I: pbuilder: network access will be disabled during build
I: Current time: Tue Jul 20 21:07:08 -12 2021
I: pbuilder-time-stamp: 1626858428
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [plast_2.3.2+dfsg-7.dsc]
I: copying [./plast_2.3.2+dfsg.orig.tar.xz]
I: copying [./plast_2.3.2+dfsg-7.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.FxPL9c2Z/trustedkeys.kbx': General error
gpgv: Signature made Sat Jan 30 22:25:45 2021 -12
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./plast_2.3.2+dfsg-7.dsc
dpkg-source: info: extracting plast in plast-2.3.2+dfsg
dpkg-source: info: unpacking plast_2.3.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking plast_2.3.2+dfsg-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_pcre.patch
dpkg-source: info: applying adapt_auto_test_script.sh
dpkg-source: info: applying no_msse3.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying simde.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/31186/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='55a85cdc095d40fdadb81688b517d22b'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='31186'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.IuWqlnfbG5/pbuilderrc_NBuN --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.IuWqlnfbG5/b1 --logfile b1/build.log plast_2.3.2+dfsg-7.dsc'
SUDO_GID='114'
SUDO_UID='108'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:8000/'
I: uname -a
Linux virt64a 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux
I: ls -l /bin
total 3580
-rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 26668 Sep 22 2020 cat
-rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 43112 Sep 22 2020 chown
-rwxr-xr-x 1 root root 92616 Sep 22 2020 cp
-rwxr-xr-x 1 root root 75524 Dec 10 2020 dash
-rwxr-xr-x 1 root root 75880 Sep 22 2020 date
-rwxr-xr-x 1 root root 55436 Sep 22 2020 dd
-rwxr-xr-x 1 root root 59912 Sep 22 2020 df
-rwxr-xr-x 1 root root 96764 Sep 22 2020 dir
-rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg
lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
-rwxr-xr-x 1 root root 22508 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
-rwxr-xr-x 1 root root 22496 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
-rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt
-rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount
-rwxr-xr-x 1 root root 124508 Nov 9 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip
-rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe
-rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip
-rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname
-rwxr-xr-x 1 root root 43180 Sep 22 2020 ln
-rwxr-xr-x 1 root root 35068 Feb 7 2020 login
-rwxr-xr-x 1 root root 96764 Sep 22 2020 ls
-rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk
-rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 34408 Feb 7 02:38 more
-rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount
-rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint
-rwxr-xr-x 1 root root 88524 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash
-rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 43104 Sep 22 2020 rm
-rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Jul 18 21:25 sh -> dash
-rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 55360 Sep 22 2020 stty
-rwsr-xr-x 1 root root 46704 Feb 7 02:38 su
-rwxr-xr-x 1 root root 22532 Sep 22 2020 sync
-rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar
-rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 67696 Sep 22 2020 touch
-rwxr-xr-x 1 root root 22496 Sep 22 2020 true
-rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount
-rwxr-xr-x 1 root root 22520 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress
-rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl
lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat
-rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp
-rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce
-rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep
-rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless
-rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore
-rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew
I: user script /srv/workspace/pbuilder/31186/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, libpcre3-dev, default-jdk, libsimde-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19398 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on libpcre3-dev; however:
Package libpcre3-dev is not installed.
pbuilder-satisfydepends-dummy depends on default-jdk; however:
Package default-jdk is not installed.
pbuilder-satisfydepends-dummy depends on libsimde-dev; however:
Package libsimde-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cmake{a} cmake-data{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} java-common{a} libarchive-zip-perl{a} libarchive13{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcups2{a} libcurl4{a} libdbus-1-3{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu67{a} libjpeg62-turbo{a} libjsoncpp24{a} liblcms2-2{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libncurses6{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpcsclite1{a} libpipeline1{a} libpng16-16{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libvulkan1{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} ucf{a} x11-common{a}
The following packages are RECOMMENDED but will NOT be installed:
alsa-topology-conf alsa-ucm-conf curl dbus fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libxt-dev lynx mesa-vulkan-drivers psmisc publicsuffix shared-mime-info wget xdg-user-dirs
0 packages upgraded, 130 newly installed, 0 to remove and 0 not upgraded.
Need to get 281 MB of archives. After unpacking 562 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB]
Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB]
Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB]
Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB]
Get: 6 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB]
Get: 7 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB]
Get: 8 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB]
Get: 9 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get: 10 http://deb.debian.org/debian bullseye/main armhf openssl armhf 1.1.1k-1 [826 kB]
Get: 11 http://deb.debian.org/debian bullseye/main armhf ca-certificates all 20210119 [158 kB]
Get: 12 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get: 13 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get: 14 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB]
Get: 15 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB]
Get: 16 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB]
Get: 17 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB]
Get: 18 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB]
Get: 19 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB]
Get: 20 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 21 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB]
Get: 22 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB]
Get: 23 http://deb.debian.org/debian bullseye/main armhf java-common all 0.72 [14.5 kB]
Get: 24 http://deb.debian.org/debian bullseye/main armhf libavahi-common-data armhf 0.8-5 [123 kB]
Get: 25 http://deb.debian.org/debian bullseye/main armhf libavahi-common3 armhf 0.8-5 [55.1 kB]
Get: 26 http://deb.debian.org/debian bullseye/main armhf libdbus-1-3 armhf 1.12.20-2 [196 kB]
Get: 27 http://deb.debian.org/debian bullseye/main armhf libavahi-client3 armhf 0.8-5 [58.5 kB]
Get: 28 http://deb.debian.org/debian bullseye/main armhf libcups2 armhf 2.3.3op2-3+deb11u1 [317 kB]
Get: 29 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB]
Get: 30 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB]
Get: 31 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB]
Get: 32 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB]
Get: 33 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB]
Get: 34 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB]
Get: 35 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get: 36 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get: 37 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB]
Get: 38 http://deb.debian.org/debian bullseye/main armhf libnspr4 armhf 2:4.29-1 [90.7 kB]
Get: 39 http://deb.debian.org/debian bullseye/main armhf libnss3 armhf 2:3.61-1 [1114 kB]
Get: 40 http://deb.debian.org/debian bullseye/main armhf libasound2-data all 1.2.4-1.1 [38.2 kB]
Get: 41 http://deb.debian.org/debian bullseye/main armhf libasound2 armhf 1.2.4-1.1 [310 kB]
Get: 42 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB]
Get: 43 http://deb.debian.org/debian bullseye/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB]
Get: 44 http://deb.debian.org/debian bullseye/main armhf libharfbuzz0b armhf 2.7.4-1 [1427 kB]
Get: 45 http://deb.debian.org/debian bullseye/main armhf libpcsclite1 armhf 1.9.1-1 [57.2 kB]
Get: 46 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jre-headless armhf 11.0.11+9-1 [32.9 MB]
Get: 47 http://deb.debian.org/debian bullseye/main armhf default-jre-headless armhf 2:1.11-72 [10.9 kB]
Get: 48 http://deb.debian.org/debian bullseye/main armhf ca-certificates-java all 20190909 [15.7 kB]
Get: 49 http://deb.debian.org/debian bullseye/main armhf cmake-data all 3.18.4-2 [1725 kB]
Get: 50 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB]
Get: 51 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB]
Get: 52 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+b1 [304 kB]
Get: 53 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB]
Get: 54 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB]
Get: 55 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB]
Get: 56 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB]
Get: 57 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB]
Get: 58 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB]
Get: 59 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB]
Get: 60 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB]
Get: 61 http://deb.debian.org/debian bullseye/main armhf libjsoncpp24 armhf 1.9.4-4 [68.5 kB]
Get: 62 http://deb.debian.org/debian bullseye/main armhf librhash0 armhf 1.4.1-2 [144 kB]
Get: 63 http://deb.debian.org/debian bullseye/main armhf libuv1 armhf 1.40.0-2 [120 kB]
Get: 64 http://deb.debian.org/debian bullseye/main armhf cmake armhf 3.18.4-2 [3534 kB]
Get: 65 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get: 66 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB]
Get: 67 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 68 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 69 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get: 70 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 71 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 72 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB]
Get: 73 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB]
Get: 74 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB]
Get: 75 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 76 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 77 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB]
Get: 78 http://deb.debian.org/debian bullseye/main armhf libglvnd0 armhf 1.3.2-1 [51.8 kB]
Get: 79 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB]
Get: 80 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB]
Get: 81 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get: 82 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get: 83 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get: 84 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.1-1 [310 kB]
Get: 85 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.1-1 [712 kB]
Get: 86 http://deb.debian.org/debian bullseye/main armhf libdrm-common all 2.4.104-1 [14.9 kB]
Get: 87 http://deb.debian.org/debian bullseye/main armhf libdrm2 armhf 2.4.104-1 [37.7 kB]
Get: 88 http://deb.debian.org/debian bullseye/main armhf libglapi-mesa armhf 20.3.4-1 [80.2 kB]
Get: 89 http://deb.debian.org/debian bullseye/main armhf libx11-xcb1 armhf 2:1.7.1-1 [203 kB]
Get: 90 http://deb.debian.org/debian bullseye/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB]
Get: 91 http://deb.debian.org/debian bullseye/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB]
Get: 92 http://deb.debian.org/debian bullseye/main armhf libxcb-glx0 armhf 1.14-3 [116 kB]
Get: 93 http://deb.debian.org/debian bullseye/main armhf libxcb-present0 armhf 1.14-3 [101 kB]
Get: 94 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get: 95 http://deb.debian.org/debian bullseye/main armhf libxcb-sync1 armhf 1.14-3 [104 kB]
Get: 96 http://deb.debian.org/debian bullseye/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB]
Get: 97 http://deb.debian.org/debian bullseye/main armhf libxdamage1 armhf 1:1.1.5-2 [15.1 kB]
Get: 98 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get: 99 http://deb.debian.org/debian bullseye/main armhf libxfixes3 armhf 1:5.0.3-2 [20.6 kB]
Get: 100 http://deb.debian.org/debian bullseye/main armhf libxshmfence1 armhf 1.3-1 [8592 B]
Get: 101 http://deb.debian.org/debian bullseye/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB]
Get: 102 http://deb.debian.org/debian bullseye/main armhf libdrm-amdgpu1 armhf 2.4.104-1 [27.1 kB]
Get: 103 http://deb.debian.org/debian bullseye/main armhf libdrm-nouveau2 armhf 2.4.104-1 [24.6 kB]
Get: 104 http://deb.debian.org/debian bullseye/main armhf libdrm-radeon1 armhf 2.4.104-1 [27.6 kB]
Get: 105 http://deb.debian.org/debian bullseye/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB]
Get: 106 http://deb.debian.org/debian bullseye/main armhf libz3-4 armhf 4.8.10-1 [5959 kB]
Get: 107 http://deb.debian.org/debian bullseye/main armhf libllvm11 armhf 1:11.0.1-2 [15.4 MB]
Get: 108 http://deb.debian.org/debian bullseye/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB]
Get: 109 http://deb.debian.org/debian bullseye/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB]
Get: 110 http://deb.debian.org/debian bullseye/main armhf libvulkan1 armhf 1.2.162.0-1 [84.3 kB]
Get: 111 http://deb.debian.org/debian bullseye/main armhf libgl1-mesa-dri armhf 20.3.4-1 [6037 kB]
Get: 112 http://deb.debian.org/debian bullseye/main armhf libglx-mesa0 armhf 20.3.4-1 [167 kB]
Get: 113 http://deb.debian.org/debian bullseye/main armhf libglx0 armhf 1.3.2-1 [32.8 kB]
Get: 114 http://deb.debian.org/debian bullseye/main armhf libgl1 armhf 1.3.2-1 [94.3 kB]
Get: 115 http://deb.debian.org/debian bullseye/main armhf libgif7 armhf 5.1.9-2 [42.7 kB]
Get: 116 http://deb.debian.org/debian bullseye/main armhf libxi6 armhf 2:1.7.10-1 [78.5 kB]
Get: 117 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get: 118 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB]
Get: 119 http://deb.debian.org/debian bullseye/main armhf libxtst6 armhf 2:1.2.3-1 [26.3 kB]
Get: 120 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jre armhf 11.0.11+9-1 [151 kB]
Get: 121 http://deb.debian.org/debian bullseye/main armhf default-jre armhf 2:1.11-72 [1044 B]
Get: 122 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jdk-headless armhf 11.0.11+9-1 [174 MB]
Get: 123 http://deb.debian.org/debian bullseye/main armhf default-jdk-headless armhf 2:1.11-72 [1100 B]
Get: 124 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jdk armhf 11.0.11+9-1 [6937 kB]
Get: 125 http://deb.debian.org/debian bullseye/main armhf default-jdk armhf 2:1.11-72 [1056 B]
Get: 126 http://deb.debian.org/debian bullseye/main armhf libpcre16-3 armhf 2:8.39-13 [239 kB]
Get: 127 http://deb.debian.org/debian bullseye/main armhf libpcre32-3 armhf 2:8.39-13 [231 kB]
Get: 128 http://deb.debian.org/debian bullseye/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get: 129 http://deb.debian.org/debian bullseye/main armhf libpcre3-dev armhf 2:8.39-13 [587 kB]
Get: 130 http://deb.debian.org/debian bullseye/main armhf libsimde-dev all 0.7.2-4 [259 kB]
Fetched 281 MB in 22s (12.6 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
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(Reading database ... 19398 files and directories currently installed.)
Preparing to unpack .../000-bsdextrautils_2.36.1-7_armhf.deb ...
Unpacking bsdextrautils (2.36.1-7) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../002-groff-base_1.22.4-6_armhf.deb ...
Unpacking groff-base (1.22.4-6) ...
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Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../005-libncurses6_6.2+20201114-2_armhf.deb ...
Unpacking libncurses6:armhf (6.2+20201114-2) ...
Selecting previously unselected package libprocps8:armhf.
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Unpacking libprocps8:armhf (2:3.3.17-5) ...
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Unpacking procps (2:3.3.17-5) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../008-sensible-utils_0.0.14_all.deb ...
Unpacking sensible-utils (0.0.14) ...
Selecting previously unselected package openssl.
Preparing to unpack .../009-openssl_1.1.1k-1_armhf.deb ...
Unpacking openssl (1.1.1k-1) ...
Selecting previously unselected package ca-certificates.
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Unpacking ca-certificates (20210119) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../011-libmagic-mgc_1%3a5.39-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../012-libmagic1_1%3a5.39-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../013-file_1%3a5.39-3_armhf.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
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Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package ucf.
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Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../016-libsigsegv2_2.13-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../017-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
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Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
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Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
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Unpacking automake (1:1.16.3-2) ...
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Unpacking autopoint (0.21-4) ...
Selecting previously unselected package java-common.
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Unpacking java-common (0.72) ...
Selecting previously unselected package libavahi-common-data:armhf.
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Unpacking libavahi-common-data:armhf (0.8-5) ...
Selecting previously unselected package libavahi-common3:armhf.
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Unpacking libavahi-common3:armhf (0.8-5) ...
Selecting previously unselected package libdbus-1-3:armhf.
Preparing to unpack .../025-libdbus-1-3_1.12.20-2_armhf.deb ...
Unpacking libdbus-1-3:armhf (1.12.20-2) ...
Selecting previously unselected package libavahi-client3:armhf.
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Unpacking libavahi-client3:armhf (0.8-5) ...
Selecting previously unselected package libcups2:armhf.
Preparing to unpack .../027-libcups2_2.3.3op2-3+deb11u1_armhf.deb ...
Unpacking libcups2:armhf (2.3.3op2-3+deb11u1) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../028-liblcms2-2_2.12~rc1-2_armhf.deb ...
Unpacking liblcms2-2:armhf (2.12~rc1-2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../029-libjpeg62-turbo_1%3a2.0.6-4_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.0.6-4) ...
Selecting previously unselected package libexpat1:armhf.
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Unpacking libexpat1:armhf (2.2.10-2) ...
Selecting previously unselected package libbrotli1:armhf.
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Unpacking libbrotli1:armhf (1.0.9-2+b2) ...
Selecting previously unselected package libpng16-16:armhf.
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Unpacking libpng16-16:armhf (1.6.37-3) ...
Selecting previously unselected package libfreetype6:armhf.
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Unpacking libfreetype6:armhf (2.10.4+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-core.
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Unpacking fonts-dejavu-core (2.37-2) ...
Selecting previously unselected package fontconfig-config.
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Unpacking fontconfig-config (2.13.1-4.2) ...
Selecting previously unselected package libfontconfig1:armhf.
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Unpacking libfontconfig1:armhf (2.13.1-4.2) ...
Selecting previously unselected package libnspr4:armhf.
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Unpacking libnspr4:armhf (2:4.29-1) ...
Selecting previously unselected package libnss3:armhf.
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Unpacking libnss3:armhf (2:3.61-1) ...
Selecting previously unselected package libasound2-data.
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Unpacking libasound2-data (1.2.4-1.1) ...
Selecting previously unselected package libasound2:armhf.
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Unpacking libasound2:armhf (1.2.4-1.1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../041-libglib2.0-0_2.66.8-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.66.8-1) ...
Selecting previously unselected package libgraphite2-3:armhf.
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Unpacking libgraphite2-3:armhf (1.3.14-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
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Unpacking libharfbuzz0b:armhf (2.7.4-1) ...
Selecting previously unselected package libpcsclite1:armhf.
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Unpacking libpcsclite1:armhf (1.9.1-1) ...
Selecting previously unselected package openjdk-11-jre-headless:armhf.
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Unpacking openjdk-11-jre-headless:armhf (11.0.11+9-1) ...
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Unpacking default-jre-headless (2:1.11-72) ...
Selecting previously unselected package ca-certificates-java.
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Unpacking ca-certificates-java (20190909) ...
Selecting previously unselected package cmake-data.
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Unpacking cmake-data (3.18.4-2) ...
Selecting previously unselected package libicu67:armhf.
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Unpacking libicu67:armhf (67.1-7) ...
Selecting previously unselected package libxml2:armhf.
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Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ...
Selecting previously unselected package libarchive13:armhf.
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Unpacking libarchive13:armhf (3.4.3-2+b1) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
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Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ...
Selecting previously unselected package libsasl2-2:armhf.
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Selecting previously unselected package libldap-2.4-2:armhf.
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Unpacking libldap-2.4-2:armhf (2.4.57+dfsg-3) ...
Selecting previously unselected package libnghttp2-14:armhf.
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Unpacking libnghttp2-14:armhf (1.43.0-1) ...
Selecting previously unselected package libpsl5:armhf.
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Unpacking libpsl5:armhf (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:armhf.
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Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
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Unpacking libssh2-1:armhf (1.9.0-2) ...
Selecting previously unselected package libcurl4:armhf.
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Unpacking libcurl4:armhf (7.74.0-1.3+b1) ...
Selecting previously unselected package libjsoncpp24:armhf.
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Unpacking libjsoncpp24:armhf (1.9.4-4) ...
Selecting previously unselected package librhash0:armhf.
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Unpacking librhash0:armhf (1.4.1-2) ...
Selecting previously unselected package libuv1:armhf.
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Unpacking libuv1:armhf (1.40.0-2) ...
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Unpacking cmake (3.18.4-2) ...
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Unpacking libdebhelper-perl (13.3.4) ...
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Unpacking libtool (2.4.6-15) ...
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Unpacking dh-autoreconf (20) ...
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Unpacking libarchive-zip-perl (1.68-1) ...
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Unpacking libsub-override-perl (0.09-2) ...
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Unpacking dh-strip-nondeterminism (1.12.0-1) ...
Selecting previously unselected package libelf1:armhf.
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Unpacking libelf1:armhf (0.183-1) ...
Selecting previously unselected package dwz.
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Unpacking dwz (0.13+20210201-1) ...
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Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
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Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.21+nmu1) ...
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Unpacking debhelper (13.3.4) ...
Selecting previously unselected package libglvnd0:armhf.
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Unpacking libglvnd0:armhf (1.3.2-1) ...
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Unpacking libmd0:armhf (1.0.3-3) ...
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Unpacking libbsd0:armhf (0.11.3-1) ...
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Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
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Unpacking libxcb1:armhf (1.14-3) ...
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Unpacking libx11-data (2:1.7.1-1) ...
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Setting up libpcrecpp0v5:armhf (2:8.39-13) ...
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Setting up libgraphite2-3:armhf (1.3.14-1) ...
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Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.36.1-7) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libpcre16-3:armhf (2:8.39-13) ...
Setting up java-common (0.72) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.8-1) ...
No schema files found: doing nothing.
Setting up libglvnd0:armhf (1.3.2-1) ...
Setting up libdebhelper-perl (13.3.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up x11-common (1:7.7+22) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libsensors-config (1:3.6.0-7) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ...
Setting up libasound2-data (1.2.4-1.1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libz3-4:armhf (4.8.10-1) ...
Setting up libuv1:armhf (1.40.0-2) ...
Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ...
Setting up libx11-data (2:1.7.1-1) ...
Setting up libnspr4:armhf (2:4.29-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libavahi-common-data:armhf (0.8-5) ...
Setting up libncurses6:armhf (6.2+20201114-2) ...
Setting up libdbus-1-3:armhf (1.12.20-2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libpcre32-3:armhf (2:8.39-13) ...
Setting up autopoint (0.21-4) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up libpcsclite1:armhf (1.9.1-1) ...
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Setting up libglapi-mesa:armhf (20.3.4-1) ...
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Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
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Setting up libtool (2.4.6-15) ...
Setting up libarchive13:armhf (3.4.3-2+b1) ...
Setting up libpcre3-dev:armhf (2:8.39-13) ...
Setting up libxcb-glx0:armhf (1.14-3) ...
Setting up libedit2:armhf (3.1-20191231-2+b1) ...
Setting up libavahi-common3:armhf (0.8-5) ...
Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3) ...
Setting up m4 (1.4.18-5) ...
Setting up libnss3:armhf (2:3.61-1) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxcb-present0:armhf (1.14-3) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libllvm11:armhf (1:11.0.1-2) ...
Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
Setting up libxcb-sync1:armhf (1.14-3) ...
Setting up ucf (3.0043) ...
Setting up autoconf (2.69-14) ...
Setting up libxcb-dri2-0:armhf (1.14-3) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up libdrm2:armhf (2.4.104-1) ...
Setting up dwz (0.13+20210201-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up procps (2:3.3.17-5) ...
Setting up libcurl4:armhf (7.74.0-1.3+b1) ...
Setting up libx11-6:armhf (2:1.7.1-1) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libavahi-client3:armhf (0.8-5) ...
Setting up libdrm-amdgpu1:armhf (2.4.104-1) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libxcb-dri3-0:armhf (1.14-3) ...
Setting up libx11-xcb1:armhf (2:1.7.1-1) ...
Setting up libdrm-nouveau2:armhf (2.4.104-1) ...
Setting up libxdamage1:armhf (1:1.1.5-2) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libdrm-radeon1:armhf (2.4.104-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libgl1-mesa-dri:armhf (20.3.4-1) ...
Setting up libxext6:armhf (2:1.3.3-1.1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up dh-autoreconf (20) ...
Setting up libxfixes3:armhf (1:5.0.3-2) ...
Setting up libcups2:armhf (2.3.3op2-3+deb11u1) ...
Setting up cmake (3.18.4-2) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libglx-mesa0:armhf (20.3.4-1) ...
Setting up libxi6:armhf (2:1.7.10-1) ...
Setting up libglx0:armhf (1.3.2-1) ...
Setting up libxtst6:armhf (2:1.2.3-1) ...
Setting up debhelper (13.3.4) ...
Setting up libgl1:armhf (1.3.2-1) ...
Setting up default-jre-headless (2:1.11-72) ...
Setting up openjdk-11-jre-headless:armhf (11.0.11+9-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up openjdk-11-jre:armhf (11.0.11+9-1) ...
Setting up openjdk-11-jdk-headless:armhf (11.0.11+9-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre (2:1.11-72) ...
Setting up default-jdk-headless (2:1.11-72) ...
Setting up openjdk-11-jdk:armhf (11.0.11+9-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up ca-certificates-java (20190909) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:GTS_Root_R4.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:GTS_Root_R3.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:SecureTrust_CA.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:EC-ACC.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:Izenpe.com.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:Certigna.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:GTS_Root_R2.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
done.
Setting up default-jdk (2:1.11-72) ...
Processing triggers for libc-bin (2.31-12) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plast_2.3.2+dfsg-7_source.changes
dpkg-buildpackage: info: source package plast
dpkg-buildpackage: info: source version 2.3.2+dfsg-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=cmake
dh_auto_clean -O--buildsystem=cmake
dh_autoreconf_clean -O--buildsystem=cmake
dh_clean -O--buildsystem=cmake
debian/rules binary
dh binary --buildsystem=cmake
dh_update_autotools_config -O--buildsystem=cmake
dh_autoreconf -O--buildsystem=cmake
debian/rules override_dh_auto_configure-arch
make[1]: Entering directory '/build/plast-2.3.2+dfsg'
dh_auto_configure
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 10.2.1
-- The CXX compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/build/plast-2.3.2+dfsg'
debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/build/plast-2.3.2+dfsg'
dh_auto_build
cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/depend
make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend
make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
cd /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/DependInfo.cmake --color=
make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
cd /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/DependInfo.cmake --color=
Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/DependInfo.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/depend.internal".
Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/depend.internal".
Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/DependInfo.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/depend.internal".
Dependee "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/depend.internal".
Scanning dependencies of target PlastLibrary
make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build
Scanning dependencies of target plast
make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build
make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o
[ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o
[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp
[ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp
[ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp
[ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp
[ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp
[ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp
[ 3%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoConfig.cpp
[ 3%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp
[ 3%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp:23:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> >}; _Tp = std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> >; _Alloc = std::allocator<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> > >]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> > >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> > > algo::core::impl::DefaultEnvironment::buildUri(database::IDatabaseQuickReader*, database::IDatabaseQuickReader*)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> >*, std::vector<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 3%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp
[ 3%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o
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[ 5%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoConfig.cpp
[ 5%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/common/AbstractHitIterator.cpp
[ 5%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/common/AbstractPipeHitIterator.cpp
[ 6%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o
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[ 6%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/gap/FullGapHitIterator.cpp
[ 6%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp
[ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIterator.cpp
[ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp
[ 7%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp
[ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp:23:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> >}; _Tp = std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> >; _Alloc = std::allocator<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> > >]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> > >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> > > algo::core::impl::DefaultEnvironment::buildUri(database::IDatabaseQuickReader*, database::IDatabaseQuickReader*)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> >*, std::vector<std::pair<misc::Range<long long unsigned int>, misc::Range<long long unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/ScoreMatrix.cpp
[ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp
[ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/common/AbstractHitIterator.cpp
[ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/common/AbstractPipeHitIterator.cpp
[ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/hsp/HspExtensionCmd.cpp
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[ 10%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o
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[ 11%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o
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[ 13%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o
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[ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o
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[ 13%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o
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[ 14%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp
[ 14%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o
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[ 14%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o
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[ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o
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[ 15%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp
[ 16%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp
[ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp
[ 16%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp
[ 16%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp
[ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp
[ 17%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp
[ 17%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp
[ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp
[ 19%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/algo/stats/impl/Statistics.hpp:30,
from /build/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp:23:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const statistics::IQueryInformation::SequenceInfo&}; _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator<statistics::IQueryInformation::SequenceInfo>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<statistics::IQueryInformation::SequenceInfo>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/algo/stats/impl/Statistics.hpp:30,
from /build/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp:23:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void statistics::impl::QueryInformation::build()':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<statistics::IQueryInformation::SequenceInfo*, std::vector<statistics::IQueryInformation::SequenceInfo> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 19%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp
[ 19%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp
[ 19%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp
[ 20%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp
[ 20%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/algo/stats/impl/Statistics.hpp:30,
from /build/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp:23:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const statistics::IQueryInformation::SequenceInfo&}; _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator<statistics::IQueryInformation::SequenceInfo>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<statistics::IQueryInformation::SequenceInfo>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/algo/stats/impl/Statistics.hpp:30,
from /build/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp:23:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void statistics::impl::QueryInformation::build()':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<statistics::IQueryInformation::SequenceInfo*, std::vector<statistics::IQueryInformation::SequenceInfo> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp
[ 21%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp
[ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp
[ 22%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/HspContainer.cpp
[ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp
[ 22%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/ReaderAlignmentContainer.cpp
[ 22%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/UngapAlignmentContainer.cpp
[ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp
[ 24%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp
[ 24%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterFactory.cpp
[ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp
[ 24%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterOperator.cpp
[ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp
[ 25%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterXML.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/core/api/Alignment.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/api/IAlignmentFilter.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp:28,
from /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/core/api/Alignment.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/api/IAlignmentFilter.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp:28,
from /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:17:
/usr/include/c++/10/bits/stl_vector.h: In constructor 'alignment::filter::impl::AlignmentFilterUnaryOperator<T>::AlignmentFilterUnaryOperator(const std::vector<std::__cxx11::basic_string<char> >&) [with T = double]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/HspContainer.cpp
[ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/ReaderAlignmentContainer.cpp
[ 26%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp
[ 27%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentOverlapCmd.cpp
[ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/UngapAlignmentContainer.cpp
[ 27%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitter.cpp
[ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp
[ 28%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitterBanded.cpp
[ 29%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlign.cpp
[ 29%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp
[ 29%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareContainerVisitor.cpp
[ 30%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareResultVisitor.cpp
[ 30%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/FilterContainerVisitor.cpp
[ 30%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/core/api/Alignment.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/api/IAlignmentFilter.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp:28,
from /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ModelBuilderVisitor.cpp
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/core/api/Alignment.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/api/IAlignmentFilter.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp:28,
from /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:17:
/usr/include/c++/10/bits/stl_vector.h: In constructor 'alignment::filter::impl::AlignmentFilterUnaryOperator<T>::AlignmentFilterUnaryOperator(const std::vector<std::__cxx11::basic_string<char> >&) [with T = double]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 31%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp
[ 31%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/QueryReorderVisitor.cpp
[ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterFactory.cpp
[ 32%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ReverseStrandVisitor.cpp
[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterOperator.cpp
[ 32%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp
[ 33%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/SortContainerVisitor.cpp
[ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterXML.cpp
[ 34%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp
[ 34%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp
[ 35%] Building CXX object CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp
[ 35%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp
[ 35%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp
[ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp
[ 36%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp
[ 36%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentOverlapCmd.cpp
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:17:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 37%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp
[ 38%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp
[ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitter.cpp
[ 38%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp
[ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitterBanded.cpp
[ 38%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp
[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlign.cpp
[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31,
from /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In constructor 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list<database::ISequenceDatabase*>)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31,
from /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 40%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp
[ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareContainerVisitor.cpp
[ 40%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp
[ 41%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)':
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
200 | fread (&magic, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
211 | fread (&len, sizeof(size_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
215 | fread (buffer, sizeof(char), len, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
231 | fread (&_totalSize, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
234 | fread (&_dataSize, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
247 | fread (&nbOffsets, sizeof(size_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
253 | fread (&offset, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)':
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:17:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void database::impl::FastaDatabaseQuickReader::read(u_int64_t)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp
[ 41%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp
[ 42%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp
[ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareResultVisitor.cpp
[ 43%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp
[ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o
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[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:17:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o
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[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp
[ 53%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp
[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp
/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()':
/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
119 | system (tmp);
| ~~~~~~~^~~~~
[ 53%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp
[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp
[ 53%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp
[ 54%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31,
from /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In constructor 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list<database::ISequenceDatabase*>)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31,
from /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp
[ 55%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp
[ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp
[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)':
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
200 | fread (&magic, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
211 | fread (&len, sizeof(size_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
215 | fread (buffer, sizeof(char), len, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
231 | fread (&_totalSize, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
234 | fread (&_dataSize, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
247 | fread (&nbOffsets, sizeof(size_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
253 | fread (&offset, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)':
/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30,
from /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:17:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void database::impl::FastaDatabaseQuickReader::read(u_int64_t)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 56%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp
[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp
[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp
[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp
[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/index/impl/AbstractDatabaseIndex.hpp:28,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/index/impl/DatabaseIndex.hpp:28,
from /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'virtual seed::ISeedIterator* indexation::impl::DatabaseIndexCodonStopOptim::createSeedsIterator(const database::IWord&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp
[ 58%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp
[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp
[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp
[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp
[ 59%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp
[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp
[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp
[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp
[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp
[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp
[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp
[ 62%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp
/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()':
/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
119 | system (tmp);
| ~~~~~~~^~~~~
[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp
[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp
[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp
[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp
[ 64%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o
/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c
/build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static
1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask);
| ^~~~~~~~~~~~~~
[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp
[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp
[ 65%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp
[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/index/impl/AbstractDatabaseIndex.hpp:28,
from /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/index/impl/DatabaseIndex.hpp:28,
from /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp:17:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'virtual seed::ISeedIterator* indexation::impl::DatabaseIndexCodonStopOptim::createSeedsIterator(const database::IWord&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp
[ 66%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o
/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c
/build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static
1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask);
| ^~~~~~~~~~~~~~
[ 66%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp
[ 67%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp
[ 67%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp
[ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp
[ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp
[ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp
[ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp
[ 69%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp
[ 69%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp
[ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp
/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)':
/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type]
316 | }
| ^
[ 69%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp
[ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp
[ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp
/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)':
/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
[ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp
[ 71%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp
[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp
[ 72%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp
[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp
[ 72%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp
/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)':
/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
[ 73%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp
[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp
/build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()':
/build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n",
| ~~^
| |
| long int
| %d
163 | i,
| ~
| |
| size_t {aka unsigned int}
/build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)':
/build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n",
| ~~^
| |
| long int
| %d
257 | _currentAlgo,
| ~~~~~~~~~~~~
| |
| size_t {aka unsigned int}
[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp
[ 74%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp
[ 75%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9:
/usr/include/c++/10/bits/stl_vector.h: In constructor 'misc::impl::ObsfucatedString::ObsfucatedString(misc::impl::ObsfucatedString::LONG, ...)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In static member function 'static std::string misc::impl::ObsfucatedString::obsfucate(const string&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 75%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp
[ 75%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o
/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp
[ 76%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o
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/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()':
/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
42 | system (ss.str().c_str());
| ~~~~~~~^~~~~~~~~~~~~~~~~~
/build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()':
/build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
46 | fgets (buffer, sizeof(buffer), file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)':
/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type]
316 | }
| ^
[ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp
/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()':
/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
243 | printf ("[%ld/%ld] ", i, _span);
| ~~^ ~
| | |
| long int size_t {aka unsigned int}
| %d
/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
243 | printf ("[%ld/%ld] ", i, _span);
| ~~^ ~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] );
| ~~^ ~
| | |
| long int size_t {aka unsigned int}
| %d
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/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)':
/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
/build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
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/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)':
/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n",
| ~~^
| |
| long int
| %d
......
126 | os::impl::DefaultFactory::thread().getNbCores()
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| size_t {aka unsigned int}
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make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
[ 88%] Built target plast
[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp
[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp
/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)':
/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s);
| ~~~~^ ~
| | |
| long int size_t {aka unsigned int}
| %02d
[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp
/build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()':
/build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n",
| ~~^
| |
| long int
| %d
163 | i,
| ~
| |
| size_t {aka unsigned int}
/build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)':
/build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n",
| ~~^
| |
| long int
| %d
257 | _currentAlgo,
| ~~~~~~~~~~~~
| |
| size_t {aka unsigned int}
[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp
In file included from /usr/include/c++/10/vector:72,
from /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9:
/usr/include/c++/10/bits/stl_vector.h: In constructor 'misc::impl::ObsfucatedString::ObsfucatedString(misc::impl::ObsfucatedString::LONG, ...)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In static member function 'static std::string misc::impl::ObsfucatedString::obsfucate(const string&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp
[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp
[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp
/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()':
/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
42 | system (ss.str().c_str());
| ~~~~~~~^~~~~~~~~~~~~~~~~~
[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp
[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp
/build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()':
/build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
46 | fgets (buffer, sizeof(buffer), file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp
[ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp
[ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp
[ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp
[ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp
[ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp
[ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp
[ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp
[ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp
[ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp
[ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp
[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o
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[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp
[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp
[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp
[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp
[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp
[ 98%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp
[ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o
/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c
[ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o
/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c
/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()':
/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
243 | printf ("[%ld/%ld] ", i, _span);
| ~~^ ~
| | |
| long int size_t {aka unsigned int}
| %d
/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
243 | printf ("[%ld/%ld] ", i, _span);
| ~~^ ~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] );
| ~~^ ~
| | |
| long int size_t {aka unsigned int}
| %d
[ 99%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o
/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c
[ 99%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o
/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp
/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)':
/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n",
| ~~^
| |
| long int
| %d
......
126 | os::impl::DefaultFactory::thread().getNbCores()
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| size_t {aka unsigned int}
[100%] Linking CXX shared library lib/None/libPlastLibrary.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/PlastLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libPlastLibrary.so -o lib/None/libPlastLibrary.so CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o 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CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o
make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target PlastLibrary
make[3]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[2]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
make[1]: Leaving directory '/build/plast-2.3.2+dfsg'
debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/build/plast-2.3.2+dfsg'
scripts/test-plast.sh
Start PLAST...
obj-arm-linux-gnueabihf/bin/None/plast -p plastp -i /build/plast-2.3.2+dfsg/db/query.fa -d /build/plast-2.3.2+dfsg/db/tursiops.fa -o obj-arm-linux-gnueabihf/bin/None/out.txt
*** SUCCESS: result file is: obj-arm-linux-gnueabihf/bin/None/out.txt
make[1]: Leaving directory '/build/plast-2.3.2+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=cmake
dh_prep -O--buildsystem=cmake
dh_installdirs -O--buildsystem=cmake
debian/rules override_dh_auto_install-indep
make[1]: Entering directory '/build/plast-2.3.2+dfsg'
echo "I: Nothing to do for arch:indep binary"
I: Nothing to do for arch:indep binary
make[1]: Leaving directory '/build/plast-2.3.2+dfsg'
dh_auto_install -O--buildsystem=cmake -Nplast-example
cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/tools
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeed.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedModel.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/Option.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/OptionsParser.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStrings.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/RangeTree.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/obsfucation.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/types.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/CompleteSubjectDatabaseStats.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/version.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/Vector.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h
-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h
make[1]: Leaving directory '/build/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install-arch
make[1]: Entering directory '/build/plast-2.3.2+dfsg'
dh_install -a
# install binary
cp -a obj-arm-linux-gnueabihf/bin/*/plast debian/plast/usr/lib/plast/bin/
# no need for the includes
rm -rf debian/*/usr/include
make[1]: Leaving directory '/build/plast-2.3.2+dfsg'
dh_install -O--buildsystem=cmake -Nplast
dh_installdocs -O--buildsystem=cmake
dh_installchangelogs -O--buildsystem=cmake
dh_installman -O--buildsystem=cmake
dh_installsystemduser -O--buildsystem=cmake
dh_perl -O--buildsystem=cmake
dh_link -O--buildsystem=cmake
dh_strip_nondeterminism -O--buildsystem=cmake
dh_compress -O--buildsystem=cmake
dh_fixperms -O--buildsystem=cmake
dh_missing -O--buildsystem=cmake
dh_dwz -a -O--buildsystem=cmake
dh_strip -a -O--buildsystem=cmake
dh_makeshlibs -a -O--buildsystem=cmake
dh_shlibdeps -a -O--buildsystem=cmake
dpkg-shlibdeps: warning: debian/plast/usr/lib/plast/bin/plast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -O--buildsystem=cmake
debian/rules override_dh_gencontrol-arch
make[1]: Entering directory '/build/plast-2.3.2+dfsg'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), "
dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined
make[1]: Leaving directory '/build/plast-2.3.2+dfsg'
dh_gencontrol -O--buildsystem=cmake -Nplast
dh_md5sums -O--buildsystem=cmake
dh_builddeb -O--buildsystem=cmake
dpkg-deb: building package 'plast' in '../plast_2.3.2+dfsg-7_armhf.deb'.
dpkg-deb: building package 'plast-dbgsym' in '../plast-dbgsym_2.3.2+dfsg-7_armhf.deb'.
dpkg-deb: building package 'plast-example' in '../plast-example_2.3.2+dfsg-7_all.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../plast_2.3.2+dfsg-7_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/31186 and its subdirectories
I: Current time: Tue Jul 20 21:19:02 -12 2021
I: pbuilder-time-stamp: 1626859142