I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 23 20:48:25 -12 2022 I: pbuilder-time-stamp: 1656060505 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.t0Et78wu/trustedkeys.kbx': General error gpgv: Signature made Fri Feb 12 03:42:28 2021 -12 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.0~git20210119.80e82ac dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10341/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='8dfedb857ae54f728c446abd8ce2eb00' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10341' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.oDXJfvSbBs/pbuilderrc_AIwo --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.oDXJfvSbBs/b1 --logfile b1/build.log fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 23 03:46 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/10341/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~), mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libcamd2{a} libcbor0{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real2019.2{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphblas3{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-cpp-103-1{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102{a} libhdf5-openmpi-hl-100{a} libhdf5-openmpi-hl-cpp-100{a} libhdf5-openmpi-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjsoncpp24{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmetis5{a} libmongoose2{a} libmpdec3{a} libmumps-5.3{a} libmumps-dev{a} libmumps-headers-dev{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.14{a} libpetsc-real3.14-dev{a} libpetsc3.14-dev-common{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libprocps8{a} libpsl5{a} libpsm-infinipath1{a} libptscotch-6.1{a} libptscotch-dev{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.1{a} libscotch-6.1{a} libscotch-dev{a} libsigsegv2{a} libslepc-real3.14{a} libslepc-real3.14-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist6{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-ffcx{a} python3-fiat{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-sympy{a} python3-ufl{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common ksh libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgl1-mesa-dev libglib2.0-data libgpm2 libldap-common libmail-sendmail-perl libpetsc3.14-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-pil shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 249 newly installed, 0 to remove and 0 not upgraded. Need to get 170 MB of archives. After unpacking 995 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libcbor0 i386 0.5.0+dfsg-2 [26.2 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libfido2-1 i386 1.6.0-2 [59.9 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 openssh-client i386 1:8.4p1-5 [991 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.6 [727 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-2 [244 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.2 [372 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-1 [139 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 gfortran i386 4:10.2.1-1 [1436 B] Get: 73 http://deb.debian.org/debian bullseye/main i386 libnl-3-200 i386 3.4.0-1+b1 [66.4 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-200 i386 3.4.0-1+b1 [168 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libibverbs1 i386 33.1+git20210317-1 [64.4 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 ibverbs-providers i386 33.1+git20210317-1 [275 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-6 [209 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B] Get: 80 http://deb.debian.org/debian bullseye/main i386 libaec-dev i386 1.0.4-1 [21.5 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libsuitesparseconfig5 i386 1:5.8.1+dfsg-2 [23.1 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libamd2 i386 1:5.8.1+dfsg-2 [30.7 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libarpack2 i386 3.8.0-1 [103 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libblas-dev i386 3.9.0-3 [157 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 liblapack-dev i386 3.9.0-3 [3759 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libarpack2-dev i386 3.8.0-1 [123 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libbasix0 i386 0.0.1~git20210122.4f10ef2-2 [157 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libeigen3-dev all 3.3.9-2 [858 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libbasix-dev i386 0.0.1~git20210122.4f10ef2-2 [4220 B] Get: 94 http://deb.debian.org/debian bullseye/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libboost-atomic1.74.0 i386 1.74.0-9 [244 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libboost-atomic1.74-dev i386 1.74.0-9 [245 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libboost-chrono1.74.0 i386 1.74.0-9 [254 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libboost-chrono1.74-dev i386 1.74.0-9 [262 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libboost-chrono-dev i386 1.74.0.3 [4956 B] Get: 100 http://deb.debian.org/debian bullseye/main i386 libboost-date-time1.74.0 i386 1.74.0-9 [241 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libboost-serialization1.74.0 i386 1.74.0-9 [346 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libboost-serialization1.74-dev i386 1.74.0-9 [390 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libboost-date-time1.74-dev i386 1.74.0-9 [250 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 105 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem1.74.0 i386 1.74.0-9 [288 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74.0 i386 1.74.0-9 [241 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74-dev i386 1.74.0-9 [243 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem1.74-dev i386 1.74.0-9 [311 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem-dev i386 1.74.0.3 [4368 B] Get: 110 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74.0 i386 1.74.0-9 [542 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-6 [9799 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74-dev i386 1.74.0-9 [618 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams1.74-dev i386 1.74.0-9 [275 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get: 115 http://deb.debian.org/debian bullseye/main i386 libboost-math1.74.0 i386 1.74.0-9 [464 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libboost-math1.74-dev i386 1.74.0-9 [568 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libboost-math-dev i386 1.74.0.3 [4536 B] Get: 118 http://deb.debian.org/debian bullseye/main i386 libevent-core-2.1-7 i386 2.1.12-stable-1 [148 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-1 [57.3 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.1 [178 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 librdmacm1 i386 33.1+git20210317-1 [74.9 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libfabric1 i386 1.11.0-2 [518 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 libhwloc15 i386 2.4.1+dfsg-1 [164 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.0-2 [310 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.0-2 [796 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libxnvctrl0 i386 460.56-1 [26.8 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 ocl-icd-libopencl1 i386 2.2.14-2 [45.0 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 libhwloc-plugins i386 2.4.1+dfsg-1 [22.0 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 libpmix2 i386 4.0.0-4 [582 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 libopenmpi3 i386 4.1.0-8 [2143 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 libboost-mpi1.74.0 i386 1.74.0-9 [283 kB] Get: 137 http://deb.debian.org/debian bullseye/main i386 openmpi-common all 4.1.0-8 [179 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 libnl-3-dev i386 3.4.0-1+b1 [107 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-dev i386 3.4.0-1+b1 [192 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 libibverbs-dev i386 33.1+git20210317-1 [521 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 libnuma1 i386 2.0.12-1+b1 [27.9 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 libnuma-dev i386 2.0.12-1+b1 [41.2 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 libltdl7 i386 2.4.6-15 [392 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 libltdl-dev i386 2.4.6-15 [164 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 libhwloc-dev i386 2.4.1+dfsg-1 [250 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 libevent-2.1-7 i386 2.1.12-stable-1 [203 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-1 [116 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-1 [64.9 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 libevent-dev i386 2.1.12-stable-1 [332 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 libpmix-dev i386 4.0.0-4 [717 kB] Get: 151 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 openmpi-bin i386 4.1.0-8 [209 kB] Get: 155 http://deb.debian.org/debian bullseye/main i386 libopenmpi-dev i386 4.1.0-8 [1142 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 mpi-default-dev i386 1.13 [5476 B] Get: 157 http://deb.debian.org/debian bullseye/main i386 libboost-mpi1.74-dev i386 1.74.0-9 [306 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 libboost-mpi-dev i386 1.74.0.3 [4420 B] Get: 159 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74.0 i386 1.74.0-9 [365 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74-dev i386 1.74.0-9 [397 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 libboost-program-options-dev i386 1.74.0.3 [4344 B] Get: 162 http://deb.debian.org/debian bullseye/main i386 libboost-serialization-dev i386 1.74.0.3 [4560 B] Get: 163 http://deb.debian.org/debian bullseye/main i386 libboost-thread1.74.0 i386 1.74.0-9 [282 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 libboost-thread1.74-dev i386 1.74.0-9 [294 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 libboost-thread-dev i386 1.74.0.3 [4356 B] Get: 166 http://deb.debian.org/debian bullseye/main i386 libboost-timer1.74.0 i386 1.74.0-9 [252 kB] Get: 167 http://deb.debian.org/debian bullseye/main i386 libboost-timer1.74-dev i386 1.74.0-9 [256 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 libboost-timer-dev i386 1.74.0.3 [4456 B] Get: 169 http://deb.debian.org/debian bullseye/main i386 libbtf1 i386 1:5.8.1+dfsg-2 [23.6 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 libcamd2 i386 1:5.8.1+dfsg-2 [31.2 kB] Get: 171 http://deb.debian.org/debian bullseye/main i386 libccolamd2 i386 1:5.8.1+dfsg-2 [32.1 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 libcolamd2 i386 1:5.8.1+dfsg-2 [27.9 kB] Get: 173 http://deb.debian.org/debian bullseye/main i386 libmetis5 i386 5.1.0.dfsg-7 [171 kB] Get: 174 http://deb.debian.org/debian bullseye/main i386 libcholmod3 i386 1:5.8.1+dfsg-2 [242 kB] Get: 175 http://deb.debian.org/debian bullseye/main i386 libcombblas1.16.0 i386 1.6.2-6 [282 kB] Get: 176 http://deb.debian.org/debian bullseye/main i386 libcxsparse3 i386 1:5.8.1+dfsg-2 [64.3 kB] Get: 177 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-103-1 i386 1.10.6+repack-2 [1193 kB] Get: 178 http://deb.debian.org/debian bullseye/main i386 libfftw3-double3 i386 3.3.8-2 [640 kB] Get: 179 http://deb.debian.org/debian bullseye/main i386 libfftw3-long3 i386 3.3.8-2 [326 kB] Get: 180 http://deb.debian.org/debian bullseye/main i386 libfftw3-single3 i386 3.3.8-2 [652 kB] Get: 181 http://deb.debian.org/debian bullseye/main i386 libfftw3-mpi3 i386 3.3.8-2 [70.2 kB] Get: 182 http://deb.debian.org/debian bullseye/main i386 libsuperlu-dist6 i386 6.2.0+dfsg1-3 [407 kB] Get: 183 http://deb.debian.org/debian bullseye/main i386 libhypre i386 2.18.2-1 [1278 kB] Get: 184 http://deb.debian.org/debian bullseye/main i386 libklu1 i386 1:5.8.1+dfsg-2 [57.5 kB] Get: 185 http://deb.debian.org/debian bullseye/main i386 mpi-default-bin i386 1.13 [4672 B] Get: 186 http://deb.debian.org/debian bullseye/main i386 libscalapack-openmpi2.1 i386 2.1.0-4 [1391 kB] Get: 187 http://deb.debian.org/debian bullseye/main i386 libmumps-5.3 i386 5.3.5-2 [1639 kB] Get: 188 http://deb.debian.org/debian bullseye/main i386 libptscotch-6.1 i386 6.1.0-2 [787 kB] Get: 189 http://deb.debian.org/debian bullseye/main i386 libsuperlu5 i386 5.2.2+dfsg1-2 [161 kB] Get: 190 http://deb.debian.org/debian bullseye/main i386 libumfpack5 i386 1:5.8.1+dfsg-2 [156 kB] Get: 191 http://deb.debian.org/debian bullseye/main i386 libpetsc-real3.14 i386 3.14.5+dfsg1-4 [4769 kB] Get: 192 http://deb.debian.org/debian bullseye/main i386 libparpack2 i386 3.8.0-1 [97.3 kB] Get: 193 http://deb.debian.org/debian bullseye/main i386 libslepc-real3.14 i386 3.14.2+dfsg1-1 [876 kB] Get: 194 http://deb.debian.org/debian bullseye/main i386 libdolfinx-real2019.2 i386 2019.2.0~git20210130.c14cb0a-4 [686 kB] Get: 195 http://deb.debian.org/debian bullseye/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 196 http://deb.debian.org/debian bullseye/main i386 libpetsc3.14-dev-common all 3.14.5+dfsg1-4 [206 kB] Get: 197 http://deb.debian.org/debian bullseye/main i386 libgraphblas3 i386 1:5.8.1+dfsg-2 [6146 kB] Get: 198 http://deb.debian.org/debian bullseye/main i386 libldl2 i386 1:5.8.1+dfsg-2 [23.4 kB] Get: 199 http://deb.debian.org/debian bullseye/main i386 libmongoose2 i386 1:5.8.1+dfsg-2 [49.4 kB] Get: 200 http://deb.debian.org/debian bullseye/main i386 librbio2 i386 1:5.8.1+dfsg-2 [34.4 kB] Get: 201 http://deb.debian.org/debian bullseye/main i386 libspqr2 i386 1:5.8.1+dfsg-2 [83.5 kB] Get: 202 http://deb.debian.org/debian bullseye/main i386 libsliplu1 i386 1:5.8.1+dfsg-2 [56.5 kB] Get: 203 http://deb.debian.org/debian bullseye/main i386 libsuitesparse-dev i386 1:5.8.1+dfsg-2 [6444 kB] Get: 204 http://deb.debian.org/debian bullseye/main i386 libsuperlu-dev i386 5.2.2+dfsg1-2 [21.4 kB] Get: 205 http://deb.debian.org/debian bullseye/main i386 libhypre-dev i386 2.18.2-1 [154 kB] Get: 206 http://deb.debian.org/debian bullseye/main i386 libscotch-6.1 i386 6.1.0-2 [496 kB] Get: 207 http://deb.debian.org/debian bullseye/main i386 libscotch-dev i386 6.1.0-2 [1506 kB] Get: 208 http://deb.debian.org/debian bullseye/main i386 libptscotch-dev i386 6.1.0-2 [1420 kB] Get: 209 http://deb.debian.org/debian bullseye/main i386 libscalapack-openmpi-dev i386 2.1.0-4 [13.7 kB] Get: 210 http://deb.debian.org/debian bullseye/main i386 libscalapack-mpi-dev i386 2.1.0-4 [9732 B] Get: 211 http://deb.debian.org/debian bullseye/main i386 libmumps-headers-dev all 5.3.5-2 [34.1 kB] Get: 212 http://deb.debian.org/debian bullseye/main i386 libmumps-dev i386 5.3.5-2 [1563 kB] Get: 213 http://deb.debian.org/debian bullseye/main i386 libfftw3-quad3 i386 3.3.8-2 [1762 kB] Get: 214 http://deb.debian.org/debian bullseye/main i386 libfftw3-bin i386 3.3.8-2 [53.5 kB] Get: 215 http://deb.debian.org/debian bullseye/main i386 libfftw3-dev i386 3.3.8-2 [3170 kB] Get: 216 http://deb.debian.org/debian bullseye/main i386 libfftw3-mpi-dev i386 3.3.8-2 [70.9 kB] Get: 217 http://deb.debian.org/debian bullseye/main i386 libssl-dev i386 1.1.1k-1 [1841 kB] Get: 218 http://deb.debian.org/debian bullseye/main i386 opencl-c-headers all 3.0~2020.12.18-1 [41.8 kB] Get: 219 http://deb.debian.org/debian bullseye/main i386 opencl-clhpp-headers all 3.0~2.0.13-1 [41.5 kB] Get: 220 http://deb.debian.org/debian bullseye/main i386 ocl-icd-opencl-dev i386 2.2.14-2 [11.2 kB] Get: 221 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-fortran-102 i386 1.10.6+repack-2 [113 kB] Get: 222 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-hl-100 i386 1.10.6+repack-2 [93.2 kB] Get: 223 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-hl-fortran-100 i386 1.10.6+repack-2 [57.3 kB] Get: 224 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-cpp-103-1 i386 1.10.6+repack-2 [152 kB] Get: 225 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-hl-cpp-100 i386 1.10.6+repack-2 [37.8 kB] Get: 226 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 227 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB] Get: 228 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB] Get: 229 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-dev i386 1.10.6+repack-2 [2671 kB] Get: 230 http://deb.debian.org/debian bullseye/main i386 libhdf5-mpi-dev i386 1.10.6+repack-2 [32.1 kB] Get: 231 http://deb.debian.org/debian bullseye/main i386 libsuperlu-dist-dev i386 6.2.0+dfsg1-3 [248 kB] Get: 232 http://deb.debian.org/debian bullseye/main i386 libpetsc-real3.14-dev i386 3.14.5+dfsg1-4 [6069 kB] Get: 233 http://deb.debian.org/debian bullseye/main i386 libparpack2-dev i386 3.8.0-1 [112 kB] Get: 234 http://deb.debian.org/debian bullseye/main i386 libslepc-real3.14-dev i386 3.14.2+dfsg1-1 [4359 kB] Get: 235 http://deb.debian.org/debian bullseye/main i386 libdolfinx-real-dev i386 2019.2.0~git20210130.c14cb0a-4 [49.4 kB] Get: 236 http://deb.debian.org/debian bullseye/main i386 libxml2-dev i386 2.9.10+dfsg-6.6 [849 kB] Get: 237 http://deb.debian.org/debian bullseye/main i386 python3-cffi-backend i386 1.14.5-1 [89.1 kB] Get: 238 http://deb.debian.org/debian bullseye/main i386 python3-ply all 3.11-4 [65.5 kB] Get: 239 http://deb.debian.org/debian bullseye/main i386 python3-pycparser all 2.20-3 [74.5 kB] Get: 240 http://deb.debian.org/debian bullseye/main i386 python3-cffi all 1.14.5-1 [87.9 kB] Get: 241 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-3 [189 kB] Get: 242 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 243 http://deb.debian.org/debian bullseye/main i386 python3-mpmath all 1.2.1-1 [418 kB] Get: 244 http://deb.debian.org/debian bullseye/main i386 python3-sympy all 1.7.1-3 [4031 kB] Get: 245 http://deb.debian.org/debian bullseye/main i386 python3-fiat all 2019.2.0~git20210116.0439689-2 [70.6 kB] Get: 246 http://deb.debian.org/debian bullseye/main i386 python3-ufl all 2019.2.0~git20210211.d60cd09-1 [156 kB] Get: 247 http://deb.debian.org/debian bullseye/main i386 python3-basix i386 0.0.1~git20210122.4f10ef2-2 [94.3 kB] Get: 248 http://deb.debian.org/debian bullseye/main i386 python3-ffcx all 2019.2.0~git20210122.22ca4c0-2 [106 kB] Get: 249 http://deb.debian.org/debian bullseye/main i386 libdolfinx-dev all 2019.2.0~git20210130.c14cb0a-4 [149 kB] Fetched 170 MB in 3s (53.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libboost-filesystem1.74-dev:i386 (1.74.0-9) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libboost-date-time1.74.0:i386 (1.74.0-9) ... Setting up libscotch-6.1:i386 (6.1.0-2) ... Setting up libfido2-1:i386 (1.6.0-2) ... Setting up libbsd0:i386 (0.11.3-1) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libboost-timer1.74.0:i386 (1.74.0-9) ... Setting up libicu-dev:i386 (67.1-6) ... Setting up libxml2:i386 (2.9.10+dfsg-6.6) ... Setting up libsuitesparseconfig5:i386 (1:5.8.1+dfsg-2) ... Setting up libboost-filesystem-dev:i386 (1.74.0.3) ... Setting up libprocps8:i386 (2:3.3.17-5) ... Setting up libblas-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.0.4-1) ... Setting up librbio2:i386 (1:5.8.1+dfsg-2) ... Setting up libboost-thread1.74.0:i386 (1.74.0-9) ... Setting up libevent-pthreads-2.1-7:i386 (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:i386 (2.1.12-stable-1) ... Setting up liblapack3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libcolamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:i386 (3.4.3-2+b1) ... Setting up libboost-chrono-dev:i386 (1.74.0.3) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libboost-math-dev:i386 (1.74.0.3) ... Setting up libedit2:i386 (3.1-20191231-2+b1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libaec-dev:i386 (1.0.4-1) ... Setting up libarpack2:i386 (3.8.0-1) ... Setting up libjpeg-dev:i386 (1:2.0.6-4) ... Setting up libsuperlu5:i386 (5.2.2+dfsg1-2) ... Setting up libevent-openssl-2.1-7:i386 (2.1.12-stable-1) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-2) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnuma-dev:i386 (2.0.12-1+b1) ... Setting up libnl-route-3-200:i386 (3.4.0-1+b1) ... Setting up libsliplu1:i386 (1:5.8.1+dfsg-2) ... Setting up libcamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libmongoose2:i386 (1:5.8.1+dfsg-2) ... Setting up libxml2-dev:i386 (2.9.10+dfsg-6.6) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up liblapack-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libeigen3-dev (3.3.9-2) ... Setting up gfortran-10 (10.2.1-6) ... Setting up libboost-timer1.74-dev:i386 (1.74.0-9) ... Setting up ocl-icd-opencl-dev:i386 (2.2.14-2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:i386 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:i386 (1.74.0-9) ... Setting up libnl-3-dev:i386 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-6) ... Setting up libklu1:i386 (1:5.8.1+dfsg-2) ... Setting up libccolamd2:i386 (1:5.8.1+dfsg-2) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:i386 (7.74.0-1.2) ... Setting up libx11-6:i386 (2:1.7.0-2) ... Setting up libsuperlu-dev:i386 (5.2.2+dfsg1-2) ... Setting up libbasix-dev:i386 (0.0.1~git20210122.4f10ef2-2) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up libcholmod3:i386 (1:5.8.1+dfsg-2) ... Setting up libboost-timer-dev:i386 (1.74.0.3) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspqr2:i386 (1:5.8.1+dfsg-2) ... Setting up libibverbs1:i386 (33.1+git20210317-1) ... Setting up libarpack2-dev:i386 (3.8.0-1) ... Setting up ibverbs-providers:i386 (33.1+git20210317-1) ... Setting up openssh-client (1:8.4p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:i386 (460.56-1) ... Setting up libboost-iostreams1.74-dev:i386 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:i386 (3.4.0-1+b1) ... Setting up libboost-date-time1.74-dev:i386 (1.74.0-9) ... Setting up libltdl-dev:i386 (2.4.6-15) ... Setting up libumfpack5:i386 (1:5.8.1+dfsg-2) ... Setting up libboost-serialization-dev:i386 (1.74.0.3) ... Setting up cmake (3.18.4-2) ... Setting up libboost-thread1.74-dev:i386 (1.74.0-9) ... Setting up libhwloc-dev:i386 (2.4.1+dfsg-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libboost-thread-dev:i386 (1.74.0.3) ... Setting up librdmacm1:i386 (33.1+git20210317-1) ... Setting up libsuitesparse-dev:i386 (1:5.8.1+dfsg-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libboost-iostreams-dev:i386 (1.74.0.3) ... Setting up libibverbs-dev:i386 (33.1+git20210317-1) ... Setting up libhwloc-plugins:i386 (2.4.1+dfsg-1) ... Setting up libpetsc3.14-dev-common (3.14.5+dfsg1-4) ... Setting up python3-mpmath (1.2.1-1) ... Setting up python3-cffi-backend:i386 (1.14.5-1) ... Setting up python3-basix (0.0.1~git20210122.4f10ef2-2) ... Setting up python3-pkg-resources (52.0.0-3) ... Setting up libfabric1 (1.11.0-2) ... Setting up python3-sympy (1.7.1-3) ... Setting up libpmix2:i386 (4.0.0-4) ... Setting up libopenmpi3:i386 (4.1.0-8) ... Setting up python3-ply (3.11-4) ... Setting up libboost-mpi1.74.0 (1.74.0-9) ... Setting up libptscotch-6.1:i386 (6.1.0-2) ... Setting up libfftw3-mpi3:i386 (3.3.8-2) ... Setting up python3-pycparser (2.20-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up libpmix-dev:i386 (4.0.0-4) ... Setting up openmpi-bin (4.1.0-8) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-103-1:i386 (1.10.6+repack-2) ... Setting up python3-fiat (2019.2.0~git20210116.0439689-2) ... Setting up libparpack2:i386 (3.8.0-1) ... Setting up libcombblas1.16.0:i386 (1.6.2-6) ... Setting up python3-ufl (2019.2.0~git20210211.d60cd09-1) ... Setting up python3-cffi (1.14.5-1) ... Setting up libfftw3-mpi-dev:i386 (3.3.8-2) ... Setting up mpi-default-bin (1.13) ... Setting up python3-ffcx (2019.2.0~git20210122.22ca4c0-2) ... Setting up libhdf5-openmpi-fortran-102:i386 (1.10.6+repack-2) ... Setting up libhdf5-openmpi-hl-100:i386 (1.10.6+repack-2) ... Setting up libsuperlu-dist6:i386 (6.2.0+dfsg1-3) ... Setting up libopenmpi-dev:i386 (4.1.0-8) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up libhdf5-openmpi-cpp-103-1:i386 (1.10.6+repack-2) ... Setting up libhdf5-openmpi-hl-cpp-100:i386 (1.10.6+repack-2) ... Setting up libhdf5-openmpi-hl-fortran-100:i386 (1.10.6+repack-2) ... Setting up libscalapack-openmpi2.1:i386 (2.1.0-4) ... Setting up libhypre:i386 (2.18.2-1) ... Setting up libsuperlu-dist-dev:i386 (6.2.0+dfsg1-3) ... Setting up libscalapack-openmpi-dev:i386 (2.1.0-4) ... Setting up libmumps-5.3:i386 (5.3.5-2) ... Setting up mpi-default-dev (1.13) ... Setting up libscalapack-mpi-dev:i386 (2.1.0-4) ... Setting up libhdf5-openmpi-dev (1.10.6+repack-2) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:i386 (5.3.5-2) ... Setting up libscotch-dev (6.1.0-2) ... Setting up libboost-mpi1.74-dev (1.74.0-9) ... Setting up libparpack2-dev:i386 (3.8.0-1) ... Setting up libpetsc-real3.14:i386 (3.14.5+dfsg1-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/libpetsc_real.so.3.14.5 to provide /usr/lib/i386-linux-gnu/libpetsc.so.3.14 (libpetsc.so.3.14) in auto mode Setting up libhypre-dev:i386 (2.18.2-1) ... Setting up libptscotch-dev (6.1.0-2) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libhdf5-mpi-dev (1.10.6+repack-2) ... Setting up libslepc-real3.14 (3.14.2+dfsg1-1) ... update-alternatives: using /usr/lib/i386-linux-gnu/libslepc_real.so.3.14.2 to provide /usr/lib/i386-linux-gnu/libslepc.so.3.14 (libslepc.so.3.14) in auto mode Setting up libdolfinx-real2019.2:i386 (2019.2.0~git20210130.c14cb0a-4) ... Setting up libpetsc-real3.14-dev:i386 (3.14.5+dfsg1-4) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/libpetsc_real.so.3.14.5 to provide /usr/lib/i386-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real to provide /usr/lib/petscdir/3.14 (petsc3.14) in auto mode Setting up libslepc-real3.14-dev (3.14.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/libslepc_real.so.3.14.2 to provide /usr/lib/i386-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real to provide /usr/lib/slepcdir/3.14 (slepc3.14) in auto mode Setting up libdolfinx-real-dev:i386 (2019.2.0~git20210130.c14cb0a-4) ... Setting up libdolfinx-dev (2019.2.0~git20210130.c14cb0a-4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.0~git20210119.80e82ac-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_configure -O--buildsystem=cmake -O--sourcedirectory=src cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu ../src -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /usr/share/dolfinx/cmake/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /usr/share/dolfinx/cmake/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:13 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Found Boost 1.74.0 at /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' [ 11%] Generating Poisson.c [ 22%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Poisson.ufl ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Elasticity.ufl cd "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= Dependee "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" is newer than depender "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/depend.internal". Dependee "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/depend.internal". Scanning dependencies of target dolfinx-scaling-test make[3]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' [ 33%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 44%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -std=c++17 -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/main.cpp" [ 55%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem 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-Wl,-rpath,/usr/lib/i386-linux-gnu/openmpi/lib:/usr/lib/i386-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib: /usr/lib/i386-linux-gnu/libdolfinx_real.so.2019.2.9.99 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/i386-linux-gnu/libbasix.so /usr/lib/i386-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu ==== elasticity weak scaling (8 processes with ndofs=10000) ==== UnitCube (29x26x32) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: weak Num processes: 8 Num cells 144768 Total degrees of freedom: 80190 Average degrees of freedom per process: 10023 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.4027 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 8 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 8 MPI processes type: bjacobi number of blocks = 8 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.5054 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=558, cols=558, bs=6 package used to perform factorization: petsc total: nonzeros=256068, allocated nonzeros=256068 using I-node routines: found 165 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=558, cols=558, bs=6 total: nonzeros=170100, allocated nonzeros=170100 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 186 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=558, cols=558, bs=6 total: nonzeros=170100, allocated nonzeros=170100 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 186 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.173878, max = 1.91266 eigenvalues estimate via cg min 0.0281691, max 1.73878 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=6450, cols=6450, bs=6 total: nonzeros=1206324, allocated nonzeros=1206324 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 188 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.261629, max = 2.87792 eigenvalues estimate via cg min 0.0482691, max 2.61629 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3171 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3171 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 0.247789 0.247789 Build dofmap data | 2 0.007147 0.014295 Build sparsity | 1 0.004176 0.004176 Compute SCOTCH graph re-ordering | 2 0.000588 0.001176 Compute dof reordering map | 2 0.003652 0.007304 Compute entities of dim = 1 | 1 0.071199 0.071199 Compute entities of dim = 2 | 1 0.054230 0.054230 Compute graph partition (SCOTCH) | 1 0.193780 0.193780 Compute local part of mesh dual graph | 1 0.023275 0.023275 Compute local-to-local map | 1 0.000382 0.000382 Compute non-local part of mesh dual graph | 1 0.004975 0.004975 Compute-local-to-global links for global/local adjacency list | 1 0.000184 0.000184 Distribute in graph creation AdjacencyList | 1 0.002039 0.002039 Extract partition boundaries from SCOTCH graph | 1 0.000414 0.000414 Fetch float data from remote processes | 1 0.000406 0.000406 Get SCOTCH graph data | 1 0.000002 0.000002 Init dofmap from element dofmap | 2 0.002534 0.005068 PETSc Krylov solver | 1 0.725281 0.725281 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000182 0.000182 SCOTCH: call SCOTCH_dgraphHalo | 1 0.000288 0.000288 SCOTCH: call SCOTCH_dgraphPart | 1 0.191780 0.191780 SCOTCH: call SCOTCH_graphBuild | 2 0.000005 0.000009 SCOTCH: call SCOTCH_graphOrder | 2 0.000523 0.001045 SparsityPattern::assemble | 1 0.009174 0.009174 TOPOLOGY: Create sets | 1 0.005954 0.005954 ZZZ Assemble matrix | 1 0.096414 0.096414 ZZZ Assemble vector | 1 0.005314 0.005314 ZZZ Create Mesh | 1 0.248142 0.248142 ZZZ Create RHS function | 1 0.025421 0.025421 ZZZ Create boundary conditions | 1 0.015492 0.015492 ZZZ Create forms | 1 0.000054 0.000054 ZZZ Create mesh entity permutations | 1 0.131926 0.131926 ZZZ Create near-nullspace | 1 0.017775 0.017775 ZZZ FunctionSpace | 1 0.007724 0.007724 ZZZ Solve | 1 0.725437 0.725437 *** Number of Krylov iterations: 16 *** Solution norm: 6.02584e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/dolfinx-scaling-test on a named ionos6-i386 with 8 processors, by pbuilder1 Thu Jun 23 20:49:35 2022 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.291e+00 1.000 1.291e+00 Objects: 3.780e+02 1.005 3.762e+02 Flop: 2.889e+08 1.388 2.271e+08 1.817e+09 Flop/sec: 2.237e+08 1.388 1.758e+08 1.407e+09 MPI Messages: 2.378e+03 1.854 1.690e+03 1.352e+04 MPI Message Lengths: 1.444e+07 2.000 5.946e+03 8.037e+07 MPI Reductions: 6.480e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.2915e+00 100.0% 1.8168e+09 100.0% 1.352e+04 100.0% 5.946e+03 100.0% 6.410e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 7.7863e-02 8.9 0.00e+00 0.0 7.8e+02 4.0e+00 9.5e+01 4 0 6 0 15 4 0 6 0 15 0 BuildTwoSidedF 76 1.0 7.7431e-02 9.0 0.00e+00 0.0 3.9e+02 6.0e+04 7.6e+01 4 0 3 29 12 4 0 3 29 12 0 MatMult 192 1.0 9.0746e-02 1.1 1.23e+08 1.2 6.9e+03 4.0e+03 0.0e+00 7 50 51 34 0 7 50 51 34 0 10076 MatMultAdd 34 1.0 5.8933e-02 7.2 8.97e+06 1.1 7.0e+02 1.3e+03 0.0e+00 4 4 5 1 0 4 4 5 1 0 1145 MatMultTranspose 34 1.0 1.0382e-02 1.2 8.98e+06 1.1 7.0e+02 1.3e+03 0.0e+00 1 4 5 1 0 1 4 5 1 0 6508 MatSolve 17 0.0 5.0556e-03 0.0 8.70e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1720 MatLUFactorSym 1 1.0 1.0615e-021375.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 3.2816e-0233080.3 7.53e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 2293 MatScale 6 1.0 6.0111e-04 1.1 6.33e+05 1.1 7.2e+01 1.1e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 7976 MatResidual 34 1.0 1.4601e-02 1.0 2.13e+07 1.2 1.2e+03 3.8e+03 0.0e+00 1 9 9 6 0 1 9 9 6 0 10768 MatAssemblyBegin 41 1.0 9.4387e-02 2.4 0.00e+00 0.0 3.9e+02 6.0e+04 1.6e+01 6 0 3 29 2 6 0 3 29 2 0 MatAssemblyEnd 41 1.0 4.8690e-02 1.0 2.41e+05 3.0 8.8e+02 3.8e+02 7.0e+01 4 0 7 0 11 4 0 7 0 11 20 MatGetRowIJ 1 0.0 1.3195e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 1.2306e-02 1.0 0.00e+00 0.0 4.9e+01 3.9e+04 3.0e+01 1 0 0 2 5 1 0 0 2 5 0 MatGetOrdering 1 0.0 3.0332e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 6.7704e-04 1.2 0.00e+00 0.0 5.0e+02 8.0e+02 8.0e+00 0 0 4 1 1 0 0 4 1 1 0 MatZeroEntries 2 1.0 2.8645e-04 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.1673e-03 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 2.6023e-03 1.0 6.65e+04 1.1 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 193 MatTranspose 4 1.0 4.0964e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 5.2742e-02 1.2 0.00e+00 0.0 3.7e+02 6.9e+03 2.0e+01 4 0 3 3 3 4 0 3 3 3 0 MatMatMultNum 2 1.0 8.7736e-03 1.0 7.44e+06 1.2 7.2e+01 2.2e+04 2.0e+00 1 3 1 2 0 1 3 1 2 0 6195 MatPtAPSymbolic 2 1.0 2.0312e-01 1.0 0.00e+00 0.0 4.5e+02 3.5e+04 1.4e+01 16 0 3 20 2 16 0 3 20 2 0 MatPtAPNumeric 2 1.0 1.9402e-01 1.0 7.73e+07 1.4 3.4e+02 4.1e+04 1.2e+01 15 28 3 17 2 15 28 3 17 2 2629 MatTrnMatMultSym 1 1.0 3.0623e-02 1.0 0.00e+00 0.0 2.4e+02 2.2e+04 1.3e+01 2 0 2 6 2 2 0 2 6 2 0 MatGetLocalMat 7 1.0 2.8555e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 4.7462e-03 1.2 0.00e+00 0.0 5.0e+02 3.2e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecDot 36 1.0 4.8905e-04 1.0 7.55e+05 1.1 0.0e+00 0.0e+00 3.6e+01 0 0 0 0 6 0 0 0 0 6 11805 VecMDot 20 1.0 1.1860e-03 2.5 1.24e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 8035 VecTDot 74 1.0 2.3516e-03 2.3 1.14e+06 1.1 0.0e+00 0.0e+00 7.4e+01 0 0 0 0 11 0 0 0 0 12 3730 VecNorm 68 1.0 2.3210e-03 2.0 1.00e+06 1.1 0.0e+00 0.0e+00 6.8e+01 0 0 0 0 10 0 0 0 0 11 3301 VecScale 28 1.0 9.3866e-05 1.1 1.87e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 15279 VecCopy 116 1.0 4.8691e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 179 1.0 2.9777e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 83 1.0 7.4757e-04 1.1 1.33e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 13664 VecAYPX 237 1.0 1.7577e-03 1.2 2.05e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 8959 VecAXPBYCZ 68 1.0 6.5542e-04 1.2 1.92e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 22472 VecMAXPY 22 1.0 3.4158e-04 1.1 1.47e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 32973 VecAssemblyBegin 61 1.0 6.0193e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 61 1.0 4.3704e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 180 1.0 1.8400e-03 1.2 1.02e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4238 VecScatterBegin 327 1.0 2.8602e-03 1.5 0.00e+00 0.0 1.1e+04 3.1e+03 0.0e+00 0 0 79 41 0 0 0 79 41 0 0 VecScatterEnd 327 1.0 6.5064e-02 3.7 3.87e+04 4.7 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 2 VecSetRandom 2 1.0 6.0741e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 5.3651e-04 1.2 5.61e+05 1.1 0.0e+00 0.0e+00 2.8e+01 0 0 0 0 4 0 0 0 0 4 8019 SFSetGraph 19 1.0 3.8993e-05 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 1.0059e-03 1.2 0.00e+00 0.0 1.2e+03 3.7e+02 1.9e+01 0 0 9 1 3 0 0 9 1 3 0 SFBcastOpBegin 302 1.0 2.4541e-03 1.6 0.00e+00 0.0 1.0e+04 3.1e+03 0.0e+00 0 0 76 40 0 0 0 76 40 0 0 SFBcastOpEnd 302 1.0 6.2166e-02 3.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 SFReduceBegin 35 1.0 2.8584e-04 1.5 0.00e+00 0.0 7.3e+02 1.3e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 35 1.0 2.7751e-03 4.3 3.87e+04 4.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 43 SFPack 337 1.0 1.0772e-03 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 337 1.0 1.3326e-04 1.7 3.87e+04 4.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 891 KSPSetUp 7 1.0 1.1058e-02 1.0 1.38e+07 1.2 7.2e+02 3.8e+03 7.2e+01 1 6 5 3 11 1 6 5 3 11 9328 KSPSolve 1 1.0 7.2322e-01 1.0 2.86e+08 1.4 1.3e+04 5.7e+03 5.5e+02 56 99 97 93 85 56 99 97 93 85 2477 KSPGMRESOrthog 20 1.0 1.5007e-03 1.9 2.48e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 12701 PCGAMGGraph_AGG 2 1.0 5.9136e-02 1.0 6.80e+05 1.2 3.6e+02 4.4e+02 3.8e+01 5 0 3 0 6 5 0 3 0 6 85 PCGAMGCoarse_AGG 2 1.0 3.2799e-02 1.0 0.00e+00 0.0 9.1e+02 6.7e+03 2.9e+01 3 0 7 8 4 3 0 7 8 5 0 PCGAMGProl_AGG 2 1.0 1.3399e-02 1.0 0.00e+00 0.0 2.3e+03 1.6e+03 1.9e+02 1 0 17 5 29 1 0 17 5 29 0 PCGAMGPOpt_AGG 2 1.0 5.2022e-02 1.0 2.35e+07 1.2 1.2e+03 5.9e+03 8.2e+01 4 10 9 9 13 4 10 9 9 13 3368 GAMG: createProl 2 1.0 1.5746e-01 1.0 2.42e+07 1.2 4.7e+03 3.6e+03 3.4e+02 12 10 35 21 52 12 10 35 21 53 1145 Graph 4 1.0 5.9034e-02 1.0 6.80e+05 1.2 3.6e+02 4.4e+02 3.8e+01 5 0 3 0 6 5 0 3 0 6 85 MIS/Agg 2 1.0 7.0470e-04 1.2 0.00e+00 0.0 5.0e+02 8.0e+02 8.0e+00 0 0 4 1 1 0 0 4 1 1 0 SA: col data 2 1.0 4.5154e-03 1.0 0.00e+00 0.0 2.1e+03 1.3e+03 1.7e+02 0 0 15 3 26 0 0 15 3 26 0 SA: frmProl0 2 1.0 8.4904e-03 1.0 0.00e+00 0.0 2.0e+02 4.5e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 3.9485e-02 1.0 8.01e+06 1.2 4.4e+02 9.4e+03 2.8e+01 3 3 3 5 4 3 3 3 5 4 1490 GAMG: partLevel 2 1.0 4.0942e-01 1.0 7.73e+07 1.4 8.9e+02 3.6e+04 8.1e+01 32 28 7 39 12 32 28 7 39 13 1246 repartition 1 1.0 1.3276e-02 1.0 0.00e+00 0.0 9.4e+01 2.1e+04 5.5e+01 1 0 1 2 8 1 0 1 2 9 0 Invert-Sort 1 1.0 9.3273e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 8.0679e-03 1.0 0.00e+00 0.0 3.5e+01 5.5e+04 1.6e+01 1 0 0 2 2 1 0 0 2 2 0 Move P 1 1.0 4.4074e-03 1.0 0.00e+00 0.0 1.4e+01 4.6e+02 1.7e+01 0 0 0 0 3 0 0 0 0 3 0 PCSetUp 2 1.0 6.2220e-01 1.1 1.71e+08 1.9 6.3e+03 8.1e+03 5.0e+02 45 48 47 64 77 45 48 47 64 78 1396 PCSetUpOnBlocks 17 1.0 4.3809e-02518.2 7.53e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 1718 PCApply 39 1.0 1.3387e-01 1.0 1.76e+08 1.8 6.3e+03 3.2e+03 4.0e+00 10 48 47 25 1 10 48 47 25 1 6539 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 25859512 0. Matrix Coarsen 2 2 728 0. Matrix Null Space 1 1 428 0. Index Set 55 55 116144 0. IS L to G Mapping 6 6 91932 0. Vec Scatter 17 17 7888 0. Vector 185 185 4140656 0. Star Forest Graph 19 19 13072 0. Krylov Solver 9 9 66712 0. Preconditioner 9 9 5592 0. Viewer 3 2 1064 0. PetscRandom 4 4 1560 0. ======================================================================================================================== Average time to get PetscTime(): 5.46e-08 Average time for MPI_Barrier(): 1.6758e-06 Average time for zero size MPI_Send(): 1.00012e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-i686-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/i386-linux-gnu -L/lib/i386-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak ==== elasticity strong scaling (8 processes with ndofs=80000) ==== UnitCube (29x26x32) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: strong Num processes: 8 Num cells 144768 Total degrees of freedom: 80190 Average degrees of freedom per process: 10023 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.3971 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 8 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 8 MPI processes type: bjacobi number of blocks = 8 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.48028 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=534, cols=534, bs=6 package used to perform factorization: petsc total: nonzeros=231012, allocated nonzeros=231012 using I-node routines: found 157 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=534, cols=534, bs=6 total: nonzeros=156060, allocated nonzeros=156060 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 178 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=534, cols=534, bs=6 total: nonzeros=156060, allocated nonzeros=156060 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 178 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.168541, max = 1.85395 eigenvalues estimate via cg min 0.0231776, max 1.68541 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=6360, cols=6360, bs=6 total: nonzeros=1201248, allocated nonzeros=1201248 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 232 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.261602, max = 2.87763 eigenvalues estimate via cg min 0.050131, max 2.61602 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3339 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3339 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 0.247969 0.247969 Build dofmap data | 2 0.007149 0.014298 Build sparsity | 1 0.004023 0.004023 Compute SCOTCH graph re-ordering | 2 0.000556 0.001112 Compute dof reordering map | 2 0.003623 0.007246 Compute entities of dim = 1 | 1 0.066146 0.066146 Compute entities of dim = 2 | 1 0.047856 0.047856 Compute graph partition (SCOTCH) | 1 0.193929 0.193929 Compute local part of mesh dual graph | 1 0.023221 0.023221 Compute local-to-local map | 1 0.000386 0.000386 Compute non-local part of mesh dual graph | 1 0.005157 0.005157 Compute-local-to-global links for global/local adjacency list | 1 0.000191 0.000191 Distribute in graph creation AdjacencyList | 1 0.002076 0.002076 Extract partition boundaries from SCOTCH graph | 1 0.000416 0.000416 Fetch float data from remote processes | 1 0.000364 0.000364 Get SCOTCH graph data | 1 0.000002 0.000002 Init dofmap from element dofmap | 2 0.002547 0.005094 PETSc Krylov solver | 1 0.698609 0.698609 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000172 0.000172 SCOTCH: call SCOTCH_dgraphHalo | 1 0.000293 0.000293 SCOTCH: call SCOTCH_dgraphPart | 1 0.191968 0.191968 SCOTCH: call SCOTCH_graphBuild | 2 0.000004 0.000009 SCOTCH: call SCOTCH_graphOrder | 2 0.000493 0.000986 SparsityPattern::assemble | 1 0.008893 0.008893 TOPOLOGY: Create sets | 1 0.005907 0.005907 ZZZ Assemble matrix | 1 0.095756 0.095756 ZZZ Assemble vector | 1 0.005364 0.005364 ZZZ Create Mesh | 1 0.248309 0.248309 ZZZ Create RHS function | 1 0.025461 0.025461 ZZZ Create boundary conditions | 1 0.015508 0.015508 ZZZ Create forms | 1 0.000055 0.000055 ZZZ Create mesh entity permutations | 1 0.120495 0.120495 ZZZ Create near-nullspace | 1 0.017633 0.017633 ZZZ FunctionSpace | 1 0.007683 0.007683 ZZZ Solve | 1 0.698783 0.698783 *** Number of Krylov iterations: 16 *** Solution norm: 6.02584e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/dolfinx-scaling-test on a named ionos6-i386 with 8 processors, by pbuilder1 Thu Jun 23 20:49:37 2022 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.252e+00 1.000 1.252e+00 Objects: 3.780e+02 1.005 3.762e+02 Flop: 2.776e+08 1.390 2.238e+08 1.790e+09 Flop/sec: 2.217e+08 1.390 1.787e+08 1.430e+09 MPI Messages: 2.401e+03 1.846 1.814e+03 1.451e+04 MPI Message Lengths: 1.317e+07 1.823 5.496e+03 7.977e+07 MPI Reductions: 6.490e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.2522e+00 100.0% 1.7902e+09 100.0% 1.451e+04 100.0% 5.496e+03 100.0% 6.420e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 7.4241e-02 9.6 0.00e+00 0.0 8.1e+02 4.0e+00 9.5e+01 3 0 6 0 15 3 0 6 0 15 0 BuildTwoSidedF 76 1.0 7.3904e-02 9.3 0.00e+00 0.0 3.9e+02 5.9e+04 7.6e+01 3 0 3 29 12 3 0 3 29 12 0 MatMult 192 1.0 1.1365e-01 1.4 1.22e+08 1.1 7.4e+03 3.7e+03 0.0e+00 8 51 51 34 0 8 51 51 34 0 8038 MatMultAdd 34 1.0 5.4731e-02 7.5 8.72e+06 1.1 7.3e+02 1.2e+03 0.0e+00 4 4 5 1 0 4 4 5 1 0 1219 MatMultTranspose 34 1.0 1.8135e-02 2.0 8.74e+06 1.1 7.3e+02 1.2e+03 0.0e+00 1 4 5 1 0 1 4 5 1 0 3685 MatSolve 17 0.0 4.4794e-03 0.0 7.85e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1751 MatLUFactorSym 1 1.0 1.1610e-021558.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 2.7684e-0226543.0 6.41e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 2317 MatScale 6 1.0 6.6205e-04 1.2 6.20e+05 1.1 7.8e+01 1.0e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 7176 MatResidual 34 1.0 1.9181e-02 1.3 2.11e+07 1.1 1.3e+03 3.5e+03 0.0e+00 1 9 9 6 0 1 9 9 6 0 8188 MatAssemblyBegin 41 1.0 9.2207e-02 2.7 0.00e+00 0.0 3.9e+02 5.9e+04 1.6e+01 5 0 3 29 2 5 0 3 29 2 0 MatAssemblyEnd 41 1.0 4.0574e-02 1.0 1.84e+05 2.8 9.2e+02 3.6e+02 7.0e+01 3 0 6 0 11 3 0 6 0 11 24 MatGetRowIJ 1 0.0 1.4281e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 1.1592e-02 1.0 0.00e+00 0.0 4.9e+01 3.6e+04 3.0e+01 1 0 0 2 5 1 0 0 2 5 0 MatGetOrdering 1 0.0 2.9398e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 6.6645e-04 1.1 0.00e+00 0.0 5.8e+02 8.0e+02 9.0e+00 0 0 4 1 1 0 0 4 1 1 0 MatZeroEntries 2 1.0 2.6889e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 5.7037e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 3.1944e-03 1.1 6.75e+04 1.2 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 157 MatTranspose 4 1.0 4.2985e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 4.9804e-02 1.1 0.00e+00 0.0 3.9e+02 6.6e+03 2.0e+01 4 0 3 3 3 4 0 3 3 3 0 MatMatMultNum 2 1.0 9.6777e-03 1.0 7.45e+06 1.2 7.8e+01 2.1e+04 2.0e+00 1 3 1 2 0 1 3 1 2 0 5610 MatPtAPSymbolic 2 1.0 1.8087e-01 1.0 0.00e+00 0.0 4.7e+02 3.3e+04 1.4e+01 14 0 3 19 2 14 0 3 19 2 0 MatPtAPNumeric 2 1.0 1.7391e-01 1.0 6.98e+07 1.3 3.5e+02 3.9e+04 1.2e+01 14 28 2 17 2 14 28 2 17 2 2864 MatTrnMatMultSym 1 1.0 2.9085e-02 1.0 0.00e+00 0.0 2.5e+02 2.0e+04 1.3e+01 2 0 2 6 2 2 0 2 6 2 0 MatGetLocalMat 7 1.0 2.8336e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 5.0105e-03 1.1 0.00e+00 0.0 5.5e+02 2.9e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecDot 36 1.0 4.7025e-04 1.0 7.45e+05 1.1 0.0e+00 0.0e+00 3.6e+01 0 0 0 0 6 0 0 0 0 6 12277 VecMDot 20 1.0 3.6739e-03 6.9 1.24e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 2591 VecTDot 74 1.0 7.8185e-03 7.9 1.13e+06 1.1 0.0e+00 0.0e+00 7.4e+01 0 0 0 0 11 0 0 0 0 12 1121 VecNorm 68 1.0 1.4546e-0210.5 9.90e+05 1.1 0.0e+00 0.0e+00 6.8e+01 0 0 0 0 10 0 0 0 0 11 526 VecScale 28 1.0 9.2142e-05 1.1 1.86e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 15554 VecCopy 116 1.0 5.0644e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 179 1.0 2.7972e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 83 1.0 8.8378e-04 1.3 1.32e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 11553 VecAYPX 237 1.0 2.0247e-03 1.4 2.04e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 7771 VecAXPBYCZ 68 1.0 7.2860e-04 1.3 1.91e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 20194 VecMAXPY 22 1.0 4.0001e-04 1.3 1.46e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 28128 VecAssemblyBegin 61 1.0 5.7058e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 61 1.0 4.2595e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 180 1.0 1.8475e-03 1.2 1.01e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4216 VecScatterBegin 327 1.0 3.6737e-03 1.8 0.00e+00 0.0 1.2e+04 2.8e+03 0.0e+00 0 0 79 41 0 0 0 79 41 0 0 VecScatterEnd 327 1.0 8.8109e-02 2.4 3.43e+04 4.9 0.0e+00 0.0e+00 0.0e+00 6 0 0 0 0 6 0 0 0 0 1 VecSetRandom 2 1.0 6.1563e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 6.7628e-04 1.6 5.57e+05 1.1 0.0e+00 0.0e+00 2.8e+01 0 0 0 0 4 0 0 0 0 4 6358 SFSetGraph 19 1.0 2.3752e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 9.4798e-04 1.1 0.00e+00 0.0 1.2e+03 3.6e+02 1.9e+01 0 0 8 1 3 0 0 8 1 3 0 SFBcastOpBegin 303 1.0 3.2737e-03 2.1 0.00e+00 0.0 1.1e+04 2.9e+03 0.0e+00 0 0 77 40 0 0 0 77 40 0 0 SFBcastOpEnd 303 1.0 8.5198e-02 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 0 SFReduceBegin 35 1.0 2.5639e-04 1.4 0.00e+00 0.0 7.6e+02 1.3e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 35 1.0 1.2257e-0212.6 3.43e+04 4.9 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 10 SFPack 338 1.0 1.2231e-03 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 338 1.0 1.1441e-04 1.5 3.43e+04 4.9 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1046 KSPSetUp 7 1.0 1.3499e-02 1.0 1.38e+07 1.1 7.8e+02 3.5e+03 7.2e+01 1 6 5 3 11 1 6 5 3 11 7633 KSPSolve 1 1.0 6.9747e-01 1.0 2.74e+08 1.4 1.4e+04 5.3e+03 5.5e+02 56 99 97 93 85 56 99 97 93 86 2530 KSPGMRESOrthog 20 1.0 3.9882e-03 4.6 2.47e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 4774 PCGAMGGraph_AGG 2 1.0 5.7268e-02 1.0 6.74e+05 1.1 3.9e+02 4.1e+02 3.8e+01 5 0 3 0 6 5 0 3 0 6 88 PCGAMGCoarse_AGG 2 1.0 3.1255e-02 1.0 0.00e+00 0.0 1.0e+03 6.1e+03 3.0e+01 2 0 7 8 5 2 0 7 8 5 0 PCGAMGProl_AGG 2 1.0 1.2402e-02 1.0 0.00e+00 0.0 2.4e+03 1.5e+03 1.9e+02 1 0 17 5 29 1 0 17 5 29 0 PCGAMGPOpt_AGG 2 1.0 5.5039e-02 1.0 2.35e+07 1.1 1.2e+03 5.5e+03 8.2e+01 4 10 9 9 13 4 10 9 9 13 3179 GAMG: createProl 2 1.0 1.5612e-01 1.0 2.42e+07 1.1 5.1e+03 3.3e+03 3.4e+02 12 10 35 21 52 12 10 35 21 53 1153 Graph 4 1.0 5.7189e-02 1.0 6.74e+05 1.1 3.9e+02 4.1e+02 3.8e+01 5 0 3 0 6 5 0 3 0 6 88 MIS/Agg 2 1.0 6.9276e-04 1.1 0.00e+00 0.0 5.8e+02 8.0e+02 9.0e+00 0 0 4 1 1 0 0 4 1 1 0 SA: col data 2 1.0 4.4292e-03 1.0 0.00e+00 0.0 2.2e+03 1.2e+03 1.7e+02 0 0 15 3 26 0 0 15 3 26 0 SA: frmProl0 2 1.0 7.6367e-03 1.0 0.00e+00 0.0 2.0e+02 4.4e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 4.0059e-02 1.0 8.03e+06 1.2 4.7e+02 8.9e+03 2.8e+01 3 3 3 5 4 3 3 3 5 4 1466 GAMG: partLevel 2 1.0 3.6567e-01 1.0 6.98e+07 1.3 9.1e+02 3.4e+04 8.1e+01 29 28 6 39 12 29 28 6 39 13 1362 repartition 1 1.0 1.2758e-02 1.0 0.00e+00 0.0 9.4e+01 1.9e+04 5.5e+01 1 0 1 2 8 1 0 1 2 9 0 Invert-Sort 1 1.0 6.5256e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 7.6854e-03 1.0 0.00e+00 0.0 3.5e+01 5.0e+04 1.6e+01 1 0 0 2 2 1 0 0 2 2 0 Move P 1 1.0 4.0437e-03 1.0 0.00e+00 0.0 1.4e+01 4.5e+02 1.7e+01 0 0 0 0 3 0 0 0 0 3 0 PCSetUp 2 1.0 5.7534e-01 1.1 1.56e+08 1.8 6.8e+03 7.5e+03 5.0e+02 43 47 47 64 77 43 47 47 64 78 1469 PCSetUpOnBlocks 17 1.0 3.9667e-02495.2 6.41e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 1617 PCApply 39 1.0 1.4772e-01 1.1 1.67e+08 1.8 6.8e+03 3.0e+03 4.0e+00 11 48 47 25 1 11 48 47 25 1 5830 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 25387368 0. Matrix Coarsen 2 2 728 0. Matrix Null Space 1 1 428 0. Index Set 55 55 92292 0. IS L to G Mapping 6 6 84852 0. Vec Scatter 17 17 7888 0. Vector 185 185 4283544 0. Star Forest Graph 19 19 13072 0. Krylov Solver 9 9 66712 0. Preconditioner 9 9 5592 0. Viewer 3 2 1064 0. PetscRandom 4 4 1560 0. ======================================================================================================================== Average time to get PetscTime(): 5.56e-08 Average time for MPI_Barrier(): 1.7656e-06 Average time for zero size MPI_Send(): 8.325e-07 #PETSc Option Table entries: --ndofs 80000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-i686-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/i386-linux-gnu -L/lib/i386-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 80000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 80000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong ==== poisson weak scaling (8 processes with ndofs=10000) ==== UnitCube (42x42x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: weak Num processes: 8 Num cells 444528 Total degrees of freedom: 79507 Average degrees of freedom per process: 9938 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=79507, cols=79507 total: nonzeros=1148743, allocated nonzeros=1148743 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 0.486179 0.486179 Build dofmap data | 2 0.020263 0.040526 Build sparsity | 1 0.011636 0.011636 Compute SCOTCH graph re-ordering | 2 0.001467 0.002934 Compute connectivity 2-3 | 1 0.001202 0.001202 Compute dof reordering map | 2 0.010420 0.020840 Compute entities of dim = 1 | 1 0.187660 0.187660 Compute entities of dim = 2 | 1 0.156504 0.156504 Compute graph partition (SCOTCH) | 1 0.327350 0.327350 Compute local part of mesh dual graph | 1 0.068028 0.068028 Compute local-to-local map | 1 0.001297 0.001297 Compute non-local part of mesh dual graph | 1 0.013216 0.013216 Compute-local-to-global links for global/local adjacency list | 1 0.000809 0.000809 Distribute in graph creation AdjacencyList | 1 0.007688 0.007688 Extract partition boundaries from SCOTCH graph | 1 0.001053 0.001053 Fetch float data from remote processes | 1 0.001210 0.001210 Get SCOTCH graph data | 1 0.000003 0.000003 Init dofmap from element dofmap | 2 0.007905 0.015809 PETSc Krylov solver | 1 0.389952 0.389952 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000304 0.000304 SCOTCH: call SCOTCH_dgraphHalo | 1 0.000889 0.000889 SCOTCH: call SCOTCH_dgraphPart | 1 0.322975 0.322975 SCOTCH: call SCOTCH_graphBuild | 2 0.000009 0.000019 SCOTCH: call SCOTCH_graphOrder | 2 0.001322 0.002645 SparsityPattern::assemble | 1 0.024249 0.024249 TOPOLOGY: Create sets | 1 0.017256 0.017256 ZZZ Assemble | 1 0.278796 0.278796 ZZZ Assemble matrix | 1 0.046294 0.046294 ZZZ Assemble vector | 1 0.009905 0.009905 ZZZ Create Mesh | 1 0.486578 0.486578 ZZZ Create mesh entity permutations | 1 0.363718 0.363718 ZZZ FunctionSpace | 1 0.020416 0.020416 ZZZ Solve | 1 0.390120 0.390120 *** Number of Krylov iterations: 7 *** Solution norm: 14540.9 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/dolfinx-scaling-test on a named ionos6-i386 with 8 processors, by pbuilder1 Thu Jun 23 20:49:39 2022 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.542e+00 1.000 1.542e+00 Objects: 3.800e+01 1.000 3.800e+01 Flop: 3.603e+06 1.064 3.515e+06 2.812e+07 Flop/sec: 2.336e+06 1.064 2.279e+06 1.823e+07 MPI Messages: 1.260e+02 1.750 9.000e+01 7.200e+02 MPI Message Lengths: 5.869e+05 1.497 5.155e+03 3.712e+06 MPI Reductions: 6.600e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.5424e+00 100.0% 2.8119e+07 100.0% 7.200e+02 100.0% 5.155e+03 100.0% 5.900e+01 89.4% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 6.8301e-03112.1 0.00e+00 0.0 1.6e+02 4.0e+00 4.0e+00 0 0 22 0 6 0 0 22 0 7 0 BuildTwoSidedF 1 1.0 6.7452e-03151.5 0.00e+00 0.0 8.0e+01 1.4e+04 1.0e+00 0 0 11 29 2 0 0 11 29 2 0 MatMult 7 1.0 2.3029e-03 1.1 1.99e+06 1.1 2.8e+02 3.5e+03 0.0e+00 0 55 39 26 0 0 55 39 26 0 6742 MatConvert 1 1.0 6.6034e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 6 0 0 0 0 7 0 MatAssemblyBegin 2 1.0 8.8120e-03 2.1 0.00e+00 0.0 8.0e+01 1.4e+04 1.0e+00 0 0 11 29 2 0 0 11 29 2 0 MatAssemblyEnd 2 1.0 5.9654e-03 1.0 7.68e+03 1.8 8.0e+01 8.8e+02 9.0e+00 0 0 11 2 14 0 0 11 2 15 7 MatGetRowIJ 2 1.0 9.9800e-07 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 2.1239e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 2.4075e-04 3.7 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 2 0 0 0 0 2 0 VecTDot 14 1.0 3.7541e-04 2.0 2.86e+05 1.1 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 24 5930 VecNorm 9 1.0 9.5547e-04 5.4 1.84e+05 1.1 0.0e+00 0.0e+00 9.0e+00 0 5 0 0 14 0 5 0 0 15 1498 VecCopy 2 1.0 5.3495e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 11 1.0 7.9756e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.7506e-04 1.1 2.86e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 12717 VecAYPX 6 1.0 9.8984e-05 1.1 1.23e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 9639 VecScatterBegin 10 1.0 2.0927e-04 1.3 0.00e+00 0.0 4.0e+02 2.8e+03 0.0e+00 0 0 56 31 0 0 0 56 31 0 0 VecScatterEnd 10 1.0 1.8322e-03 5.8 1.13e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3 SFSetGraph 3 1.0 7.6730e-06 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 2.1494e-04 1.2 0.00e+00 0.0 2.4e+02 5.1e+02 3.0e+00 0 0 33 3 5 0 0 33 3 5 0 SFBcastOpBegin 9 1.0 1.6511e-04 1.3 0.00e+00 0.0 3.6e+02 3.0e+03 0.0e+00 0 0 50 29 0 0 0 50 29 0 0 SFBcastOpEnd 9 1.0 4.1958e-04 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 2.0183e-05 1.4 0.00e+00 0.0 4.0e+01 1.3e+03 0.0e+00 0 0 6 1 0 0 0 6 1 0 0 SFReduceEnd 1 1.0 1.4640e-0372.7 1.13e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4 SFPack 10 1.0 6.5881e-05 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 10 1.0 1.6424e-05 1.4 1.13e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 389 KSPSetUp 1 1.0 6.6954e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 3.8963e-01 1.0 2.85e+06 1.1 2.8e+02 3.5e+03 2.6e+01 25 79 39 26 39 25 79 39 26 44 57 PCSetUp 1 1.0 2.9272e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 19 0 0 0 6 19 0 0 0 7 0 PCApply 8 1.0 9.3774e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 6 0 0 0 0 6 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2064400 0. Index Set 6 6 25004 0. IS L to G Mapping 4 4 179280 0. Vec Scatter 3 3 1392 0. Vector 14 14 377760 0. Star Forest Graph 3 3 2064 0. Krylov Solver 1 1 952 0. Preconditioner 1 1 956 0. Viewer 2 1 532 0. ======================================================================================================================== Average time to get PetscTime(): 5.51e-08 Average time for MPI_Barrier(): 1.921e-06 Average time for zero size MPI_Send(): 1.31325e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-i686-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/i386-linux-gnu -L/lib/i386-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak ==== poisson strong scaling (8 processes with ndofs=80000) ==== UnitCube (42x42x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: strong Num processes: 8 Num cells 444528 Total degrees of freedom: 79507 Average degrees of freedom per process: 9938 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=79507, cols=79507 total: nonzeros=1148743, allocated nonzeros=1148743 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 0.483456 0.483456 Build dofmap data | 2 0.021079 0.042159 Build sparsity | 1 0.013282 0.013282 Compute SCOTCH graph re-ordering | 2 0.001603 0.003205 Compute connectivity 2-3 | 1 0.001181 0.001181 Compute dof reordering map | 2 0.010530 0.021059 Compute entities of dim = 1 | 1 0.192362 0.192362 Compute entities of dim = 2 | 1 0.155131 0.155131 Compute graph partition (SCOTCH) | 1 0.325136 0.325136 Compute local part of mesh dual graph | 1 0.063891 0.063891 Compute local-to-local map | 1 0.001297 0.001297 Compute non-local part of mesh dual graph | 1 0.017591 0.017591 Compute-local-to-global links for global/local adjacency list | 1 0.000770 0.000770 Distribute in graph creation AdjacencyList | 1 0.007459 0.007459 Extract partition boundaries from SCOTCH graph | 1 0.001052 0.001052 Fetch float data from remote processes | 1 0.001200 0.001200 Get SCOTCH graph data | 1 0.000003 0.000003 Init dofmap from element dofmap | 2 0.007876 0.015752 PETSc Krylov solver | 1 0.441848 0.441848 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000276 0.000276 SCOTCH: call SCOTCH_dgraphHalo | 1 0.000896 0.000896 SCOTCH: call SCOTCH_dgraphPart | 1 0.320796 0.320796 SCOTCH: call SCOTCH_graphBuild | 2 0.000009 0.000019 SCOTCH: call SCOTCH_graphOrder | 2 0.001462 0.002923 SparsityPattern::assemble | 1 0.024725 0.024725 TOPOLOGY: Create sets | 1 0.017469 0.017469 ZZZ Assemble | 1 0.283654 0.283654 ZZZ Assemble matrix | 1 0.047903 0.047903 ZZZ Assemble vector | 1 0.009937 0.009937 ZZZ Create Mesh | 1 0.483801 0.483801 ZZZ Create mesh entity permutations | 1 0.367084 0.367084 ZZZ FunctionSpace | 1 0.021757 0.021757 ZZZ Solve | 1 0.442014 0.442014 *** Number of Krylov iterations: 8 *** Solution norm: 14540.9 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/dolfinx-scaling-test on a named ionos6-i386 with 8 processors, by pbuilder1 Thu Jun 23 20:49:41 2022 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.601e+00 1.000 1.601e+00 Objects: 3.800e+01 1.000 3.800e+01 Flop: 3.994e+06 1.060 3.911e+06 3.129e+07 Flop/sec: 2.495e+06 1.060 2.443e+06 1.954e+07 MPI Messages: 1.140e+02 2.000 8.550e+01 6.840e+02 MPI Message Lengths: 6.233e+05 1.527 5.635e+03 3.854e+06 MPI Reductions: 6.900e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.6011e+00 100.0% 3.1291e+07 100.0% 6.840e+02 100.0% 5.635e+03 100.0% 6.200e+01 89.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 8.9647e-03165.5 0.00e+00 0.0 1.4e+02 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 6 0 BuildTwoSidedF 1 1.0 8.8754e-03222.3 0.00e+00 0.0 7.2e+01 1.5e+04 1.0e+00 0 0 11 28 1 0 0 11 28 2 0 MatMult 8 1.0 2.8009e-03 1.1 2.26e+06 1.1 2.9e+02 3.9e+03 0.0e+00 0 57 42 29 0 0 57 42 29 0 6335 MatConvert 1 1.0 6.6057e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 6 0 0 0 0 6 0 MatAssemblyBegin 2 1.0 1.1004e-02 2.6 0.00e+00 0.0 7.2e+01 1.5e+04 1.0e+00 0 0 11 28 1 0 0 11 28 2 0 MatAssemblyEnd 2 1.0 6.0374e-03 1.0 7.90e+03 1.9 7.2e+01 9.7e+02 9.0e+00 0 0 11 2 13 0 0 11 2 15 7 MatGetRowIJ 2 1.0 1.3110e-06 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 2.1194e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 3.2737e-04 3.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 16 1.0 5.2092e-04 2.1 3.26e+05 1.1 0.0e+00 0.0e+00 1.6e+01 0 8 0 0 23 0 8 0 0 26 4884 VecNorm 10 1.0 1.3697e-03 4.6 2.04e+05 1.1 0.0e+00 0.0e+00 1.0e+01 0 5 0 0 14 0 5 0 0 16 1161 VecCopy 2 1.0 4.2722e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 12 1.0 7.4904e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 16 1.0 2.0062e-04 1.1 3.26e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 12682 VecAYPX 7 1.0 1.2253e-04 1.1 1.43e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 9084 VecScatterBegin 11 1.0 2.2630e-04 1.4 0.00e+00 0.0 4.0e+02 3.2e+03 0.0e+00 0 0 58 33 0 0 0 58 33 0 0 VecScatterEnd 11 1.0 1.8609e-0310.1 1.17e+03 1.9 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3 SFSetGraph 3 1.0 7.5150e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 2.1444e-04 1.2 0.00e+00 0.0 2.2e+02 5.6e+02 3.0e+00 0 0 32 3 4 0 0 32 3 5 0 SFBcastOpBegin 10 1.0 1.7876e-04 1.4 0.00e+00 0.0 3.6e+02 3.4e+03 0.0e+00 0 0 53 32 0 0 0 53 32 0 0 SFBcastOpEnd 10 1.0 5.5549e-04 3.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 2.5266e-05 2.1 0.00e+00 0.0 3.6e+01 1.4e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 1 1.0 1.4788e-0386.9 1.17e+03 1.9 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4 SFPack 11 1.0 6.7388e-05 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 11 1.0 1.8487e-05 1.8 1.17e+03 1.9 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 348 KSPSetUp 1 1.0 6.1699e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 4.4143e-01 1.0 3.24e+06 1.1 2.9e+02 3.9e+03 2.9e+01 28 81 42 29 42 28 81 42 29 47 57 PCSetUp 1 1.0 3.1886e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 20 0 0 0 6 20 0 0 0 6 0 PCApply 9 1.0 1.1871e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2096592 0. Index Set 6 6 16796 0. IS L to G Mapping 4 4 174708 0. Vec Scatter 3 3 1392 0. Vector 14 14 365168 0. Star Forest Graph 3 3 2064 0. Krylov Solver 1 1 952 0. Preconditioner 1 1 956 0. Viewer 2 1 532 0. ======================================================================================================================== Average time to get PetscTime(): 9.25e-08 Average time for MPI_Barrier(): 1.9872e-06 Average time for zero size MPI_Send(): 1.44587e-06 #PETSc Option Table entries: --ndofs 80000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-i686-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/i386-linux-gnu -L/lib/i386-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 80000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 80000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/fenicsx-performance-tests-0.0\~git20210119.80e82ac/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test -- Set runtime path of "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test" to "" make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_i386.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.0~git20210119.80e82ac-1_i386.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.0~git20210119.80e82ac-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10341 and its subdirectories I: Current time: Thu Jun 23 20:49:47 -12 2022 I: pbuilder-time-stamp: 1656060587