I: pbuilder: network access will be disabled during build
I: Current time: Wed Jul 21 23:34:24 +14 2021
I: pbuilder-time-stamp: 1626860064
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [roary_3.13.0+dfsg-1.dsc]
I: copying [./roary_3.13.0+dfsg.orig.tar.xz]
I: copying [./roary_3.13.0+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.VO5vtLlW/trustedkeys.kbx': General error
gpgv: Signature made Sat Nov  9 03:51:49 2019 +14
gpgv:                using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./roary_3.13.0+dfsg-1.dsc
dpkg-source: info: extracting roary in roary-3.13.0+dfsg
dpkg-source: info: unpacking roary_3.13.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking roary_3.13.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rename_R_script.patch
dpkg-source: info: applying use-dz-starter.patch
dpkg-source: info: applying use-debian-perl-path.patch
dpkg-source: info: applying new-bioperl-require.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/27233/tmp/hooks/D01_modify_environment starting
debug: Running on virt64b.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/27233/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/27233/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
  BASH_VERSION='5.1.4(1)-release'
  BUILDDIR=/build
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=armhf
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4'
  DIRSTACK=()
  DISTRIBUTION=
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=arm
  HOST_ARCH=armhf
  IFS=' 	
  '
  INVOCATION_ID=fff40c96f02f4ab0bf05b8ec23a7eead
  LANG=C
  LANGUAGE=it_CH:it
  LC_ALL=C
  MACHTYPE=arm-unknown-linux-gnueabihf
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnueabihf
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=27233
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CVQbmZ5m3Y/pbuilderrc_J28q --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CVQbmZ5m3Y/b2 --logfile b2/build.log --extrapackages usrmerge roary_3.13.0+dfsg-1.dsc'
  SUDO_GID=113
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://10.0.0.15:8000/
I: uname -a
  Linux i-capture-the-hostname 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux
I: ls -l /bin
  total 3580
  -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash
  -rwxr-xr-x 3 root root  26052 Jul 21  2020 bunzip2
  -rwxr-xr-x 3 root root  26052 Jul 21  2020 bzcat
  lrwxrwxrwx 1 root root      6 Jul 21  2020 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root   2225 Jul 21  2020 bzdiff
  lrwxrwxrwx 1 root root      6 Jul 21  2020 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root   4877 Sep  5  2019 bzexe
  lrwxrwxrwx 1 root root      6 Jul 21  2020 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root   3775 Jul 21  2020 bzgrep
  -rwxr-xr-x 3 root root  26052 Jul 21  2020 bzip2
  -rwxr-xr-x 1 root root   9636 Jul 21  2020 bzip2recover
  lrwxrwxrwx 1 root root      6 Jul 21  2020 bzless -> bzmore
  -rwxr-xr-x 1 root root   1297 Jul 21  2020 bzmore
  -rwxr-xr-x 1 root root  26668 Sep 23  2020 cat
  -rwxr-xr-x 1 root root  43104 Sep 23  2020 chgrp
  -rwxr-xr-x 1 root root  38984 Sep 23  2020 chmod
  -rwxr-xr-x 1 root root  43112 Sep 23  2020 chown
  -rwxr-xr-x 1 root root  92616 Sep 23  2020 cp
  -rwxr-xr-x 1 root root  75524 Dec 11  2020 dash
  -rwxr-xr-x 1 root root  75880 Sep 23  2020 date
  -rwxr-xr-x 1 root root  55436 Sep 23  2020 dd
  -rwxr-xr-x 1 root root  59912 Sep 23  2020 df
  -rwxr-xr-x 1 root root  96764 Sep 23  2020 dir
  -rwxr-xr-x 1 root root  55012 Feb  8 04:38 dmesg
  lrwxrwxrwx 1 root root      8 Nov  8  2019 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root      8 Nov  8  2019 domainname -> hostname
  -rwxr-xr-x 1 root root  22508 Sep 23  2020 echo
  -rwxr-xr-x 1 root root     28 Nov 10  2020 egrep
  -rwxr-xr-x 1 root root  22496 Sep 23  2020 false
  -rwxr-xr-x 1 root root     28 Nov 10  2020 fgrep
  -rwxr-xr-x 1 root root  47492 Feb  8 04:38 findmnt
  -rwsr-xr-x 1 root root  26076 Feb 27 06:12 fusermount
  -rwxr-xr-x 1 root root 124508 Nov 10  2020 grep
  -rwxr-xr-x 2 root root   2346 Mar  3 13:30 gunzip
  -rwxr-xr-x 1 root root   6376 Mar  3 13:30 gzexe
  -rwxr-xr-x 1 root root  64212 Mar  3 13:30 gzip
  -rwxr-xr-x 1 root root  13784 Nov  8  2019 hostname
  -rwxr-xr-x 1 root root  43180 Sep 23  2020 ln
  -rwxr-xr-x 1 root root  35068 Feb  8  2020 login
  -rwxr-xr-x 1 root root  96764 Sep 23  2020 ls
  -rwxr-xr-x 1 root root  99940 Feb  8 04:38 lsblk
  -rwxr-xr-x 1 root root  51408 Sep 23  2020 mkdir
  -rwxr-xr-x 1 root root  43184 Sep 23  2020 mknod
  -rwxr-xr-x 1 root root  30780 Sep 23  2020 mktemp
  -rwxr-xr-x 1 root root  34408 Feb  8 04:38 more
  -rwsr-xr-x 1 root root  34400 Feb  8 04:38 mount
  -rwxr-xr-x 1 root root   9824 Feb  8 04:38 mountpoint
  -rwxr-xr-x 1 root root  88524 Sep 23  2020 mv
  lrwxrwxrwx 1 root root      8 Nov  8  2019 nisdomainname -> hostname
  lrwxrwxrwx 1 root root     14 Apr 19 05:38 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root  26652 Sep 23  2020 pwd
  lrwxrwxrwx 1 root root      4 Jun 22 16:26 rbash -> bash
  -rwxr-xr-x 1 root root  30740 Sep 23  2020 readlink
  -rwxr-xr-x 1 root root  43104 Sep 23  2020 rm
  -rwxr-xr-x 1 root root  30732 Sep 23  2020 rmdir
  -rwxr-xr-x 1 root root  14144 Sep 28  2020 run-parts
  -rwxr-xr-x 1 root root  76012 Dec 23  2018 sed
  lrwxrwxrwx 1 root root      4 Jul 21 23:34 sh -> bash
  lrwxrwxrwx 1 root root      4 Jul 21 23:25 sh.distrib -> dash
  -rwxr-xr-x 1 root root  22532 Sep 23  2020 sleep
  -rwxr-xr-x 1 root root  55360 Sep 23  2020 stty
  -rwsr-xr-x 1 root root  46704 Feb  8 04:38 su
  -rwxr-xr-x 1 root root  22532 Sep 23  2020 sync
  -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar
  -rwxr-xr-x 1 root root   9808 Sep 28  2020 tempfile
  -rwxr-xr-x 1 root root  67696 Sep 23  2020 touch
  -rwxr-xr-x 1 root root  22496 Sep 23  2020 true
  -rwxr-xr-x 1 root root   9636 Feb 27 06:12 ulockmgr_server
  -rwsr-xr-x 1 root root  22108 Feb  8 04:38 umount
  -rwxr-xr-x 1 root root  22520 Sep 23  2020 uname
  -rwxr-xr-x 2 root root   2346 Mar  3 13:30 uncompress
  -rwxr-xr-x 1 root root  96764 Sep 23  2020 vdir
  -rwxr-xr-x 1 root root  38512 Feb  8 04:38 wdctl
  lrwxrwxrwx 1 root root      8 Nov  8  2019 ypdomainname -> hostname
  -rwxr-xr-x 1 root root   1984 Mar  3 13:30 zcat
  -rwxr-xr-x 1 root root   1678 Mar  3 13:30 zcmp
  -rwxr-xr-x 1 root root   5880 Mar  3 13:30 zdiff
  -rwxr-xr-x 1 root root     29 Mar  3 13:30 zegrep
  -rwxr-xr-x 1 root root     29 Mar  3 13:30 zfgrep
  -rwxr-xr-x 1 root root   2081 Mar  3 13:30 zforce
  -rwxr-xr-x 1 root root   7585 Mar  3 13:30 zgrep
  -rwxr-xr-x 1 root root   2206 Mar  3 13:30 zless
  -rwxr-xr-x 1 root root   1842 Mar  3 13:30 zmore
  -rwxr-xr-x 1 root root   4553 Mar  3 13:30 znew
I: user script /srv/workspace/pbuilder/27233/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 12~), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19398 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on dh-dist-zilla; however:
  Package dh-dist-zilla is not installed.
 pbuilder-satisfydepends-dummy depends on libdist-zilla-plugin-podweaver-perl; however:
  Package libdist-zilla-plugin-podweaver-perl is not installed.
 pbuilder-satisfydepends-dummy depends on bioperl (>= 1.7.4); however:
  Package bioperl is not installed.
 pbuilder-satisfydepends-dummy depends on libarray-utils-perl; however:
  Package libarray-utils-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libenv-path-perl; however:
  Package libenv-path-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libexception-class-perl; however:
  Package libexception-class-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libfile-find-rule-perl; however:
  Package libfile-find-rule-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libfile-grep-perl; however:
  Package libfile-grep-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libfile-slurper-perl; however:
  Package libfile-slurper-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libfile-which-perl; however:
  Package libfile-which-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libfindbin-libs-perl; however:
  Package libfindbin-libs-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libgraph-perl; however:
  Package libgraph-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libgraph-readwrite-perl; however:
  Package libgraph-readwrite-perl is not installed.
 pbuilder-satisfydepends-dummy depends on liblog-log4perl-perl; however:
  Package liblog-log4perl-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libmoose-perl; however:
  Package libmoose-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libperlio-utf8-strict-perl; however:
  Package libperlio-utf8-strict-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
  Package libtest-most-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libtest-file-perl; however:
  Package libtest-file-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libtest-files-perl; however:
  Package libtest-files-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libtest-output-perl; however:
  Package libtest-output-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libtext-csv-perl; however:
  Package libtext-csv-perl is not installed.
 pbuilder-satisfydepends-dummy depends on bedtools; however:
  Package bedtools is not installed.
 pbuilder-satisfydepends-dummy depends on cd-hit; however:
  Package cd-hit is not installed.
 pbuilder-satisfydepends-dummy depends on ncbi-blast+; however:
  Package ncbi-blast+ is not installed.
 pbuilder-satisfydepends-dummy depends on mcl; however:
  Package mcl is not installed.
 pbuilder-satisfydepends-dummy depends on parallel; however:
  Package parallel is not installed.
 pbuilder-satisfydepends-dummy depends on prank; however:
  Package prank is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-core; however:
  Package r-base-core is not installed.
 pbuilder-satisfydepends-dummy depends on mafft; however:
  Package mafft is not installed.
 pbuilder-satisfydepends-dummy depends on fasttree; however:
  Package fasttree is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bioperl{a} bsdextrautils{a} ca-certificates{a} cd-hit{a} debhelper{a} dh-autoreconf{a} dh-dist-zilla{a} dh-strip-nondeterminism{a} dwz{a} fasttree{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-c3-perl{a} libalgorithm-diff-perl{a} libaliased-perl{a} libapp-cmd-perl{a} libarchive-zip-perl{a} libarray-utils-perl{a} libautobox-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcapture-tiny-perl{a} libcarp-clan-perl{a} libclass-c3-perl{a} libclass-data-inheritable-perl{a} libclass-inspector-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclass-method-modifiers-perl{a} libclass-singleton-perl{a} libclone-perl{a} libconfig-ini-perl{a} libconfig-mvp-perl{a} libconfig-mvp-reader-ini-perl{a} libcpan-uploader-perl{a} libcpanel-json-xs-perl{a} libcurl4{a} libdata-optlist-perl{a} libdata-section-perl{a} libdata-stag-perl{a} libdatetime-locale-perl{a} libdatetime-perl{a} libdatetime-timezone-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdist-zilla-perl{a} libdist-zilla-plugin-podweaver-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libenv-path-perl{a} libeval-closure-perl{a} libexception-class-perl{a} libexpat1{a} libexporter-tiny-perl{a} libfile-copy-recursive-perl{a} libfile-find-rule-perl{a} libfile-grep-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-pushd-perl{a} libfile-sharedir-install-perl{a} libfile-sharedir-perl{a} libfile-slurp-tiny-perl{a} libfile-slurper-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfindbin-libs-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgetopt-long-descriptive-perl{a} libgfortran5{a} libglib2.0-0{a} libgraph-perl{a} libgraph-readwrite-perl{a} libgraphite2-3{a} libharfbuzz0b{a} libhash-merge-simple-perl{a} libheap-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu67{a} libimport-into-perl{a} libio-all-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libio-stringy-perl{a} libio-tiecombine-perl{a} libjbig0{a} libjpeg62-turbo{a} libjson-maybexs-perl{a} libjson-perl{a} liblapack3{a} libldap-2.4-2{a} liblist-moreutils-perl{a} liblist-moreutils-xs-perl{a} liblmdb0{a} liblog-dispatch-array-perl{a} liblog-dispatch-perl{a} liblog-dispatchouli-perl{a} liblog-log4perl-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmixin-linewise-perl{a} libmodule-implementation-perl{a} libmodule-path-perl{a} libmodule-pluggable-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoo-perl{a} libmoose-autobox-perl{a} libmoose-perl{a} libmoosex-lazyrequire-perl{a} libmoosex-oneargnew-perl{a} libmoosex-role-parameterized-perl{a} libmoosex-setonce-perl{a} libmoosex-types-perl{a} libmoosex-types-perl-perl{a} libmpdec3{a} libmro-compat-perl{a} libnamespace-autoclean-perl{a} libnamespace-clean-perl{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnumber-compare-perl{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libparams-validate-perl{a} libparams-validationcompiler-perl{a} libparse-yapp-perl{a} libpath-tiny-perl{a} libperl-prereqscanner-perl{a} libperl-version-perl{a} libperlio-utf8-strict-perl{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpod-elemental-perl{a} libpod-elemental-perlmunger-perl{a} libpod-eventual-perl{a} libpod-weaver-perl{a} libppi-perl{a} libprocps8{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librole-hasmessage-perl{a} librole-identifiable-perl{a} librole-tiny-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscope-guard-perl{a} libsensors-config{a} libsensors5{a} libset-object-perl{a} libsigsegv2{a} libsm6{a} libsoftware-license-perl{a} libspecio-perl{a} libspiffy-perl{a} libssh2-1{a} libstrictures-perl{a} libstring-errf-perl{a} libstring-flogger-perl{a} libstring-formatter-perl{a} libstring-rewriteprefix-perl{a} libstring-truncate-perl{a} libsub-exporter-formethods-perl{a} libsub-exporter-globexporter-perl{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libsub-quote-perl{a} libsub-uplevel-perl{a} libsyntax-keyword-junction-perl{a} libsyntax-perl{a} libtask-weaken-perl{a} libtcl8.6{a} libterm-encoding-perl{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-file-perl{a} libtest-files-perl{a} libtest-most-perl{a} libtest-output-perl{a} libtest-warn-perl{a} libtext-csv-perl{a} libtext-diff-perl{a} libtext-glob-perl{a} libtext-template-perl{a} libthai-data{a} libthai0{a} libthrowable-perl{a} libtie-ixhash-perl{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp6{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml-parser-perl{a} libxml-writer-perl{a} libxml2{a} libxrender1{a} libxss1{a} libxstring-perl{a} libxt6{a} libyaml-tiny-perl{a} m4{a} mafft{a} man-db{a} mcl{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} openssl{a} parallel{a} perl-openssl-defaults{a} po-debconf{a} prank{a} procps{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} r-base-core{a} readline-common{a} sensible-utils{a} sysstat{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bash-completion bcron bioperl-run cpanminus cron curl devscripts libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarchive-tar-wrapper-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclass-c3-xs-perl libclass-xsaccessor-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libgd-perl libglib2.0-data libgpm2 libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libipc-shareable-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libmailtools-perl libmime-lite-perl libmldbm-perl libnet-dbus-perl libpod-coverage-trustpod-perl libpostscript-perl libref-util-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libterm-readline-gnu-perl libterm-ui-perl libtest-cpan-meta-perl libtest-pod-coverage-perl libtest-pod-perl libtext-csv-xs-perl libunicode-utf8-perl libx11-protocol-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libyaml-perl lynx perl-doc perl-tk psmisc publicsuffix r-base-dev r-doc-html r-recommended ruby shared-mime-info systemd systemd-cron wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 303 newly installed, 0 to remove and 0 not upgraded.
Need to get 95.7 MB of archives. After unpacking 290 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB]
Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB]
Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB]
Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB]
Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB]
Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB]
Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB]
Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB]
Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB]
Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB]
Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB]
Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB]
Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB]
Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get: 18 http://deb.debian.org/debian bullseye/main armhf netbase all 6.3 [19.9 kB]
Get: 19 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB]
Get: 20 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB]
Get: 21 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB]
Get: 22 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get: 23 http://deb.debian.org/debian bullseye/main armhf openssl armhf 1.1.1k-1 [826 kB]
Get: 24 http://deb.debian.org/debian bullseye/main armhf ca-certificates all 20210119 [158 kB]
Get: 25 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get: 26 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get: 27 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB]
Get: 28 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB]
Get: 29 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB]
Get: 30 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB]
Get: 31 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB]
Get: 32 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB]
Get: 33 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 34 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB]
Get: 35 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB]
Get: 36 http://deb.debian.org/debian bullseye/main armhf bedtools armhf 2.30.0+dfsg-1 [573 kB]
Get: 37 http://deb.debian.org/debian bullseye/main armhf libio-string-perl all 1.08-3.1 [11.8 kB]
Get: 38 http://deb.debian.org/debian bullseye/main armhf libdata-stag-perl all 0.14-2 [448 kB]
Get: 39 http://deb.debian.org/debian bullseye/main armhf libbio-perl-perl all 1.7.7-2 [2607 kB]
Get: 40 http://deb.debian.org/debian bullseye/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get: 41 http://deb.debian.org/debian bullseye/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get: 42 http://deb.debian.org/debian bullseye/main armhf libexception-class-perl all 1.44-1 [32.3 kB]
Get: 43 http://deb.debian.org/debian bullseye/main armhf libtest-deep-perl all 1.130-1 [49.3 kB]
Get: 44 http://deb.debian.org/debian bullseye/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get: 45 http://deb.debian.org/debian bullseye/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 46 http://deb.debian.org/debian bullseye/main armhf libtext-diff-perl all 1.45-1 [27.7 kB]
Get: 47 http://deb.debian.org/debian bullseye/main armhf libtest-differences-perl all 0.67-1 [18.7 kB]
Get: 48 http://deb.debian.org/debian bullseye/main armhf libsub-uplevel-perl all 0.2800-1.1 [16.5 kB]
Get: 49 http://deb.debian.org/debian bullseye/main armhf libtest-exception-perl all 0.43-1 [18.7 kB]
Get: 50 http://deb.debian.org/debian bullseye/main armhf libtest-warn-perl all 0.36-1 [16.2 kB]
Get: 51 http://deb.debian.org/debian bullseye/main armhf libtest-most-perl all 0.37-1 [24.9 kB]
Get: 52 http://deb.debian.org/debian bullseye/main armhf bioperl all 1.7.7-2 [246 kB]
Get: 53 http://deb.debian.org/debian bullseye/main armhf cd-hit armhf 4.8.1-3 [499 kB]
Get: 54 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get: 55 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB]
Get: 56 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 57 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 58 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get: 59 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 60 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 61 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB]
Get: 62 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB]
Get: 63 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB]
Get: 64 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB]
Get: 65 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB]
Get: 66 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 67 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 68 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB]
Get: 69 http://deb.debian.org/debian bullseye/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get: 70 http://deb.debian.org/debian bullseye/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get: 71 http://deb.debian.org/debian bullseye/main armhf libdata-optlist-perl all 0.110-1.1 [10.8 kB]
Get: 72 http://deb.debian.org/debian bullseye/main armhf libb-hooks-op-check-perl armhf 0.22-1+b3 [11.0 kB]
Get: 73 http://deb.debian.org/debian bullseye/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get: 74 http://deb.debian.org/debian bullseye/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get: 75 http://deb.debian.org/debian bullseye/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.5 kB]
Get: 76 http://deb.debian.org/debian bullseye/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get: 77 http://deb.debian.org/debian bullseye/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get: 78 http://deb.debian.org/debian bullseye/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get: 79 http://deb.debian.org/debian bullseye/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get: 80 http://deb.debian.org/debian bullseye/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get: 81 http://deb.debian.org/debian bullseye/main armhf libio-stringy-perl all 2.111-3 [56.5 kB]
Get: 82 http://deb.debian.org/debian bullseye/main armhf libparams-validate-perl armhf 1.30-1+b1 [65.6 kB]
Get: 83 http://deb.debian.org/debian bullseye/main armhf libsub-exporter-perl all 0.987-1 [47.2 kB]
Get: 84 http://deb.debian.org/debian bullseye/main armhf libgetopt-long-descriptive-perl all 0.105-1 [28.4 kB]
Get: 85 http://deb.debian.org/debian bullseye/main armhf libio-tiecombine-perl all 1.005-1.1 [11.1 kB]
Get: 86 http://deb.debian.org/debian bullseye/main armhf libmodule-pluggable-perl all 5.2-1 [25.7 kB]
Get: 87 http://deb.debian.org/debian bullseye/main armhf libstring-rewriteprefix-perl all 0.008-1 [6980 B]
Get: 88 http://deb.debian.org/debian bullseye/main armhf libapp-cmd-perl all 0.331-1 [63.9 kB]
Get: 89 http://deb.debian.org/debian bullseye/main armhf libscope-guard-perl all 0.21-1.1 [7876 B]
Get: 90 http://deb.debian.org/debian bullseye/main armhf libautobox-perl armhf 3.0.1-1+b3 [33.7 kB]
Get: 91 http://deb.debian.org/debian bullseye/main armhf libperlio-utf8-strict-perl armhf 0.008-1+b1 [11.5 kB]
Get: 92 http://deb.debian.org/debian bullseye/main armhf libmixin-linewise-perl all 0.108-1.1 [13.3 kB]
Get: 93 http://deb.debian.org/debian bullseye/main armhf libconfig-ini-perl all 1:0.025-1.1 [22.9 kB]
Get: 94 http://deb.debian.org/debian bullseye/main armhf libclass-load-xs-perl armhf 0.10-1+b5 [14.2 kB]
Get: 95 http://deb.debian.org/debian bullseye/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get: 96 http://deb.debian.org/debian bullseye/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get: 97 http://deb.debian.org/debian bullseye/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get: 98 http://deb.debian.org/debian bullseye/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get: 99 http://deb.debian.org/debian bullseye/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get: 100 http://deb.debian.org/debian bullseye/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get: 101 http://deb.debian.org/debian bullseye/main armhf libdevel-overloadinfo-perl all 0.005-1 [7212 B]
Get: 102 http://deb.debian.org/debian bullseye/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get: 103 http://deb.debian.org/debian bullseye/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get: 104 http://deb.debian.org/debian bullseye/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get: 105 http://deb.debian.org/debian bullseye/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get: 106 http://deb.debian.org/debian bullseye/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get: 107 http://deb.debian.org/debian bullseye/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.6 kB]
Get: 108 http://deb.debian.org/debian bullseye/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get: 109 http://deb.debian.org/debian bullseye/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get: 110 http://deb.debian.org/debian bullseye/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get: 111 http://deb.debian.org/debian bullseye/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get: 112 http://deb.debian.org/debian bullseye/main armhf libnamespace-autoclean-perl all 0.29-1 [15.0 kB]
Get: 113 http://deb.debian.org/debian bullseye/main armhf libmoosex-role-parameterized-perl all 1.11-1 [43.2 kB]
Get: 114 http://deb.debian.org/debian bullseye/main armhf libmoosex-oneargnew-perl all 0.005-1 [7284 B]
Get: 115 http://deb.debian.org/debian bullseye/main armhf libcpanel-json-xs-perl armhf 4.25-1+b1 [127 kB]
Get: 116 http://deb.debian.org/debian bullseye/main armhf libjson-maybexs-perl all 1.004003-1 [13.1 kB]
Get: 117 http://deb.debian.org/debian bullseye/main armhf libstring-formatter-perl all 0.102084-1.1 [20.2 kB]
Get: 118 http://deb.debian.org/debian bullseye/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 119 http://deb.debian.org/debian bullseye/main armhf libstring-errf-perl all 0.008-1.1 [12.8 kB]
Get: 120 http://deb.debian.org/debian bullseye/main armhf librole-hasmessage-perl all 0.006-1.1 [7728 B]
Get: 121 http://deb.debian.org/debian bullseye/main armhf librole-identifiable-perl all 0.007-1 [7332 B]
Get: 122 http://deb.debian.org/debian bullseye/main armhf libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get: 123 http://deb.debian.org/debian bullseye/main armhf libimport-into-perl all 1.002005-1 [11.6 kB]
Get: 124 http://deb.debian.org/debian bullseye/main armhf librole-tiny-perl all 2.002004-1 [21.4 kB]
Get: 125 http://deb.debian.org/debian bullseye/main armhf libstrictures-perl all 2.000006-1 [18.6 kB]
Get: 126 http://deb.debian.org/debian bullseye/main armhf libsub-quote-perl all 2.006006-1 [21.0 kB]
Get: 127 http://deb.debian.org/debian bullseye/main armhf libmoo-perl all 2.004004-1 [59.9 kB]
Get: 128 http://deb.debian.org/debian bullseye/main armhf libthrowable-perl all 0.200013-1.1 [14.2 kB]
Get: 129 http://deb.debian.org/debian bullseye/main armhf libtie-ixhash-perl all 1.23-2.1 [11.8 kB]
Get: 130 http://deb.debian.org/debian bullseye/main armhf libconfig-mvp-perl all 2.200012-1 [44.9 kB]
Get: 131 http://deb.debian.org/debian bullseye/main armhf libconfig-mvp-reader-ini-perl all 2.101463-1.1 [6016 B]
Get: 132 http://deb.debian.org/debian bullseye/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get: 133 http://deb.debian.org/debian bullseye/main armhf libfile-homedir-perl all 1.006-1 [43.8 kB]
Get: 134 http://deb.debian.org/debian bullseye/main armhf perl-openssl-defaults armhf 5 [7360 B]
Get: 135 http://deb.debian.org/debian bullseye/main armhf libnet-ssleay-perl armhf 1.88-3+b1 [303 kB]
Get: 136 http://deb.debian.org/debian bullseye/main armhf libio-socket-ssl-perl all 2.069-1 [215 kB]
Get: 137 http://deb.debian.org/debian bullseye/main armhf liburi-perl all 5.08-1 [90.6 kB]
Get: 138 http://deb.debian.org/debian bullseye/main armhf libnet-http-perl all 6.20-1 [25.1 kB]
Get: 139 http://deb.debian.org/debian bullseye/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get: 140 http://deb.debian.org/debian bullseye/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get: 141 http://deb.debian.org/debian bullseye/main armhf libfile-listing-perl all 6.14-1 [12.4 kB]
Get: 142 http://deb.debian.org/debian bullseye/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get: 143 http://deb.debian.org/debian bullseye/main armhf libhtml-parser-perl armhf 3.75-1+b1 [102 kB]
Get: 144 http://deb.debian.org/debian bullseye/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get: 145 http://deb.debian.org/debian bullseye/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get: 146 http://deb.debian.org/debian bullseye/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get: 147 http://deb.debian.org/debian bullseye/main armhf libhttp-message-perl all 6.28-1 [79.6 kB]
Get: 148 http://deb.debian.org/debian bullseye/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get: 149 http://deb.debian.org/debian bullseye/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get: 150 http://deb.debian.org/debian bullseye/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 151 http://deb.debian.org/debian bullseye/main armhf libwww-perl all 6.52-1 [192 kB]
Get: 152 http://deb.debian.org/debian bullseye/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get: 153 http://deb.debian.org/debian bullseye/main armhf libterm-readkey-perl armhf 2.38-1+b2 [26.6 kB]
Get: 154 http://deb.debian.org/debian bullseye/main armhf libcpan-uploader-perl all 0.103015-1 [16.3 kB]
Get: 155 http://deb.debian.org/debian bullseye/main armhf libdata-section-perl all 0.200007-1 [13.4 kB]
Get: 156 http://deb.debian.org/debian bullseye/main armhf libclass-inspector-perl all 1.36-1 [19.6 kB]
Get: 157 http://deb.debian.org/debian bullseye/main armhf libfile-sharedir-perl all 1.118-1 [17.3 kB]
Get: 158 http://deb.debian.org/debian bullseye/main armhf libparams-validationcompiler-perl all 0.30-1 [31.6 kB]
Get: 159 http://deb.debian.org/debian bullseye/main armhf libxstring-perl armhf 0.005-1+b1 [7924 B]
Get: 160 http://deb.debian.org/debian bullseye/main armhf libspecio-perl all 0.47-1 [145 kB]
Get: 161 http://deb.debian.org/debian bullseye/main armhf libdatetime-locale-perl all 1:1.31-1 [2604 kB]
Get: 162 http://deb.debian.org/debian bullseye/main armhf libclass-singleton-perl all 1.6-1 [13.5 kB]
Get: 163 http://deb.debian.org/debian bullseye/main armhf libdatetime-timezone-perl all 1:2.47-1+2021a [284 kB]
Get: 164 http://deb.debian.org/debian bullseye/main armhf libdatetime-perl armhf 2:1.54-1 [122 kB]
Get: 165 http://deb.debian.org/debian bullseye/main armhf libfile-copy-recursive-perl all 0.45-1 [21.2 kB]
Get: 166 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B]
Get: 167 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B]
Get: 168 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB]
Get: 169 http://deb.debian.org/debian bullseye/main armhf libfile-pushd-perl all 1.016-1 [13.9 kB]
Get: 170 http://deb.debian.org/debian bullseye/main armhf libfile-sharedir-install-perl all 0.13-1.1 [12.3 kB]
Get: 171 http://deb.debian.org/debian bullseye/main armhf libhash-merge-simple-perl all 0.051-2.1 [8004 B]
Get: 172 http://deb.debian.org/debian bullseye/main armhf libjson-perl all 4.03000-1 [88.6 kB]
Get: 173 http://deb.debian.org/debian bullseye/main armhf liblog-dispatch-perl all 2.70-1 [78.4 kB]
Get: 174 http://deb.debian.org/debian bullseye/main armhf liblog-dispatch-array-perl all 1.003-1 [5696 B]
Get: 175 http://deb.debian.org/debian bullseye/main armhf libstring-flogger-perl all 1.101245-2 [6788 B]
Get: 176 http://deb.debian.org/debian bullseye/main armhf libsub-exporter-globexporter-perl all 0.005-1 [7784 B]
Get: 177 http://deb.debian.org/debian bullseye/main armhf liblog-dispatchouli-perl all 2.022-1 [27.4 kB]
Get: 178 http://deb.debian.org/debian bullseye/main armhf libexporter-tiny-perl all 1.002002-1 [37.8 kB]
Get: 179 http://deb.debian.org/debian bullseye/main armhf liblist-moreutils-xs-perl armhf 0.430-2 [35.5 kB]
Get: 180 http://deb.debian.org/debian bullseye/main armhf liblist-moreutils-perl all 0.430-2 [46.9 kB]
Get: 181 http://deb.debian.org/debian bullseye/main armhf libsyntax-perl all 0.004-1.1 [6548 B]
Get: 182 http://deb.debian.org/debian bullseye/main armhf libsyntax-keyword-junction-perl all 0.003008-1.1 [11.2 kB]
Get: 183 http://deb.debian.org/debian bullseye/main armhf libmoose-autobox-perl all 0.16-1 [52.5 kB]
Get: 184 http://deb.debian.org/debian bullseye/main armhf libaliased-perl all 0.34-1.1 [14.1 kB]
Get: 185 http://deb.debian.org/debian bullseye/main armhf libmoosex-lazyrequire-perl all 0.11-1.1 [8928 B]
Get: 186 http://deb.debian.org/debian bullseye/main armhf libmoosex-setonce-perl all 0.200002-1.1 [6344 B]
Get: 187 http://deb.debian.org/debian bullseye/main armhf libcarp-clan-perl all 6.08-1 [15.6 kB]
Get: 188 http://deb.debian.org/debian bullseye/main armhf libsub-exporter-formethods-perl all 0.100052-1 [7598 B]
Get: 189 http://deb.debian.org/debian bullseye/main armhf libmoosex-types-perl all 0.50-1 [54.2 kB]
Get: 190 http://deb.debian.org/debian bullseye/main armhf libmoosex-types-perl-perl all 0.101343-1.1 [7612 B]
Get: 191 http://deb.debian.org/debian bullseye/main armhf libpath-tiny-perl all 0.118-1 [53.5 kB]
Get: 192 http://deb.debian.org/debian bullseye/main armhf libmodule-path-perl all 0.19-1.1 [12.3 kB]
Get: 193 http://deb.debian.org/debian bullseye/main armhf libclone-perl armhf 0.45-1+b1 [14.8 kB]
Get: 194 http://deb.debian.org/debian bullseye/main armhf libtask-weaken-perl all 1.06-1 [9252 B]
Get: 195 http://deb.debian.org/debian bullseye/main armhf libppi-perl all 1.270-1 [317 kB]
Get: 196 http://deb.debian.org/debian bullseye/main armhf libperl-prereqscanner-perl all 1.023-1 [35.8 kB]
Get: 197 http://deb.debian.org/debian bullseye/main armhf libfile-slurp-tiny-perl all 0.004-1 [7288 B]
Get: 198 http://deb.debian.org/debian bullseye/main armhf libperl-version-perl all 1.013-2 [28.0 kB]
Get: 199 http://deb.debian.org/debian bullseye/main armhf libtext-template-perl all 1.59-1 [54.3 kB]
Get: 200 http://deb.debian.org/debian bullseye/main armhf libsoftware-license-perl all 0.103014-2 [113 kB]
Get: 201 http://deb.debian.org/debian bullseye/main armhf libterm-encoding-perl all 0.03-1 [5300 B]
Get: 202 http://deb.debian.org/debian bullseye/main armhf libyaml-tiny-perl all 1.73-1 [32.3 kB]
Get: 203 http://deb.debian.org/debian bullseye/main armhf libdist-zilla-perl all 6.017-1 [342 kB]
Get: 204 http://deb.debian.org/debian bullseye/main armhf dh-dist-zilla all 1.4.1 [17.9 kB]
Get: 205 http://deb.debian.org/debian bullseye/main armhf fasttree armhf 2.1.11-2 [169 kB]
Get: 206 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB]
Get: 207 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB]
Get: 208 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB]
Get: 209 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get: 210 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get: 211 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB]
Get: 212 http://deb.debian.org/debian bullseye/main armhf fontconfig armhf 2.13.1-4.2 [415 kB]
Get: 213 http://deb.debian.org/debian bullseye/main armhf libarray-utils-perl all 0.5-1.1 [5796 B]
Get: 214 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB]
Get: 215 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB]
Get: 216 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get: 217 http://deb.debian.org/debian bullseye/main armhf libpixman-1-0 armhf 0.40.0-1 [466 kB]
Get: 218 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB]
Get: 219 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get: 220 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get: 221 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.1-1 [310 kB]
Get: 222 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.1-1 [712 kB]
Get: 223 http://deb.debian.org/debian bullseye/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get: 224 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get: 225 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get: 226 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get: 227 http://deb.debian.org/debian bullseye/main armhf libcairo2 armhf 1.16.0-5 [615 kB]
Get: 228 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB]
Get: 229 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB]
Get: 230 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB]
Get: 231 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB]
Get: 232 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB]
Get: 233 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB]
Get: 234 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB]
Get: 235 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB]
Get: 236 http://deb.debian.org/debian bullseye/main armhf libdatrie1 armhf 0.2.13-1 [39.4 kB]
Get: 237 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB]
Get: 238 http://deb.debian.org/debian bullseye/main armhf libpod-eventual-perl all 0.094001-1.1 [12.6 kB]
Get: 239 http://deb.debian.org/debian bullseye/main armhf libstring-truncate-perl all 1.100602-1.1 [9760 B]
Get: 240 http://deb.debian.org/debian bullseye/main armhf libpod-elemental-perl all 0.103005-1 [61.9 kB]
Get: 241 http://deb.debian.org/debian bullseye/main armhf libpod-elemental-perlmunger-perl all 0.200006-1.1 [10.4 kB]
Get: 242 http://deb.debian.org/debian bullseye/main armhf libpod-weaver-perl all 4.015-1 [64.6 kB]
Get: 243 http://deb.debian.org/debian bullseye/main armhf libdist-zilla-plugin-podweaver-perl all 4.008-1.1 [9096 B]
Get: 244 http://deb.debian.org/debian bullseye/main armhf libenv-path-perl all 0.19-2 [19.5 kB]
Get: 245 http://deb.debian.org/debian bullseye/main armhf libfile-grep-perl all 0.02-1.1 [7904 B]
Get: 246 http://deb.debian.org/debian bullseye/main armhf libfile-slurper-perl all 0.012-1 [8344 B]
Get: 247 http://deb.debian.org/debian bullseye/main armhf libfindbin-libs-perl all 2.190.02-1 [30.3 kB]
Get: 248 http://deb.debian.org/debian bullseye/main armhf libfribidi0 armhf 1.0.8-2 [62.9 kB]
Get: 249 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB]
Get: 250 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB]
Get: 251 http://deb.debian.org/debian bullseye/main armhf libheap-perl all 0.80-3 [34.2 kB]
Get: 252 http://deb.debian.org/debian bullseye/main armhf libset-object-perl armhf 1.41-1 [38.3 kB]
Get: 253 http://deb.debian.org/debian bullseye/main armhf libgraph-perl all 1:0.9716-2 [109 kB]
Get: 254 http://deb.debian.org/debian bullseye/main armhf libspiffy-perl all 0.46-1 [25.7 kB]
Get: 255 http://deb.debian.org/debian bullseye/main armhf libio-all-perl all 0.87-1 [66.7 kB]
Get: 256 http://deb.debian.org/debian bullseye/main armhf libparse-yapp-perl all 1.21-2 [46.9 kB]
Get: 257 http://deb.debian.org/debian bullseye/main armhf libxml-parser-perl armhf 2.46-2 [203 kB]
Get: 258 http://deb.debian.org/debian bullseye/main armhf libxml-writer-perl all 0.900-1 [29.9 kB]
Get: 259 http://deb.debian.org/debian bullseye/main armhf libgraph-readwrite-perl all 2.09-1.1 [44.9 kB]
Get: 260 http://deb.debian.org/debian bullseye/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB]
Get: 261 http://deb.debian.org/debian bullseye/main armhf libharfbuzz0b armhf 2.7.4-1 [1427 kB]
Get: 262 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB]
Get: 263 http://deb.debian.org/debian bullseye/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB]
Get: 264 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB]
Get: 265 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB]
Get: 266 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB]
Get: 267 http://deb.debian.org/debian bullseye/main armhf liblmdb0 armhf 0.9.24-1 [38.7 kB]
Get: 268 http://deb.debian.org/debian bullseye/main armhf liblog-log4perl-perl all 1.54-1 [378 kB]
Get: 269 http://deb.debian.org/debian bullseye/main armhf libmbedcrypto3 armhf 2.16.9-0.1 [199 kB]
Get: 270 http://deb.debian.org/debian bullseye/main armhf libmbedx509-0 armhf 2.16.9-0.1 [105 kB]
Get: 271 http://deb.debian.org/debian bullseye/main armhf libmbedtls12 armhf 2.16.9-0.1 [131 kB]
Get: 272 http://deb.debian.org/debian bullseye/main armhf libthai-data all 0.1.28-3 [170 kB]
Get: 273 http://deb.debian.org/debian bullseye/main armhf libthai0 armhf 0.1.28-3 [50.9 kB]
Get: 274 http://deb.debian.org/debian bullseye/main armhf libpango-1.0-0 armhf 1.46.2-3 [173 kB]
Get: 275 http://deb.debian.org/debian bullseye/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [56.1 kB]
Get: 276 http://deb.debian.org/debian bullseye/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.8 kB]
Get: 277 http://deb.debian.org/debian bullseye/main armhf libpaper1 armhf 1.1.28+b1 [20.8 kB]
Get: 278 http://deb.debian.org/debian bullseye/main armhf libpaper-utils armhf 1.1.28+b1 [17.9 kB]
Get: 279 http://deb.debian.org/debian bullseye/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB]
Get: 280 http://deb.debian.org/debian bullseye/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB]
Get: 281 http://deb.debian.org/debian bullseye/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB]
Get: 282 http://deb.debian.org/debian bullseye/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [913 kB]
Get: 283 http://deb.debian.org/debian bullseye/main armhf libtest-file-perl all 1.444-1 [24.2 kB]
Get: 284 http://deb.debian.org/debian bullseye/main armhf libtest-files-perl all 0.15-1 [12.0 kB]
Get: 285 http://deb.debian.org/debian bullseye/main armhf libtest-output-perl all 1.033-1 [16.8 kB]
Get: 286 http://deb.debian.org/debian bullseye/main armhf libtext-csv-perl all 2.00-1 [105 kB]
Get: 287 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1 [226 kB]
Get: 288 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1 [271 kB]
Get: 289 http://deb.debian.org/debian bullseye/main armhf libxft2 armhf 2.3.2-2 [50.1 kB]
Get: 290 http://deb.debian.org/debian bullseye/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB]
Get: 291 http://deb.debian.org/debian bullseye/main armhf libtk8.6 armhf 8.6.11-2 [693 kB]
Get: 292 http://deb.debian.org/debian bullseye/main armhf libxt6 armhf 1:1.2.0-1 [161 kB]
Get: 293 http://deb.debian.org/debian bullseye/main armhf mafft armhf 7.475-1 [766 kB]
Get: 294 http://deb.debian.org/debian bullseye/main armhf mcl armhf 1:14-137+ds-9+b1 [461 kB]
Get: 295 http://deb.debian.org/debian bullseye/main armhf ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB]
Get: 296 http://deb.debian.org/debian bullseye/main armhf ncbi-blast+ armhf 2.11.0+ds-1 [9741 kB]
Get: 297 http://deb.debian.org/debian bullseye/main armhf sysstat armhf 12.5.2-2 [572 kB]
Get: 298 http://deb.debian.org/debian bullseye/main armhf parallel all 20161222-1.1 [306 kB]
Get: 299 http://deb.debian.org/debian bullseye/main armhf prank armhf 0.0.170427+dfsg-3 [342 kB]
Get: 300 http://deb.debian.org/debian bullseye/main armhf zip armhf 3.0-12 [222 kB]
Get: 301 http://deb.debian.org/debian bullseye/main armhf unzip armhf 6.0-26 [157 kB]
Get: 302 http://deb.debian.org/debian bullseye/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 303 http://deb.debian.org/debian bullseye/main armhf r-base-core armhf 4.0.4-1 [24.8 MB]
Fetched 95.7 MB in 24s (3996 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking python3.9-minimal (3.9.2-1) ...
Setting up libpython3.9-minimal:armhf (3.9.2-1) ...
Setting up libexpat1:armhf (2.2.10-2) ...
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Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel'
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Setting up liblmdb0:armhf (0.9.24-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libfile-sharedir-install-perl (0.13-1.1) ...
Setting up ncbi-data (6.1.20170106+dfsg1-9) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
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Setting up libpsl5:armhf (0.21.0-1.2) ...
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Setting up libhash-merge-simple-perl (0.051-2.1) ...
Setting up bsdextrautils (2.36.1-7) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
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Setting up libclass-inspector-perl (1.36-1) ...
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Setting up libdynaloader-functions-perl (0.003-1.1) ...
Setting up libdatrie1:armhf (0.2.13-1) ...
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Setting up libtest-deep-perl (1.130-1) ...
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
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Setting up autotools-dev (20180224.1+nmu1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
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Creating config file /etc/default/sysstat with new version
update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Creating config file /etc/papersize with new version
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Setting up libsub-exporter-formethods-perl (0.100052-1) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up dh-autoreconf (20) ...
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Setting up libstring-formatter-perl (0.102084-1.1) ...
Setting up parallel (20161222-1.1) ...
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Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libsub-exporter-globexporter-perl (0.005-1) ...
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Setting up python3.9 (3.9.2-1) ...
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Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
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Setting up libmoo-perl (2.004004-1) ...
Setting up libtk8.6:armhf (8.6.11-2) ...
Setting up libpango-1.0-0:armhf (1.46.2-3) ...
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Setting up libpod-eventual-perl (0.094001-1.1) ...
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done.
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fakeroot is already the newest version (1.25.3-1.1).
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  usrmerge
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The system has been successfully converted.
I: Building the package
hostname: Name or service not known
I: Running cd /build/roary-3.13.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../roary_3.13.0+dfsg-1_source.changes
dpkg-buildpackage: info: source package roary
dpkg-buildpackage: info: source version 3.13.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Sascha Steinbiss <satta@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with dist-zilla
   dh_dzil_clean
   dh_clean
 debian/rules build
dh build --with dist-zilla
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_dzil_build
make[1]: Entering directory '/build/roary-3.13.0+dfsg'
mv bin/create_pan_genome_plots.R bin/create_pan_genome_plots
dh_dzil_build --
[DZ] beginning to build Bio-Roary
[DZ] writing Bio-Roary in .build/debian-build
[DZ] built in .build/debian-build
make[1]: Leaving directory '/build/roary-3.13.0+dfsg'
   dh_auto_configure -D .build/debian-build
	cd .build/debian-build && perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/build/roary-3.13.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/build/roary-3.13.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Warning: prerequisite Digest::MD5::File 0 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Roary
Writing MYMETA.yml and MYMETA.json
   dh_auto_build -D .build/debian-build
	cd .build/debian-build && make -j4
make[1]: Entering directory '/build/roary-3.13.0+dfsg/.build/debian-build'
cp lib/Bio/Roary/AnnotateGroups.pm blib/lib/Bio/Roary/AnnotateGroups.pm
cp lib/Bio/Roary/AccessoryClustering.pm blib/lib/Bio/Roary/AccessoryClustering.pm
cp lib/Bio/Roary/BedFromGFFRole.pm blib/lib/Bio/Roary/BedFromGFFRole.pm
cp lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm blib/lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm
cp lib/Bio/Roary/CommandLine/IterativeCdhit.pm blib/lib/Bio/Roary/CommandLine/IterativeCdhit.pm
cp lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm blib/lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
cp lib/Bio/Roary/AccessoryBinaryFasta.pm blib/lib/Bio/Roary/AccessoryBinaryFasta.pm
cp lib/Bio/Roary/AssemblyStatistics.pm blib/lib/Bio/Roary/AssemblyStatistics.pm
cp lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm blib/lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
cp lib/Bio/Roary/CommandLine/Common.pm blib/lib/Bio/Roary/CommandLine/Common.pm
cp lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm blib/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
cp lib/Bio/Roary/Exceptions.pm blib/lib/Bio/Roary/Exceptions.pm
cp lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm blib/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
cp lib/Bio/Roary/External/Cdhit.pm blib/lib/Bio/Roary/External/Cdhit.pm
cp lib/Bio/Roary.pm blib/lib/Bio/Roary.pm
cp lib/Bio/Roary/CommandLine/AssemblyStatistics.pm blib/lib/Bio/Roary/CommandLine/AssemblyStatistics.pm
cp lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm blib/lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
cp lib/Bio/Roary/CombinedProteome.pm blib/lib/Bio/Roary/CombinedProteome.pm
cp lib/Bio/Roary/External/Blastp.pm blib/lib/Bio/Roary/External/Blastp.pm
cp lib/Bio/Roary/CommandLine/QueryRoary.pm blib/lib/Bio/Roary/CommandLine/QueryRoary.pm
cp lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm blib/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
cp lib/Bio/Roary/AnalyseGroups.pm blib/lib/Bio/Roary/AnalyseGroups.pm
cp lib/Bio/Roary/CommandLine/CreatePanGenome.pm blib/lib/Bio/Roary/CommandLine/CreatePanGenome.pm
cp lib/Bio/Roary/External/CheckTools.pm blib/lib/Bio/Roary/External/CheckTools.pm
cp lib/Bio/Roary/ChunkFastaFile.pm blib/lib/Bio/Roary/ChunkFastaFile.pm
cp lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm blib/lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
cp lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/CommandLine/Roary.pm blib/lib/Bio/Roary/CommandLine/Roary.pm
cp lib/Bio/Roary/ClustersRole.pm blib/lib/Bio/Roary/ClustersRole.pm
cp lib/Bio/Roary/GroupStatistics.pm blib/lib/Bio/Roary/GroupStatistics.pm
cp lib/Bio/Roary/JobRunner/Parallel.pm blib/lib/Bio/Roary/JobRunner/Parallel.pm
cp lib/Bio/Roary/OrderGenes.pm blib/lib/Bio/Roary/OrderGenes.pm
cp lib/Bio/Roary/External/Fasttree.pm blib/lib/Bio/Roary/External/Fasttree.pm
cp lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm blib/lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
cp lib/Bio/Roary/FilterFullClusters.pm blib/lib/Bio/Roary/FilterFullClusters.pm
cp lib/Bio/Roary/JobRunner/Role.pm blib/lib/Bio/Roary/JobRunner/Role.pm
cp lib/Bio/Roary/Output/BlastIdentityFrequency.pm blib/lib/Bio/Roary/Output/BlastIdentityFrequency.pm
cp lib/Bio/Roary/FilterUnknownsFromFasta.pm blib/lib/Bio/Roary/FilterUnknownsFromFasta.pm
cp lib/Bio/Roary/GeneNamesFromGFF.pm blib/lib/Bio/Roary/GeneNamesFromGFF.pm
cp lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm blib/lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
cp lib/Bio/Roary/ExtractProteomeFromGFF.pm blib/lib/Bio/Roary/ExtractProteomeFromGFF.pm
cp lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/LookupGeneFiles.pm blib/lib/Bio/Roary/LookupGeneFiles.pm
cp lib/Bio/Roary/MergeMultifastaAlignments.pm blib/lib/Bio/Roary/MergeMultifastaAlignments.pm
cp lib/Bio/Roary/External/Makeblastdb.pm blib/lib/Bio/Roary/External/Makeblastdb.pm
cp lib/Bio/Roary/External/Mcl.pm blib/lib/Bio/Roary/External/Mcl.pm
cp lib/Bio/Roary/Output/EMBLHeaderCommon.pm blib/lib/Bio/Roary/Output/EMBLHeaderCommon.pm
cp lib/Bio/Roary/Output/DifferenceBetweenSets.pm blib/lib/Bio/Roary/Output/DifferenceBetweenSets.pm
cp lib/Bio/Roary/IterativeCdhit.pm blib/lib/Bio/Roary/IterativeCdhit.pm
cp lib/Bio/Roary/JobRunner/Local.pm blib/lib/Bio/Roary/JobRunner/Local.pm
cp lib/Bio/Roary/External/Mafft.pm blib/lib/Bio/Roary/External/Mafft.pm
cp lib/Bio/Roary/Output/GroupMultifasta.pm blib/lib/Bio/Roary/Output/GroupMultifasta.pm
cp lib/Bio/Roary/GroupLabels.pm blib/lib/Bio/Roary/GroupLabels.pm
cp lib/Bio/Roary/External/IterativeCdhit.pm blib/lib/Bio/Roary/External/IterativeCdhit.pm
cp lib/Bio/Roary/ExtractProteomeFromGFFs.pm blib/lib/Bio/Roary/ExtractProteomeFromGFFs.pm
cp lib/Bio/Roary/Output/EmblGroups.pm blib/lib/Bio/Roary/Output/EmblGroups.pm
cp lib/Bio/Roary/External/Prank.pm blib/lib/Bio/Roary/External/Prank.pm
cp lib/Bio/Roary/External/PostAnalysis.pm blib/lib/Bio/Roary/External/PostAnalysis.pm
cp lib/Bio/Roary/InflateClusters.pm blib/lib/Bio/Roary/InflateClusters.pm
cp lib/Bio/Roary/Output/NumberOfGroups.pm blib/lib/Bio/Roary/Output/NumberOfGroups.pm
cp lib/Bio/Roary/Output/GroupsMultifastaProtein.pm blib/lib/Bio/Roary/Output/GroupsMultifastaProtein.pm
cp lib/Bio/Roary/PostAnalysis.pm blib/lib/Bio/Roary/PostAnalysis.pm
cp lib/Bio/Roary/QC/Report.pm blib/lib/Bio/Roary/QC/Report.pm
cp lib/Bio/Roary/SampleOrder.pm blib/lib/Bio/Roary/SampleOrder.pm
cp lib/Bio/Roary/PrepareInputFiles.pm blib/lib/Bio/Roary/PrepareInputFiles.pm
cp lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
cp lib/Bio/Roary/PresenceAbsenceMatrix.pm blib/lib/Bio/Roary/PresenceAbsenceMatrix.pm
cp lib/Bio/Roary/SplitGroups.pm blib/lib/Bio/Roary/SplitGroups.pm
cp lib/Bio/Roary/SpreadsheetRole.pm blib/lib/Bio/Roary/SpreadsheetRole.pm
cp lib/Bio/Roary/ParseGFFAnnotationRole.pm blib/lib/Bio/Roary/ParseGFFAnnotationRole.pm
cp lib/Bio/Roary/SortFasta.pm blib/lib/Bio/Roary/SortFasta.pm
cp lib/Bio/Roary/ParallelAllAgainstAllBlast.pm blib/lib/Bio/Roary/ParallelAllAgainstAllBlast.pm
cp lib/Bio/Roary/SequenceLengths.pm blib/lib/Bio/Roary/SequenceLengths.pm
cp lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
cp lib/Bio/Roary/Output/GroupsMultifastas.pm blib/lib/Bio/Roary/Output/GroupsMultifastas.pm
cp lib/Bio/Roary/ReformatInputGFFs.pm blib/lib/Bio/Roary/ReformatInputGFFs.pm
cp lib/Bio/Roary/Output/QueryGroups.pm blib/lib/Bio/Roary/Output/QueryGroups.pm
cp lib/Bio/Roary/UniqueGenesPerSample.pm blib/lib/Bio/Roary/UniqueGenesPerSample.pm
cp lib/Bio/Roary/ReorderSpreadsheet.pm blib/lib/Bio/Roary/ReorderSpreadsheet.pm
cp bin/create_pan_genome blib/script/create_pan_genome
cp bin/create_pan_genome_plots blib/script/create_pan_genome_plots
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome_plots
cp bin/extract_proteome_from_gff blib/script/extract_proteome_from_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/extract_proteome_from_gff
cp bin/iterative_cdhit blib/script/iterative_cdhit
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/iterative_cdhit
cp bin/pan_genome_assembly_statistics blib/script/pan_genome_assembly_statistics
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_assembly_statistics
cp bin/pan_genome_core_alignment blib/script/pan_genome_core_alignment
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_core_alignment
cp bin/pan_genome_post_analysis blib/script/pan_genome_post_analysis
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_post_analysis
cp bin/pan_genome_reorder_spreadsheet blib/script/pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_reorder_spreadsheet
cp bin/parallel_all_against_all_blastp blib/script/parallel_all_against_all_blastp
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/parallel_all_against_all_blastp
cp bin/protein_alignment_from_nucleotides blib/script/protein_alignment_from_nucleotides
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/protein_alignment_from_nucleotides
cp bin/query_pan_genome blib/script/query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/query_pan_genome
cp bin/roary blib/script/roary
cp bin/roary-create_pan_genome_plots.R blib/script/roary-create_pan_genome_plots.R
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-create_pan_genome_plots.R
cp bin/roary-pan_genome_reorder_spreadsheet blib/script/roary-pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-pan_genome_reorder_spreadsheet
cp bin/roary-query_pan_genome blib/script/roary-query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-query_pan_genome
cp bin/roary-unique_genes_per_sample blib/script/roary-unique_genes_per_sample
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-unique_genes_per_sample
cp bin/transfer_annotation_to_groups blib/script/transfer_annotation_to_groups
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/transfer_annotation_to_groups
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
make[1]: Leaving directory '/build/roary-3.13.0+dfsg/.build/debian-build'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/roary-3.13.0+dfsg'
# Hmmm, seems the test is not automatically run anyway by the build system
dh_auto_test || true
make[1]: Leaving directory '/build/roary-3.13.0+dfsg'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary
dh binary --with dist-zilla
   dh_testroot
   dh_prep
   dh_auto_install -D .build/debian-build
	cd .build/debian-build && make -j4 install DESTDIR=/build/roary-3.13.0\+dfsg/debian/roary AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/roary-3.13.0+dfsg/.build/debian-build'
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnalyseGroups.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SplitGroups.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryClustering.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SampleOrder.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterFullClusters.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/InflateClusters.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ClustersRole.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PostAnalysis.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/IterativeCdhit.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CombinedProteome.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/UniqueGenesPerSample.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SequenceLengths.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupLabels.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnnotateGroups.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupStatistics.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/OrderGenes.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Exceptions.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SortFasta.pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Common.pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Local.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Prank.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mafft.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mcl.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/CheckTools.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/QueryGroups.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EmblGroups.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/QC/Report.pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-query_pan_genome.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/iterative_cdhit.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/extract_proteome_from_gff.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/transfer_annotation_to_groups.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_post_analysis.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/protein_alignment_from_nucleotides.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/parallel_all_against_all_blastp.1p
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/create_pan_genome_plots.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_core_alignment.1p
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/query_pan_genome.1p
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SortFasta.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupLabels.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::CheckTools.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::UniqueGenesPerSample.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Prank.3pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm
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Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::UniqueGenesPerSample.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ClustersRole.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Blastp.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mafft.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::OrderGenes.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Exceptions.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SplitGroups.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SampleOrder.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::QC::Report.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::InflateClusters.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/iterative_cdhit
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-create_pan_genome_plots.R
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/create_pan_genome
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_core_alignment
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/create_pan_genome_plots
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-pan_genome_reorder_spreadsheet
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_reorder_spreadsheet
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/protein_alignment_from_nucleotides
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-query_pan_genome
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/extract_proteome_from_gff
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/parallel_all_against_all_blastp
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_post_analysis
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_assembly_statistics
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/roary
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/transfer_annotation_to_groups
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/query_pan_genome
Installing /build/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-unique_genes_per_sample
make[1]: Leaving directory '/build/roary-3.13.0+dfsg/.build/debian-build'
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_lintian
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'roary' in '../roary_3.13.0+dfsg-1_all.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../roary_3.13.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/27233/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/27233/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/27233 and its subdirectories
I: Current time: Wed Jul 21 23:38:14 +14 2021
I: pbuilder-time-stamp: 1626860294