I: pbuilder: network access will be disabled during build
I: Current time: Mon Jul 12 22:39:07 +14 2021
I: pbuilder-time-stamp: 1626079147
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [peptidebuilder_1.1.0-2.dsc]
I: copying [./peptidebuilder_1.1.0.orig.tar.gz]
I: copying [./peptidebuilder_1.1.0-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.r2odr8j1/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 7 06:56:41 2020 +14
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./peptidebuilder_1.1.0-2.dsc
dpkg-source: info: extracting peptidebuilder in peptidebuilder-1.1.0
dpkg-source: info: unpacking peptidebuilder_1.1.0.orig.tar.gz
dpkg-source: info: unpacking peptidebuilder_1.1.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-paths-with-os.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/9927/tmp/hooks/D01_modify_environment starting
debug: Running on virt32b.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/9927/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/9927/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
BASH_VERSION='5.1.4(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=armhf
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4'
DIRSTACK=()
DISTRIBUTION=
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=arm
HOST_ARCH=armhf
IFS='
'
INVOCATION_ID=f3a57ea138784712bedd54800d7ba204
LANG=C
LANGUAGE=it_CH:it
LC_ALL=C
MACHTYPE=arm-unknown-linux-gnueabihf
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnueabihf
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=9927
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ZKvcF1S8vV/pbuilderrc_Rlaa --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ZKvcF1S8vV/b2 --logfile b2/build.log --extrapackages usrmerge peptidebuilder_1.1.0-2.dsc'
SUDO_GID=112
SUDO_UID=106
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://10.0.0.15:8000/
I: uname -a
Linux i-capture-the-hostname 5.10.0-7-armmp-lpae #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux
I: ls -l /bin
total 3580
-rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash
-rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2
-rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore
-rwxr-xr-x 1 root root 26668 Sep 23 2020 cat
-rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp
-rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod
-rwxr-xr-x 1 root root 43112 Sep 23 2020 chown
-rwxr-xr-x 1 root root 92616 Sep 23 2020 cp
-rwxr-xr-x 1 root root 75524 Dec 11 2020 dash
-rwxr-xr-x 1 root root 75880 Sep 23 2020 date
-rwxr-xr-x 1 root root 55436 Sep 23 2020 dd
-rwxr-xr-x 1 root root 59912 Sep 23 2020 df
-rwxr-xr-x 1 root root 96764 Sep 23 2020 dir
-rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg
lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname
-rwxr-xr-x 1 root root 22508 Sep 23 2020 echo
-rwxr-xr-x 1 root root 28 Nov 10 2020 egrep
-rwxr-xr-x 1 root root 22496 Sep 23 2020 false
-rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep
-rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt
-rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount
-rwxr-xr-x 1 root root 124508 Nov 10 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip
-rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe
-rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip
-rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname
-rwxr-xr-x 1 root root 43180 Sep 23 2020 ln
-rwxr-xr-x 1 root root 35068 Feb 8 2020 login
-rwxr-xr-x 1 root root 96764 Sep 23 2020 ls
-rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk
-rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir
-rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod
-rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp
-rwxr-xr-x 1 root root 34408 Feb 8 04:38 more
-rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount
-rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint
-rwxr-xr-x 1 root root 88524 Sep 23 2020 mv
lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd
lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash
-rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink
-rwxr-xr-x 1 root root 43104 Sep 23 2020 rm
-rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir
-rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts
-rwxr-xr-x 1 root root 76012 Dec 23 2018 sed
lrwxrwxrwx 1 root root 4 Jul 12 22:39 sh -> bash
lrwxrwxrwx 1 root root 4 Jul 9 23:26 sh.distrib -> dash
-rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep
-rwxr-xr-x 1 root root 55360 Sep 23 2020 stty
-rwsr-xr-x 1 root root 46704 Feb 8 04:38 su
-rwxr-xr-x 1 root root 22532 Sep 23 2020 sync
-rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar
-rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile
-rwxr-xr-x 1 root root 67696 Sep 23 2020 touch
-rwxr-xr-x 1 root root 22496 Sep 23 2020 true
-rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount
-rwxr-xr-x 1 root root 22520 Sep 23 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress
-rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir
-rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl
lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat
-rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp
-rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff
-rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep
-rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce
-rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep
-rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless
-rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore
-rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew
I: user script /srv/workspace/pbuilder/9927/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-biopython, python3-pytest, python3-pytest-cov
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19398 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however:
Package python3-pytest-cov is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} liblapack3{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-biopython{a} python3-cov-core{a} python3-coverage{a} python3-distutils{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-nose2{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3-six{a} python3-toml{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments python3-renderpm wget
0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
Need to get 34.7 MB of archives. After unpacking 129 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB]
Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB]
Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB]
Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB]
Get: 6 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get: 7 http://deb.debian.org/debian bullseye/main armhf libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB]
Get: 8 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB]
Get: 9 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB]
Get: 10 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB]
Get: 11 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get: 12 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB]
Get: 13 http://deb.debian.org/debian bullseye/main armhf mailcap all 3.69 [31.7 kB]
Get: 14 http://deb.debian.org/debian bullseye/main armhf mime-support all 3.66 [10.9 kB]
Get: 15 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB]
Get: 16 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB]
Get: 17 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB]
Get: 18 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB]
Get: 19 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB]
Get: 20 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get: 21 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get: 22 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get: 23 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get: 24 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get: 25 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB]
Get: 26 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB]
Get: 27 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB]
Get: 28 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB]
Get: 29 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB]
Get: 30 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 31 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB]
Get: 32 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB]
Get: 33 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get: 34 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB]
Get: 35 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 36 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 37 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get: 38 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get: 39 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get: 40 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB]
Get: 41 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB]
Get: 42 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB]
Get: 43 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB]
Get: 44 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB]
Get: 45 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 46 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 47 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB]
Get: 48 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB]
Get: 49 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB]
Get: 50 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB]
Get: 51 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB]
Get: 52 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB]
Get: 53 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB]
Get: 54 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get: 55 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB]
Get: 56 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB]
Get: 57 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB]
Get: 58 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB]
Get: 59 http://deb.debian.org/debian bullseye/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get: 60 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB]
Get: 61 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB]
Get: 62 http://deb.debian.org/debian bullseye/main armhf libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get: 63 http://deb.debian.org/debian bullseye/main armhf libjs-jquery-metadata all 12-3 [7660 B]
Get: 64 http://deb.debian.org/debian bullseye/main armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-1 [185 kB]
Get: 65 http://deb.debian.org/debian bullseye/main armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-1.1 [6412 B]
Get: 66 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB]
Get: 67 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB]
Get: 68 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1 [226 kB]
Get: 69 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1 [271 kB]
Get: 70 http://deb.debian.org/debian bullseye/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.7 kB]
Get: 71 http://deb.debian.org/debian bullseye/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.2 kB]
Get: 72 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB]
Get: 73 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get: 74 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get: 75 http://deb.debian.org/debian bullseye/main armhf python3-all armhf 3.9.2-3 [1056 B]
Get: 76 http://deb.debian.org/debian bullseye/main armhf python3-attr all 20.3.0-1 [52.9 kB]
Get: 77 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB]
Get: 78 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB]
Get: 79 http://deb.debian.org/debian bullseye/main armhf python3-reportlab-accel armhf 3.5.59-2 [37.4 kB]
Get: 80 http://deb.debian.org/debian bullseye/main armhf python3-pil armhf 8.1.2+dfsg-0.2 [414 kB]
Get: 81 http://deb.debian.org/debian bullseye/main armhf python3-reportlab all 3.5.59-2 [575 kB]
Get: 82 http://deb.debian.org/debian bullseye/main armhf python3-biopython armhf 1.78+dfsg-4 [1383 kB]
Get: 83 http://deb.debian.org/debian bullseye/main armhf python3-coverage armhf 5.1+dfsg.1-2+b2 [167 kB]
Get: 84 http://deb.debian.org/debian bullseye/main armhf python3-six all 1.16.0-1 [17.1 kB]
Get: 85 http://deb.debian.org/debian bullseye/main armhf python3-nose2 all 0.9.2-1 [94.1 kB]
Get: 86 http://deb.debian.org/debian bullseye/main armhf python3-cov-core all 1.15.0-3 [7528 B]
Get: 87 http://deb.debian.org/debian bullseye/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB]
Get: 88 http://deb.debian.org/debian bullseye/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get: 89 http://deb.debian.org/debian bullseye/main armhf python3-importlib-metadata all 1.6.0-2 [10.3 kB]
Get: 90 http://deb.debian.org/debian bullseye/main armhf python3-iniconfig all 1.1.1-1 [6308 B]
Get: 91 http://deb.debian.org/debian bullseye/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get: 92 http://deb.debian.org/debian bullseye/main armhf python3-packaging all 20.9-2 [33.5 kB]
Get: 93 http://deb.debian.org/debian bullseye/main armhf python3-pluggy all 0.13.0-6 [22.3 kB]
Get: 94 http://deb.debian.org/debian bullseye/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get: 95 http://deb.debian.org/debian bullseye/main armhf python3-toml all 0.10.1-1 [15.9 kB]
Get: 96 http://deb.debian.org/debian bullseye/main armhf python3-pytest all 6.0.2-2 [211 kB]
Get: 97 http://deb.debian.org/debian bullseye/main armhf python3-pytest-cov all 2.10.1-1 [23.5 kB]
Get: 98 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB]
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Unpacking python3-pytest (6.0.2-2) ...
Selecting previously unselected package python3-pytest-cov.
Preparing to unpack .../76-python3-pytest-cov_2.10.1-1_all.deb ...
Unpacking python3-pytest-cov (2.10.1-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../77-python3-setuptools_52.0.0-4_all.deb ...
Unpacking python3-setuptools (52.0.0-4) ...
Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up liblcms2-2:armhf (2.12~rc1-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up bsdextrautils (2.36.1-7) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.3.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.7-1) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-1.1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up autopoint (0.21-4) ...
Setting up libwebp6:armhf (0.6.1-2.1) ...
Setting up libgfortran5:armhf (10.2.1-6) ...
Setting up libmd0:armhf (1.0.3-3) ...
Setting up sensible-utils (0.0.14) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libtiff5:armhf (4.2.0-1) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ...
Setting up libwebpmux3:armhf (0.6.1-2.1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up mailcap (3.69) ...
Setting up libelf1:armhf (0.183-1) ...
Setting up readline-common (8.1-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.7) ...
Setting up libfile-stripnondeterminism-perl (1.11.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-15) ...
Setting up libwebpdemux2:armhf (0.6.1-2.1) ...
Setting up libreadline8:armhf (8.1-1) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
Setting up libjs-jquery-metadata (12-3) ...
Setting up libjs-jquery-isonscreen (1.2.0-1.1) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.11.0-1) ...
Setting up dwz (0.13+20210201-1) ...
Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up libpython3.9-stdlib:armhf (3.9.2-1) ...
Setting up libpython3-stdlib:armhf (3.9.2-3) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up python3.9 (3.9.2-1) ...
Setting up debhelper (13.3.4) ...
Setting up python3 (3.9.2-3) ...
Setting up python3-six (1.16.0-1) ...
Setting up python3-pil:armhf (8.1.2+dfsg-0.2) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up python3-reportlab-accel:armhf (3.5.59-2) ...
Setting up python3-toml (0.10.1-1) ...
Setting up python3-reportlab (3.5.59-2) ...
Setting up python3-lib2to3 (3.9.2-1) ...
Setting up python3-pkg-resources (52.0.0-4) ...
Setting up python3-distutils (3.9.2-1) ...
Setting up dh-python (4.20201102+nmu1) ...
Setting up python3-more-itertools (4.2.0-3) ...
Setting up python3-iniconfig (1.1.1-1) ...
Setting up python3-attr (20.3.0-1) ...
Setting up python3-setuptools (52.0.0-4) ...
Setting up python3-py (1.10.0-1) ...
Setting up python3-all (3.9.2-3) ...
Setting up python3-coverage (5.1+dfsg.1-2+b2) ...
Setting up python3-nose2 (0.9.2-1) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-packaging (20.9-2) ...
Setting up python3-numpy (1:1.19.5-1) ...
Setting up python3-biopython (1.78+dfsg-4) ...
Setting up python3-importlib-metadata (1.6.0-2) ...
Setting up python3-cov-core (1.15.0-3) ...
Setting up python3-pluggy (0.13.0-6) ...
Setting up python3-pytest (6.0.2-2) ...
Setting up python3-pytest-cov (2.10.1-1) ...
Processing triggers for libc-bin (2.31-12) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl
The following NEW packages will be installed:
libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge
0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
Need to get 59.5 kB of archives.
After this operation, 157 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B]
Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B]
Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB]
Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 59.5 kB in 0s (1101 kB/s)
Selecting previously unselected package libnumber-compare-perl.
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(Reading database ... 24772 files and directories currently installed.)
Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ...
Unpacking libnumber-compare-perl (0.03-1.1) ...
Selecting previously unselected package libtext-glob-perl.
Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ...
Unpacking libtext-glob-perl (0.11-1) ...
Selecting previously unselected package libfile-find-rule-perl.
Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ...
Unpacking libfile-find-rule-perl (0.34-1) ...
Selecting previously unselected package usrmerge.
Preparing to unpack .../archives/usrmerge_25_all.deb ...
Unpacking usrmerge (25) ...
Setting up libtext-glob-perl (0.11-1) ...
Setting up libnumber-compare-perl (0.03-1.1) ...
Setting up libfile-find-rule-perl (0.34-1) ...
Setting up usrmerge (25) ...
The system has been successfully converted.
Processing triggers for man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
I: Building the package
hostname: Name or service not known
I: Running cd /build/peptidebuilder-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../peptidebuilder_1.1.0-2_source.changes
dpkg-buildpackage: info: source package peptidebuilder
dpkg-buildpackage: info: source version 1.1.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Nilesh Patra <npatra974@gmail.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from peptidebuilder-1.1.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
install -d /build/peptidebuilder-1.1.0/debian/.debhelper/generated/_source/home
pybuild --clean --test-pytest -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/build/peptidebuilder-1.1.0/.pybuild/cpython3_3.9_peptidebuilder/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-peptidebuilder.substvars debian/files
rm -fr -- debian/python3-peptidebuilder/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
install -d /build/peptidebuilder-1.1.0/debian/.debhelper/generated/_source/home
pybuild --configure --test-pytest -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
pybuild --build --test-pytest -i python{version} -p 3.9
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.9_peptidebuilder/build/PeptideBuilder
copying PeptideBuilder/PeptideBuilder.py -> /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.9_peptidebuilder/build/PeptideBuilder
copying PeptideBuilder/__init__.py -> /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.9_peptidebuilder/build/PeptideBuilder
copying PeptideBuilder/Geometry.py -> /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.9_peptidebuilder/build/PeptideBuilder
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/peptidebuilder-1.1.0'
PYTHONPATH=$(pwd) pytest-3
============================= test session starts ==============================
platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /build/peptidebuilder-1.1.0, configfile: pytest.ini, testpaths: tests
plugins: cov-2.10.1
collecting ... collected 28 items
tests/test_Geometry.py::test_geometry_A PASSED [ 3%]
tests/test_Geometry.py::test_geometry_C PASSED [ 7%]
tests/test_Geometry.py::test_geometry_D PASSED [ 10%]
tests/test_Geometry.py::test_geometry_E PASSED [ 14%]
tests/test_Geometry.py::test_geometry_F PASSED [ 17%]
tests/test_Geometry.py::test_geometry_G PASSED [ 21%]
tests/test_Geometry.py::test_geometry_H PASSED [ 25%]
tests/test_Geometry.py::test_geometry_I PASSED [ 28%]
tests/test_Geometry.py::test_geometry_K PASSED [ 32%]
tests/test_Geometry.py::test_geometry_L PASSED [ 35%]
tests/test_Geometry.py::test_geometry_M PASSED [ 39%]
tests/test_Geometry.py::test_geometry_N PASSED [ 42%]
tests/test_Geometry.py::test_geometry_P PASSED [ 46%]
tests/test_Geometry.py::test_geometry_Q PASSED [ 50%]
tests/test_Geometry.py::test_geometry_R PASSED [ 53%]
tests/test_Geometry.py::test_geometry_S PASSED [ 57%]
tests/test_Geometry.py::test_geometry_T PASSED [ 60%]
tests/test_Geometry.py::test_geometry_V PASSED [ 64%]
tests/test_Geometry.py::test_geometry_W PASSED [ 67%]
tests/test_Geometry.py::test_geometry_Y PASSED [ 71%]
tests/test_PeptideBuilder.py::test_add_residue PASSED [ 75%]
tests/test_PeptideBuilder.py::test_add_residue2 PASSED [ 78%]
tests/test_PeptideBuilder.py::test_make_structure_from_geos PASSED [ 82%]
tests/test_PeptideBuilder.py::test_make_extended_structure PASSED [ 85%]
tests/test_PeptideBuilder.py::test_make_structure_from_geos2 PASSED [ 89%]
tests/test_PeptideBuilder.py::test_make_structure PASSED [ 92%]
tests/test_PeptideBuilder.py::test_make_structure2 PASSED [ 96%]
tests/test_PeptideBuilder.py::test_add_terminal_OXT PASSED [100%]
=============================== warnings summary ===============================
tests/test_PeptideBuilder.py: 10 warnings
/usr/lib/python3/dist-packages/Bio/PDB/PDBParser.py:395: PDBConstructionWarning: Ignoring unrecognized record 'TER' at line 168
warnings.warn(
tests/test_PeptideBuilder.py: 10 warnings
/usr/lib/python3/dist-packages/Bio/PDB/PDBParser.py:395: PDBConstructionWarning: Ignoring unrecognized record 'END' at line 169
warnings.warn(
tests/test_PeptideBuilder.py::test_add_terminal_OXT
/usr/lib/python3/dist-packages/Bio/PDB/PDBParser.py:395: PDBConstructionWarning: Ignoring unrecognized record 'END' at line 170
warnings.warn(
-- Docs: https://docs.pytest.org/en/stable/warnings.html
----------- coverage: platform linux, python 3.9.2-final-0 -----------
Name Stmts Miss Cover
------------------------------------------------------
PeptideBuilder/Geometry.py 846 204 76%
PeptideBuilder/PeptideBuilder.py 869 3 99%
PeptideBuilder/__init__.py 3 0 100%
------------------------------------------------------
TOTAL 1718 207 88%
======================= 28 passed, 21 warnings in 6.08s ========================
make[1]: Leaving directory '/build/peptidebuilder-1.1.0'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
rm -f -- debian/python3-peptidebuilder.substvars
rm -fr -- debian/.debhelper/generated/python3-peptidebuilder/ debian/python3-peptidebuilder/ debian/tmp/
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/peptidebuilder-1.1.0'
dh_auto_install
install -d /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder
pybuild --install --test-pytest -i python{version} -p 3.9 --dest-dir /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder
I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder
running install
running build
running build_py
running install_lib
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages/PeptideBuilder
copying /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.9_peptidebuilder/build/PeptideBuilder/PeptideBuilder.py -> /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages/PeptideBuilder
copying /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.9_peptidebuilder/build/PeptideBuilder/__init__.py -> /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages/PeptideBuilder
copying /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.9_peptidebuilder/build/PeptideBuilder/Geometry.py -> /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages/PeptideBuilder
byte-compiling /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages/PeptideBuilder/PeptideBuilder.py to PeptideBuilder.cpython-39.pyc
byte-compiling /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages/PeptideBuilder/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages/PeptideBuilder/Geometry.py to Geometry.cpython-39.pyc
running install_egg_info
running egg_info
creating PeptideBuilder.egg-info
writing PeptideBuilder.egg-info/PKG-INFO
writing dependency_links to PeptideBuilder.egg-info/dependency_links.txt
writing requirements to PeptideBuilder.egg-info/requires.txt
writing top-level names to PeptideBuilder.egg-info/top_level.txt
writing manifest file 'PeptideBuilder.egg-info/SOURCES.txt'
reading manifest file 'PeptideBuilder.egg-info/SOURCES.txt'
writing manifest file 'PeptideBuilder.egg-info/SOURCES.txt'
Copying PeptideBuilder.egg-info to /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages/PeptideBuilder-1.1.0.egg-info
Skipping SOURCES.txt
running install_scripts
find debian/python3-peptidebuilder/usr/lib/ -name .coverage -delete
make[1]: Leaving directory '/build/peptidebuilder-1.1.0'
dh_installdocs -O--buildsystem=pybuild
install -d debian/python3-peptidebuilder/usr/share/doc/python3-peptidebuilder
install -d debian/.debhelper/generated/python3-peptidebuilder
install -p -m0644 debian/copyright debian/python3-peptidebuilder/usr/share/doc/python3-peptidebuilder/copyright
dh_installchangelogs -O--buildsystem=pybuild
install -p -m0644 debian/changelog debian/python3-peptidebuilder/usr/share/doc/python3-peptidebuilder/changelog.Debian
dh_python3 -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 4.20201102+nmu1
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9)
D: dh_python3 debhelper:152: source=peptidebuilder, binary packages=['python3-peptidebuilder']
D: dh_python3 dh_python3:183: processing package python3-peptidebuilder...
D: dh_python3 fs:49: moving files from debian/python3-peptidebuilder/usr/lib/python3.9/dist-packages to debian/python3-peptidebuilder/usr/lib/python3/dist-packages/
D: dh_python3 fs:260: package python3-peptidebuilder details = {'requires.txt': {'debian/python3-peptidebuilder/usr/lib/python3/dist-packages/PeptideBuilder-1.1.0.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-peptidebuilder
D: dh_python3 pydist:142: trying to find dependency for Biopython (python=None)
D: dh_python3 depends:275: D={'python3:any', 'python3-biopython'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
cd debian/python3-peptidebuilder
chmod a-x usr/share/doc/python3-peptidebuilder/changelog.Debian
gzip -9nf usr/share/doc/python3-peptidebuilder/changelog.Debian
cd '/build/peptidebuilder-1.1.0'
dh_fixperms -O--buildsystem=pybuild
find debian/python3-peptidebuilder ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-peptidebuilder/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-peptidebuilder/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-peptidebuilder/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-peptidebuilder -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-peptidebuilder/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
install -d debian/python3-peptidebuilder/DEBIAN
printf '#!/bin/sh\nset -e\n' > debian/python3-peptidebuilder/DEBIAN/postinst
cat debian/python3-peptidebuilder.postinst.debhelper >> debian/python3-peptidebuilder/DEBIAN/postinst
chmod 0755 -- debian/python3-peptidebuilder/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-peptidebuilder/DEBIAN/prerm
cat debian/python3-peptidebuilder.prerm.debhelper >> debian/python3-peptidebuilder/DEBIAN/prerm
chmod 0755 -- debian/python3-peptidebuilder/DEBIAN/prerm
dh_gencontrol -O--buildsystem=pybuild
echo misc:Depends= >> debian/python3-peptidebuilder.substvars
echo misc:Pre-Depends= >> debian/python3-peptidebuilder.substvars
dpkg-gencontrol -ppython3-peptidebuilder -ldebian/changelog -Tdebian/python3-peptidebuilder.substvars -Pdebian/python3-peptidebuilder
chmod 0644 -- debian/python3-peptidebuilder/DEBIAN/control
dh_md5sums -O--buildsystem=pybuild
cd debian/python3-peptidebuilder >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-peptidebuilder/DEBIAN/md5sums
dh_builddeb -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/python3-peptidebuilder ..
dpkg-deb: building package 'python3-peptidebuilder' in '../python3-peptidebuilder_1.1.0-2_all.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../peptidebuilder_1.1.0-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-source: info: using options from peptidebuilder-1.1.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/9927/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/9927/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/9927 and its subdirectories
I: Current time: Mon Jul 12 22:40:55 +14 2021
I: pbuilder-time-stamp: 1626079255