I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 6 23:39:31 -12 2024 I: pbuilder-time-stamp: 1704627571 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [logol_1.7.9-3.dsc] I: copying [./logol_1.7.9.orig.tar.bz2] I: copying [./logol_1.7.9-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.2LXSbxFT/trustedkeys.kbx': General error gpgv: Signature made Thu May 20 06:14:58 2021 gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 gpgv: issuer "osallou@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./logol_1.7.9-3.dsc dpkg-source: info: extracting logol in logol-1.7.9 dpkg-source: info: unpacking logol_1.7.9.orig.tar.bz2 dpkg-source: info: unpacking logol_1.7.9-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_drmaa_support dpkg-source: info: applying fixLibPath dpkg-source: info: applying setDebianDirs dpkg-source: info: applying fix_doc_generation dpkg-source: info: applying remove_rubygems_usage dpkg-source: info: applying fix_antlr35 dpkg-source: info: applying fix_swipl_declarations dpkg-source: info: applying fix_swipl_foreign_load dpkg-source: info: applying remove_test I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11428/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='04ab8111b1864ff896a0d5e784a19d69' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11428' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pqrC4acs/pbuilderrc_jB9q --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pqrC4acs/b1 --logfile b1/build.log logol_1.7.9-3.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-17-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Mar 27 2022 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 47492 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 124508 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 64212 Apr 10 2022 gzip -rwxr-xr-x 1 root root 13784 Nov 7 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jan 20 2022 more -rwsr-xr-x 1 root root 34400 Jan 20 2022 mount -rwxr-xr-x 1 root root 9824 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 7 09:28 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jan 20 2022 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jan 20 2022 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/11428/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), default-jdk, ant, ruby, gawk, swi-prolog, libbiojava-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17486 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on ant; however: Package ant is not installed. pbuilder-satisfydepends-dummy depends on ruby; however: Package ruby is not installed. pbuilder-satisfydepends-dummy depends on gawk; however: Package gawk is not installed. pbuilder-satisfydepends-dummy depends on swi-prolog; however: Package swi-prolog is not installed. pbuilder-satisfydepends-dummy depends on libbiojava-java; however: Package libbiojava-java is not installed. pbuilder-satisfydepends-dummy depends on antlr3; however: Package antlr3 is not installed. pbuilder-satisfydepends-dummy depends on libcommons-cli-java; however: Package libcommons-cli-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-collections3-java; however: Package libcommons-collections3-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-configuration-java; however: Package libcommons-configuration-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-lang-java; however: Package libcommons-lang-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-logging-java; however: Package libcommons-logging-java is not installed. pbuilder-satisfydepends-dummy depends on libxalan2-java; however: Package libxalan2-java is not installed. pbuilder-satisfydepends-dummy depends on libxerces2-java; however: Package libxerces2-java is not installed. pbuilder-satisfydepends-dummy depends on junit4; however: Package junit4 is not installed. pbuilder-satisfydepends-dummy depends on libmail-java; however: Package libmail-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j1.2-java; however: Package liblog4j1.2-java is not installed. pbuilder-satisfydepends-dummy depends on texlive; however: Package texlive is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on tex4ht; however: Package tex4ht is not installed. pbuilder-satisfydepends-dummy depends on ant-optional; however: Package ant-optional is not installed. pbuilder-satisfydepends-dummy depends on cassiopee; however: Package cassiopee is not installed. pbuilder-satisfydepends-dummy depends on ruby-cassiopee; however: Package ruby-cassiopee is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} antlr3{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cassiopee{a} chrpath{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} java-common{a} junit4{a} libactivation-java{a} libantlr3-runtime-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbiojava-java{a} libbiojava1.7-java{a} libboost-serialization1.74.0{a} libbrotli1{a} libbsd0{a} libbytecode-java{a} libcairo2{a} libcassie1v5{a} libcommons-cli-java{a} libcommons-collections3-java{a} libcommons-configuration-java{a} libcommons-dbcp-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcommons-pool-java{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libgflags2.2{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-glog0v5{a} libgraphite2-3{a} libhamcrest-java{a} libharfbuzz0b{a} libhsqldb-java{a} libice6{a} libicu67{a} libjpeg62-turbo{a} libkpathsea6{a} liblcms2-2{a} libllvm11{a} liblog4j1.2-java{a} libmagic-mgc{a} libmagic1{a} libmail-java{a} libmd0{a} libmpdec3{a} libnspr4{a} libnss3{a} libossp-uuid16{a} libpaper-utils{a} libpaper1{a} libpcsclite1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libptexenc1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libruby2.7{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsigsegv2{a} libsm6{a} libstringtemplate4-java{a} libsub-override-perl{a} libsynctex2{a} libtcmalloc-minimal4{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libtool{a} libuchardet0{a} libvulkan1{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxalan2-java{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} preview-latex-style{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} rake{a} readline-common{a} ruby{a} ruby-cassiopee{a} ruby-minitest{a} ruby-net-telnet{a} ruby-power-assert{a} ruby-rubygems{a} ruby-test-unit{a} ruby-text{a} ruby-xmlrpc{a} ruby2.7{a} rubygems-integration{a} sensible-utils{a} swi-prolog{a} swi-prolog-core{a} swi-prolog-core-packages{a} swi-prolog-doc{a} swi-prolog-nox{a} swi-prolog-x{a} t1utils{a} tex-common{a} texlive{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus dvisvgm fonts-dejavu-extra fonts-lato libarchive-cpio-perl libatk-wrapper-java-jni libfile-mimeinfo-perl libglib2.0-data libjs-jquery libltdl-dev libmail-sendmail-perl libnet-dbus-perl libstringtemplate-java libx11-protocol-perl libxt-dev lmodern lynx mesa-vulkan-drivers shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs zip 0 packages upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 304 MB of archives. After unpacking 871 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8+deb11u1 [139 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf gawk armhf 1:5.1.0-1 [568 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2+deb11u5 [78.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf tzdata all 2021a-1+deb11u10 [286 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf tex-common all 6.16 [53.7 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf openssl armhf 1.1.1w-0+deb11u1 [835 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf ca-certificates all 20210119 [158 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3+deb11u1 [273 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3+deb11u1 [120 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3+deb11u1 [68.2 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf libnspr4 armhf 2:4.29-1 [90.7 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libnss3 armhf 2:3.61-1+deb11u3 [1114 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf java-common all 0.72 [14.5 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libavahi-common-data armhf 0.8-5+deb11u2 [124 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libavahi-common3 armhf 0.8-5+deb11u2 [55.5 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libdbus-1-3 armhf 1.12.28-0+deb11u1 [200 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf libavahi-client3 armhf 0.8-5+deb11u2 [58.9 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libcups2 armhf 2.3.3op2-3+deb11u6 [318 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1+deb11u1 [357 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libasound2-data all 1.2.4-1.1 [38.2 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf libasound2 armhf 1.2.4-1.1 [310 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libharfbuzz0b armhf 2.7.4-1 [1427 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libpcsclite1 armhf 1.9.1-1 [57.2 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jre-headless armhf 11.0.20+8-1~deb11u1 [33.8 MB] Get: 54 http://deb.debian.org/debian bullseye/main armhf default-jre-headless armhf 2:1.11-72 [10.9 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf ant all 1.10.9-4 [2118 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf ant-optional all 1.10.9-4 [381 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libantlr3-runtime-java all 3.5.2-9 [166 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libstringtemplate4-java all 4.0.8-2.1 [241 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf antlr3 all 3.5.2-9 [1142 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74.0 armhf 1.74.0-9 [321 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libgflags2.2 armhf 2.2.2-2 [66.4 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libgoogle-glog0v5 armhf 0.4.0-4 [50.1 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libcassie1v5 armhf 1.0.9-3+b1 [35.5 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf cassiopee armhf 1.0.9-3+b1 [16.7 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf chrpath armhf 0.16-2+b1 [15.9 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7+deb11u4 [602 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libglvnd0 armhf 1.3.2-1 [51.8 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1+deb11u1 [103 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.2-1+deb11u1 [711 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf libdrm-common all 2.4.104-1 [14.9 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf libdrm2 armhf 2.4.104-1 [37.7 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf libglapi-mesa armhf 20.3.5-1 [80.2 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf libx11-xcb1 armhf 2:1.7.2-1+deb11u1 [203 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf libxcb-glx0 armhf 1.14-3 [116 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf libxcb-present0 armhf 1.14-3 [101 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf libxcb-sync1 armhf 1.14-3 [104 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB] Get: 105 http://deb.debian.org/debian bullseye/main armhf libxdamage1 armhf 1:1.1.5-2 [15.1 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf libxfixes3 armhf 1:5.0.3-2 [20.6 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 109 http://deb.debian.org/debian bullseye/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf libdrm-amdgpu1 armhf 2.4.104-1 [27.1 kB] Get: 111 http://deb.debian.org/debian bullseye/main armhf libdrm-nouveau2 armhf 2.4.104-1 [24.6 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf libdrm-radeon1 armhf 2.4.104-1 [27.6 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf libz3-4 armhf 4.8.10-1 [5959 kB] Get: 115 http://deb.debian.org/debian bullseye/main armhf libllvm11 armhf 1:11.0.1-2 [15.4 MB] Get: 116 http://deb.debian.org/debian bullseye/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB] Get: 118 http://deb.debian.org/debian bullseye/main armhf libvulkan1 armhf 1.2.162.0-1 [84.3 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf libgl1-mesa-dri armhf 20.3.5-1 [6037 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf libglx-mesa0 armhf 20.3.5-1 [167 kB] Get: 121 http://deb.debian.org/debian bullseye/main armhf libglx0 armhf 1.3.2-1 [32.8 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf libgl1 armhf 1.3.2-1 [94.3 kB] Get: 123 http://deb.debian.org/debian bullseye/main armhf libgif7 armhf 5.1.9-2 [42.7 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf libxi6 armhf 2:1.7.10-1 [78.5 kB] Get: 125 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf libxtst6 armhf 2:1.2.3-1 [26.3 kB] Get: 128 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jre armhf 11.0.20+8-1~deb11u1 [171 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf default-jre armhf 2:1.11-72 [1044 B] Get: 130 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jdk-headless armhf 11.0.20+8-1~deb11u1 [64.7 MB] Get: 131 http://deb.debian.org/debian bullseye/main armhf default-jdk-headless armhf 2:1.11-72 [1100 B] Get: 132 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jdk armhf 11.0.20+8-1~deb11u1 [2085 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf default-jdk armhf 2:1.11-72 [1056 B] Get: 134 http://deb.debian.org/debian bullseye/main armhf fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 135 http://deb.debian.org/debian bullseye/main armhf libhamcrest-java all 1.3-9 [388 kB] Get: 136 http://deb.debian.org/debian bullseye/main armhf junit4 all 4.13.1-2 [347 kB] Get: 137 http://deb.debian.org/debian bullseye/main armhf libactivation-java all 1.2.0-2 [84.7 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf libapache-pom-java all 18-1 [4676 B] Get: 139 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+deb11u1 [303 kB] Get: 140 http://deb.debian.org/debian bullseye/main armhf libcommons-pool-java all 1.6-4 [109 kB] Get: 141 http://deb.debian.org/debian bullseye/main armhf libcommons-collections3-java all 3.2.2-2 [526 kB] Get: 142 http://deb.debian.org/debian bullseye/main armhf libcommons-dbcp-java all 1.4-7 [157 kB] Get: 143 http://deb.debian.org/debian bullseye/main armhf libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 144 http://deb.debian.org/debian bullseye/main armhf libhsqldb-java all 2.5.1-1+deb11u2 [1556 kB] Get: 145 http://deb.debian.org/debian bullseye/main armhf libbytecode-java all 0.92.svn.20090106-2.1 [88.9 kB] Get: 146 http://deb.debian.org/debian bullseye/main armhf libbiojava1.7-java all 1:1.7.1-9 [3274 kB] Get: 147 http://deb.debian.org/debian bullseye/main armhf libbiojava-java all 1:1.7.1-9 [48.7 kB] Get: 148 http://deb.debian.org/debian bullseye/main armhf libpixman-1-0 armhf 0.40.0-1.1~deb11u1 [466 kB] Get: 149 http://deb.debian.org/debian bullseye/main armhf libxcb-render0 armhf 1.14-3 [110 kB] Get: 150 http://deb.debian.org/debian bullseye/main armhf libcairo2 armhf 1.16.0-5 [615 kB] Get: 151 http://deb.debian.org/debian bullseye/main armhf libcommons-cli-java all 1.4-2 [57.3 kB] Get: 152 http://deb.debian.org/debian bullseye/main armhf libcommons-parent-java all 43-1 [10.8 kB] Get: 153 http://deb.debian.org/debian bullseye/main armhf libcommons-lang-java all 2.6-9 [273 kB] Get: 154 http://deb.debian.org/debian bullseye/main armhf libcommons-logging-java all 1.2-2 [62.2 kB] Get: 155 http://deb.debian.org/debian bullseye/main armhf libcommons-configuration-java all 1.10-5 [330 kB] Get: 156 http://deb.debian.org/debian bullseye/main armhf libfontbox-java all 1:1.8.16-2 [211 kB] Get: 157 http://deb.debian.org/debian bullseye/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 158 http://deb.debian.org/debian bullseye/main armhf libkpathsea6 armhf 2020.20200327.54578-7+deb11u1 [163 kB] Get: 159 http://deb.debian.org/debian bullseye/main armhf liblog4j1.2-java all 1.2.17-10+deb11u1 [409 kB] Get: 160 http://deb.debian.org/debian bullseye/main armhf libmail-java all 1.6.5-1 [694 kB] Get: 161 http://deb.debian.org/debian bullseye/main armhf libossp-uuid16 armhf 1.6.2-1.5+b9 [35.8 kB] Get: 162 http://deb.debian.org/debian bullseye/main armhf libpaper1 armhf 1.1.28+b1 [20.8 kB] Get: 163 http://deb.debian.org/debian bullseye/main armhf libpaper-utils armhf 1.1.28+b1 [17.9 kB] Get: 164 http://deb.debian.org/debian bullseye/main armhf libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 165 http://deb.debian.org/debian bullseye/main armhf libptexenc1 armhf 2020.20200327.54578-7+deb11u1 [61.3 kB] Get: 166 http://deb.debian.org/debian bullseye/main armhf rubygems-integration all 1.18 [6704 B] Get: 167 http://deb.debian.org/debian bullseye/main armhf ruby2.7 armhf 2.7.4-1+deb11u1 [747 kB] Get: 168 http://deb.debian.org/debian bullseye/main armhf ruby-rubygems all 3.2.5-2 [281 kB] Get: 169 http://deb.debian.org/debian bullseye/main armhf ruby armhf 1:2.7+2 [11.7 kB] Get: 170 http://deb.debian.org/debian bullseye/main armhf rake all 13.0.3-1 [84.7 kB] Get: 171 http://deb.debian.org/debian bullseye/main armhf ruby-minitest all 5.13.0-1 [57.3 kB] Get: 172 http://deb.debian.org/debian bullseye/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB] Get: 173 http://deb.debian.org/debian bullseye/main armhf ruby-power-assert all 1.1.7-2 [11.5 kB] Get: 174 http://deb.debian.org/debian bullseye/main armhf ruby-test-unit all 3.3.9-1 [86.1 kB] Get: 175 http://deb.debian.org/debian bullseye/main armhf ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get: 176 http://deb.debian.org/debian bullseye/main armhf libyaml-0-2 armhf 0.2.2-1 [42.0 kB] Get: 177 http://deb.debian.org/debian bullseye/main armhf libruby2.7 armhf 2.7.4-1+deb11u1 [3957 kB] Get: 178 http://deb.debian.org/debian bullseye/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 179 http://deb.debian.org/debian bullseye/main armhf libsynctex2 armhf 2020.20200327.54578-7+deb11u1 [70.4 kB] Get: 180 http://deb.debian.org/debian bullseye/main armhf libtcmalloc-minimal4 armhf 2.8.1-1 [82.7 kB] Get: 181 http://deb.debian.org/debian bullseye/main armhf libteckit0 armhf 2.5.10+ds1-3 [253 kB] Get: 182 http://deb.debian.org/debian bullseye/main armhf libtexlua53 armhf 2020.20200327.54578-7+deb11u1 [102 kB] Get: 183 http://deb.debian.org/debian bullseye/main armhf libtexluajit2 armhf 2020.20200327.54578-7+deb11u1 [205 kB] Get: 184 http://deb.debian.org/debian bullseye/main armhf libxml-commons-external-java all 1.4.01-5 [240 kB] Get: 185 http://deb.debian.org/debian bullseye/main armhf libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 186 http://deb.debian.org/debian bullseye/main armhf libxerces2-java all 2.12.1-1 [1440 kB] Get: 187 http://deb.debian.org/debian bullseye/main armhf libxalan2-java all 2.7.2-4 [3419 kB] Get: 188 http://deb.debian.org/debian bullseye/main armhf libxt6 armhf 1:1.2.0-1 [161 kB] Get: 189 http://deb.debian.org/debian bullseye/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB] Get: 190 http://deb.debian.org/debian bullseye/main armhf libxpm4 armhf 1:3.5.12-1.1~deb11u1 [44.1 kB] Get: 191 http://deb.debian.org/debian bullseye/main armhf libxaw7 armhf 2:1.0.13-1.1 [167 kB] Get: 192 http://deb.debian.org/debian bullseye/main armhf libxft2 armhf 2.3.2-2 [50.1 kB] Get: 193 http://deb.debian.org/debian bullseye/main armhf libzzip-0-13 armhf 0.13.62-3.3+deb11u1 [52.0 kB] Get: 194 http://deb.debian.org/debian bullseye/main armhf preview-latex-style all 12.2-1 [201 kB] Get: 195 http://deb.debian.org/debian bullseye/main armhf ruby-text all 1.3.0-1.1 [13.1 kB] Get: 196 http://deb.debian.org/debian bullseye/main armhf ruby-cassiopee all 0.1.13-1 [11.5 kB] Get: 197 http://deb.debian.org/debian bullseye/main armhf swi-prolog-core armhf 8.2.4+dfsg-1 [1268 kB] Get: 198 http://deb.debian.org/debian bullseye/main armhf swi-prolog-doc all 8.2.4+dfsg-1 [1394 kB] Get: 199 http://deb.debian.org/debian bullseye/main armhf swi-prolog-core-packages armhf 8.2.4+dfsg-1 [1152 kB] Get: 200 http://deb.debian.org/debian bullseye/main armhf swi-prolog-nox armhf 8.2.4+dfsg-1 [159 kB] Get: 201 http://deb.debian.org/debian bullseye/main armhf swi-prolog-x armhf 8.2.4+dfsg-1 [1984 kB] Get: 202 http://deb.debian.org/debian bullseye/main armhf swi-prolog armhf 8.2.4+dfsg-1 [27.6 kB] Get: 203 http://deb.debian.org/debian bullseye/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 204 http://deb.debian.org/debian bullseye/main armhf texlive-binaries armhf 2020.20200327.54578-7+deb11u1 [7620 kB] Get: 205 http://deb.debian.org/debian bullseye/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 206 http://deb.debian.org/debian bullseye/main armhf texlive-base all 2020.20210202-3 [20.8 MB] Get: 207 http://deb.debian.org/debian bullseye/main armhf texlive-fonts-recommended all 2020.20210202-3 [5002 kB] Get: 208 http://deb.debian.org/debian bullseye/main armhf texlive-latex-base all 2020.20210202-3 [1120 kB] Get: 209 http://deb.debian.org/debian bullseye/main armhf texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 210 http://deb.debian.org/debian bullseye/main armhf texlive all 2020.20210202-3 [34.2 kB] Get: 211 http://deb.debian.org/debian bullseye/main armhf texlive-pictures all 2020.20210202-3 [6743 kB] Get: 212 http://deb.debian.org/debian bullseye/main armhf texlive-latex-extra all 2020.20210202-3 [13.7 MB] Get: 213 http://deb.debian.org/debian bullseye/main armhf texlive-plain-generic all 2020.20210202-3 [27.0 MB] Fetched 304 MB in 6s (53.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17486 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_armhf.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. 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Setting up libossp-uuid16:armhf (1.6.2-1.5+b9) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jan 7 11:43:17 UTC 2024. Universal Time is now: Sun Jan 7 11:43:17 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ruby-minitest (5.13.0-1) ... Setting up libcommons-collections3-java (3.2.2-2) ... Setting up libasound2-data (1.2.4-1.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:armhf (4.8.10-1) ... Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up ruby-test-unit (3.3.9-1) ... Setting up libx11-data (2:1.7.2-1+deb11u1) ... Setting up libnspr4:armhf (2:4.29-1) ... Setting up libteckit0:armhf (2.5.10+ds1-3) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:armhf (0.8-5+deb11u2) ... Setting up libdbus-1-3:armhf (1.12.28-0+deb11u1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up t1utils (1.41-4) ... Setting up libpng16-16:armhf (1.6.37-3) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up swi-prolog-core (8.2.4+dfsg-1) ... update-alternatives: using /usr/bin/swipl to provide /usr/bin/prolog (prolog) in auto mode Setting up libcommons-pool-java (1.6-4) ... Setting up autopoint (0.21-4) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libpcsclite1:armhf (1.9.1-1) ... Setting up libsensors5:armhf (1:3.6.0-7) ... Setting up libactivation-java (1.2.0-2) ... Setting up libhamcrest-java (1.3-9) ... Setting up libglapi-mesa:armhf (20.3.5-1) ... Setting up libkpathsea6:armhf (2020.20200327.54578-7+deb11u1) ... Setting up libvulkan1:armhf (1.2.162.0-1) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74.0:armhf (1.74.0-9) ... Setting up libgif7:armhf (5.1.9-2) ... Setting up libantlr3-runtime-java (3.5.2-9) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up libmail-java (1.6.5-1) ... Setting up swi-prolog-core-packages (8.2.4+dfsg-1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libxml-commons-external-java (1.4.01-5) ... Setting up libasound2:armhf (1.2.4-1.1) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libxerces2-java (2.12.1-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:armhf (0.11.3-1+deb11u1) ... Setting up libdrm-common (2.4.104-1) ... Setting up libelf1:armhf (0.183-1) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7+deb11u4) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up chrpath (0.16-2+b1) ... Setting up libsynctex2:armhf (2020.20200327.54578-7+deb11u1) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up libgflags2.2 (2.2.2-2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libcommons-dbcp-java (1.4-7) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libxcb1:armhf (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libxcb-xfixes0:armhf (1.14-3) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libstringtemplate4-java (4.0.8-2.1) ... Setting up libtool (2.4.6-15) ... Setting up libhsqldb-java (2.5.1-1+deb11u2) ... Setting up libarchive13:armhf (3.4.3-2+deb11u1) ... Setting up libxcb-render0:armhf (1.14-3) ... Setting up libxcb-glx0:armhf (1.14-3) ... Setting up libedit2:armhf (3.1-20191231-2+b1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:armhf (0.8-5+deb11u2) ... Setting up swi-prolog-doc (8.2.4+dfsg-1) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libnss3:armhf (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:armhf (1.14-3) ... Setting up libcommons-lang-java (2.6-9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:armhf (1.14-3) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libllvm11:armhf (1:11.0.1-2) ... Setting up libptexenc1:armhf (2020.20200327.54578-7+deb11u1) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1+deb11u1) ... Setting up libxcb-sync1:armhf (1.14-3) ... Setting up libxalan2-java (2.7.2-4) ... Setting up ucf (3.0043) ... Setting up libxcb-dri2-0:armhf (1.14-3) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libdrm2:armhf (2.4.104-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up swi-prolog-nox (8.2.4+dfsg-1) ... Setting up libx11-6:armhf (2:1.7.2-1+deb11u1) ... Setting up libharfbuzz0b:armhf (2.7.4-1) ... Setting up libcommons-configuration-java (1.10-5) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libgoogle-glog0v5 (0.4.0-4) ... Setting up libavahi-client3:armhf (0.8-5+deb11u2) ... Setting up python3.9 (3.9.2-1) ... Setting up libdrm-amdgpu1:armhf (2.4.104-1) ... Setting up libxcb-dri3-0:armhf (1.14-3) ... Setting up libpaper1:armhf (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libx11-xcb1:armhf (2:1.7.2-1+deb11u1) ... Setting up libdrm-nouveau2:armhf (2.4.104-1) ... Setting up libxdamage1:armhf (1:1.1.5-2) ... Setting up libxpm4:armhf (1:3.5.12-1.1~deb11u1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libcassie1v5 (1.0.9-3+b1) ... Setting up libdrm-radeon1:armhf (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libgl1-mesa-dri:armhf (20.3.5-1) ... Setting up cassiopee (1.0.9-3+b1) ... Setting up libxext6:armhf (2:1.3.3-1.1) ... Setting up python3 (3.9.2-3) ... Setting up rubygems-integration (1.18) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxfixes3:armhf (1:5.0.3-2) ... Setting up libxt6:armhf (1:1.2.0-1) ... Setting up libcups2:armhf (2.3.3op2-3+deb11u6) ... Setting up libfontconfig1:armhf (2.13.1-4.2) ... Setting up libxft2:armhf (2.3.2-2) ... Setting up libxmu6:armhf (2:1.1.2-2+b3) ... Setting up libglx-mesa0:armhf (20.3.5-1) ... Setting up libxi6:armhf (2:1.7.10-1) ... Setting up libglx0:armhf (1.3.2-1) ... Setting up libxtst6:armhf (2:1.2.3-1) ... Setting up preview-latex-style (12.2-1) ... Setting up debhelper (13.3.4) ... Setting up libxaw7:armhf (2:1.0.13-1.1) ... Setting up libcairo2:armhf (1.16.0-5) ... Setting up libgl1:armhf (1.3.2-1) ... Setting up texlive-binaries (2020.20200327.54578-7+deb11u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up swi-prolog-x (8.2.4+dfsg-1) ... Setting up texlive-plain-generic (2020.20210202-3) ... Setting up texlive-latex-base (2020.20210202-3) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up texlive-fonts-recommended (2020.20210202-3) ... Setting up swi-prolog (8.2.4+dfsg-1) ... Setting up texlive (2020.20210202-3) ... Setting up texlive-latex-extra (2020.20210202-3) ... Setting up rake (13.0.3-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:armhf (11.0.20+8-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:armhf (11.0.20+8-1~deb11u1) ... Setting up ruby-rubygems (3.2.5-2) ... Setting up openjdk-11-jdk-headless:armhf (11.0.20+8-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up libruby2.7:armhf (2.7.4-1+deb11u1) ... Setting up default-jre (2:1.11-72) ... Setting up default-jdk-headless (2:1.11-72) ... Setting up antlr3 (3.5.2-9) ... Setting up ant (1.10.9-4) ... Setting up openjdk-11-jdk:armhf (11.0.20+8-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Secure_Global_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GTS_Root_R1.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Certigna_Root_CA.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:GTS_Root_R3.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Certigna.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:ISRG_Root_X1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:GTS_Root_R2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ACCVRAIZ1.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:Izenpe.com.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:AffirmTrust_Networking.pem Adding debian:EC-ACC.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:SecureTrust_CA.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DST_Root_CA_X3.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:AffirmTrust_Premium.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:Amazon_Root_CA_4.pem done. Setting up libbytecode-java (0.92.svn.20090106-2.1) ... Setting up junit4 (4.13.1-2) ... Setting up ruby2.7 (2.7.4-1+deb11u1) ... Setting up default-jdk (2:1.11-72) ... Setting up ant-optional (1.10.9-4) ... Setting up ruby (1:2.7+2) ... Setting up libbiojava1.7-java (1:1.7.1-9) ... Setting up ruby-text (1.3.0-1.1) ... Setting up libbiojava-java (1:1.7.1-9) ... Setting up ruby-cassiopee (0.1.13-1) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/logol-1.7.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../logol_1.7.9-3_source.changes dpkg-buildpackage: info: source package logol dpkg-buildpackage: info: source version 1.7.9-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Olivier Sallou dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/logol-1.7.9' if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi if [ -e prolog/process.so ]; then rm -f prolog/process.so; fi dh_auto_clean ant clean Buildfile: /build/reproducible-path/logol-1.7.9/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. clean: BUILD SUCCESSFUL Total time: 4 seconds make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9' debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/logol-1.7.9' if [ -e tools/pldoc.sty.upstream ]; then mv tools/pldoc.sty.upstream tools/pldoc.sty; fi if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi dh_clean rm -f Swi*.xml rm -f prolog/*.exe rm -f lib/*.jar rm -f *.log rm -f src/org/irisa/genouest/logol/parser/* rm -f tools/suffixSearch.sh rm -rf test/tmp rm -rf test/results make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/logol-1.7.9' if [ ! -e lib ]; then mkdir -p lib; fi if [ ! -e prolog/process.so ]; then ln -s /usr/lib/swi-prolog/lib/arm-linux/process.so prolog/process.so; fi mv tools/pldoc.sty tools/pldoc.sty.upstream dh_auto_build -- -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 ant -Duser.name debian -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 Buildfile: /build/reproducible-path/logol-1.7.9/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. updatemod: setup: compile_swi_exe: [exec] tmp: No such file or directory [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="armv7l-linux" [exec] PLSOEXT="so" [exec] PLLIBDIR="/usr/lib/swi-prolog/lib/armv7l-linux" [exec] PLLIB="-lswipl" [exec] PLTHREADS="yes" [exec] logolSwiMain.c: In function 'main': [exec] logolSwiMain.c:50:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 50 | PL_put_string_chars(ResultFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:52:4: warning: ignoring return value of 'PL_next_solution' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 52 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:58:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 58 | PL_put_string_chars(File,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:62:4: warning: ignoring return value of 'PL_put_integer' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 62 | PL_put_integer(HeaderSize, header); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:67:4: warning: ignoring return value of 'PL_next_solution' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 67 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:76:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 76 | PL_put_string_chars(LogolFile,argv[6]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:78:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 78 | PL_put_string_chars(InFile,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:80:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 80 | PL_put_string_chars(OutFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:82:4: warning: ignoring return value of 'PL_put_integer' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 82 | PL_put_integer(Offset,offset); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:102:4: warning: ignoring return value of 'PL_next_solution' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 102 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:120:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 120 | PL_put_string_chars(ResultFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:122:4: warning: ignoring return value of 'PL_next_solution' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 122 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/sicstus.pl:495: [exec] Warning: Singleton variables: [Before,Length,CountPos,CountLength] [exec] tmp: No such file or directory [exec] ERROR: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:7: [exec] ERROR: catch/3: Unknown procedure: module/3 [exec] ERROR: However, there are definitions for: [exec] ERROR: module/1 [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:7: [exec] Warning: Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[]) [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:206: [exec] Warning: Singleton variables: [Max] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:221: [exec] Warning: Singleton variables: [Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:304: [exec] Warning: Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:304: [exec] Warning: Singleton variable in branch: Tmp1 [exec] Warning: Singleton variable in branch: Tmp2 [exec] Warning: Singleton variable in branch: TmpOutput [exec] Warning: Singleton variable in branch: Continue [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:394: [exec] Warning: Singleton variables: [SequenceLength] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:408: [exec] Warning: Singleton variables: [Unique,Out,Exit] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:434: [exec] Warning: Singleton variables: [SequenceLength] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:472: [exec] Warning: Singleton variables: [NewPos] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:472: [exec] Warning: Singleton variable in branch: NewPos [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:514: [exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:517: [exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:556: [exec] Warning: Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:575: [exec] Warning: Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:590: [exec] Warning: Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:590: [exec] Warning: Singleton variable in branch: Tmp1 [exec] Warning: Singleton variable in branch: Tmp2 [exec] Warning: Singleton variable in branch: IntermediateSpacer [exec] Warning: Singleton variable in branch: TmpOutput [exec] Warning: Singleton variable in branch: Continue [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:673: [exec] Warning: Singleton variables: [InputLength] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:679: [exec] Warning: Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:724: [exec] Warning: Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:964: [exec] Warning: Singleton variables: [Exit] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:993: [exec] Warning: Singleton variables: [Word] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1024: [exec] Warning: Singleton variables: [N,Min,Max,Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1068: [exec] Warning: Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1162: [exec] Warning: Singleton variables: [Errors] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1266: [exec] Warning: Singleton variables: [Morph,Reverse] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1270: [exec] Warning: Singleton variables: [Morph] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1281: [exec] Warning: Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1317: [exec] Warning: Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1341: [exec] Warning: Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1645: [exec] Warning: Singleton variables: [Name] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2036: [exec] Warning: Singleton variables: [Matrix] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2077: [exec] Warning: Singleton variables: [Type] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2180: [exec] Warning: Singleton variables: [Exit] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2335: [exec] Warning: Singleton variables: [FilterPredicate] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2350: [exec] Warning: Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2380: [exec] Warning: Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2395: [exec] Warning: Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2435: [exec] Warning: Singleton variables: [Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2435: [exec] Warning: Singleton variable in branch: Max [exec] Warning: Singleton variable in branch: Z [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2470: [exec] Warning: Singleton variables: [VarId] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2498: [exec] Warning: Singleton variables: [X,Y,Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2516: [exec] Warning: Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2534: [exec] Warning: Singleton variables: [ALPHABET] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2576: [exec] Warning: Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2604: [exec] Warning: Singleton variables: [OPTVAR,ID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2608: [exec] Warning: Singleton variables: [OPTVAR,ID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2624: [exec] Warning: Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2644: [exec] Warning: Singleton variables: [ID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2647: [exec] Warning: Singleton variables: [OPTVAR] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2653: [exec] Warning: Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2701: [exec] Warning: Singleton variables: [DATA] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2752: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2755: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2758: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2761: [exec] Warning: Singleton variables: [MATCH,ALPHABET] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2766: [exec] Warning: Singleton variables: [VAR,VARFOUND] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2769: [exec] Warning: Singleton variables: [VAR,VARFOUND] [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] % Disabled autoloading (loaded 38 files) [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] % Disabled autoloading (loaded 5 files) [exec] % Disabled autoloading (loaded 0 files) [exec] % halt [exec] eval `swipl --dump-runtime-variables` [exec] /usr/bin/cc -c -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o logolSwiMain.o logolSwiMain.c [exec] /usr/bin/cc -o logol.exe -Wl,-rpath=/usr/lib/swi-prolog/lib/armv7l-linux logolSwiMain.o -L/usr/lib/swi-prolog/lib/armv7l-linux -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-13735',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-13735 >> logol.exe [exec] chmod 755 logol.exe [exec] rm logolSwiMain.o [exec] rm pltmp-13735 [exec] tmp: No such file or directory [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="armv7l-linux" [exec] PLSOEXT="so" [exec] PLLIBDIR="/usr/lib/swi-prolog/lib/armv7l-linux" [exec] PLLIB="-lswipl" [exec] PLTHREADS="yes" [exec] preSwiMain.c: In function 'main': [exec] preSwiMain.c:40:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 40 | PL_put_string_chars(LogolFile1,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:42:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 42 | PL_put_string_chars(LogolFile2,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:44:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 44 | PL_put_string_chars(LogolFile3,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:46:4: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result] [exec] 46 | PL_put_string_chars(LogolFile4,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/sicstus.pl:495: [exec] Warning: Singleton variables: [Before,Length,CountPos,CountLength] [exec] tmp: No such file or directory [exec] ERROR: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:7: [exec] ERROR: catch/3: Unknown procedure: module/3 [exec] ERROR: However, there are definitions for: [exec] ERROR: module/1 [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:7: [exec] Warning: Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[]) [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:206: [exec] Warning: Singleton variables: [Max] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:221: [exec] Warning: Singleton variables: [Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:304: [exec] Warning: Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:304: [exec] Warning: Singleton variable in branch: Tmp1 [exec] Warning: Singleton variable in branch: Tmp2 [exec] Warning: Singleton variable in branch: TmpOutput [exec] Warning: Singleton variable in branch: Continue [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:394: [exec] Warning: Singleton variables: [SequenceLength] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:408: [exec] Warning: Singleton variables: [Unique,Out,Exit] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:434: [exec] Warning: Singleton variables: [SequenceLength] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:472: [exec] Warning: Singleton variables: [NewPos] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:472: [exec] Warning: Singleton variable in branch: NewPos [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:514: [exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:517: [exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:556: [exec] Warning: Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:575: [exec] Warning: Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:590: [exec] Warning: Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:590: [exec] Warning: Singleton variable in branch: Tmp1 [exec] Warning: Singleton variable in branch: Tmp2 [exec] Warning: Singleton variable in branch: IntermediateSpacer [exec] Warning: Singleton variable in branch: TmpOutput [exec] Warning: Singleton variable in branch: Continue [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:673: [exec] Warning: Singleton variables: [InputLength] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:679: [exec] Warning: Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:724: [exec] Warning: Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:964: [exec] Warning: Singleton variables: [Exit] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:993: [exec] Warning: Singleton variables: [Word] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1024: [exec] Warning: Singleton variables: [N,Min,Max,Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1068: [exec] Warning: Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1162: [exec] Warning: Singleton variables: [Errors] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1266: [exec] Warning: Singleton variables: [Morph,Reverse] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1270: [exec] Warning: Singleton variables: [Morph] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1281: [exec] Warning: Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1317: [exec] Warning: Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1341: [exec] Warning: Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:1645: [exec] Warning: Singleton variables: [Name] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2036: [exec] Warning: Singleton variables: [Matrix] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2077: [exec] Warning: Singleton variables: [Type] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2180: [exec] Warning: Singleton variables: [Exit] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2335: [exec] Warning: Singleton variables: [FilterPredicate] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2350: [exec] Warning: Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2380: [exec] Warning: Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2395: [exec] Warning: Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2435: [exec] Warning: Singleton variables: [Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2435: [exec] Warning: Singleton variable in branch: Max [exec] Warning: Singleton variable in branch: Z [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2470: [exec] Warning: Singleton variables: [VarId] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2498: [exec] Warning: Singleton variables: [X,Y,Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2516: [exec] Warning: Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2534: [exec] Warning: Singleton variables: [ALPHABET] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2576: [exec] Warning: Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2604: [exec] Warning: Singleton variables: [OPTVAR,ID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2608: [exec] Warning: Singleton variables: [OPTVAR,ID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2624: [exec] Warning: Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2644: [exec] Warning: Singleton variables: [ID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2647: [exec] Warning: Singleton variables: [OPTVAR] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2653: [exec] Warning: Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2701: [exec] Warning: Singleton variables: [DATA] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2752: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2755: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2758: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2761: [exec] Warning: Singleton variables: [MATCH,ALPHABET] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2766: [exec] Warning: Singleton variables: [VAR,VARFOUND] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/logol.pl:2769: [exec] Warning: Singleton variables: [VAR,VARFOUND] [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] % Disabled autoloading (loaded 38 files) [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] % Disabled autoloading (loaded 5 files) [exec] % Disabled autoloading (loaded 0 files) [exec] % halt [exec] eval `swipl --dump-runtime-variables` [exec] /usr/bin/cc -c -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o preSwiMain.o preSwiMain.c [exec] /usr/bin/cc -o preanalyse.exe -Wl,-rpath=/usr/lib/swi-prolog/lib/armv7l-linux preSwiMain.o -L/usr/lib/swi-prolog/lib/armv7l-linux -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-14011',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-14011 >> preanalyse.exe [exec] chmod 755 preanalyse.exe [exec] rm preSwiMain.o [exec] rm pltmp-14011 clean: antlr: [java] /build/reproducible-path/logol-1.7.9/src/logol.g [java] ANTLR Parser Generator Version 3.5.2 compile: [mkdir] Created dir: /build/reproducible-path/logol-1.7.9/bin [javac] /build/reproducible-path/logol-1.7.9/build.xml:91: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 62 source files to /build/reproducible-path/logol-1.7.9/bin [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] /build/reproducible-path/logol-1.7.9/src/org/irisa/genouest/logol/test/GrammarTest.java:1995: warning: unreachable catch clause [javac] } catch (IOException e) { [javac] ^ [javac] thrown type FileNotFoundException has already been caught [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 2 warnings create-jar: [jar] Building jar: /build/reproducible-path/logol-1.7.9/lib/LogolExec.jar test_swi: [mkdir] Created dir: /build/reproducible-path/logol-1.7.9/test/tmp [mkdir] Created dir: /build/reproducible-path/logol-1.7.9/test/results [exec] tmp: No such file or directory [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/unitTest/swi-unit.pl:1: [exec] Warning: Singleton variables: [UnitPath,Lib] [exec] tmp: No such file or directory [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/unitTest/swi-unit.pl:1: [exec] Warning: Goal (directive) failed: user:(prolog_flag(argv,[_5452,_5474,_5496,_5518,_5540,_5562,_5584,_5606,_5628,_5650]),ensure_loaded(_5562)) [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/unitTest/swi-unit.pl:5: [exec] Warning: Singleton variables: [SicPath,Lib] [exec] Warning: /build/reproducible-path/logol-1.7.9/prolog/unitTest/swi-unit.pl:5: [exec] Warning: Goal (directive) failed: user:(prolog_flag(argv,[_6512,_6534,_6556,_6578,_6600,_6622,_6644,_6666,_6688,_6710]),ensure_loaded(_6600)) [exec] Welcome to SWI-Prolog (threaded, 32 bits, version 8.2.4) [exec] SWI-Prolog comes with ABSOLUTELY NO WARRANTY. This is free software. [exec] Please run ?- license. for legal details. [exec] [exec] For online help and background, visit https://www.swi-prolog.org [exec] For built-in help, use ?- help(Topic). or ?- apropos(Word). [exec] [exec] tmp: No such file or directory [exec] tmp: No such file or directory [exec] [exec] tmp: No such file or directory [exec] % halt [junit] Running org.irisa.genouest.logol.test.GrammarTest [junit] Testsuite: org.irisa.genouest.logol.test.GrammarTest [junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 90.761 sec [junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 90.761 sec [junit] [junit] ------------- Standard Output --------------- [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.logol.54831b81-3f44-4a0e-aa76-f20df591f38d.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.logol.54831b81-3f44-4a0e-aa76-f20df591f38d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.logol.54831b81-3f44-4a0e-aa76-f20df591f38d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/repeat_overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_overlap.logol.3324862d-538f-4bb5-ac81-b4869bb2f6bb.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_overlap.logol.3324862d-538f-4bb5-ac81-b4869bb2f6bb.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_overlap.logol.3324862d-538f-4bb5-ac81-b4869bb2f6bb.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/partialcomplement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.Logol - option offset called with 1000 [junit] INFO org.irisa.genouest.logol.Logol - option start called with 5 [junit] INFO org.irisa.genouest.logol.Logol - option end called with 35 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.db825592-6a59-4318-bef5-3d80f5d3348e.1005-1035.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.db825592-6a59-4318-bef5-3d80f5d3348e.reverse.1005-1035.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/partialcomplement.logol.db825592-6a59-4318-bef5-3d80f5d3348e.5-35-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/partialcomplement.logol.db825592-6a59-4318-bef5-3d80f5d3348e.5-35-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/alphabet.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/alphabet.logol.d66ca6f7-aa75-4fae-9f3a-9ff0b5ec7c4b.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/alphabet.logol.d66ca6f7-aa75-4fae-9f3a-9ff0b5ec7c4b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/alphabet.logol.d66ca6f7-aa75-4fae-9f3a-9ff0b5ec7c4b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/optimal.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.logol.07958f46-7268-4bd4-a813-7df515817031.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.logol.07958f46-7268-4bd4-a813-7df515817031.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.logol.07958f46-7268-4bd4-a813-7df515817031.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/repeat_startspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_startspacer.logol.fc1da99e-a79a-4e0a-9133-3a7fd3c3c68d.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_startspacer.logol.fc1da99e-a79a-4e0a-9133-3a7fd3c3c68d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_startspacer.logol.fc1da99e-a79a-4e0a-9133-3a7fd3c3c68d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/overlap.logol.9a56bd65-e75a-420c-8c56-c74a0f0cf8d1.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/overlap.logol.9a56bd65-e75a-420c-8c56-c74a0f0cf8d1.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/overlap.logol.9a56bd65-e75a-420c-8c56-c74a0f0cf8d1.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/end.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end.logol.1b062e80-f52d-4419-8be5-83613a9b7d11.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end.logol.1b062e80-f52d-4419-8be5-83613a9b7d11.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end.logol.1b062e80-f52d-4419-8be5-83613a9b7d11.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/negcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.logol.eba2a0d9-0236-44f1-a1f7-055720e569be.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.logol.eba2a0d9-0236-44f1-a1f7-055720e569be.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.logol.eba2a0d9-0236-44f1-a1f7-055720e569be.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.logol.a53c4f6b-aed9-416e-ac10-78c526bd539e.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.logol.a53c4f6b-aed9-416e-ac10-78c526bd539e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.logol.a53c4f6b-aed9-416e-ac10-78c526bd539e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/1799.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/1799.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1799.logol.80126e44-47a7-4599-9752-e6aaa04c3aef.1-4.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1799.logol.80126e44-47a7-4599-9752-e6aaa04c3aef.0-4-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1799.logol.80126e44-47a7-4599-9752-e6aaa04c3aef.0-4-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/1800.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/1800.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1800.logol.93c48258-ab78-46bd-8bca-2fcbe0354e43.1-19.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1800.logol.93c48258-ab78-46bd-8bca-2fcbe0354e43.0-19-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1800.logol.93c48258-ab78-46bd-8bca-2fcbe0354e43.0-19-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/1806.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1806.logol.a2fe0e30-4242-458d-904c-8d3022d3cb58.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1806.logol.a2fe0e30-4242-458d-904c-8d3022d3cb58.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1806.logol.a2fe0e30-4242-458d-904c-8d3022d3cb58.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/2244.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2244.logol.867dfb1c-89cd-4781-85f4-14ed7f858a39.1-31.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2244.logol.867dfb1c-89cd-4781-85f4-14ed7f858a39.0-31-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2244.logol.867dfb1c-89cd-4781-85f4-14ed7f858a39.0-31-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/2235.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/2235.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2235.logol.170f0708-1f7a-44b3-98c8-cafb1e3a6536.1-26.xml: 6 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 6 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2235.logol.170f0708-1f7a-44b3-98c8-cafb1e3a6536.0-26-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2235.logol.170f0708-1f7a-44b3-98c8-cafb1e3a6536.0-26-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/2242.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/2242.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2242.logol.c11ab4e7-151a-49a6-bcc7-0d772b52e337.1-29.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2242.logol.c11ab4e7-151a-49a6-bcc7-0d772b52e337.0-29-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2242.logol.c11ab4e7-151a-49a6-bcc7-0d772b52e337.0-29-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/2243.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/2243.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2243.logol.97818c9b-cba4-4b5e-8dc1-0ae6a0bb8699.1-15.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2243.logol.97818c9b-cba4-4b5e-8dc1-0ae6a0bb8699.0-15-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2243.logol.97818c9b-cba4-4b5e-8dc1-0ae6a0bb8699.0-15-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/fix2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/fix2244.logol.1c874fd6-113a-4ff2-80eb-755b7c6038a2.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/fix2244.logol.1c874fd6-113a-4ff2-80eb-755b7c6038a2.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/fix2244.logol.1c874fd6-113a-4ff2-80eb-755b7c6038a2.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/halt.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/halt.logol.8d6ab9ea-fddc-4abc-997a-ec4b98fddc66.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/halt.logol.8d6ab9ea-fddc-4abc-997a-ec4b98fddc66.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/halt.logol.8d6ab9ea-fddc-4abc-997a-ec4b98fddc66.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/negcontent2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent2.logol.c396723c-5e24-4cca-86fe-7134eabb3495.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent2.logol.c396723c-5e24-4cca-86fe-7134eabb3495.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent2.logol.c396723c-5e24-4cca-86fe-7134eabb3495.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/negcontent3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent3.logol.679df5dc-2317-4419-b626-4e95a81fcbc4.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent3.logol.679df5dc-2317-4419-b626-4e95a81fcbc4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent3.logol.679df5dc-2317-4419-b626-4e95a81fcbc4.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/external.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external.logol.1fb525d6-0d6a-4665-ba6c-772e7c555d98.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external.logol.1fb525d6-0d6a-4665-ba6c-772e7c555d98.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external.logol.1fb525d6-0d6a-4665-ba6c-772e7c555d98.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/end_of_stream1.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream1.logol.cf646e9b-c8e5-4e5b-ac19-e52217209c41.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream1.logol.cf646e9b-c8e5-4e5b-ac19-e52217209c41.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream1.logol.cf646e9b-c8e5-4e5b-ac19-e52217209c41.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/end_of_stream2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream2.logol.9f7e19bf-1824-493c-9643-02cb4ea1fbc4.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream2.logol.9f7e19bf-1824-493c-9643-02cb4ea1fbc4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream2.logol.9f7e19bf-1824-493c-9643-02cb4ea1fbc4.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/metacontrol.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/metacontrol.logol.ab5d5367-dce8-4648-afe5-40cff76f99f3.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/metacontrol.logol.ab5d5367-dce8-4648-afe5-40cff76f99f3.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/metacontrol.logol.ab5d5367-dce8-4648-afe5-40cff76f99f3.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/view_begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/view_begin.logol.756866a9-0ee5-45b2-a5fa-03586ab2bac4.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/view_begin.logol.756866a9-0ee5-45b2-a5fa-03586ab2bac4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/view_begin.logol.756866a9-0ee5-45b2-a5fa-03586ab2bac4.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/begin_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin_postpone.logol.08256161-65be-40c2-99e1-78665b812b60.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin_postpone.logol.08256161-65be-40c2-99e1-78665b812b60.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin_postpone.logol.08256161-65be-40c2-99e1-78665b812b60.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/complement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.20d67eb1-d031-4223-8b04-70a57be5623e.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.20d67eb1-d031-4223-8b04-70a57be5623e.reverse.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complement.logol.20d67eb1-d031-4223-8b04-70a57be5623e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complement.logol.20d67eb1-d031-4223-8b04-70a57be5623e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/protein.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/protein.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option protein called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/protein.logol.244a03aa-163c-46d8-9ad8-cb7da30cd46c.1-23.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/protein.logol.244a03aa-163c-46d8-9ad8-cb7da30cd46c.0-23-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/protein.logol.244a03aa-163c-46d8-9ad8-cb7da30cd46c.0-23-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/morphism_var.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism_var.logol.5a31a7a4-163b-4497-910f-d4997b1ad030.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism_var.logol.5a31a7a4-163b-4497-910f-d4997b1ad030.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism_var.logol.5a31a7a4-163b-4497-910f-d4997b1ad030.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.cfa7638f-faec-4a1b-8389-012676402133.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.cfa7638f-faec-4a1b-8389-012676402133.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.cfa7638f-faec-4a1b-8389-012676402133.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/cost_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/cost_postpone.logol.3f0c5d8a-b073-4a72-bab3-97c95bc8147c.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/cost_postpone.logol.3f0c5d8a-b073-4a72-bab3-97c95bc8147c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/cost_postpone.logol.3f0c5d8a-b073-4a72-bab3-97c95bc8147c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/call_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model.logol.b01df2a4-811b-44fe-9049-cc2c2fbcf747.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model.logol.b01df2a4-811b-44fe-9049-cc2c2fbcf747.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model.logol.b01df2a4-811b-44fe-9049-cc2c2fbcf747.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variablewithdistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance.logol.f4eedec8-dbe3-4b85-81b3-157b80b1eed3.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance.logol.f4eedec8-dbe3-4b85-81b3-157b80b1eed3.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance.logol.f4eedec8-dbe3-4b85-81b3-157b80b1eed3.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9/test/optimal.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR1)==>LOGOLVAR2%mydata%:{?"aaaa"},LOGOLVAR3%X1%:{#OPT[2,8]} [junit] mod1(LOGOLVAR4)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/optimal.lgd.08d21199-bea0-4ff2-b199-931e9041b074.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.lgd.08d21199-bea0-4ff2-b199-931e9041b074.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.lgd.08d21199-bea0-4ff2-b199-931e9041b074.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.lgd.08d21199-bea0-4ff2-b199-931e9041b074.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variablewitherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherror.logol.45de9a91-a4a9-46ac-a2d3-460faa78a29b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherror.logol.45de9a91-a4a9-46ac-a2d3-460faa78a29b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherror.logol.45de9a91-a4a9-46ac-a2d3-460faa78a29b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9/test/anyspacer.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR4)==>LOGOLVAR5%X1%:{@[0,20]},"ccc" [junit] mod1(LOGOLVAR6)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/anyspacer.lgd.25355d16-1adb-4243-9d8a-58c7db5ef5f0.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.lgd.25355d16-1adb-4243-9d8a-58c7db5ef5f0.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.lgd.25355d16-1adb-4243-9d8a-58c7db5ef5f0.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.lgd.25355d16-1adb-4243-9d8a-58c7db5ef5f0.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9/test/all.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR6)==>"ccc",.*,"ccc" [junit] mod1(LOGOLVAR7)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/all.lgd.301bb1fb-a532-41ff-b52e-db2b31e5a3db.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.lgd.301bb1fb-a532-41ff-b52e-db2b31e5a3db.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.lgd.301bb1fb-a532-41ff-b52e-db2b31e5a3db.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.lgd.301bb1fb-a532-41ff-b52e-db2b31e5a3db.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/repeat_any.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_any.logol.a937d93f-3938-4717-b3ed-5983f8444cf3.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_any.logol.a937d93f-3938-4717-b3ed-5983f8444cf3.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_any.logol.a937d93f-3938-4717-b3ed-5983f8444cf3.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/comment2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment2.logol.9916d6b1-2b8a-4f4e-ae16-dd87a89ddb38.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment2.logol.9916d6b1-2b8a-4f4e-ae16-dd87a89ddb38.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment2.logol.9916d6b1-2b8a-4f4e-ae16-dd87a89ddb38.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9/test/negcontent.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR7)==>"aaaa",! "cgta":{#[3,5]} [junit] mod1(LOGOLVAR8)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/negcontent.lgd.44e43a7a-153a-4331-987d-5a2ae0e66f88.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.lgd.44e43a7a-153a-4331-987d-5a2ae0e66f88.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.lgd.44e43a7a-153a-4331-987d-5a2ae0e66f88.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.lgd.44e43a7a-153a-4331-987d-5a2ae0e66f88.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/parent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror.logol.fead21f3-3836-4e5d-88db-7cadb7955aa4.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror.logol.fead21f3-3836-4e5d-88db-7cadb7955aa4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror.logol.fead21f3-3836-4e5d-88db-7cadb7955aa4.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/parent_exact.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_exact.logol.e38ba0f7-68c6-489c-a452-36b1099bcbd6.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_exact.logol.e38ba0f7-68c6-489c-a452-36b1099bcbd6.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_exact.logol.e38ba0f7-68c6-489c-a452-36b1099bcbd6.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/all.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.logol.7f224f0b-d5dd-4644-8527-cdd760fbef33.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.logol.7f224f0b-d5dd-4644-8527-cdd760fbef33.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.logol.7f224f0b-d5dd-4644-8527-cdd760fbef33.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variable_unknown.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_unknown.logol.713b5d87-cf5c-40c5-aa7f-cab8e0d66513.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_unknown.logol.713b5d87-cf5c-40c5-aa7f-cab8e0d66513.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_unknown.logol.713b5d87-cf5c-40c5-aa7f-cab8e0d66513.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/morphism.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.logol.5e89e6d3-62f9-4640-9546-60177a13f613.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.logol.5e89e6d3-62f9-4640-9546-60177a13f613.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.logol.5e89e6d3-62f9-4640-9546-60177a13f613.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/or_condition2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition2.logol.c124385b-17de-4205-8076-9eaa3fd8f077.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition2.logol.c124385b-17de-4205-8076-9eaa3fd8f077.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition2.logol.c124385b-17de-4205-8076-9eaa3fd8f077.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/comment.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment.logol.a228b168-fe3f-4534-9f1b-73262eb1660a.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment.logol.a228b168-fe3f-4534-9f1b-73262eb1660a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment.logol.a228b168-fe3f-4534-9f1b-73262eb1660a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9/test/variable.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR8)==>"aaa","acgt":{_LOGOLVAR9%R1%},?LOGOLVAR9%R1% [junit] mod1(LOGOLVAR10)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/variable.lgd.8710431c-4915-404b-bbec-aecd96db7a3f.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.lgd.8710431c-4915-404b-bbec-aecd96db7a3f.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.lgd.8710431c-4915-404b-bbec-aecd96db7a3f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.lgd.8710431c-4915-404b-bbec-aecd96db7a3f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/call_model2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model2.logol.c2c70112-cf3f-4f99-84e8-8d0de92ee82e.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model2.logol.c2c70112-cf3f-4f99-84e8-8d0de92ee82e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model2.logol.c2c70112-cf3f-4f99-84e8-8d0de92ee82e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/call_model3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model3.logol.1fef2526-0155-42a9-806a-faef0a1a6b1c.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model3.logol.1fef2526-0155-42a9-806a-faef0a1a6b1c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model3.logol.1fef2526-0155-42a9-806a-faef0a1a6b1c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/call_model4.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model4.logol.fc904814-5104-448c-bb37-ecd11d138425.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model4.logol.fc904814-5104-448c-bb37-ecd11d138425.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model4.logol.fc904814-5104-448c-bb37-ecd11d138425.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/repeat0.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat0.logol.5b558b3d-7273-4625-afbf-81a64badb7e5.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat0.logol.5b558b3d-7273-4625-afbf-81a64badb7e5.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat0.logol.5b558b3d-7273-4625-afbf-81a64badb7e5.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/reverse.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/reverse.logol.c3373f31-91d3-44a3-9755-f92227967930.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/reverse.logol.c3373f31-91d3-44a3-9755-f92227967930.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/reverse.logol.c3373f31-91d3-44a3-9755-f92227967930.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variable_postcontent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent_witherror.logol.781ee822-efa9-40bc-9e70-9d8563b2ff20.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent_witherror.logol.781ee822-efa9-40bc-9e70-9d8563b2ff20.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent_witherror.logol.781ee822-efa9-40bc-9e70-9d8563b2ff20.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variablewitherroranddistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherroranddistance.logol.e3d1f67b-1daa-426e-966b-2edf8db93767.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherroranddistance.logol.e3d1f67b-1daa-426e-966b-2edf8db93767.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherroranddistance.logol.e3d1f67b-1daa-426e-966b-2edf8db93767.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/complex.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complex.logol.e2ae134e-dafe-4193-b557-710eaebb8ada.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complex.logol.e2ae134e-dafe-4193-b557-710eaebb8ada.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complex.logol.e2ae134e-dafe-4193-b557-710eaebb8ada.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variablewithdistance2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance2.logol.4ed5f1e9-f769-405d-8ebf-fe675d6204a8.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance2.logol.4ed5f1e9-f769-405d-8ebf-fe675d6204a8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance2.logol.4ed5f1e9-f769-405d-8ebf-fe675d6204a8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variable_postcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent.logol.de77523c-addc-4243-8161-65e00bc0e9c5.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent.logol.de77523c-addc-4243-8161-65e00bc0e9c5.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent.logol.de77523c-addc-4243-8161-65e00bc0e9c5.0-41-all.xml [junit] cgttttgggg [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/multiple_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/multiple_model.logol.43851e1b-2776-4dd7-b610-e7640ca5ae67.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/multiple_model.logol.43851e1b-2776-4dd7-b610-e7640ca5ae67.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/multiple_model.logol.43851e1b-2776-4dd7-b610-e7640ca5ae67.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.0f7c3b82-91de-4127-9934-4e8168b49a87.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.0f7c3b82-91de-4127-9934-4e8168b49a87.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.0f7c3b82-91de-4127-9934-4e8168b49a87.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.0f7c3b82-91de-4127-9934-4e8168b49a87.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9/test/begin.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR10)==>"aaaa",.*,LOGOLVAR11%X1%:{@[10,12],#[2,8]} [junit] mod1(LOGOLVAR12)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/begin.lgd.604f4c8f-392e-4b78-8a2a-0a7278042240.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.lgd.604f4c8f-392e-4b78-8a2a-0a7278042240.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.lgd.604f4c8f-392e-4b78-8a2a-0a7278042240.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.lgd.604f4c8f-392e-4b78-8a2a-0a7278042240.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.31a10382-55fa-43d7-b6a6-043ca7ecb873.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.31a10382-55fa-43d7-b6a6-043ca7ecb873.reverse.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.31a10382-55fa-43d7-b6a6-043ca7ecb873.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.31a10382-55fa-43d7-b6a6-043ca7ecb873.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/mycost.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/mycost.logol.71afeda3-57eb-496d-8cf9-87450c6cc470.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/mycost.logol.71afeda3-57eb-496d-8cf9-87450c6cc470.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/mycost.logol.71afeda3-57eb-496d-8cf9-87450c6cc470.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9/test/morphism.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR12)==>"aaa",+"wc" "tgca" [junit] mod1(LOGOLVAR13)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/morphism.lgd.6e63ff93-aa83-4df9-80ac-bdf470da58b0.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.lgd.6e63ff93-aa83-4df9-80ac-bdf470da58b0.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.lgd.6e63ff93-aa83-4df9-80ac-bdf470da58b0.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.lgd.6e63ff93-aa83-4df9-80ac-bdf470da58b0.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/repeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat.logol.b27b87cf-af63-4952-86ac-be8636d19ba6.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat.logol.b27b87cf-af63-4952-86ac-be8636d19ba6.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat.logol.b27b87cf-af63-4952-86ac-be8636d19ba6.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/parent_witherror2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror2.logol.70fbf190-f5c7-4ed5-888d-e264d6671ccb.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror2.logol.70fbf190-f5c7-4ed5-888d-e264d6671ccb.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror2.logol.70fbf190-f5c7-4ed5-888d-e264d6671ccb.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/external2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external2.logol.d21d648f-8b75-44e8-b3f1-01583af9399f.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external2.logol.d21d648f-8b75-44e8-b3f1-01583af9399f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external2.logol.d21d648f-8b75-44e8-b3f1-01583af9399f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/repeat_interspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_interspacer.logol.a357829e-1bd9-4a10-8287-94e2026023ab.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_interspacer.logol.a357829e-1bd9-4a10-8287-94e2026023ab.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_interspacer.logol.a357829e-1bd9-4a10-8287-94e2026023ab.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/notview.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notview.logol.5b30833a-3ab1-431f-814e-9a49b6a9450e.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notview.logol.5b30833a-3ab1-431f-814e-9a49b6a9450e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notview.logol.5b30833a-3ab1-431f-814e-9a49b6a9450e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/repeat_anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_anyspacer.logol.cdf5ca1c-a46b-4cfd-978b-0c69638a5c86.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_anyspacer.logol.cdf5ca1c-a46b-4cfd-978b-0c69638a5c86.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_anyspacer.logol.cdf5ca1c-a46b-4cfd-978b-0c69638a5c86.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/notrepeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notrepeat.logol.6ad7d348-f4ff-473f-85ef-37bedf1a6175.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notrepeat.logol.6ad7d348-f4ff-473f-85ef-37bedf1a6175.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notrepeat.logol.6ad7d348-f4ff-473f-85ef-37bedf1a6175.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9/test/or_condition.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition.logol.4eaab19d-4385-44fd-9efc-c3db5c44aa5d.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition.logol.4eaab19d-4385-44fd-9efc-c3db5c44aa5d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition.logol.4eaab19d-4385-44fd-9efc-c3db5c44aa5d.0-41-all.xml [junit] ------------- ---------------- --------------- [junit] ------------- Standard Error ----------------- [junit] log4j:ERROR setFile(null,true) call failed. [junit] java.io.FileNotFoundException: /var/log/logol/logol.log (No such file or directory) [junit] at java.base/java.io.FileOutputStream.open0(Native Method) [junit] at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298) [junit] at java.base/java.io.FileOutputStream.(FileOutputStream.java:237) [junit] at java.base/java.io.FileOutputStream.(FileOutputStream.java:158) [junit] at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) [junit] at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) [junit] at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) [junit] at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) [junit] at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) [junit] at org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) [junit] at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) [junit] at org.apache.log4j.LogManager.(LogManager.java:127) [junit] at org.apache.log4j.Logger.getLogger(Logger.java:117) [junit] at org.irisa.genouest.logol.test.GrammarTest.(Unknown Source) [junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) [junit] at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [junit] at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490) [junit] at org.junit.runners.BlockJUnit4ClassRunner.createTest(BlockJUnit4ClassRunner.java:250) [junit] at org.junit.runners.BlockJUnit4ClassRunner.createTest(BlockJUnit4ClassRunner.java:260) [junit] at org.junit.runners.BlockJUnit4ClassRunner$2.runReflectiveCall(BlockJUnit4ClassRunner.java:309) [junit] at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) [junit] at org.junit.runners.BlockJUnit4ClassRunner.methodBlock(BlockJUnit4ClassRunner.java:311) [junit] at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100) [junit] at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366) [junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103) [junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63) [junit] at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) [junit] at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) [junit] at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) [junit] at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) [junit] at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) [junit] at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) [junit] at org.junit.runners.ParentRunner.run(ParentRunner.java:413) [junit] at junit.framework.JUnit4TestAdapter.run(JUnit4TestAdapter.java:50) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:535) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:1197) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:1042) [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] ------------- ---------------- --------------- [junit] Testcase: testAmbiguous(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch2(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch3(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is BUILD SUCCESSFUL Total time: 2 minutes 39 seconds mkdir -p test/tmp test/results ant -f build.xml doc Buildfile: /build/reproducible-path/logol-1.7.9/build.xml [taskdef] Could not load definitions from resource tasks.properties. 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Illegal parameter number in definition of \tags. [exec] [exec] 1 [exec] l.510 {\end{description}\end{quote}} [exec] [exec] ? [exec] ! Emergency stop. [exec] [exec] 1 [exec] l.510 {\end{description}\end{quote}} [exec] [exec] ! ==> Fatal error occurred, no output PDF file produced! [exec] Transcript written on logol.log. [exec] mv: cannot stat 'logol.pdf': No such file or directory [exec] Result: 1 BUILD SUCCESSFUL Total time: 15 seconds rm -f prolog/process.so chrpath -d prolog/logol.exe chrpath -d prolog/preanalyse.exe make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/logol-1.7.9' dh_install rm -f debian/logol/usr/share/logol/prolog/*.c rm -f debian/logol/usr/share/logol/prolog/*.exe rm -f debian/logol/usr/share/logol/prolog/logol.properties rm -f debian/logol/usr/share/logol/tools/*.keep_old_script if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi if [ ! -e debian/logol-bin/usr/share/logol/prolog ]; then mkdir -p debian/logol-bin/usr/share/logol/prolog; fi ln -s /usr/lib/swi-prolog/lib/arm-linux/process.so debian/logol-bin/usr/share/logol/prolog/process.so make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/logol-1.7.9' rm -f test/tmp/* rm -f test/results/* dh_installexamples make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9' dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dwz: debian/logol-bin/usr/lib/logol/logol.exe: .debug_info section not present dwz: debian/logol-bin/usr/lib/logol/preanalyse.exe: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/logol-1.7.9' dh_strip -Xlogol.exe -Xpreanalyse.exe make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9' dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package logol: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'logol-bin' in '../logol-bin_1.7.9-3_armhf.deb'. dpkg-deb: building package 'logol' in '../logol_1.7.9-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../logol_1.7.9-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11428 and its subdirectories I: Current time: Sat Jan 6 23:50:09 -12 2024 I: pbuilder-time-stamp: 1704628209