I: pbuilder: network access will be disabled during build I: Current time: Sat May 22 16:26:52 +14 2021 I: pbuilder-time-stamp: 1621650412 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.gcTbzoOn/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 13 05:42:28 2021 +14 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.0~git20210119.80e82ac dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9721/tmp/hooks/D01_modify_environment starting debug: Running on ionos12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/9721/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/9721/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=3e91340e14d24a4ab1baf896d0567444 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=9721 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.oDXJfvSbBs/pbuilderrc_5uX7 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.oDXJfvSbBs/b2 --logfile b2/build.log --extrapackages usrmerge fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 25 10:57 bash -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp -rwxr-xr-x 1 root root 128724 Dec 11 03:23 dash -rwxr-xr-x 1 root root 124904 Sep 23 2020 date -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd -rwxr-xr-x 1 root root 100752 Sep 23 2020 df -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln -rwxr-xr-x 1 root root 55572 Feb 8 2020 login -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Feb 25 10:57 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 May 22 16:28 sh -> bash lrwxrwxrwx 1 root root 4 May 20 23:26 sh.distrib -> dash -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch -rwxr-xr-x 1 root root 34664 Sep 23 2020 true -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/9721/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~), mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libcamd2{a} libcbor0{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real2019.2{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphblas3{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-cpp-103-1{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102{a} libhdf5-openmpi-hl-100{a} libhdf5-openmpi-hl-cpp-100{a} libhdf5-openmpi-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjsoncpp24{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmetis5{a} libmongoose2{a} libmpdec3{a} libmumps-5.3{a} libmumps-dev{a} libmumps-headers-dev{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.14{a} libpetsc-real3.14-dev{a} libpetsc3.14-dev-common{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libprocps8{a} libpsl5{a} libpsm-infinipath1{a} libptscotch-6.1{a} libptscotch-dev{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.1{a} libscotch-6.1{a} libscotch-dev{a} libsigsegv2{a} libslepc-real3.14{a} libslepc-real3.14-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist6{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-ffcx{a} python3-fiat{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-sympy{a} python3-ufl{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common ksh libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgl1-mesa-dev libglib2.0-data libgpm2 libldap-common libmail-sendmail-perl libpetsc3.14-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-pil shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 249 newly installed, 0 to remove and 0 not upgraded. Need to get 170 MB of archives. After unpacking 995 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libcbor0 i386 0.5.0+dfsg-2 [26.2 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libfido2-1 i386 1.6.0-2 [59.9 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 openssh-client i386 1:8.4p1-5 [991 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.6 [727 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-2 [244 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.2 [372 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-1 [139 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 gfortran i386 4:10.2.1-1 [1436 B] Get: 73 http://deb.debian.org/debian bullseye/main i386 libnl-3-200 i386 3.4.0-1+b1 [66.4 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-200 i386 3.4.0-1+b1 [168 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libibverbs1 i386 33.1+git20210317-1 [64.4 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 ibverbs-providers i386 33.1+git20210317-1 [275 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-6 [209 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B] Get: 80 http://deb.debian.org/debian bullseye/main i386 libaec-dev i386 1.0.4-1 [21.5 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libsuitesparseconfig5 i386 1:5.8.1+dfsg-2 [23.1 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libamd2 i386 1:5.8.1+dfsg-2 [30.7 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libarpack2 i386 3.8.0-1 [103 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libblas-dev i386 3.9.0-3 [157 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 liblapack-dev i386 3.9.0-3 [3759 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libarpack2-dev i386 3.8.0-1 [123 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libbasix0 i386 0.0.1~git20210122.4f10ef2-2 [157 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libeigen3-dev all 3.3.9-2 [858 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libbasix-dev i386 0.0.1~git20210122.4f10ef2-2 [4220 B] Get: 94 http://deb.debian.org/debian bullseye/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libboost-atomic1.74.0 i386 1.74.0-9 [244 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libboost-atomic1.74-dev i386 1.74.0-9 [245 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libboost-chrono1.74.0 i386 1.74.0-9 [254 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libboost-chrono1.74-dev i386 1.74.0-9 [262 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libboost-chrono-dev i386 1.74.0.3 [4956 B] Get: 100 http://deb.debian.org/debian bullseye/main i386 libboost-date-time1.74.0 i386 1.74.0-9 [241 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libboost-serialization1.74.0 i386 1.74.0-9 [346 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libboost-serialization1.74-dev i386 1.74.0-9 [390 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libboost-date-time1.74-dev i386 1.74.0-9 [250 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 105 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem1.74.0 i386 1.74.0-9 [288 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74.0 i386 1.74.0-9 [241 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74-dev i386 1.74.0-9 [243 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem1.74-dev i386 1.74.0-9 [311 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem-dev i386 1.74.0.3 [4368 B] Get: 110 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74.0 i386 1.74.0-9 [542 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-6 [9799 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74-dev i386 1.74.0-9 [618 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams1.74-dev i386 1.74.0-9 [275 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get: 115 http://deb.debian.org/debian bullseye/main i386 libboost-math1.74.0 i386 1.74.0-9 [464 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libboost-math1.74-dev i386 1.74.0-9 [568 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libboost-math-dev i386 1.74.0.3 [4536 B] Get: 118 http://deb.debian.org/debian bullseye/main i386 libevent-core-2.1-7 i386 2.1.12-stable-1 [148 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-1 [57.3 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.1 [178 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 librdmacm1 i386 33.1+git20210317-1 [74.9 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libfabric1 i386 1.11.0-2 [518 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 libhwloc15 i386 2.4.1+dfsg-1 [164 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.0-2 [310 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.0-2 [796 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libxnvctrl0 i386 460.56-1 [26.8 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 ocl-icd-libopencl1 i386 2.2.14-2 [45.0 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 libhwloc-plugins i386 2.4.1+dfsg-1 [22.0 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 libpmix2 i386 4.0.0-4 [582 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 libopenmpi3 i386 4.1.0-8 [2143 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 libboost-mpi1.74.0 i386 1.74.0-9 [283 kB] Get: 137 http://deb.debian.org/debian bullseye/main i386 openmpi-common all 4.1.0-8 [179 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 libnl-3-dev i386 3.4.0-1+b1 [107 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-dev i386 3.4.0-1+b1 [192 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 libibverbs-dev i386 33.1+git20210317-1 [521 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 libnuma1 i386 2.0.12-1+b1 [27.9 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 libnuma-dev i386 2.0.12-1+b1 [41.2 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 libltdl7 i386 2.4.6-15 [392 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 libltdl-dev i386 2.4.6-15 [164 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 libhwloc-dev i386 2.4.1+dfsg-1 [250 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 libevent-2.1-7 i386 2.1.12-stable-1 [203 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-1 [116 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-1 [64.9 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 libevent-dev i386 2.1.12-stable-1 [332 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 libpmix-dev i386 4.0.0-4 [717 kB] Get: 151 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 openmpi-bin i386 4.1.0-8 [209 kB] Get: 155 http://deb.debian.org/debian bullseye/main i386 libopenmpi-dev i386 4.1.0-8 [1142 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 mpi-default-dev i386 1.13 [5476 B] Get: 157 http://deb.debian.org/debian bullseye/main i386 libboost-mpi1.74-dev i386 1.74.0-9 [306 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 libboost-mpi-dev i386 1.74.0.3 [4420 B] Get: 159 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74.0 i386 1.74.0-9 [365 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74-dev i386 1.74.0-9 [397 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 libboost-program-options-dev i386 1.74.0.3 [4344 B] Get: 162 http://deb.debian.org/debian bullseye/main i386 libboost-serialization-dev i386 1.74.0.3 [4560 B] Get: 163 http://deb.debian.org/debian bullseye/main i386 libboost-thread1.74.0 i386 1.74.0-9 [282 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 libboost-thread1.74-dev i386 1.74.0-9 [294 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 libboost-thread-dev i386 1.74.0.3 [4356 B] Get: 166 http://deb.debian.org/debian bullseye/main i386 libboost-timer1.74.0 i386 1.74.0-9 [252 kB] Get: 167 http://deb.debian.org/debian bullseye/main i386 libboost-timer1.74-dev i386 1.74.0-9 [256 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 libboost-timer-dev i386 1.74.0.3 [4456 B] Get: 169 http://deb.debian.org/debian bullseye/main i386 libbtf1 i386 1:5.8.1+dfsg-2 [23.6 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 libcamd2 i386 1:5.8.1+dfsg-2 [31.2 kB] Get: 171 http://deb.debian.org/debian bullseye/main i386 libccolamd2 i386 1:5.8.1+dfsg-2 [32.1 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 libcolamd2 i386 1:5.8.1+dfsg-2 [27.9 kB] Get: 173 http://deb.debian.org/debian bullseye/main i386 libmetis5 i386 5.1.0.dfsg-7 [171 kB] Get: 174 http://deb.debian.org/debian bullseye/main i386 libcholmod3 i386 1:5.8.1+dfsg-2 [242 kB] Get: 175 http://deb.debian.org/debian bullseye/main i386 libcombblas1.16.0 i386 1.6.2-6 [282 kB] Get: 176 http://deb.debian.org/debian bullseye/main i386 libcxsparse3 i386 1:5.8.1+dfsg-2 [64.3 kB] Get: 177 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-103-1 i386 1.10.6+repack-2 [1193 kB] Get: 178 http://deb.debian.org/debian bullseye/main i386 libfftw3-double3 i386 3.3.8-2 [640 kB] Get: 179 http://deb.debian.org/debian bullseye/main i386 libfftw3-long3 i386 3.3.8-2 [326 kB] Get: 180 http://deb.debian.org/debian bullseye/main i386 libfftw3-single3 i386 3.3.8-2 [652 kB] Get: 181 http://deb.debian.org/debian bullseye/main i386 libfftw3-mpi3 i386 3.3.8-2 [70.2 kB] Get: 182 http://deb.debian.org/debian bullseye/main i386 libsuperlu-dist6 i386 6.2.0+dfsg1-3 [407 kB] Get: 183 http://deb.debian.org/debian bullseye/main i386 libhypre i386 2.18.2-1 [1278 kB] Get: 184 http://deb.debian.org/debian bullseye/main i386 libklu1 i386 1:5.8.1+dfsg-2 [57.5 kB] Get: 185 http://deb.debian.org/debian bullseye/main i386 mpi-default-bin i386 1.13 [4672 B] Get: 186 http://deb.debian.org/debian bullseye/main i386 libscalapack-openmpi2.1 i386 2.1.0-4 [1391 kB] Get: 187 http://deb.debian.org/debian bullseye/main i386 libmumps-5.3 i386 5.3.5-2 [1639 kB] Get: 188 http://deb.debian.org/debian bullseye/main i386 libptscotch-6.1 i386 6.1.0-2 [787 kB] Get: 189 http://deb.debian.org/debian bullseye/main i386 libsuperlu5 i386 5.2.2+dfsg1-2 [161 kB] Get: 190 http://deb.debian.org/debian bullseye/main i386 libumfpack5 i386 1:5.8.1+dfsg-2 [156 kB] Get: 191 http://deb.debian.org/debian bullseye/main i386 libpetsc-real3.14 i386 3.14.5+dfsg1-4 [4769 kB] Get: 192 http://deb.debian.org/debian bullseye/main i386 libparpack2 i386 3.8.0-1 [97.3 kB] Get: 193 http://deb.debian.org/debian bullseye/main i386 libslepc-real3.14 i386 3.14.2+dfsg1-1 [876 kB] Get: 194 http://deb.debian.org/debian bullseye/main i386 libdolfinx-real2019.2 i386 2019.2.0~git20210130.c14cb0a-4 [686 kB] Get: 195 http://deb.debian.org/debian bullseye/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 196 http://deb.debian.org/debian bullseye/main i386 libpetsc3.14-dev-common all 3.14.5+dfsg1-4 [206 kB] Get: 197 http://deb.debian.org/debian bullseye/main i386 libgraphblas3 i386 1:5.8.1+dfsg-2 [6146 kB] Get: 198 http://deb.debian.org/debian bullseye/main i386 libldl2 i386 1:5.8.1+dfsg-2 [23.4 kB] Get: 199 http://deb.debian.org/debian bullseye/main i386 libmongoose2 i386 1:5.8.1+dfsg-2 [49.4 kB] Get: 200 http://deb.debian.org/debian bullseye/main i386 librbio2 i386 1:5.8.1+dfsg-2 [34.4 kB] Get: 201 http://deb.debian.org/debian bullseye/main i386 libspqr2 i386 1:5.8.1+dfsg-2 [83.5 kB] Get: 202 http://deb.debian.org/debian bullseye/main i386 libsliplu1 i386 1:5.8.1+dfsg-2 [56.5 kB] Get: 203 http://deb.debian.org/debian bullseye/main i386 libsuitesparse-dev i386 1:5.8.1+dfsg-2 [6444 kB] Get: 204 http://deb.debian.org/debian bullseye/main i386 libsuperlu-dev i386 5.2.2+dfsg1-2 [21.4 kB] Get: 205 http://deb.debian.org/debian bullseye/main i386 libhypre-dev i386 2.18.2-1 [154 kB] Get: 206 http://deb.debian.org/debian bullseye/main i386 libscotch-6.1 i386 6.1.0-2 [496 kB] Get: 207 http://deb.debian.org/debian bullseye/main i386 libscotch-dev i386 6.1.0-2 [1506 kB] Get: 208 http://deb.debian.org/debian bullseye/main i386 libptscotch-dev i386 6.1.0-2 [1420 kB] Get: 209 http://deb.debian.org/debian bullseye/main i386 libscalapack-openmpi-dev i386 2.1.0-4 [13.7 kB] Get: 210 http://deb.debian.org/debian bullseye/main i386 libscalapack-mpi-dev i386 2.1.0-4 [9732 B] Get: 211 http://deb.debian.org/debian bullseye/main i386 libmumps-headers-dev all 5.3.5-2 [34.1 kB] Get: 212 http://deb.debian.org/debian bullseye/main i386 libmumps-dev i386 5.3.5-2 [1563 kB] Get: 213 http://deb.debian.org/debian bullseye/main i386 libfftw3-quad3 i386 3.3.8-2 [1762 kB] Get: 214 http://deb.debian.org/debian bullseye/main i386 libfftw3-bin i386 3.3.8-2 [53.5 kB] Get: 215 http://deb.debian.org/debian bullseye/main i386 libfftw3-dev i386 3.3.8-2 [3170 kB] Get: 216 http://deb.debian.org/debian bullseye/main i386 libfftw3-mpi-dev i386 3.3.8-2 [70.9 kB] Get: 217 http://deb.debian.org/debian bullseye/main i386 libssl-dev i386 1.1.1k-1 [1841 kB] Get: 218 http://deb.debian.org/debian bullseye/main i386 opencl-c-headers all 3.0~2020.12.18-1 [41.8 kB] Get: 219 http://deb.debian.org/debian bullseye/main i386 opencl-clhpp-headers all 3.0~2.0.13-1 [41.5 kB] Get: 220 http://deb.debian.org/debian bullseye/main i386 ocl-icd-opencl-dev i386 2.2.14-2 [11.2 kB] Get: 221 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-fortran-102 i386 1.10.6+repack-2 [113 kB] Get: 222 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-hl-100 i386 1.10.6+repack-2 [93.2 kB] Get: 223 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-hl-fortran-100 i386 1.10.6+repack-2 [57.3 kB] Get: 224 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-cpp-103-1 i386 1.10.6+repack-2 [152 kB] Get: 225 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-hl-cpp-100 i386 1.10.6+repack-2 [37.8 kB] Get: 226 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 227 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB] Get: 228 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB] Get: 229 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-dev i386 1.10.6+repack-2 [2671 kB] Get: 230 http://deb.debian.org/debian bullseye/main i386 libhdf5-mpi-dev i386 1.10.6+repack-2 [32.1 kB] Get: 231 http://deb.debian.org/debian bullseye/main i386 libsuperlu-dist-dev i386 6.2.0+dfsg1-3 [248 kB] Get: 232 http://deb.debian.org/debian bullseye/main i386 libpetsc-real3.14-dev i386 3.14.5+dfsg1-4 [6069 kB] Get: 233 http://deb.debian.org/debian bullseye/main i386 libparpack2-dev i386 3.8.0-1 [112 kB] Get: 234 http://deb.debian.org/debian bullseye/main i386 libslepc-real3.14-dev i386 3.14.2+dfsg1-1 [4359 kB] Get: 235 http://deb.debian.org/debian bullseye/main i386 libdolfinx-real-dev i386 2019.2.0~git20210130.c14cb0a-4 [49.4 kB] Get: 236 http://deb.debian.org/debian bullseye/main i386 libxml2-dev i386 2.9.10+dfsg-6.6 [849 kB] Get: 237 http://deb.debian.org/debian bullseye/main i386 python3-cffi-backend i386 1.14.5-1 [89.1 kB] Get: 238 http://deb.debian.org/debian bullseye/main i386 python3-ply all 3.11-4 [65.5 kB] Get: 239 http://deb.debian.org/debian bullseye/main i386 python3-pycparser all 2.20-3 [74.5 kB] Get: 240 http://deb.debian.org/debian bullseye/main i386 python3-cffi all 1.14.5-1 [87.9 kB] Get: 241 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-3 [189 kB] Get: 242 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 243 http://deb.debian.org/debian bullseye/main i386 python3-mpmath all 1.2.1-1 [418 kB] Get: 244 http://deb.debian.org/debian bullseye/main i386 python3-sympy all 1.7.1-3 [4031 kB] Get: 245 http://deb.debian.org/debian bullseye/main i386 python3-fiat all 2019.2.0~git20210116.0439689-2 [70.6 kB] Get: 246 http://deb.debian.org/debian bullseye/main i386 python3-ufl all 2019.2.0~git20210211.d60cd09-1 [156 kB] Get: 247 http://deb.debian.org/debian bullseye/main i386 python3-basix i386 0.0.1~git20210122.4f10ef2-2 [94.3 kB] Get: 248 http://deb.debian.org/debian bullseye/main i386 python3-ffcx all 2019.2.0~git20210122.22ca4c0-2 [106 kB] Get: 249 http://deb.debian.org/debian bullseye/main i386 libdolfinx-dev all 2019.2.0~git20210130.c14cb0a-4 [149 kB] Fetched 170 MB in 35s (4797 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20541 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20962 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../001-libncurses6_6.2+20201114-2_i386.deb ... Unpacking libncurses6:i386 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:i386. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_i386.deb ... Unpacking libprocps8:i386 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_i386.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../006-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:i386. 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Unpacking libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../028-libldap-2.4-2_2.4.57+dfsg-2_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.57+dfsg-2) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../029-libnghttp2-14_1.43.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.43.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../030-libpsl5_0.21.0-1.2_i386.deb ... Unpacking libpsl5:i386 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../032-libssh2-1_1.9.0-2_i386.deb ... Unpacking libssh2-1:i386 (1.9.0-2) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../033-libcurl4_7.74.0-1.2_i386.deb ... Unpacking libcurl4:i386 (7.74.0-1.2) ... Selecting previously unselected package libjsoncpp24:i386. Preparing to unpack .../034-libjsoncpp24_1.9.4-4_i386.deb ... Unpacking libjsoncpp24:i386 (1.9.4-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../035-librhash0_1.4.1-2_i386.deb ... Unpacking librhash0:i386 (1.4.1-2) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../036-libuv1_1.40.0-1_i386.deb ... Unpacking libuv1:i386 (1.40.0-1) ... Selecting previously unselected package cmake. Preparing to unpack .../037-cmake_3.18.4-2_i386.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../038-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../039-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../040-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../041-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../042-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../043-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../044-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../045-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../051-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 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Setting up libboost-serialization1.74.0:i386 (1.74.0-9) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up libnuma1:i386 (2.0.12-1+b1) ... Setting up libmd0:i386 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:i386 (2.2.14-2) ... Setting up librhash0:i386 (1.4.1-2) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libnl-3-200:i386 (3.4.0-1+b1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up openmpi-common (4.1.0-8) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:i386 (10.2.1-6) ... Setting up libssh2-1:i386 (1.9.0-2) ... Setting up libcxsparse3:i386 (1:5.8.1+dfsg-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libboost-dev:i386 (1.74.0.3) ... Setting up libboost-math1.74-dev:i386 (1.74.0-9) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libboost-filesystem1.74-dev:i386 (1.74.0-9) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libboost-date-time1.74.0:i386 (1.74.0-9) ... Setting up libscotch-6.1:i386 (6.1.0-2) ... Setting up libfido2-1:i386 (1.6.0-2) ... Setting up libbsd0:i386 (0.11.3-1) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libboost-timer1.74.0:i386 (1.74.0-9) ... Setting up libicu-dev:i386 (67.1-6) ... Setting up libxml2:i386 (2.9.10+dfsg-6.6) ... Setting up libsuitesparseconfig5:i386 (1:5.8.1+dfsg-2) ... Setting up libboost-filesystem-dev:i386 (1.74.0.3) ... Setting up libprocps8:i386 (2:3.3.17-5) ... Setting up libblas-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.0.4-1) ... Setting up librbio2:i386 (1:5.8.1+dfsg-2) ... Setting up libboost-thread1.74.0:i386 (1.74.0-9) ... Setting up libevent-pthreads-2.1-7:i386 (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:i386 (2.1.12-stable-1) ... Setting up liblapack3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libcolamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:i386 (3.4.3-2+b1) ... Setting up libboost-chrono-dev:i386 (1.74.0.3) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libboost-math-dev:i386 (1.74.0.3) ... Setting up libedit2:i386 (3.1-20191231-2+b1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libaec-dev:i386 (1.0.4-1) ... Setting up libarpack2:i386 (3.8.0-1) ... Setting up libjpeg-dev:i386 (1:2.0.6-4) ... Setting up libsuperlu5:i386 (5.2.2+dfsg1-2) ... Setting up libevent-openssl-2.1-7:i386 (2.1.12-stable-1) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-2) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnuma-dev:i386 (2.0.12-1+b1) ... Setting up libnl-route-3-200:i386 (3.4.0-1+b1) ... Setting up libsliplu1:i386 (1:5.8.1+dfsg-2) ... Setting up libcamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libmongoose2:i386 (1:5.8.1+dfsg-2) ... Setting up libxml2-dev:i386 (2.9.10+dfsg-6.6) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up liblapack-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libeigen3-dev (3.3.9-2) ... Setting up gfortran-10 (10.2.1-6) ... Setting up libboost-timer1.74-dev:i386 (1.74.0-9) ... Setting up ocl-icd-opencl-dev:i386 (2.2.14-2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:i386 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:i386 (1.74.0-9) ... Setting up libnl-3-dev:i386 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-6) ... Setting up libklu1:i386 (1:5.8.1+dfsg-2) ... Setting up libccolamd2:i386 (1:5.8.1+dfsg-2) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:i386 (7.74.0-1.2) ... Setting up libx11-6:i386 (2:1.7.0-2) ... Setting up libsuperlu-dev:i386 (5.2.2+dfsg1-2) ... Setting up libbasix-dev:i386 (0.0.1~git20210122.4f10ef2-2) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up libcholmod3:i386 (1:5.8.1+dfsg-2) ... Setting up libboost-timer-dev:i386 (1.74.0.3) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspqr2:i386 (1:5.8.1+dfsg-2) ... Setting up libibverbs1:i386 (33.1+git20210317-1) ... Setting up libarpack2-dev:i386 (3.8.0-1) ... Setting up ibverbs-providers:i386 (33.1+git20210317-1) ... Setting up openssh-client (1:8.4p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:i386 (460.56-1) ... Setting up libboost-iostreams1.74-dev:i386 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:i386 (3.4.0-1+b1) ... Setting up libboost-date-time1.74-dev:i386 (1.74.0-9) ... Setting up libltdl-dev:i386 (2.4.6-15) ... Setting up libumfpack5:i386 (1:5.8.1+dfsg-2) ... Setting up libboost-serialization-dev:i386 (1.74.0.3) ... Setting up cmake (3.18.4-2) ... Setting up libboost-thread1.74-dev:i386 (1.74.0-9) ... Setting up libhwloc-dev:i386 (2.4.1+dfsg-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libboost-thread-dev:i386 (1.74.0.3) ... Setting up librdmacm1:i386 (33.1+git20210317-1) ... Setting up libsuitesparse-dev:i386 (1:5.8.1+dfsg-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libboost-iostreams-dev:i386 (1.74.0.3) ... Setting up libibverbs-dev:i386 (33.1+git20210317-1) ... Setting up libhwloc-plugins:i386 (2.4.1+dfsg-1) ... Setting up libpetsc3.14-dev-common (3.14.5+dfsg1-4) ... Setting up python3-mpmath (1.2.1-1) ... Setting up python3-cffi-backend:i386 (1.14.5-1) ... Setting up python3-basix (0.0.1~git20210122.4f10ef2-2) ... Setting up python3-pkg-resources (52.0.0-3) ... Setting up libfabric1 (1.11.0-2) ... Setting up python3-sympy (1.7.1-3) ... Setting up libpmix2:i386 (4.0.0-4) ... Setting up libopenmpi3:i386 (4.1.0-8) ... Setting up python3-ply (3.11-4) ... Setting up libboost-mpi1.74.0 (1.74.0-9) ... Setting up libptscotch-6.1:i386 (6.1.0-2) ... Setting up libfftw3-mpi3:i386 (3.3.8-2) ... Setting up python3-pycparser (2.20-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up libpmix-dev:i386 (4.0.0-4) ... Setting up openmpi-bin (4.1.0-8) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-103-1:i386 (1.10.6+repack-2) ... Setting up python3-fiat (2019.2.0~git20210116.0439689-2) ... Setting up libparpack2:i386 (3.8.0-1) ... Setting up libcombblas1.16.0:i386 (1.6.2-6) ... Setting up python3-ufl (2019.2.0~git20210211.d60cd09-1) ... Setting up python3-cffi (1.14.5-1) ... Setting up libfftw3-mpi-dev:i386 (3.3.8-2) ... Setting up mpi-default-bin (1.13) ... Setting up python3-ffcx (2019.2.0~git20210122.22ca4c0-2) ... Setting up libhdf5-openmpi-fortran-102:i386 (1.10.6+repack-2) ... Setting up libhdf5-openmpi-hl-100:i386 (1.10.6+repack-2) ... Setting up libsuperlu-dist6:i386 (6.2.0+dfsg1-3) ... Setting up libopenmpi-dev:i386 (4.1.0-8) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up libhdf5-openmpi-cpp-103-1:i386 (1.10.6+repack-2) ... Setting up libhdf5-openmpi-hl-cpp-100:i386 (1.10.6+repack-2) ... Setting up libhdf5-openmpi-hl-fortran-100:i386 (1.10.6+repack-2) ... Setting up libscalapack-openmpi2.1:i386 (2.1.0-4) ... Setting up libhypre:i386 (2.18.2-1) ... Setting up libsuperlu-dist-dev:i386 (6.2.0+dfsg1-3) ... Setting up libscalapack-openmpi-dev:i386 (2.1.0-4) ... Setting up libmumps-5.3:i386 (5.3.5-2) ... Setting up mpi-default-dev (1.13) ... Setting up libscalapack-mpi-dev:i386 (2.1.0-4) ... Setting up libhdf5-openmpi-dev (1.10.6+repack-2) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:i386 (5.3.5-2) ... Setting up libscotch-dev (6.1.0-2) ... Setting up libboost-mpi1.74-dev (1.74.0-9) ... Setting up libparpack2-dev:i386 (3.8.0-1) ... Setting up libpetsc-real3.14:i386 (3.14.5+dfsg1-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/libpetsc_real.so.3.14.5 to provide /usr/lib/i386-linux-gnu/libpetsc.so.3.14 (libpetsc.so.3.14) in auto mode Setting up libhypre-dev:i386 (2.18.2-1) ... Setting up libptscotch-dev (6.1.0-2) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libhdf5-mpi-dev (1.10.6+repack-2) ... Setting up libslepc-real3.14 (3.14.2+dfsg1-1) ... update-alternatives: using /usr/lib/i386-linux-gnu/libslepc_real.so.3.14.2 to provide /usr/lib/i386-linux-gnu/libslepc.so.3.14 (libslepc.so.3.14) in auto mode Setting up libdolfinx-real2019.2:i386 (2019.2.0~git20210130.c14cb0a-4) ... Setting up libpetsc-real3.14-dev:i386 (3.14.5+dfsg1-4) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/libpetsc_real.so.3.14.5 to provide /usr/lib/i386-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real to provide /usr/lib/petscdir/3.14 (petsc3.14) in auto mode Setting up libslepc-real3.14-dev (3.14.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/libslepc_real.so.3.14.2 to provide /usr/lib/i386-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real to provide /usr/lib/slepcdir/3.14 (slepc3.14) in auto mode Setting up libdolfinx-real-dev:i386 (2019.2.0~git20210130.c14cb0a-4) ... Setting up libdolfinx-dev (2019.2.0~git20210130.c14cb0a-4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (899 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54633 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package I: Running cd /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.0~git20210119.80e82ac-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_configure -O--buildsystem=cmake -O--sourcedirectory=src cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu ../src -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /usr/share/dolfinx/cmake/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /usr/share/dolfinx/cmake/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:13 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Found Boost 1.74.0 at /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/i386-linux-gnu/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' [ 11%] Generating Poisson.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Poisson.ufl [ 22%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Elasticity.ufl cd "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= Dependee "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" is newer than depender "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/depend.internal". 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Scanning dependencies of target dolfinx-scaling-test make[3]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' [ 33%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -std=c++17 -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/mesh.cpp" [ 44%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem 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-DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/Poisson.c" [ 88%] Building CXX object 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CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/poisson_problem.cpp" [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -pthread CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -o dolfinx-scaling-test -Wl,-rpath,/usr/lib/i386-linux-gnu/openmpi/lib:/usr/lib/i386-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib: /usr/lib/i386-linux-gnu/libdolfinx_real.so.2019.2.9.99 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/i386-linux-gnu/libbasix.so /usr/lib/i386-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.14/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu ==== elasticity weak scaling (8 processes with ndofs=10000) ==== UnitCube (29x26x32) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: weak Num processes: 8 Num cells 144768 Total degrees of freedom: 80190 Average degrees of freedom per process: 10023 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.39187 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 8 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 8 MPI processes type: bjacobi number of blocks = 8 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.533 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=510, cols=510, bs=6 package used to perform factorization: petsc total: nonzeros=218268, allocated nonzeros=218268 using I-node routines: found 139 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=510, cols=510, bs=6 total: nonzeros=142380, allocated nonzeros=142380 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 170 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=510, cols=510, bs=6 total: nonzeros=142380, allocated nonzeros=142380 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 170 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.171938, max = 1.89132 eigenvalues estimate via cg min 0.0257638, max 1.71938 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=6402, cols=6402, bs=6 total: nonzeros=1197036, allocated nonzeros=1197036 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 176 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.261831, max = 2.88014 eigenvalues estimate via cg min 0.050622, max 2.61831 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3185 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3185 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 1.025145 1.025145 Build dofmap data | 2 0.057175 0.114351 Build sparsity | 1 0.072496 0.072496 Compute SCOTCH graph re-ordering | 2 0.001391 0.002782 Compute dof reordering map | 2 0.015776 0.031552 Compute entities of dim = 1 | 1 0.359270 0.359270 Compute entities of dim = 2 | 1 0.271340 0.271340 Compute graph partition (SCOTCH) | 1 0.797697 0.797697 Compute local part of mesh dual graph | 1 0.049948 0.049948 Compute local-to-local map | 1 0.002504 0.002504 Compute non-local part of mesh dual graph | 1 0.028313 0.028313 Compute-local-to-global links for global/local adjacency list | 1 0.000600 0.000600 Distribute in graph creation AdjacencyList | 1 0.013314 0.013314 Extract partition boundaries from SCOTCH graph | 1 0.002594 0.002594 Fetch float data from remote processes | 1 0.007789 0.007789 Get SCOTCH graph data | 1 0.000008 0.000008 Init dofmap from element dofmap | 2 0.011202 0.022403 PETSc Krylov solver | 1 3.471672 3.471672 SCOTCH: call SCOTCH_dgraphBuild | 1 0.003940 0.003940 SCOTCH: call SCOTCH_dgraphHalo | 1 0.001336 0.001336 SCOTCH: call SCOTCH_dgraphPart | 1 0.783221 0.783221 SCOTCH: call SCOTCH_graphBuild | 2 0.000009 0.000018 SCOTCH: call SCOTCH_graphOrder | 2 0.001258 0.002517 SparsityPattern::assemble | 1 0.054807 0.054807 TOPOLOGY: Create sets | 1 0.029891 0.029891 ZZZ Assemble matrix | 1 0.505127 0.505127 ZZZ Assemble vector | 1 0.021472 0.021472 ZZZ Create Mesh | 1 1.028681 1.028681 ZZZ Create RHS function | 1 0.104373 0.104373 ZZZ Create boundary conditions | 1 0.072196 0.072196 ZZZ Create forms | 1 0.000106 0.000106 ZZZ Create mesh entity permutations | 1 0.661274 0.661274 ZZZ Create near-nullspace | 1 0.102068 0.102068 ZZZ FunctionSpace | 1 0.069580 0.069580 ZZZ Solve | 1 3.481540 3.481540 *** Number of Krylov iterations: 16 *** Solution norm: 6.02584e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 8 processors, by pbuilder2 Sat May 22 16:36:43 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 6.239e+00 1.000 6.238e+00 Objects: 3.780e+02 1.005 3.762e+02 Flop: 2.637e+08 1.262 2.222e+08 1.778e+09 Flop/sec: 4.227e+07 1.262 3.562e+07 2.850e+08 MPI Messages: 2.386e+03 1.772 1.808e+03 1.446e+04 MPI Message Lengths: 1.366e+07 1.845 5.396e+03 7.802e+07 MPI Reductions: 6.490e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 6.2383e+00 100.0% 1.7777e+09 100.0% 1.446e+04 100.0% 5.396e+03 100.0% 6.420e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 1.1184e+00 3.9 0.00e+00 0.0 8.2e+02 4.0e+00 9.5e+01 9 0 6 0 15 9 0 6 0 15 0 BuildTwoSidedF 76 1.0 1.1113e+00 3.9 0.00e+00 0.0 4.0e+02 5.7e+04 7.6e+01 9 0 3 29 12 9 0 3 29 12 0 MatMult 192 1.0 6.1957e-01 1.1 1.18e+08 1.1 7.2e+03 3.7e+03 0.0e+00 10 51 50 35 0 10 51 50 35 0 1473 MatMultAdd 34 1.0 1.5227e-01 2.8 8.72e+06 1.1 7.5e+02 1.2e+03 0.0e+00 2 4 5 1 0 2 4 5 1 0 438 MatMultTranspose 34 1.0 6.5198e-02 1.4 8.73e+06 1.1 7.5e+02 1.2e+03 0.0e+00 1 4 5 1 0 1 4 5 1 0 1025 MatSolve 17 0.0 8.2066e-03 0.0 7.41e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 903 MatLUFactorSym 1 1.0 1.1603e-02613.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 6.6590e-0225494.0 6.07e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 912 MatScale 6 1.0 3.1327e-03 1.7 6.19e+05 1.1 7.6e+01 1.0e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 1516 MatResidual 34 1.0 1.0339e-01 1.0 2.04e+07 1.2 1.3e+03 3.5e+03 0.0e+00 2 9 9 6 0 2 9 9 6 0 1518 MatAssemblyBegin 41 1.0 1.1220e+00 3.6 0.00e+00 0.0 4.0e+02 5.7e+04 1.6e+01 10 0 3 29 2 10 0 3 29 2 0 MatAssemblyEnd 41 1.0 2.0751e-01 1.2 1.95e+05 2.3 9.2e+02 3.6e+02 7.0e+01 3 0 6 0 11 3 0 6 0 11 5 MatGetRowIJ 1 0.0 1.9821e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 4.5971e-02 1.0 0.00e+00 0.0 4.9e+01 3.3e+04 3.0e+01 1 0 0 2 5 1 0 0 2 5 0 MatGetOrdering 1 0.0 4.7420e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 3.1559e-03 1.5 0.00e+00 0.0 6.1e+02 7.6e+02 9.0e+00 0 0 4 1 1 0 0 4 1 1 0 MatZeroEntries 2 1.0 6.1162e-04 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 2.4232e-03 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 1.8262e-02 1.3 6.63e+04 1.1 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 27 MatTranspose 4 1.0 9.7773e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 1.8743e-01 1.2 0.00e+00 0.0 3.9e+02 6.5e+03 2.0e+01 3 0 3 3 3 3 0 3 3 3 0 MatMatMultNum 2 1.0 3.3674e-02 1.0 7.13e+06 1.2 7.6e+01 2.1e+04 2.0e+00 1 3 1 2 0 1 3 1 2 0 1611 MatPtAPSymbolic 2 1.0 7.5120e-01 1.0 0.00e+00 0.0 4.7e+02 3.2e+04 1.4e+01 12 0 3 19 2 12 0 3 19 2 0 MatPtAPNumeric 2 1.0 9.9612e-01 1.0 6.96e+07 1.3 3.6e+02 3.7e+04 1.2e+01 16 28 2 17 2 16 28 2 17 2 492 MatTrnMatMultSym 1 1.0 1.3072e-01 1.0 0.00e+00 0.0 2.5e+02 2.0e+04 1.3e+01 2 0 2 6 2 2 0 2 6 2 0 MatGetLocalMat 7 1.0 1.0748e-02 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 2.0354e-02 1.2 0.00e+00 0.0 5.3e+02 3.0e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecDot 36 1.0 3.4123e-03 1.6 7.48e+05 1.1 0.0e+00 0.0e+00 3.6e+01 0 0 0 0 6 0 0 0 0 6 1692 VecMDot 20 1.0 1.5234e-02 3.9 1.24e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 625 VecTDot 74 1.0 1.9507e-02 5.0 1.14e+06 1.1 0.0e+00 0.0e+00 7.4e+01 0 0 0 0 11 0 0 0 0 12 449 VecNorm 68 1.0 2.4946e-02 5.5 9.96e+05 1.1 0.0e+00 0.0e+00 6.8e+01 0 0 0 0 10 0 0 0 0 11 307 VecScale 28 1.0 4.6610e-04 2.1 1.87e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3076 VecCopy 116 1.0 2.8656e-03 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 179 1.0 1.1498e-03 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 83 1.0 5.2700e-03 2.7 1.33e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1938 VecAYPX 237 1.0 1.2738e-02 3.3 2.05e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1236 VecAXPBYCZ 68 1.0 4.6053e-03 2.8 1.92e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3196 VecMAXPY 22 1.0 4.2837e-03 6.1 1.47e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2628 VecAssemblyBegin 61 1.0 2.6110e-02 7.8 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 61 1.0 2.1166e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 180 1.0 1.3697e-02 3.2 1.02e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 569 VecScatterBegin 327 1.0 1.8270e-02 2.2 0.00e+00 0.0 1.1e+04 2.8e+03 0.0e+00 0 0 79 41 0 0 0 79 41 0 0 VecScatterEnd 327 1.0 5.8344e-01 6.2 3.64e+04 4.5 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 VecSetRandom 2 1.0 4.1053e-03 4.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 6.4341e-03 3.4 5.60e+05 1.1 0.0e+00 0.0e+00 2.8e+01 0 0 0 0 4 0 0 0 0 4 668 SFSetGraph 19 1.0 1.0094e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 8.7057e-03 1.5 0.00e+00 0.0 1.2e+03 3.5e+02 1.9e+01 0 0 9 1 3 0 0 9 1 3 0 SFBcastOpBegin 303 1.0 1.6254e-02 2.2 0.00e+00 0.0 1.1e+04 2.9e+03 0.0e+00 0 0 77 41 0 0 0 77 41 0 0 SFBcastOpEnd 303 1.0 5.3885e-01 6.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 SFReduceBegin 35 1.0 1.1578e-03 2.5 0.00e+00 0.0 7.8e+02 1.2e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 35 1.0 4.5570e-02 6.0 3.64e+04 4.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3 SFPack 338 1.0 8.3569e-03 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 338 1.0 6.5012e-04 1.7 3.64e+04 4.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 180 KSPSetUp 7 1.0 7.2372e-02 1.0 1.34e+07 1.1 7.6e+02 3.5e+03 7.2e+01 1 6 5 3 11 1 6 5 3 11 1423 KSPSolve 1 1.0 3.4674e+00 1.0 2.61e+08 1.3 1.4e+04 5.2e+03 5.5e+02 56 99 97 93 85 56 99 97 93 86 505 KSPGMRESOrthog 20 1.0 1.5923e-02 3.4 2.49e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 1196 PCGAMGGraph_AGG 2 1.0 3.9743e-01 1.0 6.53e+05 1.1 3.8e+02 4.1e+02 3.8e+01 6 0 3 0 6 6 0 3 0 6 13 PCGAMGCoarse_AGG 2 1.0 1.4202e-01 1.0 0.00e+00 0.0 1.1e+03 5.7e+03 3.0e+01 2 0 7 8 5 2 0 7 8 5 0 PCGAMGProl_AGG 2 1.0 8.1475e-02 1.0 0.00e+00 0.0 2.5e+03 1.5e+03 1.9e+02 1 0 17 5 29 1 0 17 5 29 0 PCGAMGPOpt_AGG 2 1.0 2.6114e-01 1.0 2.26e+07 1.1 1.2e+03 5.5e+03 8.2e+01 4 10 8 9 13 4 10 8 9 13 670 GAMG: createProl 2 1.0 8.8410e-01 1.0 2.33e+07 1.1 5.2e+03 3.2e+03 3.4e+02 14 10 36 21 52 14 10 36 21 53 203 Graph 4 1.0 3.9697e-01 1.0 6.53e+05 1.1 3.8e+02 4.1e+02 3.8e+01 6 0 3 0 6 6 0 3 0 6 13 MIS/Agg 2 1.0 3.2135e-03 1.5 0.00e+00 0.0 6.1e+02 7.6e+02 9.0e+00 0 0 4 1 1 0 0 4 1 1 0 SA: col data 2 1.0 3.6542e-02 1.0 0.00e+00 0.0 2.3e+03 1.2e+03 1.7e+02 1 0 16 4 26 1 0 16 4 26 0 SA: frmProl0 2 1.0 4.0721e-02 1.0 0.00e+00 0.0 2.0e+02 4.6e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 1.7584e-01 1.0 7.69e+06 1.1 4.7e+02 8.8e+03 2.8e+01 3 3 3 5 4 3 3 3 5 4 334 GAMG: partLevel 2 1.0 1.7828e+00 1.0 6.96e+07 1.3 9.3e+02 3.2e+04 8.1e+01 29 28 6 38 12 29 28 6 38 13 275 repartition 1 1.0 5.1151e-02 1.1 0.00e+00 0.0 9.4e+01 1.8e+04 5.5e+01 1 0 1 2 8 1 0 1 2 9 0 Invert-Sort 1 1.0 1.9423e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 1.8693e-02 1.0 0.00e+00 0.0 3.5e+01 4.6e+04 1.6e+01 0 0 0 2 2 0 0 0 2 2 0 Move P 1 1.0 2.8887e-02 1.0 0.00e+00 0.0 1.4e+01 4.3e+02 1.7e+01 0 0 0 0 3 0 0 0 0 3 0 PCSetUp 2 1.0 2.8223e+00 1.0 1.48e+08 1.6 6.9e+03 7.2e+03 5.0e+02 44 47 47 63 77 44 47 47 63 78 295 PCSetUpOnBlocks 17 1.0 7.8881e-02419.0 6.07e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 770 PCApply 39 1.0 6.4364e-01 1.0 1.58e+08 1.6 6.7e+03 3.0e+03 4.0e+00 10 48 46 26 1 10 48 46 26 1 1331 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 24271336 0. Matrix Coarsen 2 2 728 0. Matrix Null Space 1 1 428 0. Index Set 55 55 112868 0. IS L to G Mapping 6 6 90412 0. Vec Scatter 17 17 7888 0. Vector 185 185 4139056 0. Star Forest Graph 19 19 13072 0. Krylov Solver 9 9 66712 0. Preconditioner 9 9 5592 0. Viewer 3 2 1064 0. PetscRandom 4 4 1560 0. ======================================================================================================================== Average time to get PetscTime(): 8.321e-07 Average time for MPI_Barrier(): 7.1594e-06 Average time for zero size MPI_Send(): 2.67613e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-i686-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/i386-linux-gnu -L/lib/i386-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak ==== elasticity strong scaling (8 processes with ndofs=80000) ==== UnitCube (29x26x32) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: strong Num processes: 8 Num cells 144768 Total degrees of freedom: 80190 Average degrees of freedom per process: 10023 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.40135 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 8 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 8 MPI processes type: bjacobi number of blocks = 8 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.35404 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=564, cols=564, bs=6 package used to perform factorization: petsc total: nonzeros=235440, allocated nonzeros=235440 using I-node routines: found 166 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=564, cols=564, bs=6 total: nonzeros=173880, allocated nonzeros=173880 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 188 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=564, cols=564, bs=6 total: nonzeros=173880, allocated nonzeros=173880 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 188 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.174684, max = 1.92152 eigenvalues estimate via cg min 0.027594, max 1.74684 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=6432, cols=6432, bs=6 total: nonzeros=1197936, allocated nonzeros=1197936 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 184 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.261638, max = 2.87802 eigenvalues estimate via cg min 0.0506535, max 2.61638 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3148 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3148 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 0.904613 0.904613 Build dofmap data | 2 0.054146 0.108292 Build sparsity | 1 0.078400 0.078400 Compute SCOTCH graph re-ordering | 2 0.001389 0.002778 Compute dof reordering map | 2 0.015755 0.031509 Compute entities of dim = 1 | 1 0.344262 0.344262 Compute entities of dim = 2 | 1 0.272763 0.272763 Compute graph partition (SCOTCH) | 1 0.688995 0.688995 Compute local part of mesh dual graph | 1 0.055357 0.055357 Compute local-to-local map | 1 0.001990 0.001990 Compute non-local part of mesh dual graph | 1 0.021560 0.021560 Compute-local-to-global links for global/local adjacency list | 1 0.000501 0.000501 Distribute in graph creation AdjacencyList | 1 0.011059 0.011059 Extract partition boundaries from SCOTCH graph | 1 0.001894 0.001894 Fetch float data from remote processes | 1 0.010753 0.010753 Get SCOTCH graph data | 1 0.000007 0.000007 Init dofmap from element dofmap | 2 0.010559 0.021118 PETSc Krylov solver | 1 3.532817 3.532817 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000973 0.000973 SCOTCH: call SCOTCH_dgraphHalo | 1 0.001264 0.001264 SCOTCH: call SCOTCH_dgraphPart | 1 0.681864 0.681864 SCOTCH: call SCOTCH_graphBuild | 2 0.000008 0.000016 SCOTCH: call SCOTCH_graphOrder | 2 0.001266 0.002531 SparsityPattern::assemble | 1 0.036188 0.036188 TOPOLOGY: Create sets | 1 0.029183 0.029183 ZZZ Assemble matrix | 1 0.455508 0.455508 ZZZ Assemble vector | 1 0.023273 0.023273 ZZZ Create Mesh | 1 0.905409 0.905409 ZZZ Create RHS function | 1 0.099196 0.099196 ZZZ Create boundary conditions | 1 0.060480 0.060480 ZZZ Create forms | 1 0.000100 0.000100 ZZZ Create mesh entity permutations | 1 0.647211 0.647211 ZZZ Create near-nullspace | 1 0.089856 0.089856 ZZZ FunctionSpace | 1 0.064495 0.064495 ZZZ Solve | 1 3.533744 3.533744 *** Number of Krylov iterations: 16 *** Solution norm: 6.02584e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 8 processors, by pbuilder2 Sat May 22 16:36:53 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 6.013e+00 1.002 6.011e+00 Objects: 3.780e+02 1.005 3.762e+02 Flop: 2.691e+08 1.338 2.251e+08 1.801e+09 Flop/sec: 4.476e+07 1.337 3.745e+07 2.996e+08 MPI Messages: 2.432e+03 2.080 1.800e+03 1.440e+04 MPI Message Lengths: 1.368e+07 1.924 5.563e+03 8.012e+07 MPI Reductions: 6.480e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 6.0109e+00 100.0% 1.8008e+09 100.0% 1.440e+04 100.0% 5.563e+03 100.0% 6.410e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 1.3472e+0075.2 0.00e+00 0.0 8.3e+02 4.0e+00 9.5e+01 12 0 6 0 15 12 0 6 0 15 0 BuildTwoSidedF 76 1.0 1.3424e+0074.4 0.00e+00 0.0 4.1e+02 5.8e+04 7.6e+01 12 0 3 29 12 12 0 3 29 12 0 MatMult 192 1.0 5.9512e-01 1.1 1.22e+08 1.2 7.2e+03 3.7e+03 0.0e+00 9 51 50 34 0 9 51 50 34 0 1534 MatMultAdd 34 1.0 1.3925e-01 2.9 8.75e+06 1.1 7.3e+02 1.2e+03 0.0e+00 2 4 5 1 0 2 4 5 1 0 483 MatMultTranspose 34 1.0 5.6940e-02 1.5 8.76e+06 1.1 7.3e+02 1.2e+03 0.0e+00 1 4 5 1 0 1 4 5 1 0 1183 MatSolve 17 0.0 1.0481e-02 0.0 8.00e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 763 MatLUFactorSym 1 1.0 1.7982e-02997.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 5.8499e-0218172.9 6.00e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1025 MatScale 6 1.0 3.1055e-03 1.6 6.20e+05 1.1 7.6e+01 1.0e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 1540 MatResidual 34 1.0 1.0262e-01 1.1 2.11e+07 1.2 1.3e+03 3.5e+03 0.0e+00 2 9 9 6 0 2 9 9 6 0 1529 MatAssemblyBegin 41 1.0 1.3509e+0014.7 0.00e+00 0.0 4.1e+02 5.8e+04 1.6e+01 13 0 3 29 2 13 0 3 29 2 0 MatAssemblyEnd 41 1.0 2.3268e-01 1.1 1.94e+05 3.1 9.3e+02 3.6e+02 7.0e+01 4 0 6 0 11 4 0 6 0 11 4 MatGetRowIJ 1 0.0 2.3671e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 5.2002e-02 1.0 0.00e+00 0.0 4.9e+01 4.1e+04 3.0e+01 1 0 0 2 5 1 0 0 2 5 0 MatGetOrdering 1 0.0 4.8316e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 4.9546e-03 2.0 0.00e+00 0.0 5.7e+02 7.0e+02 8.0e+00 0 0 4 1 1 0 0 4 1 1 0 MatZeroEntries 2 1.0 6.2267e-04 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 3.2938e-03 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 1.8880e-02 1.2 6.67e+04 1.1 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 27 MatTranspose 4 1.0 1.0479e-02 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 1.7150e-01 1.2 0.00e+00 0.0 3.9e+02 6.5e+03 2.0e+01 3 0 3 3 3 3 0 3 3 3 0 MatMatMultNum 2 1.0 3.3039e-02 1.0 7.32e+06 1.2 7.6e+01 2.1e+04 2.0e+00 1 3 1 2 0 1 3 1 2 0 1642 MatPtAPSymbolic 2 1.0 7.7232e-01 1.0 0.00e+00 0.0 4.7e+02 3.3e+04 1.4e+01 13 0 3 20 2 13 0 3 20 2 0 MatPtAPNumeric 2 1.0 1.0583e+00 1.0 7.15e+07 1.3 3.6e+02 3.9e+04 1.2e+01 18 28 2 18 2 18 28 2 18 2 484 MatTrnMatMultSym 1 1.0 1.4078e-01 1.0 0.00e+00 0.0 2.5e+02 2.0e+04 1.3e+01 2 0 2 6 2 2 0 2 6 2 0 MatGetLocalMat 7 1.0 1.3198e-02 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 3.2649e-02 1.5 0.00e+00 0.0 5.3e+02 3.1e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecDot 36 1.0 2.1632e-03 1.3 7.41e+05 1.1 0.0e+00 0.0e+00 3.6e+01 0 0 0 0 6 0 0 0 0 6 2669 VecMDot 20 1.0 2.5000e-02 6.5 1.23e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 381 VecTDot 74 1.0 1.9086e-02 6.6 1.12e+06 1.1 0.0e+00 0.0e+00 7.4e+01 0 0 0 0 11 0 0 0 0 12 459 VecNorm 68 1.0 7.8692e-02 8.8 9.82e+05 1.1 0.0e+00 0.0e+00 6.8e+01 0 0 0 0 10 0 0 0 0 11 97 VecScale 28 1.0 4.9651e-04 2.6 1.84e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2888 VecCopy 116 1.0 2.7353e-03 2.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 179 1.0 1.2450e-03 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 83 1.0 5.2604e-03 3.0 1.31e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1942 VecAYPX 237 1.0 1.0401e-02 2.8 2.03e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1514 VecAXPBYCZ 68 1.0 4.3676e-03 2.8 1.90e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3372 VecMAXPY 22 1.0 4.1263e-03 6.3 1.45e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2729 VecAssemblyBegin 61 1.0 2.4937e-0215.5 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 61 1.0 2.2389e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 180 1.0 1.2422e-02 3.0 1.01e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 628 VecScatterBegin 327 1.0 1.8897e-02 2.7 0.00e+00 0.0 1.1e+04 2.8e+03 0.0e+00 0 0 79 40 0 0 0 79 40 0 0 VecScatterEnd 327 1.0 5.2797e-01 7.8 3.78e+04 5.8 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 VecSetRandom 2 1.0 3.1109e-03 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 1.0337e-02 2.0 5.53e+05 1.1 0.0e+00 0.0e+00 2.8e+01 0 0 0 0 4 0 0 0 0 4 416 SFSetGraph 19 1.0 9.3249e-05 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 6.2452e-03 2.2 0.00e+00 0.0 1.2e+03 3.5e+02 1.9e+01 0 0 9 1 3 0 0 9 1 3 0 SFBcastOpBegin 302 1.0 1.6804e-02 2.8 0.00e+00 0.0 1.1e+04 2.9e+03 0.0e+00 0 0 77 40 0 0 0 77 40 0 0 SFBcastOpEnd 302 1.0 4.7961e-01 7.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 SFReduceBegin 35 1.0 8.9088e-04 2.0 0.00e+00 0.0 7.6e+02 1.2e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 35 1.0 4.9734e-0223.2 3.78e+04 5.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2 SFPack 337 1.0 8.1014e-03 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 337 1.0 7.4349e-04 2.0 3.78e+04 5.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 159 KSPSetUp 7 1.0 6.8794e-02 1.0 1.38e+07 1.2 7.6e+02 3.5e+03 7.2e+01 1 6 5 3 11 1 6 5 3 11 1497 KSPSolve 1 1.0 3.5275e+00 1.0 2.66e+08 1.3 1.4e+04 5.3e+03 5.5e+02 59 99 97 93 85 59 99 97 93 85 503 KSPGMRESOrthog 20 1.0 2.8358e-02 3.8 2.46e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 672 PCGAMGGraph_AGG 2 1.0 4.0144e-01 1.0 6.74e+05 1.2 3.8e+02 4.1e+02 3.8e+01 7 0 3 0 6 7 0 3 0 6 13 PCGAMGCoarse_AGG 2 1.0 1.5421e-01 1.0 0.00e+00 0.0 1.0e+03 5.9e+03 2.9e+01 3 0 7 7 4 3 0 7 7 5 0 PCGAMGProl_AGG 2 1.0 7.9106e-02 1.0 0.00e+00 0.0 2.5e+03 1.4e+03 1.9e+02 1 0 18 5 29 1 0 18 5 29 0 PCGAMGPOpt_AGG 2 1.0 2.6161e-01 1.0 2.33e+07 1.2 1.2e+03 5.6e+03 8.2e+01 4 10 9 9 13 4 10 9 9 13 669 GAMG: createProl 2 1.0 8.9516e-01 1.0 2.40e+07 1.2 5.2e+03 3.2e+03 3.4e+02 15 10 36 21 52 15 10 36 21 53 201 Graph 4 1.0 4.0092e-01 1.0 6.74e+05 1.2 3.8e+02 4.1e+02 3.8e+01 7 0 3 0 6 7 0 3 0 6 13 MIS/Agg 2 1.0 5.0071e-03 2.0 0.00e+00 0.0 5.7e+02 7.0e+02 8.0e+00 0 0 4 1 1 0 0 4 1 1 0 SA: col data 2 1.0 4.1249e-02 1.0 0.00e+00 0.0 2.3e+03 1.2e+03 1.7e+02 1 0 16 3 26 1 0 16 3 26 0 SA: frmProl0 2 1.0 3.3898e-02 1.0 0.00e+00 0.0 2.1e+02 4.3e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 1.5931e-01 1.0 7.90e+06 1.2 4.7e+02 8.8e+03 2.8e+01 3 3 3 5 4 3 3 3 5 4 369 GAMG: partLevel 2 1.0 1.8789e+00 1.0 7.15e+07 1.3 9.3e+02 3.5e+04 8.1e+01 31 28 6 40 12 31 28 6 40 13 273 repartition 1 1.0 5.7968e-02 1.1 0.00e+00 0.0 9.4e+01 2.2e+04 5.5e+01 1 0 1 3 8 1 0 1 3 9 0 Invert-Sort 1 1.0 1.9664e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 2.3906e-02 1.0 0.00e+00 0.0 3.5e+01 5.7e+04 1.6e+01 0 0 0 2 2 0 0 0 2 2 0 Move P 1 1.0 2.9556e-02 1.0 0.00e+00 0.0 1.4e+01 4.7e+02 1.7e+01 0 0 0 0 3 0 0 0 0 3 0 PCSetUp 2 1.0 2.9221e+00 1.0 1.53e+08 1.7 6.8e+03 7.5e+03 5.0e+02 47 47 47 64 77 47 47 47 64 78 293 PCSetUpOnBlocks 17 1.0 7.7231e-02372.7 6.00e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 777 PCApply 39 1.0 6.0310e-01 1.1 1.58e+08 1.7 6.6e+03 3.0e+03 4.0e+00 10 48 46 25 1 10 48 46 25 1 1422 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 25302468 0. Matrix Coarsen 2 2 728 0. Matrix Null Space 1 1 428 0. Index Set 55 55 113812 0. IS L to G Mapping 6 6 89388 0. Vec Scatter 17 17 7888 0. Vector 185 185 4103024 0. Star Forest Graph 19 19 13072 0. Krylov Solver 9 9 66712 0. Preconditioner 9 9 5592 0. Viewer 3 2 1064 0. PetscRandom 4 4 1560 0. ======================================================================================================================== Average time to get PetscTime(): 8.234e-07 Average time for MPI_Barrier(): 6.3524e-06 Average time for zero size MPI_Send(): 2.317e-06 #PETSc Option Table entries: --ndofs 80000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-i686-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/i386-linux-gnu -L/lib/i386-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 80000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 80000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong ==== poisson weak scaling (8 processes with ndofs=10000) ==== UnitCube (42x42x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: weak Num processes: 8 Num cells 444528 Total degrees of freedom: 79507 Average degrees of freedom per process: 9938 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=79507, cols=79507 total: nonzeros=1148743, allocated nonzeros=1148743 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 1.749610 1.749610 Build dofmap data | 2 0.177293 0.354587 Build sparsity | 1 0.361745 0.361745 Compute SCOTCH graph re-ordering | 2 0.006029 0.012059 Compute connectivity 2-3 | 1 0.003593 0.003593 Compute dof reordering map | 2 0.048374 0.096749 Compute entities of dim = 1 | 1 0.940868 0.940868 Compute entities of dim = 2 | 1 0.768782 0.768782 Compute graph partition (SCOTCH) | 1 0.996471 0.996471 Compute local part of mesh dual graph | 1 0.159243 0.159243 Compute local-to-local map | 1 0.006258 0.006258 Compute non-local part of mesh dual graph | 1 0.145774 0.145774 Compute-local-to-global links for global/local adjacency list | 1 0.001548 0.001548 Distribute in graph creation AdjacencyList | 1 0.037244 0.037244 Extract partition boundaries from SCOTCH graph | 1 0.005542 0.005542 Fetch float data from remote processes | 1 0.037691 0.037691 Get SCOTCH graph data | 1 0.000009 0.000009 Init dofmap from element dofmap | 2 0.030927 0.061853 PETSc Krylov solver | 1 1.384961 1.384961 SCOTCH: call SCOTCH_dgraphBuild | 1 0.003600 0.003600 SCOTCH: call SCOTCH_dgraphHalo | 1 0.004194 0.004194 SCOTCH: call SCOTCH_dgraphPart | 1 0.976771 0.976771 SCOTCH: call SCOTCH_graphBuild | 2 0.000019 0.000038 SCOTCH: call SCOTCH_graphOrder | 2 0.005627 0.011253 SparsityPattern::assemble | 1 0.096920 0.096920 TOPOLOGY: Create sets | 1 0.092691 0.092691 ZZZ Assemble | 1 1.379899 1.379899 ZZZ Assemble matrix | 1 0.204030 0.204030 ZZZ Assemble vector | 1 0.053700 0.053700 ZZZ Create Mesh | 1 1.750584 1.750584 ZZZ Create mesh entity permutations | 1 1.798509 1.798509 ZZZ FunctionSpace | 1 0.205751 0.205751 ZZZ Solve | 1 1.385920 1.385920 *** Number of Krylov iterations: 7 *** Solution norm: 14540.9 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 8 processors, by pbuilder2 Sat May 22 16:37:03 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 6.530e+00 1.000 6.530e+00 Objects: 3.800e+01 1.000 3.800e+01 Flop: 3.578e+06 1.044 3.515e+06 2.812e+07 Flop/sec: 5.479e+05 1.044 5.382e+05 4.306e+06 MPI Messages: 1.260e+02 2.000 8.325e+01 6.660e+02 MPI Message Lengths: 5.750e+05 1.389 5.579e+03 3.716e+06 MPI Reductions: 6.600e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 6.5302e+00 100.0% 2.8119e+07 100.0% 6.660e+02 100.0% 5.579e+03 100.0% 5.900e+01 89.4% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 1.1335e-01734.7 0.00e+00 0.0 1.5e+02 4.0e+00 4.0e+00 1 0 22 0 6 1 0 22 0 7 0 BuildTwoSidedF 1 1.0 1.1213e-011235.4 0.00e+00 0.0 7.2e+01 1.5e+04 1.0e+00 1 0 11 29 2 1 0 11 29 2 0 MatMult 7 1.0 1.3006e-02 1.0 1.97e+06 1.0 2.7e+02 3.7e+03 0.0e+00 0 55 40 26 0 0 55 40 26 0 1194 MatConvert 1 1.0 3.2059e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 6 0 0 0 0 7 0 MatAssemblyBegin 2 1.0 1.1579e-01 8.0 0.00e+00 0.0 7.2e+01 1.5e+04 1.0e+00 1 0 11 29 2 1 0 11 29 2 0 MatAssemblyEnd 2 1.0 3.4077e-02 1.4 7.61e+03 1.7 7.6e+01 9.2e+02 9.0e+00 0 0 11 2 14 0 0 11 2 15 1 MatGetRowIJ 2 1.0 5.1630e-06 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 9.7072e-04 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 5.3200e-04 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 2 0 0 0 0 2 0 VecTDot 14 1.0 1.4074e-03 2.1 2.84e+05 1.1 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 24 1582 VecNorm 9 1.0 7.0189e-03 5.6 1.83e+05 1.1 0.0e+00 0.0e+00 9.0e+00 0 5 0 0 14 0 5 0 0 15 204 VecCopy 2 1.0 2.4292e-04 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 11 1.0 3.5723e-04 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.0501e-03 3.3 2.84e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2120 VecAYPX 6 1.0 5.3177e-04 2.3 1.22e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1794 VecScatterBegin 10 1.0 1.0530e-03 2.7 0.00e+00 0.0 3.7e+02 3.0e+03 0.0e+00 0 0 56 31 0 0 0 56 31 0 0 VecScatterEnd 10 1.0 4.2569e-0255.0 1.13e+03 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 3.6934e-05 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.5062e-03 2.6 0.00e+00 0.0 2.2e+02 5.5e+02 3.0e+00 0 0 33 3 5 0 0 33 3 5 0 SFBcastOpBegin 9 1.0 9.1040e-04 2.9 0.00e+00 0.0 3.4e+02 3.2e+03 0.0e+00 0 0 51 29 0 0 0 51 29 0 0 SFBcastOpEnd 9 1.0 7.0703e-0313.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 3.8418e-05 1.7 0.00e+00 0.0 3.6e+01 1.4e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 1 1.0 3.5615e-02697.6 1.13e+03 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 10 1.0 4.1914e-04 4.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 10 1.0 4.3153e-05 1.5 1.13e+03 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 149 KSPSetUp 1 1.0 2.2406e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.3843e+00 1.0 2.83e+06 1.0 2.7e+02 3.7e+03 2.6e+01 21 79 40 26 39 21 79 40 26 44 16 PCSetUp 1 1.0 9.6229e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 15 0 0 0 6 15 0 0 0 7 0 PCApply 8 1.0 4.0555e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 6 0 0 0 0 6 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2110236 0. Index Set 6 6 16080 0. IS L to G Mapping 4 4 174700 0. Vec Scatter 3 3 1392 0. Vector 14 14 364856 0. Star Forest Graph 3 3 2064 0. Krylov Solver 1 1 952 0. Preconditioner 1 1 956 0. Viewer 2 1 532 0. ======================================================================================================================== Average time to get PetscTime(): 6.389e-07 Average time for MPI_Barrier(): 6.7458e-06 Average time for zero size MPI_Send(): 3.55262e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-i686-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/i386-linux-gnu -L/lib/i386-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak ==== poisson strong scaling (8 processes with ndofs=80000) ==== UnitCube (42x42x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: strong Num processes: 8 Num cells 444528 Total degrees of freedom: 79507 Average degrees of freedom per process: 9938 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=79507, cols=79507 total: nonzeros=1148743, allocated nonzeros=1148743 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 1.696657 1.696657 Build dofmap data | 2 0.170767 0.341534 Build sparsity | 1 0.329902 0.329902 Compute SCOTCH graph re-ordering | 2 0.006347 0.012694 Compute connectivity 2-3 | 1 0.002765 0.002765 Compute dof reordering map | 2 0.056243 0.112485 Compute entities of dim = 1 | 1 1.026755 1.026755 Compute entities of dim = 2 | 1 0.615122 0.615122 Compute graph partition (SCOTCH) | 1 1.039823 1.039823 Compute local part of mesh dual graph | 1 0.138038 0.138038 Compute local-to-local map | 1 0.008397 0.008397 Compute non-local part of mesh dual graph | 1 0.066424 0.066424 Compute-local-to-global links for global/local adjacency list | 1 0.001951 0.001951 Distribute in graph creation AdjacencyList | 1 0.045223 0.045223 Extract partition boundaries from SCOTCH graph | 1 0.007068 0.007068 Fetch float data from remote processes | 1 0.023725 0.023725 Get SCOTCH graph data | 1 0.000010 0.000010 Init dofmap from element dofmap | 2 0.036294 0.072589 PETSc Krylov solver | 1 1.372130 1.372130 SCOTCH: call SCOTCH_dgraphBuild | 1 0.003124 0.003124 SCOTCH: call SCOTCH_dgraphHalo | 1 0.004228 0.004228 SCOTCH: call SCOTCH_dgraphPart | 1 1.017813 1.017813 SCOTCH: call SCOTCH_graphBuild | 2 0.000017 0.000033 SCOTCH: call SCOTCH_graphOrder | 2 0.006009 0.012018 SparsityPattern::assemble | 1 0.105756 0.105756 TOPOLOGY: Create sets | 1 0.092968 0.092968 ZZZ Assemble | 1 1.279701 1.279701 ZZZ Assemble matrix | 1 0.207947 0.207947 ZZZ Assemble vector | 1 0.057250 0.057250 ZZZ Create Mesh | 1 1.697545 1.697545 ZZZ Create mesh entity permutations | 1 1.733018 1.733018 ZZZ FunctionSpace | 1 0.193496 0.193496 ZZZ Solve | 1 1.374576 1.374576 *** Number of Krylov iterations: 8 *** Solution norm: 14540.9 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 8 processors, by pbuilder2 Sat May 22 16:37:13 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 6.286e+00 1.000 6.286e+00 Objects: 3.800e+01 1.000 3.800e+01 Flop: 4.006e+06 1.064 3.911e+06 3.129e+07 Flop/sec: 6.372e+05 1.064 6.222e+05 4.977e+06 MPI Messages: 1.330e+02 1.750 1.011e+02 8.090e+02 MPI Message Lengths: 6.176e+05 1.471 4.815e+03 3.895e+06 MPI Reductions: 6.900e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 6.2863e+00 100.0% 3.1288e+07 100.0% 8.090e+02 100.0% 4.815e+03 100.0% 6.200e+01 89.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 1.1689e-01741.3 0.00e+00 0.0 1.7e+02 4.0e+00 4.0e+00 1 0 21 0 6 1 0 21 0 6 0 BuildTwoSidedF 1 1.0 1.1596e-011205.7 0.00e+00 0.0 8.2e+01 1.3e+04 1.0e+00 1 0 10 28 1 1 0 10 28 2 0 MatMult 8 1.0 1.4409e-02 1.0 2.27e+06 1.1 3.5e+02 3.2e+03 0.0e+00 0 57 44 29 0 0 57 44 29 0 1231 MatConvert 1 1.0 2.9856e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 6 0 0 0 0 6 0 MatAssemblyBegin 2 1.0 1.2228e-0110.0 0.00e+00 0.0 8.2e+01 1.3e+04 1.0e+00 1 0 10 28 1 1 0 10 28 2 0 MatAssemblyEnd 2 1.0 3.2522e-02 1.5 7.56e+03 1.8 8.8e+01 8.1e+02 9.0e+00 0 0 11 2 13 0 0 11 2 15 1 MatGetRowIJ 2 1.0 4.0520e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 1.2500e-03 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 6.2277e-04 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 16 1.0 1.5693e-03 1.8 3.27e+05 1.1 0.0e+00 0.0e+00 1.6e+01 0 8 0 0 23 0 8 0 0 26 1621 VecNorm 10 1.0 6.4884e-03 5.3 2.05e+05 1.1 0.0e+00 0.0e+00 1.0e+01 0 5 0 0 14 0 5 0 0 16 245 VecCopy 2 1.0 2.5056e-04 3.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 12 1.0 4.4937e-04 3.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 16 1.0 1.3382e-03 3.5 3.27e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1901 VecAYPX 7 1.0 7.1553e-04 3.4 1.43e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 1556 VecScatterBegin 11 1.0 8.3899e-04 2.1 0.00e+00 0.0 4.8e+02 2.7e+03 0.0e+00 0 0 59 33 0 0 0 59 33 0 0 VecScatterEnd 11 1.0 4.8324e-0291.4 1.12e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 2.9710e-05 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.3469e-03 2.5 0.00e+00 0.0 2.5e+02 4.9e+02 3.0e+00 0 0 31 3 4 0 0 31 3 5 0 SFBcastOpBegin 10 1.0 6.7463e-04 2.1 0.00e+00 0.0 4.3e+02 2.9e+03 0.0e+00 0 0 54 32 0 0 0 54 32 0 0 SFBcastOpEnd 10 1.0 8.3001e-0319.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 9.0517e-05 3.9 0.00e+00 0.0 4.1e+01 1.3e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 1 1.0 3.9976e-021353.2 1.12e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 11 1.0 2.5413e-04 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 11 1.0 4.0484e-05 1.5 1.12e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 161 KSPSetUp 1 1.0 2.1207e-04 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.3713e+00 1.0 3.25e+06 1.1 3.5e+02 3.2e+03 2.9e+01 22 81 44 29 42 22 81 44 29 47 19 PCSetUp 1 1.0 9.0872e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 14 0 0 0 6 14 0 0 0 6 0 PCApply 9 1.0 4.4433e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2121020 0. Index Set 6 6 16100 0. IS L to G Mapping 4 4 175336 0. Vec Scatter 3 3 1392 0. Vector 14 14 365904 0. Star Forest Graph 3 3 2064 0. Krylov Solver 1 1 952 0. Preconditioner 1 1 956 0. Viewer 2 1 532 0. ======================================================================================================================== Average time to get PetscTime(): 6.213e-07 Average time for MPI_Barrier(): 5.3518e-06 Average time for zero size MPI_Send(): 3.72575e-06 #PETSc Option Table entries: --ndofs 80000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=i686-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/i386-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real --PETSC_ARCH=i386-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-i686-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/i386-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-Y42f2G/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/i386-linux-gnu-real/lib -lpetsc_real -L/usr/lib/i386-linux-gnu/hdf5/openmpi -L/usr/lib/i386-linux-gnu/openmpi/lib -L/usr/lib/i386-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/i386-linux-gnu -L/lib/i386-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 80000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 80000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/fenicsx-performance-tests-0.0\~git20210119.80e82ac/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test -- Set runtime path of "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test" to "" make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.0~git20210119.80e82ac-1_i386.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.0~git20210119.80e82ac-1_all.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/9721/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/9721/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9721 and its subdirectories I: Current time: Sat May 22 16:37:39 +14 2021 I: pbuilder-time-stamp: 1621651059