore (1.9.1~dfsg-3) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libpdfbox-java (1:1.8.16-2) ...
Setting up libtool (2.4.6-15) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libedit2:armhf (3.1-20191231-2+b1) ...
Setting up libreadline8:armhf (8.1-1) ...
Setting up libcommons-parent-java (43-1) ...
Setting up libcommons-logging-java (1.2-2) ...
Setting up m4 (1.4.18-5) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up libllvm11:armhf (1:11.0.1-2) ...
Setting up libptexenc1:armhf (2020.20200327.54578-7+deb11u1) ...
Setting up libfreetype6:armhf (2.10.4+dfsg-1+deb11u1) ...
Setting up libclang1-11 (1:11.0.1-2) ...
Setting up ucf (3.0043) ...
Setting up libjs-sphinxdoc (3.4.3-2) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up libgvpr2:armhf (2.42.2-5) ...
Setting up dwz (0.13+20210201-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up libx11-6:armhf (2:1.7.2-1+deb11u1) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libpython3.9-stdlib:armhf (3.9.2-1) ...
Setting up libpython3-stdlib:armhf (3.9.2-3) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28+b1) ...

Creating config file /etc/papersize with new version
Setting up libxpm4:armhf (1:3.5.12-1.1~deb11u1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.3-1.1) ...
Setting up libpaper-utils (1.1.28+b1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libclang-cpp11 (1:11.0.1-2) ...
Setting up dh-autoreconf (20) ...
Setting up tex-common (6.16) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up doxygen (1.9.1-1) ...
Setting up sphinx-common (3.4.3-2) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up python3.9 (3.9.2-1) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxmu6:armhf (2:1.1.2-2+b3) ...
Setting up libxi6:armhf (2:1.7.10-1) ...
Setting up preview-latex-style (12.2-1) ...
Setting up libpango-1.0-0:armhf (1.46.2-3) ...
Setting up debhelper (13.3.4) ...
Setting up python3 (3.9.2-3) ...
Setting up libxaw7:armhf (2:1.0.13-1.1) ...
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libgd3:armhf (2.3.0-2) ...
Setting up texlive-binaries (2020.20200327.54578-7+deb11u1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libpangoft2-1.0-0:armhf (1.46.2-3) ...
Setting up texlive-base (2020.20210202-3) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libpangocairo-1.0-0:armhf (1.46.2-3) ...
Setting up dh-linktree (0.8) ...
Setting up texlive-plain-generic (2020.20210202-3) ...
Setting up texlive-latex-base (2020.20210202-3) ...
Setting up texlive-latex-recommended (2020.20210202-3) ...
Setting up libgvc6 (2.42.2-5) ...
Setting up texlive-pictures (2020.20210202-3) ...
Setting up texlive-fonts-recommended (2020.20210202-3) ...
Setting up graphviz (2.42.2-5) ...
Setting up texlive-latex-extra (2020.20210202-3) ...
Processing triggers for libc-bin (2.31-13+deb11u6) ...
Processing triggers for tex-common (6.16) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/librostlab-1.0.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../librostlab_1.0.20-10_source.changes
dpkg-buildpackage: info: source package librostlab
dpkg-buildpackage: info: source version 1.0.20-10
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with linktree
   dh_clean
 debian/rules binary
dh binary --with linktree
   dh_update_autotools_config
   dh_autoreconf
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from...
m4/libtool.m4:785: _LT_LANG is expanded from...
m4/libtool.m4:768: LT_LANG is expanded from...
m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from...
m4/libtool.m4:785: _LT_LANG is expanded from...
m4/libtool.m4:768: LT_LANG is expanded from...
m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from...
m4/libtool.m4:785: _LT_LANG is expanded from...
m4/libtool.m4:768: LT_LANG is expanded from...
m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:7: installing './compile'
configure.ac:5: installing './missing'
lib/Makefile.am: installing './depcomp'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for doxygen... /usr/bin/doxygen
checking for perl... /usr/bin/perl
checking for dot... /usr/bin/dot
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for egrep... /bin/egrep
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating lib/Doxyfile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
   debian/rules override_dh_auto_build-indep
make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
/usr/bin/make -C lib doxygen-doc
make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib'
rm -rf ../doxygen-doc
SRCDIR='.' PROJECT='librostlab' DOCDIR='../doxygen-doc' VERSION='1.0.20' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile
warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'COLS_IN_ALPHA_INDEX' at line 761 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'HTML_ALIGN_MEMBERS' at line 847 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'USE_INLINE_TREES' at line 1032 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'XML_SCHEMA' at line 1257 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'XML_DTD' at line 1263 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'PERL_PATH' at line 1428 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 1450 of file './Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
Using the default: a4!
warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.
Doxygen version used: 1.9.1
Notice: Output directory '../doxygen-doc' does not exist. I have created it for you.
Searching for include files...
Searching for example files...
Searching for images...
Searching for dot files...
Searching for msc files...
Searching for dia files...
Searching for files to exclude
Searching INPUT for files to process...
Searching for files in directory /build/reproducible-path/librostlab-1.0.20/lib/rostlab
Reading and parsing tag files
Parsing files
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h...
Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h...
Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Computing nesting relations for classes...
Associating documentation with classes...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file rostlab/aux_functions.h...
Generating code for file rostlab/blosum62.h...
Generating code for file rostlab/cwd_resource.h...
Generating code for file rostlab/cxxgrp.h...
Generating code for file rostlab/cxxpwd.h...
Generating code for file rostlab/euid_egid_resource.h...
Generating code for file rostlab/file_lock_resource.h...
Generating code for file rostlab/mapAA2int.h...
Generating code for file rostlab/readFasta.h...
Generating code for file rostlab/rostlab_stdexcept.h...
Generating code for file rostlab/rostlab_stdio.h...
Generating code for file rostlab/rostlab_stdlib.h...
Generating code for file rostlab/umask_resource.h...
Generating file documentation...
Generating docs for file rostlab/aux_functions.h...
Generating docs for file rostlab/blosum62.h...
Generating docs for file rostlab/cwd_resource.h...
Generating docs for file rostlab/cxxgrp.h...
Generating docs for file rostlab/cxxpwd.h...
Generating docs for file rostlab/euid_egid_resource.h...
Generating docs for file rostlab/file_lock_resource.h...
Generating docs for file rostlab/mapAA2int.h...
Generating docs for file rostlab/readFasta.h...
Generating docs for file rostlab/rostlab_stdexcept.h...
Generating docs for file rostlab/rostlab_stdio.h...
Generating docs for file rostlab/rostlab_stdlib.h...
Generating docs for file rostlab/umask_resource.h...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating namespace index...
Generating docs for namespace rostlab
Generating docs for compound rostlab::cwd_resource...
Generating docs for compound rostlab::cxx_group...
Generating docs for compound rostlab::gid_not_found_error...
Generating docs for compound rostlab::gname_not_found_error...
Generating docs for compound rostlab::cxx_passwd...
Generating docs for compound rostlab::uid_not_found_error...
Generating docs for compound rostlab::uname_not_found_error...
Generating docs for compound rostlab::euid_egid_resource...
Generating docs for compound rostlab::file_lock_resource...
Generating docs for nested compound rostlab::file_lock_resource::wouldblock...
Generating docs for compound rostlab::error_backtracer...
Generating docs for compound rostlab::exception...
Generating docs for compound rostlab::runtime_error...
Generating docs for compound rostlab::umask_resource...
Generating docs for namespace rostlab::bio
Generating docs for compound rostlab::bio::seq...
Generating docs for namespace rostlab::bio::fmt
Generating docs for compound rostlab::bio::fmt::fasta...
Generating graph info page...
Generating directory documentation...
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating graphical class hierarchy...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
writing tag file...
Running plantuml with JAVA...
Running dot...
Generating dot graphs using 5 parallel threads...
Running dot for graph 1/66
Running dot for graph 2/66
Running dot for graph 3/66
Running dot for graph 4/66
Running dot for graph 5/66
Running dot for graph 6/66
Running dot for graph 7/66
Running dot for graph 8/66
Running dot for graph 9/66
Running dot for graph 10/66
Running dot for graph 11/66
Running dot for graph 12/66
Running dot for graph 13/66
Running dot for graph 14/66
Running dot for graph 15/66
Running dot for graph 16/66
Running dot for graph 17/66
Running dot for graph 18/66
Running dot for graph 19/66
Running dot for graph 20/66
Running dot for graph 21/66
Running dot for graph 22/66
Running dot for graph 23/66
Running dot for graph 24/66
Running dot for graph 25/66
Running dot for graph 26/66
Running dot for graph 27/66
Running dot for graph 28/66
Running dot for graph 29/66
Running dot for graph 30/66
Running dot for graph 31/66
Running dot for graph 32/66
Running dot for graph 33/66
Running dot for graph 34/66
Running dot for graph 35/66
Running dot for graph 36/66
Running dot for graph 37/66
Running dot for graph 38/66
Running dot for graph 39/66
Running dot for graph 40/66
Running dot for graph 41/66
Running dot for graph 42/66
Running dot for graph 43/66
Running dot for graph 44/66
Running dot for graph 45/66
Running dot for graph 46/66
Running dot for graph 47/66
Running dot for graph 48/66
Running dot for graph 49/66
Running dot for graph 50/66
Running dot for graph 51/66
Running dot for graph 52/66
Running dot for graph 53/66
Running dot for graph 54/66
Running dot for graph 55/66
Running dot for graph 56/66
Running dot for graph 57/66
Running dot for graph 58/66
Running dot for graph 59/66
Running dot for graph 60/66
Running dot for graph 61/66
Running dot for graph 62/66
Running dot for graph 63/66
Running dot for graph 64/66
Running dot for graph 65/66
Running dot for graph 66/66
Patching output file 1/41
Patching output file 2/41
Patching output file 3/41
Patching output file 4/41
Patching output file 5/41
Patching output file 6/41
Patching output file 7/41
Patching output file 8/41
Patching output file 9/41
Patching output file 10/41
Patching output file 11/41
Patching output file 12/41
Patching output file 13/41
Patching output file 14/41
Patching output file 15/41
Patching output file 16/41
Patching output file 17/41
Patching output file 18/41
Patching output file 19/41
Patching output file 20/41
Patching output file 21/41
Patching output file 22/41
Patching output file 23/41
Patching output file 24/41
Patching output file 25/41
Patching output file 26/41
Patching output file 27/41
Patching output file 28/41
Patching output file 29/41
Patching output file 30/41
Patching output file 31/41
Patching output file 32/41
Patching output file 33/41
Patching output file 34/41
Patching output file 35/41
Patching output file 36/41
Patching output file 37/41
Patching output file 38/41
Patching output file 39/41
Patching output file 40/41
Patching output file 41/41
lookup cache used 177/65536 hits=508 misses=191
finished...
cd ../doxygen-doc/latex; \
rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \
/usr/bin/pdflatex refman.tex; \
/usr/bin/makeindex refman.idx; \
/usr/bin/pdflatex refman.tex; \
countdown=5; \
while /bin/egrep 'Rerun (LaTeX|to get cross-references right)' \
                  refman.log > /dev/null 2>&1 \
   && test $countdown -gt 0; do \
    /usr/bin/pdflatex refman.tex; \
    countdown=`expr $countdown - 1`; \
done; \
mv refman.pdf ../librostlab.pdf
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-01-09> xparse <2020-03-03>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty

Package fixltx2e Warning: fixltx2e is not required with releases after 2015
(fixltx2e)                All fixes are now in the LaTeX kernel.
(fixltx2e)                See the latexrelease package for details.

) (./doxygen.sty (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty))
(./longtable_doxygen.sty) (./tabu_doxygen.sty
(/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hanging/hanging.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjustbox.sty
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/trimclip.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/collectbox/collectbox.sty)
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/tc-pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/latex/stackengine/stackengine.sty
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/listofitems/listofitems.sty
(/usr/share/texlive/texmf-dist/tex/generic/listofitems/listofitems.tex)))
(/usr/share/texlive/texmf-dist/tex/generic/ulem/ulem.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/wasysym/wasysym.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/helvet.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/courier.sty)
(/usr/share/texlive/texmf-dist/tex/latex/sectsty/sectsty.sty

LaTeX Warning: Command \underbar  has changed.
               Check if current package is valid.


LaTeX Warning: Command \underline  has changed.
               Check if current package is valid.

) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
(/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tocloft/tocloft.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/newunicodechar/newunicodechar.sty)

Package newunicodechar Warning: Redefining Unicode character on input line 115.



Package newunicodechar Warning: Redefining Unicode character on input line 116.


(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
(/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
(/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/backref.sty
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty)
(/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty))
(/usr/share/texlive/texmf-dist/tex/latex/etoc/etoc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
No file refman.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
No file refman.toc.
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [2]
Chapter 1.
(./namespaces.tex

LaTeX Warning: Reference `namespacerostlab' on page 1 undefined on input line 3
.


LaTeX Warning: Reference `namespacerostlab_1_1bio' on page 1 undefined on input
 line 4.


LaTeX Warning: Reference `namespacerostlab_1_1bio_1_1fmt' on page 1 undefined o
n input line 5.

) [1] [2]
Chapter 2.
(./hierarchy.tex

LaTeX Warning: Reference `classrostlab_1_1cwd__resource' on page 3 undefined on
 input line 3.


LaTeX Warning: Reference `structrostlab_1_1cxx__group' on page 3 undefined on i
nput line 4.


LaTeX Warning: Reference `structrostlab_1_1cxx__passwd' on page 3 undefined on 
input line 5.


LaTeX Warning: Reference `classrostlab_1_1error__backtracer' on page 3 undefine
d on input line 6.


LaTeX Warning: Reference `classrostlab_1_1exception' on page 3 undefined on inp
ut line 8.


LaTeX Warning: Reference `classrostlab_1_1file__lock__resource_1_1wouldblock' o
n page 3 undefined on input line 10.


LaTeX Warning: Reference `classrostlab_1_1runtime__error' on page 3 undefined o
n input line 12.


LaTeX Warning: Reference `classrostlab_1_1gid__not__found__error' on page 3 und
efined on input line 14.


LaTeX Warning: Reference `classrostlab_1_1gname__not__found__error' on page 3 u
ndefined on input line 15.


LaTeX Warning: Reference `classrostlab_1_1uid__not__found__error' on page 3 und
efined on input line 16.


LaTeX Warning: Reference `classrostlab_1_1uname__not__found__error' on page 3 u
ndefined on input line 17.


LaTeX Warning: Reference `classrostlab_1_1euid__egid__resource' on page 3 undef
ined on input line 20.


LaTeX Warning: Reference `classrostlab_1_1exception' on page 3 undefined on inp
ut line 22.


LaTeX Warning: Reference `classrostlab_1_1bio_1_1fmt_1_1fasta' on page 3 undefi
ned on input line 24.


LaTeX Warning: Reference `classrostlab_1_1file__lock__resource' on page 3 undef
ined on input line 25.


LaTeX Warning: Reference `classrostlab_1_1runtime__error' on page 3 undefined o
n input line 27.


LaTeX Warning: Reference `classrostlab_1_1bio_1_1seq' on page 3 undefined on in
put line 29.


LaTeX Warning: Reference `classrostlab_1_1umask__resource' on page 3 undefined 
on input line 30.

) [3] [4]
Chapter 3.
(./annotated.tex

LaTeX Warning: Reference `classrostlab_1_1cwd__resource' on page 5 undefined on
 input line 3.


LaTeX Warning: Reference `structrostlab_1_1cxx__group' on page 5 undefined on i
nput line 4.


LaTeX Warning: Reference `structrostlab_1_1cxx__passwd' on page 5 undefined on 
input line 5.


LaTeX Warning: Reference `classrostlab_1_1error__backtracer' on page 5 undefine
d on input line 6.


LaTeX Warning: Reference `classrostlab_1_1euid__egid__resource' on page 5 undef
ined on input line 7.


LaTeX Warning: Reference `classrostlab_1_1exception' on page 5 undefined on inp
ut line 8.


LaTeX Warning: Reference `classrostlab_1_1bio_1_1fmt_1_1fasta' on page 5 undefi
ned on input line 9.


LaTeX Warning: Reference `classrostlab_1_1file__lock__resource' on page 5 undef
ined on input line 10.


LaTeX Warning: Reference `classrostlab_1_1gid__not__found__error' on page 5 und
efined on input line 11.


LaTeX Warning: Reference `classrostlab_1_1gname__not__found__error' on page 5 u
ndefined on input line 12.


LaTeX Warning: Reference `classrostlab_1_1runtime__error' on page 5 undefined o
n input line 13.


LaTeX Warning: Reference `classrostlab_1_1bio_1_1seq' on page 5 undefined on in
put line 14.


LaTeX Warning: Reference `classrostlab_1_1uid__not__found__error' on page 5 und
efined on input line 15.


LaTeX Warning: Reference `classrostlab_1_1umask__resource' on page 5 undefined 
on input line 16.


LaTeX Warning: Reference `classrostlab_1_1uname__not__found__error' on page 5 u
ndefined on input line 17.


LaTeX Warning: Reference `classrostlab_1_1file__lock__resource_1_1wouldblock' o
n page 5 undefined on input line 18.

) [5] [6]
Chapter 4.
(./files.tex

LaTeX Warning: Reference `aux__functions_8h' on page 7 undefined on input line 
3.


LaTeX Warning: Reference `blosum62_8h' on page 7 undefined on input line 4.


LaTeX Warning: Reference `cwd__resource_8h' on page 7 undefined on input line 5
.


LaTeX Warning: Reference `cxxgrp_8h' on page 7 undefined on input line 6.


LaTeX Warning: Reference `cxxpwd_8h' on page 7 undefined on input line 7.


LaTeX Warning: Reference `euid__egid__resource_8h' on page 7 undefined on input
 line 8.


LaTeX Warning: Reference `file__lock__resource_8h' on page 7 undefined on input
 line 9.


LaTeX Warning: Reference `mapAA2int_8h' on page 7 undefined on input line 10.


LaTeX Warning: Reference `readFasta_8h' on page 7 undefined on input line 11.


LaTeX Warning: Reference `rostlab__stdexcept_8h' on page 7 undefined on input l
ine 12.


LaTeX Warning: Reference `rostlab__stdio_8h' on page 7 undefined on input line 
13.


LaTeX Warning: Reference `rostlab__stdlib_8h' on page 7 undefined on input line
 14.


LaTeX Warning: Reference `umask__resource_8h' on page 7 undefined on input line
 15.

) [7] [8]
Chapter 5.
(./namespacerostlab.tex
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10]
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [11] [12] [13]
[14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex)
(./namespacerostlab_1_1bio_1_1fmt.tex) [18]
Chapter 6.
(./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex
[20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23])
(./classrostlab_1_1error__backtracer.tex [24] <./classrostlab_1_1error__backtra
cer__inherit__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1error__backtracer__in
herit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a s
ingle page
> [25]) (./classrostlab_1_1euid__egid__resource.tex [26])
(./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p
df

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__inherit__g
raph.pdf): PDF inclusion: multiple pdfs with page group included in a single pa
ge
> <./classrostlab_1_1exception__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__coll__grap
h.pdf): PDF inclusion: multiple pdfs with page group included in a single page
> [27]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex)
(./classrostlab_1_1file__lock__resource.tex [28] [29] [30])
(./classrostlab_1_1gid__not__found__error.tex <./classrostlab_1_1gid__not__foun
d__error__inherit__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro
r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i
n a single page
> [31] <./classrostlab_1_1gid__not__found__error__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro
r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a
 single page
> [32]) (./classrostlab_1_1gname__not__found__error.tex <./classrostlab_1_1gnam
e__not__found__error__inherit__graph.pdf> <./classrostlab_1_1gname__not__found_
_error__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gname__not__found__er
ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in
 a single page
> [33]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error
__inherit__graph.pdf> [34] <./classrostlab_1_1runtime__error__coll__graph.pdf>
[35]) (./classrostlab_1_1bio_1_1seq.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.

[36]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not
__found__error__inherit__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro
r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i
n a single page
> <./classrostlab_1_1uid__not__found__error__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro
r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a
 single page
> [37] [38]) (./classrostlab_1_1umask__resource.tex)
(./classrostlab_1_1uname__not__found__error.tex <./classrostlab_1_1uname__not__
found__error__inherit__graph.pdf> [39] <./classrostlab_1_1uname__not__found__er
ror__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er
ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in
 a single page
> [40]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostl
ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1
_1file__lock__resource_1_1wouldblock__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1file__lock__resource_
1_1wouldblock__coll__graph.pdf): PDF inclusion: multiple pdfs with page group i
ncluded in a single page
> [41]) [42]
Chapter 7.
(./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [43])
(./blosum62_8h.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pdf>
[44]) (./cxxgrp_8h.tex <./cxxgrp_8h__incl.pdf>) (./cxxpwd_8h.tex <./cxxpwd_8h__
incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./cxxpwd_8h__incl.pdf): PDF inclusion: 
multiple pdfs with page group included in a single page
> [45]) (./euid__egid__resource_8h.tex <./euid__egid__resource_8h__incl.pdf>
[46]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf>)
(./mapAA2int_8h.tex <./mapAA2int_8h__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./mapAA2int_8h__incl.pdf): PDF inclusio
n: multiple pdfs with page group included in a single page
> [47]) (./readFasta_8h.tex <./readFasta_8h__incl.pdf> [48])
(./rostlab__stdexcept_8h.tex <./rostlab__stdexcept_8h__incl.pdf> <./rostlab__st
dexcept_8h__dep__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__dep__incl.pdf)
: PDF inclusion: multiple pdfs with page group included in a single page
>) (./rostlab__stdio_8h.tex <./rostlab__stdio_8h__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdio_8h__incl.pdf): PDF inc
lusion: multiple pdfs with page group included in a single page
> [49]) (./rostlab__stdlib_8h.tex <./rostlab__stdlib_8h__incl.pdf> [50])
(./umask__resource_8h.tex <./umask__resource_8h__incl.pdf> [51]) [52]
No file refman.ind.
(./refman.aux)

LaTeX Warning: There were undefined references.


LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.


Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmsy8.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrb8a.pf
b></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share
/texlive/texmf-dist/fonts/type1/urw/courier/ucrro8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/share/texlive/texmf-dist/font
s/type1/urw/helvetic/uhvb8ac.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uh
vro8a.pfb>
Output written on refman.pdf (54 pages, 394690 bytes).
Transcript written on refman.log.
This is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support).
Scanning input file refman.idx....done (200 entries accepted, 0 rejected).
Sorting entries.....done (1539 comparisons).
Generating output file refman.ind....done (271 lines written, 0 warnings).
Output written in refman.ind.
Transcript written in refman.ilg.
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-01-09> xparse <2020-03-03>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty

Package fixltx2e Warning: fixltx2e is not required with releases after 2015
(fixltx2e)                All fixes are now in the LaTeX kernel.
(fixltx2e)                See the latexrelease package for details.

) (./doxygen.sty (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty))
(./longtable_doxygen.sty) (./tabu_doxygen.sty
(/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hanging/hanging.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjustbox.sty
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/trimclip.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/collectbox/collectbox.sty)
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/tc-pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/latex/stackengine/stackengine.sty
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/listofitems/listofitems.sty
(/usr/share/texlive/texmf-dist/tex/generic/listofitems/listofitems.tex)))
(/usr/share/texlive/texmf-dist/tex/generic/ulem/ulem.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/wasysym/wasysym.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/helvet.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/courier.sty)
(/usr/share/texlive/texmf-dist/tex/latex/sectsty/sectsty.sty

LaTeX Warning: Command \underbar  has changed.
               Check if current package is valid.


LaTeX Warning: Command \underline  has changed.
               Check if current package is valid.

) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
(/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tocloft/tocloft.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/newunicodechar/newunicodechar.sty)

Package newunicodechar Warning: Redefining Unicode character on input line 115.



Package newunicodechar Warning: Redefining Unicode character on input line 116.


(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
(/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
(/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/backref.sty
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty)
(/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty))
(/usr/share/texlive/texmf-dist/tex/latex/etoc/etoc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./refman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
(./refman.out) (./refman.out)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [2]
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] [3] [4]
[5] [6]
Chapter 1.
(./namespaces.tex) [1] [2]
Chapter 2.
(./hierarchy.tex) [3] [4]
Chapter 3.
(./annotated.tex) [5] [6]
Chapter 4.
(./files.tex) [7] [8]
Chapter 5.
(./namespacerostlab.tex
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] [11]
[12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex)
(./namespacerostlab_1_1bio_1_1fmt.tex) [18]
Chapter 6.
(./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex
[20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23])
(./classrostlab_1_1error__backtracer.tex [24] <./classrostlab_1_1error__backtra
cer__inherit__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1error__backtracer__in
herit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a s
ingle page
> [25]) (./classrostlab_1_1euid__egid__resource.tex [26])
(./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p
df

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__inherit__g
raph.pdf): PDF inclusion: multiple pdfs with page group included in a single pa
ge
> <./classrostlab_1_1exception__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__coll__grap
h.pdf): PDF inclusion: multiple pdfs with page group included in a single page
> [27]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex)
(./classrostlab_1_1file__lock__resource.tex [28] [29] [30])
(./classrostlab_1_1gid__not__found__error.tex <./classrostlab_1_1gid__not__foun
d__error__inherit__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro
r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i
n a single page
> [31] <./classrostlab_1_1gid__not__found__error__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro
r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a
 single page
> [32]) (./classrostlab_1_1gname__not__found__error.tex <./classrostlab_1_1gnam
e__not__found__error__inherit__graph.pdf> <./classrostlab_1_1gname__not__found_
_error__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gname__not__found__er
ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in
 a single page
> [33]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error
__inherit__graph.pdf> [34] <./classrostlab_1_1runtime__error__coll__graph.pdf>
[35]) (./classrostlab_1_1bio_1_1seq.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.

[36]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not
__found__error__inherit__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro
r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i
n a single page
> <./classrostlab_1_1uid__not__found__error__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro
r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a
 single page
> [37] [38]) (./classrostlab_1_1umask__resource.tex)
(./classrostlab_1_1uname__not__found__error.tex <./classrostlab_1_1uname__not__
found__error__inherit__graph.pdf> [39] <./classrostlab_1_1uname__not__found__er
ror__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er
ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in
 a single page
> [40]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostl
ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1
_1file__lock__resource_1_1wouldblock__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1file__lock__resource_
1_1wouldblock__coll__graph.pdf): PDF inclusion: multiple pdfs with page group i
ncluded in a single page
> [41]) [42]
Chapter 7.
(./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [43])
(./blosum62_8h.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pdf>
[44]) (./cxxgrp_8h.tex <./cxxgrp_8h__incl.pdf>) (./cxxpwd_8h.tex <./cxxpwd_8h__
incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./cxxpwd_8h__incl.pdf): PDF inclusion: 
multiple pdfs with page group included in a single page
> [45]) (./euid__egid__resource_8h.tex <./euid__egid__resource_8h__incl.pdf>
[46]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf>)
(./mapAA2int_8h.tex <./mapAA2int_8h__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./mapAA2int_8h__incl.pdf): PDF inclusio
n: multiple pdfs with page group included in a single page
> [47]) (./readFasta_8h.tex <./readFasta_8h__incl.pdf> [48])
(./rostlab__stdexcept_8h.tex <./rostlab__stdexcept_8h__incl.pdf> <./rostlab__st
dexcept_8h__dep__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__dep__incl.pdf)
: PDF inclusion: multiple pdfs with page group included in a single page
>) (./rostlab__stdio_8h.tex <./rostlab__stdio_8h__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdio_8h__incl.pdf): PDF inc
lusion: multiple pdfs with page group included in a single page
> [49]) (./rostlab__stdlib_8h.tex <./rostlab__stdlib_8h__incl.pdf> [50])
(./umask__resource_8h.tex <./umask__resource_8h__incl.pdf> [51]) [52]
(./refman.ind [53] [54] [55]) (./refman.aux)

Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmsy8.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrb8a.pf
b></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share
/texlive/texmf-dist/fonts/type1/urw/courier/ucrro8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/share/texlive/texmf-dist/font
s/type1/urw/helvetic/uhvb8ac.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uh
vro8a.pfb>
Output written on refman.pdf (63 pages, 427130 bytes).
Transcript written on refman.log.
make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
   dh_auto_build -Nlibrostlab-doc
	make -j3
make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
make  all-recursive
make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
Making all in lib
make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib'
make  all-am
make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp  -fPIC -DPIC -o .libs/librostlab_la-blosum62.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -o librostlab_la-blosum62.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=link g++ -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab.la -rpath /usr/lib/arm-linux-gnueabihf librostlab_la-blosum62.lo  
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/10/crtbeginS.o  .libs/librostlab_la-blosum62.o   -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/10/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,librostlab.so.3 -o .libs/librostlab.so.3.0.0
libtool: link: (cd ".libs" && rm -f "librostlab.so.3" && ln -s "librostlab.so.3.0.0" "librostlab.so.3")
libtool: link: (cd ".libs" && rm -f "librostlab.so" && ln -s "librostlab.so.3.0.0" "librostlab.so")
libtool: link: ar cr .libs/librostlab.a  librostlab_la-blosum62.o
libtool: link: ranlib .libs/librostlab.a
libtool: link: ( cd ".libs" && rm -f "librostlab.la" && ln -s "../librostlab.la" "librostlab.la" )
make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
   dh_auto_test
	make -j3 check VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
Making check in lib
make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib'
make  check-am
make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install
	make -j1 install DESTDIR=/build/reproducible-path/librostlab-1.0.20/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
Making install in lib
make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib'
make  install-am
make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib'
 /bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf'
 /bin/bash ../libtool   --mode=install /usr/bin/install -c   librostlab.la '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/librostlab.so.3.0.0 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.so.3.0.0
libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab.so.3.0.0 librostlab.so.3 || { rm -f librostlab.so.3 && ln -s librostlab.so.3.0.0 librostlab.so.3; }; })
libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab.so.3.0.0 librostlab.so || { rm -f librostlab.so && ln -s librostlab.so.3.0.0 librostlab.so; }; })
libtool: install: /usr/bin/install -c .libs/librostlab.lai /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.la
libtool: install: /usr/bin/install -c .libs/librostlab.a /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.a
libtool: install: chmod 644 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.a
libtool: install: ranlib /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
 /bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab'
 /usr/bin/install -c -m 644 rostlab/aux_functions.h rostlab/blosum62.h rostlab/cwd_resource.h rostlab/cxxgrp.h rostlab/cxxpwd.h rostlab/euid_egid_resource.h rostlab/file_lock_resource.h rostlab/mapAA2int.h rostlab/readFasta.h rostlab/rostlab_stdexcept.h rostlab/rostlab_stdio.h rostlab/rostlab_stdlib.h rostlab/umask_resource.h '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab'
make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib'
make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
   debian/rules override_dh_install-arch
make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
dh_install
d-shlibmove --commit \
	    --multiarch \
	    --exclude-la \
	    --movedev debian/tmp/usr/include/* usr/include \
	    debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/librostlab3-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/librostlab3/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.a debian/librostlab3-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.so debian/librostlab3-dev/usr/lib/arm-linux-gnueabihf
mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.so.3 debian/librostlab3/usr/lib/arm-linux-gnueabihf
mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.so.3.0.0 debian/librostlab3/usr/lib/arm-linux-gnueabihf
PKGDEV=librostlab3-dev
PKGSHL=librostlab3
install -d -m 755 debian/librostlab3-dev/usr/include
mv debian/tmp/usr/include/rostlab debian/librostlab3-dev/usr/include
make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
   debian/rules override_dh_installdocs
make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
dh_installdocs
dh_installdocs: warning: Cannot auto-detect main package for librostlab-doc.  If the default is wrong, please use --doc-main-package
find debian -name "*_*.md5" -delete
make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
   dh_installchangelogs
   dh_installexamples
   dh_perl
   dh_link
   dh_linktree
   dh_strip_nondeterminism
   debian/rules override_dh_compress
make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20'
dh_compress -Xlibrostlab.tag
make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20'
   dh_fixperms
   dh_missing
dh_missing: warning: usr/lib/arm-linux-gnueabihf/librostlab.la exists in debian/tmp but is not installed to anywhere 
	The following debhelper tools have reported what they installed (with files per package)
	 * dh_install: librostlab-doc (0), librostlab3 (0), librostlab3-dev (0)
	 * dh_installdocs: librostlab-doc (3), librostlab3 (0), librostlab3-dev (2)
	 * dh_installexamples: librostlab-doc (0), librostlab3 (0), librostlab3-dev (1)
	If the missing files are installed by another tool, please file a bug against it.
	When filing the report, if the tool is not part of debhelper itself, please reference the
	"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
	  (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
	Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
	If the omission is intentional or no other helper can take care of this consider adding the
	paths to debian/not-installed.

	Remember to be careful with paths containing "arm-linux-gnueabihf", where you might need to
	use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed
	to ensure it works on all architectures (see #961104).
   dh_dwz
   dh_strip
   dh_makeshlibs
   dh_shlibdeps
   dh_installdeb
   dh_gencontrol
dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${js:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'librostlab3' in '../librostlab3_1.0.20-10_armhf.deb'.
dpkg-deb: building package 'librostlab3-dev' in '../librostlab3-dev_1.0.20-10_armhf.deb'.
dpkg-deb: building package 'librostlab3-dbgsym' in '../librostlab3-dbgsym_1.0.20-10_armhf.deb'.
dpkg-deb: building package 'librostlab-doc' in '../librostlab-doc_1.0.20-10_all.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../librostlab_1.0.20-10_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/15403 and its subdirectories
I: Current time: Sat Jan  6 14:33:08 -12 2024
I: pbuilder-time-stamp: 1704594788