I: pbuilder: network access will be disabled during build
I: Current time: Sat Jun 26 11:19:12 -12 2021
I: pbuilder-time-stamp: 1624749552
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [ampliconnoise_1.29-9.dsc]
I: copying [./ampliconnoise_1.29.orig.tar.gz]
I: copying [./ampliconnoise_1.29-9.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.DKT0rFpg/trustedkeys.kbx': General error
gpgv: Signature made Sat Aug 8 02:29:00 2020 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ampliconnoise_1.29-9.dsc
dpkg-source: info: extracting ampliconnoise in ampliconnoise-1.29
dpkg-source: info: unpacking ampliconnoise_1.29.orig.tar.gz
dpkg-source: info: unpacking ampliconnoise_1.29-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-path-for-data.patch
dpkg-source: info: applying fix-segfault-on-non-fasta-input.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying clang-ftbfs.patch
dpkg-source: info: applying mayhem.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1611/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='8a1332bfe04f4e27a5080ab30c625da8'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='1611'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ZDXnjymfn3/pbuilderrc_do0J --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ZDXnjymfn3/b1 --logfile b1/build.log ampliconnoise_1.29-9.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux
I: ls -l /bin
total 5776
-rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 38824 Sep 22 2020 cat
-rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 75752 Sep 22 2020 chown
-rwxr-xr-x 1 root root 157960 Sep 22 2020 cp
-rwxr-xr-x 1 root root 128724 Dec 10 2020 dash
-rwxr-xr-x 1 root root 124904 Sep 22 2020 date
-rwxr-xr-x 1 root root 92172 Sep 22 2020 dd
-rwxr-xr-x 1 root root 100752 Sep 22 2020 df
-rwxr-xr-x 1 root root 153964 Sep 22 2020 dir
-rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg
lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
-rwxr-xr-x 1 root root 34664 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
-rwxr-xr-x 1 root root 34664 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
-rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt
-rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount
-rwxr-xr-x 1 root root 210488 Nov 9 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip
-rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe
-rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip
-rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname
-rwxr-xr-x 1 root root 83980 Sep 22 2020 ln
-rwxr-xr-x 1 root root 55572 Feb 7 2020 login
-rwxr-xr-x 1 root root 153964 Sep 22 2020 ls
-rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk
-rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 58920 Feb 7 02:38 more
-rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount
-rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint
-rwxr-xr-x 1 root root 157996 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash
-rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 75720 Sep 22 2020 rm
-rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 125036 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Jun 25 21:27 sh -> dash
-rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 83880 Sep 22 2020 stty
-rwsr-xr-x 1 root root 79396 Feb 7 02:38 su
-rwxr-xr-x 1 root root 34696 Sep 22 2020 sync
-rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar
-rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 108520 Sep 22 2020 touch
-rwxr-xr-x 1 root root 34664 Sep 22 2020 true
-rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount
-rwxr-xr-x 1 root root 34664 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress
-rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl
lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat
-rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp
-rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce
-rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep
-rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless
-rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore
-rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew
I: user script /srv/workspace/pbuilder/1611/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libgsl-dev, libopenmpi-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19675 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libgsl-dev; however:
Package libgsl-dev is not installed.
pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however:
Package libopenmpi-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcbor0{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu67{a} libjs-jquery{a} libjs-jquery-ui{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libpsm-infinipath1{a} librdmacm1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libmail-sendmail-perl lynx wget xauth
0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded.
Need to get 44.4 MB of archives. After unpacking 168 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB]
Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB]
Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB]
Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB]
Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB]
Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB]
Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB]
Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB]
Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB]
Get: 11 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB]
Get: 12 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB]
Get: 13 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB]
Get: 14 http://deb.debian.org/debian bullseye/main i386 libcbor0 i386 0.5.0+dfsg-2 [26.2 kB]
Get: 15 http://deb.debian.org/debian bullseye/main i386 libfido2-1 i386 1.6.0-2 [59.9 kB]
Get: 16 http://deb.debian.org/debian bullseye/main i386 openssh-client i386 1:8.4p1-5 [991 kB]
Get: 17 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB]
Get: 18 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB]
Get: 19 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB]
Get: 20 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 21 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB]
Get: 22 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB]
Get: 23 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB]
Get: 24 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB]
Get: 25 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 26 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 27 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 28 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get: 29 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get: 30 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB]
Get: 31 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB]
Get: 32 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB]
Get: 33 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB]
Get: 34 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB]
Get: 35 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 36 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 37 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB]
Get: 38 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB]
Get: 39 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB]
Get: 40 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB]
Get: 41 http://deb.debian.org/debian bullseye/main i386 libnl-3-200 i386 3.4.0-1+b1 [66.4 kB]
Get: 42 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-200 i386 3.4.0-1+b1 [168 kB]
Get: 43 http://deb.debian.org/debian bullseye/main i386 libibverbs1 i386 33.2-1 [64.6 kB]
Get: 44 http://deb.debian.org/debian bullseye/main i386 ibverbs-providers i386 33.2-1 [275 kB]
Get: 45 http://deb.debian.org/debian bullseye/main i386 libevent-2.1-7 i386 2.1.12-stable-1 [203 kB]
Get: 46 http://deb.debian.org/debian bullseye/main i386 libevent-core-2.1-7 i386 2.1.12-stable-1 [148 kB]
Get: 47 http://deb.debian.org/debian bullseye/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-1 [116 kB]
Get: 48 http://deb.debian.org/debian bullseye/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-1 [57.3 kB]
Get: 49 http://deb.debian.org/debian bullseye/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-1 [64.9 kB]
Get: 50 http://deb.debian.org/debian bullseye/main i386 libevent-dev i386 2.1.12-stable-1 [332 kB]
Get: 51 http://deb.debian.org/debian bullseye/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.1 [178 kB]
Get: 52 http://deb.debian.org/debian bullseye/main i386 librdmacm1 i386 33.2-1 [75.2 kB]
Get: 53 http://deb.debian.org/debian bullseye/main i386 libfabric1 i386 1.11.0-2 [518 kB]
Get: 54 http://deb.debian.org/debian bullseye/main i386 libgslcblas0 i386 2.6+dfsg-2 [99.2 kB]
Get: 55 http://deb.debian.org/debian bullseye/main i386 libgsl25 i386 2.6+dfsg-2 [911 kB]
Get: 56 http://deb.debian.org/debian bullseye/main i386 libgsl-dev i386 2.6+dfsg-2 [1146 kB]
Get: 57 http://deb.debian.org/debian bullseye/main i386 libhwloc15 i386 2.4.1+dfsg-1 [164 kB]
Get: 58 http://deb.debian.org/debian bullseye/main i386 libnuma1 i386 2.0.12-1+b1 [27.9 kB]
Get: 59 http://deb.debian.org/debian bullseye/main i386 libnuma-dev i386 2.0.12-1+b1 [41.2 kB]
Get: 60 http://deb.debian.org/debian bullseye/main i386 libltdl7 i386 2.4.6-15 [392 kB]
Get: 61 http://deb.debian.org/debian bullseye/main i386 libltdl-dev i386 2.4.6-15 [164 kB]
Get: 62 http://deb.debian.org/debian bullseye/main i386 libhwloc-dev i386 2.4.1+dfsg-1 [250 kB]
Get: 63 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB]
Get: 64 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 65 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 66 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB]
Get: 67 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.1-1 [310 kB]
Get: 68 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.1-1 [796 kB]
Get: 69 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB]
Get: 70 http://deb.debian.org/debian bullseye/main i386 libxnvctrl0 i386 460.73.01-1 [26.8 kB]
Get: 71 http://deb.debian.org/debian bullseye/main i386 ocl-icd-libopencl1 i386 2.2.14-2 [45.0 kB]
Get: 72 http://deb.debian.org/debian bullseye/main i386 libhwloc-plugins i386 2.4.1+dfsg-1 [22.0 kB]
Get: 73 http://deb.debian.org/debian bullseye/main i386 libnl-3-dev i386 3.4.0-1+b1 [107 kB]
Get: 74 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-dev i386 3.4.0-1+b1 [192 kB]
Get: 75 http://deb.debian.org/debian bullseye/main i386 libibverbs-dev i386 33.2-1 [521 kB]
Get: 76 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get: 77 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB]
Get: 78 http://deb.debian.org/debian bullseye/main i386 libpmix2 i386 4.0.0-4 [582 kB]
Get: 79 http://deb.debian.org/debian bullseye/main i386 libopenmpi3 i386 4.1.0-10 [2144 kB]
Get: 80 http://deb.debian.org/debian bullseye/main i386 openmpi-common all 4.1.0-10 [179 kB]
Get: 81 http://deb.debian.org/debian bullseye/main i386 libpmix-dev i386 4.0.0-4 [717 kB]
Get: 82 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB]
Get: 83 http://deb.debian.org/debian bullseye/main i386 openmpi-bin i386 4.1.0-10 [209 kB]
Get: 84 http://deb.debian.org/debian bullseye/main i386 libopenmpi-dev i386 4.1.0-10 [1142 kB]
Fetched 44.4 MB in 21s (2156 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
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I: Building the package
I: Running cd /build/ampliconnoise-1.29/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package ampliconnoise
dpkg-buildpackage: info: source version 1.29-9
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Pranav Ballaney <ballaneypranav@gmail.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
dh_auto_clean
make -j10 clean
make[1]: Entering directory '/build/ampliconnoise-1.29'
(cd FCluster && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/FCluster'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *o FCluster
make[2]: Leaving directory '/build/ampliconnoise-1.29/FCluster'
(cd FastaUnique && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/FastaUnique'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o FastaUnique
make[2]: Leaving directory '/build/ampliconnoise-1.29/FastaUnique'
(cd NDist && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/NDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o NDist
make[2]: Leaving directory '/build/ampliconnoise-1.29/NDist'
(cd PyroDist && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/PyroDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroDist
make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroDist'
(cd PyroNoise && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoise
make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoise'
(cd PyroNoiseM && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoiseM'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoiseM
make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoiseM'
(cd PyroNoiseA && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoiseA'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoiseA
make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoiseA'
(cd SeqDist && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/SeqDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SeqDist
make[2]: Leaving directory '/build/ampliconnoise-1.29/SeqDist'
(cd SeqNoise && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/SeqNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SeqNoise
make[2]: Leaving directory '/build/ampliconnoise-1.29/SeqNoise'
(cd SplitClusterEven && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/SplitClusterEven'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SplitClusterEven
make[2]: Leaving directory '/build/ampliconnoise-1.29/SplitClusterEven'
(cd SplitClusterClust && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/SplitClusterClust'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SplitClusterClust
make[2]: Leaving directory '/build/ampliconnoise-1.29/SplitClusterClust'
(cd Perseus && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/Perseus'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o Perseus
make[2]: Leaving directory '/build/ampliconnoise-1.29/Perseus'
(cd PerseusD && make clean)
make[2]: Entering directory '/build/ampliconnoise-1.29/PerseusD'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PerseusD
make[2]: Leaving directory '/build/ampliconnoise-1.29/PerseusD'
(cd bin && rm -rf *)
make[1]: Leaving directory '/build/ampliconnoise-1.29'
debian/rules override_dh_clean
make[1]: Entering directory '/build/ampliconnoise-1.29'
dh_clean
rm -f *.o
rm -f *.1
make[1]: Leaving directory '/build/ampliconnoise-1.29'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j10 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/ampliconnoise-1.29'
(cd FCluster && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/FCluster'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FCluster.c
FCluster.c:223:1: warning: return type defaults to 'int' [-Wimplicit-int]
223 | UpdateMinCacheForMarkedRows(struct t_Min* asMin,float** aafDistMatrix,int nN)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
FCluster.c: In function 'UpdateMinCacheForMarkedRows':
FCluster.c:230:13: warning: implicit declaration of function 'UpdateMinCacheForRow'; did you mean 'UpdateMinCacheForMarkedRows'? [-Wimplicit-function-declaration]
230 | UpdateMinCacheForRow(asMin,i,aafDistMatrix);
| ^~~~~~~~~~~~~~~~~~~~
| UpdateMinCacheForMarkedRows
FCluster.c: At top level:
FCluster.c:237:1: warning: return type defaults to 'int' [-Wimplicit-int]
237 | UpdateMinCacheForRow(struct t_Min* asMin,int i,float** aafDistMatrix)
| ^~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o FCluster FCluster.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/FCluster'
(cd FastaUnique && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/FastaUnique'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FastaUnique.c
linking...
cc -Wl,-z,relro -Wl,-z,now -o FastaUnique FastaUnique.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/FastaUnique'
(cd NDist && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/NDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c NDist.c
NDist.c: In function 'readData':
NDist.c:707:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
707 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o NDist NDist.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/NDist'
(cd PyroDist && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/PyroDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroDist.c
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroDist PyroDist.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroDist'
(cd PyroNoise && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoise.c
PyroNoise.c: In function 'writeCentroids':
PyroNoise.c:2073:21: warning: too many arguments for format [-Wformat-extra-args]
2073 | fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoise PyroNoise.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoise'
(cd SeqDist && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/SeqDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqDist.c
SeqDist.c: In function 'readData':
SeqDist.c:854:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
854 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o SeqDist SeqDist.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/SeqDist'
(cd PyroNoiseM && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoiseM'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoiseM.c
PyroNoiseM.c: In function 'writeCentroids':
PyroNoiseM.c:2139:21: warning: too many arguments for format [-Wformat-extra-args]
2139 | fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoiseM PyroNoiseM.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoiseM'
(cd PyroNoiseA && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoiseA'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -O3 -c PyroNoiseA.c
linking...
mpicc -o PyroNoiseA PyroNoiseA.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoiseA'
(cd SeqNoise && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/SeqNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqNoise.c
SeqNoise.c: In function 'main':
SeqNoise.c:120:25: warning: too many arguments for format [-Wformat-extra-args]
120 | if(bVerbose){printf("%d: Broadcast distance matrix\n", rank, nSize, nPacket); fflush(stdout);}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SeqNoise.c: In function 'readData':
SeqNoise.c:652:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
652 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o SeqNoise SeqNoise.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/SeqNoise'
(cd SplitClusterEven && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/SplitClusterEven'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterEven.c
SplitClusterEven.c: In function 'readMapFile':
SplitClusterEven.c:681:19: warning: too many arguments for format [-Wformat-extra-args]
681 | fprintf(stderr, "Failed to open map file\n", szMapFile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'main':
SplitClusterEven.c:89:28: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
89 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:89:5: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024
89 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:90:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
90 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:90:5: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024
90 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:91:28: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
91 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:91:5: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024
91 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:142:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
142 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:142:7: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024
142 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:143:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
143 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:143:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024
143 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:144:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
144 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:144:7: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024
144 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o SplitClusterEven SplitClusterEven.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/SplitClusterEven'
(cd SplitClusterClust && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/SplitClusterClust'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
gcc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterClust.c
SplitClusterClust.c: In function 'readMapFile':
SplitClusterClust.c:316:19: warning: too many arguments for format [-Wformat-extra-args]
316 | fprintf(stderr, "Failed to open map file\n", szMapFile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterClust.c: In function 'main':
SplitClusterClust.c:52:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
52 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~ ~~~~~
SplitClusterClust.c:52:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024
52 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterClust.c:88:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
88 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~ ~~~~~
SplitClusterClust.c:88:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024
88 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
gcc -Wl,-z,relro -Wl,-z,now -o SplitClusterClust SplitClusterClust.o -lm
make[2]: Leaving directory '/build/ampliconnoise-1.29/SplitClusterClust'
(cd Perseus && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/Perseus'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c Perseus.c
Perseus.c: In function 'readData':
Perseus.c:856:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
856 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
Perseus.c: In function 'calcLoonIndex':
Perseus.c:1637:34: warning: '%s' directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=]
1637 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
| ^~ ~~~~~~~~~~~
Perseus.c:1637:3: note: 'sprintf' output between 28 and 131098 bytes into a destination of size 65536
1637 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o Perseus Perseus.o -lm -lgsl -lgslcblas
make[2]: Leaving directory '/build/ampliconnoise-1.29/Perseus'
(cd PerseusD && CFLAGS="-g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/ampliconnoise-1.29/PerseusD'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PerseusD.c
PerseusD.c: In function 'readData':
PerseusD.c:908:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
908 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
PerseusD.c: In function 'calcLoonIndex':
PerseusD.c:1648:34: warning: '%s' directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=]
1648 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
| ^~ ~~~~~~~~~~~
PerseusD.c:1648:3: note: 'sprintf' output between 28 and 131098 bytes into a destination of size 65536
1648 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o PerseusD PerseusD.o -lm -lgsl -lgslcblas
make[2]: Leaving directory '/build/ampliconnoise-1.29/PerseusD'
make[1]: Leaving directory '/build/ampliconnoise-1.29'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/ampliconnoise-1.29'
make install
make[2]: Entering directory '/build/ampliconnoise-1.29'
cp FCluster/FCluster bin
cp FastaUnique/FastaUnique bin
cp NDist/NDist bin
cp PyroDist/PyroDist bin
cp PyroNoise/PyroNoise bin
cp PyroNoiseM/PyroNoiseM bin
cp PyroNoiseA/PyroNoiseA bin
cp SeqDist/SeqDist bin
cp SeqNoise/SeqNoise bin
cp SplitClusterEven/SplitClusterEven bin
cp SplitClusterClust/SplitClusterClust bin
cp Perseus/Perseus bin
cp PerseusD/PerseusD bin
make[2]: Leaving directory '/build/ampliconnoise-1.29'
dh_install bin/* /usr/bin
dh_install Data/* /usr/share/ampliconnoise/Data/
dh_install Scripts/* /usr/share/ampliconnoise/Scripts/
make[1]: Leaving directory '/build/ampliconnoise-1.29'
dh_installdocs
dh_installchangelogs
dh_installexamples
debian/rules override_dh_installman
make[1]: Entering directory '/build/ampliconnoise-1.29'
debian/ampliconnoise.pod
pod2man -c AmpliconNoise Documentation debian/ampliconnoise.pod > ampliconnoise.1
dh_installman ampliconnoise.1
( for f in bin/* ; do \
ln -s ampliconnoise.1 debian/ampliconnoise/usr/share/man/man1/`basename "$f"`.1 ; \
done )
make[1]: Leaving directory '/build/ampliconnoise-1.29'
dh_perl
dh_link
dh_strip_nondeterminism
debian/rules override_dh_compress
make[1]: Entering directory '/build/ampliconnoise-1.29'
# Use xz compression for data file to shrink size even more
find debian -name C005.dat -exec xz \{\} \;
dh_compress --exclude=.pdf
make[1]: Leaving directory '/build/ampliconnoise-1.29'
dh_fixperms
dh_missing
dh_dwz -a
dwz: debian/ampliconnoise/usr/bin/PyroNoiseA: .debug_info section not present
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: package ampliconnoise: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package ampliconnoise: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'ampliconnoise' in '../ampliconnoise_1.29-9_i386.deb'.
dpkg-deb: building package 'ampliconnoise-dbgsym' in '../ampliconnoise-dbgsym_1.29-9_i386.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../ampliconnoise_1.29-9_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1611 and its subdirectories
I: Current time: Sat Jun 26 11:26:30 -12 2021
I: pbuilder-time-stamp: 1624749990