W: cgroups are not available on the host, not using them. unshare: unshare failed: Cannot allocate memory W: pbuilder: unshare CLONE_NEWNET not available I: pbuilder: network access is available during build! I: Current time: Sun Jan 14 11:16:56 +14 2024 I: pbuilder-time-stamp: 1705180616 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [minimap2_2.17+dfsg-12.dsc] I: copying [./minimap2_2.17+dfsg.orig.tar.xz] I: copying [./minimap2_2.17+dfsg-12.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.WGPnui38/trustedkeys.kbx': General error gpgv: Signature made Tue Sep 15 08:57:53 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./minimap2_2.17+dfsg-12.dsc dpkg-source: info: extracting minimap2 in minimap2-2.17+dfsg dpkg-source: info: unpacking minimap2_2.17+dfsg.orig.tar.xz dpkg-source: info: unpacking minimap2_2.17+dfsg-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying do_not_use_natbib.bst.patch dpkg-source: info: applying simde dpkg-source: info: applying ar.patch dpkg-source: info: applying link_mappy_to_libminimap.patch dpkg-source: info: applying python-sse4-arch.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15871/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 13 21:17 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/15871/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/15871/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7 ' DIRSTACK=() DISTRIBUTION=bullseye EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=15871 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.POd6gH2a/pbuilderrc_09Ab --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.POd6gH2a/b2 --logfile b2/build.log minimap2_2.17+dfsg-12.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 7 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jan 20 2022 more -rwsr-xr-x 1 root root 50720 Jan 20 2022 mount -rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 9 Jan 13 21:17 sh -> /bin/bash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jan 20 2022 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/15871/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-science; however: Package texlive-science is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on gnuplot; however: Package gnuplot is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} aglfn{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} d-shlibs{a} dbus{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dmsetup{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-gfs-baskerville{a} fonts-gfs-porson{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} glib-networking{a} glib-networking-common{a} glib-networking-services{a} gnuplot{a} gnuplot-data{a} gnuplot-qt{a} groff-base{a} gsettings-desktop-schemas{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libargon2-1{a} libatk-bridge2.0-0{a} libatk1.0-0{a} libatk1.0-data{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcap2{a} libcolord2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcryptsetup12{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdevmapper1.02.1{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libepoxy0{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgd3{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf-xlib-2.0-0{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgtk-3-0{a} libgtk-3-common{a} libgudev-1.0-0{a} libharfbuzz0b{a} libice6{a} libicu67{a} libidn11{a} libijs-0.35{a} libinput-bin{a} libinput10{a} libip4tc2{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c5{a} libjson-glib-1.0-0{a} libjson-glib-1.0-common{a} libkmod2{a} libkpathsea6{a} liblcms2-2{a} libllvm11{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmd4c0{a} libmpdec3{a} libmtdev1{a} libnotify4{a} libopenjp2-7{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre2-16-0{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproxy1v5{a} libpsl5{a} libptexenc1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5gui5{a} libqt5network5{a} libqt5printsupport5{a} libqt5svg5{a} libqt5widgets5{a} libreadline8{a} librest-0.7-0{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsimde-dev{a} libsm6{a} libsoup-gnome2.4-1{a} libsoup2.4-1{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtiff5{a} libtool{a} libuchardet0{a} libvulkan1{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp6{a} libwxbase3.0-0v5{a} libwxgtk3.0-gtk3-0v5{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxxf86vm1{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} poppler-data{a} preview-latex-style{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-lang-greek{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-science{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: at-spi2-core awesome ca-certificates chrony cinnamon curl dunst dvisvgm fonts-droid-fallback gnome-flashback gnome-shell javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libgtk-3-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libnss-systemd librsvg2-common libwacom-bin libx11-protocol-perl lmodern lxqt-notificationd lynx mate-notification-daemon mesa-vulkan-drivers notification-daemon notify-osd ntp ntpsec openntpd phosh plasma-workspace ps2eps publicsuffix python3-jarabe qt5-gtk-platformtheme qttranslations5-l10n ruby systemd-timesyncd tex-gyre texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs xfce4-notifyd 0 packages upgraded, 278 newly installed, 0 to remove and 0 not upgraded. Need to get 314 MB of archives. After unpacking 947 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 libapparmor1 i386 2.13.6-10 [101 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libcap2 i386 1:2.44-1 [24.5 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 libargon2-1 i386 0~20171227-0.2 [24.1 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 dmsetup i386 2:1.02.175-2.1 [87.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 libdevmapper1.02.1 i386 2:1.02.175-2.1 [141 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libjson-c5 i386 0.15-2+deb11u1 [45.3 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libcryptsetup12 i386 2:2.3.7-1+deb11u1 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libip4tc2 i386 1.8.7-1 [35.4 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 libkmod2 i386 28-1 [61.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 systemd i386 247.3-7+deb11u4 [4623 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 systemd-sysv i386 247.3-7+deb11u4 [114 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libdbus-1-3 i386 1.12.28-0+deb11u1 [236 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2+deb11u5 [101 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 dbus i386 1.12.28-0+deb11u1 [255 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8+deb11u1 [149 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7+deb11u4 [728 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 shared-mime-info i386 2.0-1 [703 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libdouble-conversion3 i386 3.1.5-6.1 [44.8 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libpcre2-16-0 i386 10.36-2+deb11u1 [232 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libqt5core5a i386 5.15.2+dfsg-9 [2539 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1+deb11u1 [430 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 fonts-urw-base35 all 20200910-1 [6367 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 fontconfig i386 2.13.1-4.2 [417 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libdrm-common all 2.4.104-1 [14.9 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libdrm2 i386 2.4.104-1 [44.3 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libglvnd0 i386 1.3.2-1 [44.1 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libwayland-server0 i386 1.18.0-2~exp1.1 [36.0 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libgbm1 i386 20.3.5-1 [74.7 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libglapi-mesa i386 20.3.5-1 [71.9 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libwayland-client0 i386 1.18.0-2~exp1.1 [27.7 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1+deb11u1 [111 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.2-1+deb11u1 [796 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libx11-xcb1 i386 2:1.7.2-1+deb11u1 [203 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libxcb-dri2-0 i386 1.14-3 [103 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libxcb-dri3-0 i386 1.14-3 [103 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 libxcb-present0 i386 1.14-3 [101 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libxcb-sync1 i386 1.14-3 [105 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libxcb-xfixes0 i386 1.14-3 [105 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 58 http://deb.debian.org/debian bullseye/main i386 libegl-mesa0 i386 20.3.5-1 [148 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libegl1 i386 1.3.2-1 [36.7 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libxcb-glx0 i386 1.14-3 [120 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libxdamage1 i386 1:1.1.5-2 [15.9 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libxfixes3 i386 1:5.0.3-2 [22.6 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libdrm-amdgpu1 i386 2.4.104-1 [31.5 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libdrm-intel1 i386 2.4.104-1 [74.5 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libdrm-nouveau2 i386 2.4.104-1 [28.5 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libdrm-radeon1 i386 2.4.104-1 [31.4 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libz3-4 i386 4.8.10-1 [7737 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libllvm11 i386 1:11.0.1-2 [17.7 MB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libsensors5 i386 1:3.6.0-7 [53.2 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 libvulkan1 i386 1.2.162.0-1 [110 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libgl1-mesa-dri i386 20.3.5-1 [9948 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libglx-mesa0 i386 20.3.5-1 [195 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libglx0 i386 1.3.2-1 [39.1 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libgl1 i386 1.3.2-1 [83.6 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libevdev2 i386 1.11.0+dfsg-1 [32.4 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libmtdev1 i386 1.1.6-1 [23.5 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libgudev-1.0-0 i386 234-1 [15.2 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libwacom-common all 1.8-2 [49.7 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libwacom2 i386 1.8-2 [23.0 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libinput-bin i386 1.16.4-3 [23.6 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libinput10 i386 1.16.4-3 [131 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libmd4c0 i386 0.4.7-2 [44.3 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libqt5dbus5 i386 5.15.2+dfsg-9 [254 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libqt5network5 i386 5.15.2+dfsg-9 [746 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libxcb-icccm4 i386 0.4.1-1.1 [28.1 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libxcb-util1 i386 0.4.0-1+b1 [23.6 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libxcb-image0 i386 0.4.0-1+b3 [24.8 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libxcb-keysyms1 i386 0.4.0-1+b2 [16.7 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libxcb-randr0 i386 1.14-3 [114 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libxcb-render-util0 i386 0.3.9-1+b1 [18.7 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libxcb-shape0 i386 1.14-3 [102 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libxcb-xinerama0 i386 1.14-3 [101 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libxcb-xinput0 i386 1.14-3 [129 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libxcb-xkb1 i386 1.14-3 [127 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 xkb-data all 2.29-2 [655 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libxkbcommon0 i386 1.0.3-2 [107 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libxkbcommon-x11-0 i386 1.0.3-2 [17.6 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libqt5gui5 i386 5.15.2+dfsg-9 [5795 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libqt5widgets5 i386 5.15.2+dfsg-9 [2628 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 libqt5svg5 i386 5.15.2-3 [148 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 poppler-data all 0.4.10-1 [1602 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 tzdata all 2021a-1+deb11u10 [286 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 tex-common all 6.16 [53.7 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3+deb11u1 [273 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3+deb11u1 [135 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3+deb11u1 [69.2 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 libpam-systemd i386 247.3-7+deb11u4 [291 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u1 [320 kB] Get: 137 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1+deb11u2 [269 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1+deb11u4 [305 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 libgdk-pixbuf-2.0-0 i386 2.42.2+dfsg-1+deb11u1 [156 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 gtk-update-icon-cache i386 3.24.24-4+deb11u3 [88.7 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 adwaita-icon-theme all 3.38.0-1 [10.9 MB] Get: 144 http://deb.debian.org/debian bullseye/main i386 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 151 http://deb.debian.org/debian bullseye/main i386 cython3 i386 0.29.21-3+b1 [1303 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 d-shlibs all 0.98 [17.9 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 dbus-user-session i386 1.12.28-0+deb11u1 [100 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 libdconf1 i386 0.38.0-2 [45.2 kB] Get: 155 http://deb.debian.org/debian bullseye/main i386 dconf-service i386 0.38.0-2 [40.1 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 dconf-gsettings-backend i386 0.38.0-2 [32.5 kB] Get: 157 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 159 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 162 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 163 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 166 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 167 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 169 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 171 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 fonts-gfs-baskerville all 1.1-6 [43.7 kB] Get: 173 http://deb.debian.org/debian bullseye/main i386 fonts-gfs-porson all 1.1-7 [33.8 kB] Get: 174 http://deb.debian.org/debian bullseye/main i386 fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 175 http://deb.debian.org/debian bullseye/main i386 libgs9-common all 9.53.3~dfsg-7+deb11u6 [735 kB] Get: 176 http://deb.debian.org/debian bullseye/main i386 libavahi-common-data i386 0.8-5+deb11u2 [124 kB] Get: 177 http://deb.debian.org/debian bullseye/main i386 libavahi-common3 i386 0.8-5+deb11u2 [60.4 kB] Get: 178 http://deb.debian.org/debian bullseye/main i386 libavahi-client3 i386 0.8-5+deb11u2 [64.6 kB] Get: 179 http://deb.debian.org/debian bullseye/main i386 libcups2 i386 2.3.3op2-3+deb11u6 [367 kB] Get: 180 http://deb.debian.org/debian bullseye/main i386 libidn11 i386 1.33-3 [117 kB] Get: 181 http://deb.debian.org/debian bullseye/main i386 libijs-0.35 i386 0.35-15 [16.9 kB] Get: 182 http://deb.debian.org/debian bullseye/main i386 libjbig2dec0 i386 0.19-2 [69.9 kB] Get: 183 http://deb.debian.org/debian bullseye/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB] Get: 184 http://deb.debian.org/debian bullseye/main i386 libopenjp2-7 i386 2.4.0-3 [179 kB] Get: 185 http://deb.debian.org/debian bullseye/main i386 libpaper1 i386 1.1.28+b1 [21.7 kB] Get: 186 http://deb.debian.org/debian bullseye/main i386 libgs9 i386 9.53.3~dfsg-7+deb11u6 [2365 kB] Get: 187 http://deb.debian.org/debian bullseye/main i386 ghostscript i386 9.53.3~dfsg-7+deb11u6 [98.4 kB] Get: 188 http://deb.debian.org/debian bullseye/main i386 libproxy1v5 i386 0.4.17-1 [64.0 kB] Get: 189 http://deb.debian.org/debian bullseye/main i386 glib-networking-common all 2.66.0-2 [68.1 kB] Get: 190 http://deb.debian.org/debian bullseye/main i386 glib-networking-services i386 2.66.0-2 [17.9 kB] Get: 191 http://deb.debian.org/debian bullseye/main i386 gsettings-desktop-schemas all 3.38.0-2 [588 kB] Get: 192 http://deb.debian.org/debian bullseye/main i386 glib-networking i386 2.66.0-2 [73.0 kB] Get: 193 http://deb.debian.org/debian bullseye/main i386 gnuplot-data all 5.4.1+dfsg1-1+deb11u1 [87.5 kB] Get: 194 http://deb.debian.org/debian bullseye/main i386 libpixman-1-0 i386 0.40.0-1.1~deb11u1 [545 kB] Get: 195 http://deb.debian.org/debian bullseye/main i386 libcairo2 i386 1.16.0-5 [746 kB] Get: 196 http://deb.debian.org/debian bullseye/main i386 libxpm4 i386 1:3.5.12-1.1~deb11u1 [51.2 kB] Get: 197 http://deb.debian.org/debian bullseye/main i386 libgd3 i386 2.3.0-2 [142 kB] Get: 198 http://deb.debian.org/debian bullseye/main i386 liblua5.4-0 i386 5.4.2-2 [158 kB] Get: 199 http://deb.debian.org/debian bullseye/main i386 libfribidi0 i386 1.0.8-2+deb11u1 [65.6 kB] Get: 200 http://deb.debian.org/debian bullseye/main i386 libthai-data all 0.1.28-3 [170 kB] Get: 201 http://deb.debian.org/debian bullseye/main i386 libdatrie1 i386 0.2.13-1 [44.5 kB] Get: 202 http://deb.debian.org/debian bullseye/main i386 libthai0 i386 0.1.28-3 [55.3 kB] Get: 203 http://deb.debian.org/debian bullseye/main i386 libpango-1.0-0 i386 1.46.2-3 [197 kB] Get: 204 http://deb.debian.org/debian bullseye/main i386 libpangoft2-1.0-0 i386 1.46.2-3 [65.1 kB] Get: 205 http://deb.debian.org/debian bullseye/main i386 libpangocairo-1.0-0 i386 1.46.2-3 [51.9 kB] Get: 206 http://deb.debian.org/debian bullseye/main i386 libqt5printsupport5 i386 5.15.2+dfsg-9 [239 kB] Get: 207 http://deb.debian.org/debian bullseye/main i386 libwxbase3.0-0v5 i386 3.0.5.1+dfsg-2 [1160 kB] Get: 208 http://deb.debian.org/debian bullseye/main i386 libgdk-pixbuf-xlib-2.0-0 i386 2.40.2-2 [48.0 kB] Get: 209 http://deb.debian.org/debian bullseye/main i386 libgdk-pixbuf2.0-0 i386 2.40.2-2 [14.1 kB] Get: 210 http://deb.debian.org/debian bullseye/main i386 libatk1.0-data all 2.36.0-2 [149 kB] Get: 211 http://deb.debian.org/debian bullseye/main i386 libatk1.0-0 i386 2.36.0-2 [51.9 kB] Get: 212 http://deb.debian.org/debian bullseye/main i386 libatspi2.0-0 i386 2.38.0-4+deb11u1 [75.6 kB] Get: 213 http://deb.debian.org/debian bullseye/main i386 libatk-bridge2.0-0 i386 2.38.0-1 [68.7 kB] Get: 214 http://deb.debian.org/debian bullseye/main i386 libcairo-gobject2 i386 1.16.0-5 [125 kB] Get: 215 http://deb.debian.org/debian bullseye/main i386 libcolord2 i386 1.4.5-3 [151 kB] Get: 216 http://deb.debian.org/debian bullseye/main i386 libepoxy0 i386 1.5.5-1 [196 kB] Get: 217 http://deb.debian.org/debian bullseye/main i386 libjson-glib-1.0-common all 1.6.2-1 [56.9 kB] Get: 218 http://deb.debian.org/debian bullseye/main i386 libjson-glib-1.0-0 i386 1.6.2-1 [69.3 kB] Get: 219 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 220 http://deb.debian.org/debian bullseye/main i386 libsoup2.4-1 i386 2.72.0-2 [297 kB] Get: 221 http://deb.debian.org/debian bullseye/main i386 libsoup-gnome2.4-1 i386 2.72.0-2 [22.3 kB] Get: 222 http://deb.debian.org/debian bullseye/main i386 librest-0.7-0 i386 0.8.1-1.1 [35.3 kB] Get: 223 http://deb.debian.org/debian bullseye/main i386 libwayland-cursor0 i386 1.18.0-2~exp1.1 [15.4 kB] Get: 224 http://deb.debian.org/debian bullseye/main i386 libwayland-egl1 i386 1.18.0-2~exp1.1 [8544 B] Get: 225 http://deb.debian.org/debian bullseye/main i386 libxcomposite1 i386 1:0.4.5-1 [16.9 kB] Get: 226 http://deb.debian.org/debian bullseye/main i386 libxcursor1 i386 1:1.2.0-2 [38.8 kB] Get: 227 http://deb.debian.org/debian bullseye/main i386 libxi6 i386 2:1.7.10-1 [85.1 kB] Get: 228 http://deb.debian.org/debian bullseye/main i386 libxinerama1 i386 2:1.1.4-2 [17.9 kB] Get: 229 http://deb.debian.org/debian bullseye/main i386 libxrandr2 i386 2:1.5.1-1 [39.3 kB] Get: 230 http://deb.debian.org/debian bullseye/main i386 libgtk-3-common all 3.24.24-4+deb11u3 [3757 kB] Get: 231 http://deb.debian.org/debian bullseye/main i386 libgtk-3-0 i386 3.24.24-4+deb11u3 [2882 kB] Get: 232 http://deb.debian.org/debian bullseye/main i386 libnotify4 i386 0.7.9-3 [24.3 kB] Get: 233 http://deb.debian.org/debian bullseye/main i386 libwxgtk3.0-gtk3-0v5 i386 3.0.5.1+dfsg-2 [4761 kB] Get: 234 http://deb.debian.org/debian bullseye/main i386 gnuplot-qt i386 5.4.1+dfsg1-1+deb11u1 [1094 kB] Get: 235 http://deb.debian.org/debian bullseye/main i386 gnuplot all 5.4.1+dfsg1-1+deb11u1 [21.2 kB] Get: 236 http://deb.debian.org/debian bullseye/main i386 libapache-pom-java all 18-1 [4676 B] Get: 237 http://deb.debian.org/debian bullseye/main i386 libcommons-parent-java all 43-1 [10.8 kB] Get: 238 http://deb.debian.org/debian bullseye/main i386 libcommons-logging-java all 1.2-2 [62.2 kB] Get: 239 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2+deb11u5 [149 kB] Get: 240 http://deb.debian.org/debian bullseye/main i386 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 241 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 242 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 243 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 244 http://deb.debian.org/debian bullseye/main i386 libkpathsea6 i386 2020.20200327.54578-7+deb11u1 [176 kB] Get: 245 http://deb.debian.org/debian bullseye/main i386 libpaper-utils i386 1.1.28+b1 [18.6 kB] Get: 246 http://deb.debian.org/debian bullseye/main i386 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 247 http://deb.debian.org/debian bullseye/main i386 libptexenc1 i386 2020.20200327.54578-7+deb11u1 [65.2 kB] Get: 248 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 249 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 250 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 251 http://deb.debian.org/debian bullseye/main i386 libpython3-all-dev i386 3.9.2-3 [1068 B] Get: 252 http://deb.debian.org/debian bullseye/main i386 libsimde-dev all 0.7.2-4 [259 kB] Get: 253 http://deb.debian.org/debian bullseye/main i386 libsynctex2 i386 2020.20200327.54578-7+deb11u1 [86.1 kB] Get: 254 http://deb.debian.org/debian bullseye/main i386 libteckit0 i386 2.5.10+ds1-3 [277 kB] Get: 255 http://deb.debian.org/debian bullseye/main i386 libtexlua53 i386 2020.20200327.54578-7+deb11u1 [146 kB] Get: 256 http://deb.debian.org/debian bullseye/main i386 libtexluajit2 i386 2020.20200327.54578-7+deb11u1 [284 kB] Get: 257 http://deb.debian.org/debian bullseye/main i386 libxt6 i386 1:1.2.0-1 [195 kB] Get: 258 http://deb.debian.org/debian bullseye/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB] Get: 259 http://deb.debian.org/debian bullseye/main i386 libxaw7 i386 2:1.0.13-1.1 [210 kB] Get: 260 http://deb.debian.org/debian bullseye/main i386 libzzip-0-13 i386 0.13.62-3.3+deb11u1 [57.7 kB] Get: 261 http://deb.debian.org/debian bullseye/main i386 preview-latex-style all 12.2-1 [201 kB] Get: 262 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 263 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB] Get: 264 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 265 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 266 http://deb.debian.org/debian bullseye/main i386 python3-all-dev i386 3.9.2-3 [1068 B] Get: 267 http://deb.debian.org/debian bullseye/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 268 http://deb.debian.org/debian bullseye/main i386 texlive-binaries i386 2020.20200327.54578-7+deb11u1 [10.1 MB] Get: 269 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 270 http://deb.debian.org/debian bullseye/main i386 texlive-base all 2020.20210202-3 [20.8 MB] Get: 271 http://deb.debian.org/debian bullseye/main i386 texlive-font-utils all 2020.20210202-3 [4672 kB] Get: 272 http://deb.debian.org/debian bullseye/main i386 texlive-fonts-recommended all 2020.20210202-3 [5002 kB] Get: 273 http://deb.debian.org/debian bullseye/main i386 texlive-lang-greek all 2020.20210202-2 [77.6 MB] Get: 274 http://deb.debian.org/debian bullseye/main i386 texlive-latex-base all 2020.20210202-3 [1120 kB] Get: 275 http://deb.debian.org/debian bullseye/main i386 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 276 http://deb.debian.org/debian bullseye/main i386 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 277 http://deb.debian.org/debian bullseye/main i386 texlive-latex-extra all 2020.20210202-3 [13.7 MB] Get: 278 http://deb.debian.org/debian bullseye/main i386 texlive-science all 2020.20210202-3 [3367 kB] Fetched 314 MB in 25s (12.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.13.6-10_i386.deb ... Unpacking libapparmor1:i386 (2.13.6-10) ... Selecting previously unselected package libcap2:i386. Preparing to unpack .../1-libcap2_1%3a2.44-1_i386.deb ... Unpacking libcap2:i386 (1:2.44-1) ... Selecting previously unselected package libargon2-1:i386. Preparing to unpack .../2-libargon2-1_0~20171227-0.2_i386.deb ... Unpacking libargon2-1:i386 (0~20171227-0.2) ... Selecting previously unselected package dmsetup. Preparing to unpack .../3-dmsetup_2%3a1.02.175-2.1_i386.deb ... Unpacking dmsetup (2:1.02.175-2.1) ... Selecting previously unselected package libdevmapper1.02.1:i386. Preparing to unpack .../4-libdevmapper1.02.1_2%3a1.02.175-2.1_i386.deb ... Unpacking libdevmapper1.02.1:i386 (2:1.02.175-2.1) ... Selecting previously unselected package libjson-c5:i386. Preparing to unpack .../5-libjson-c5_0.15-2+deb11u1_i386.deb ... Unpacking libjson-c5:i386 (0.15-2+deb11u1) ... Selecting previously unselected package libcryptsetup12:i386. Preparing to unpack .../6-libcryptsetup12_2%3a2.3.7-1+deb11u1_i386.deb ... Unpacking libcryptsetup12:i386 (2:2.3.7-1+deb11u1) ... Selecting previously unselected package libip4tc2:i386. Preparing to unpack .../7-libip4tc2_1.8.7-1_i386.deb ... Unpacking libip4tc2:i386 (1.8.7-1) ... Selecting previously unselected package libkmod2:i386. Preparing to unpack .../8-libkmod2_28-1_i386.deb ... Unpacking libkmod2:i386 (28-1) ... Selecting previously unselected package systemd. Preparing to unpack .../9-systemd_247.3-7+deb11u4_i386.deb ... Unpacking systemd (247.3-7+deb11u4) ... Setting up libapparmor1:i386 (2.13.6-10) ... Setting up libcap2:i386 (1:2.44-1) ... Setting up libargon2-1:i386 (0~20171227-0.2) ... Setting up libjson-c5:i386 (0.15-2+deb11u1) ... Setting up libip4tc2:i386 (1.8.7-1) ... Setting up libkmod2:i386 (28-1) ... Setting up libdevmapper1.02.1:i386 (2:1.02.175-2.1) ... Setting up libcryptsetup12:i386 (2:2.3.7-1+deb11u1) ... Setting up systemd (247.3-7+deb11u4) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. ERROR: ld.so: object 'libeatmydata.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libeatmydata.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. Setting up dmsetup (2:1.02.175-2.1) ... Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18618 files and directories currently installed.) Preparing to unpack .../000-systemd-sysv_247.3-7+deb11u4_i386.deb ... Unpacking systemd-sysv (247.3-7+deb11u4) ... Selecting previously unselected package libdbus-1-3:i386. Preparing to unpack .../001-libdbus-1-3_1.12.28-0+deb11u1_i386.deb ... Unpacking libdbus-1-3:i386 (1.12.28-0+deb11u1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../002-libexpat1_2.2.10-2+deb11u5_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2+deb11u5) ... Selecting previously unselected package dbus. Preparing to unpack .../003-dbus_1.12.28-0+deb11u1_i386.deb ... Unpacking dbus (1.12.28-0+deb11u1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../004-bsdextrautils_2.36.1-8+deb11u1_i386.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../005-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../007-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../008-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../009-libglib2.0-0_2.66.8-1_i386.deb ... Unpacking libglib2.0-0:i386 (2.66.8-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../010-libicu67_67.1-7_i386.deb ... Unpacking libicu67:i386 (67.1-7) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../011-libxml2_2.9.10+dfsg-6.7+deb11u4_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../012-shared-mime-info_2.0-1_i386.deb ... Unpacking shared-mime-info (2.0-1) ... Selecting previously unselected package libdouble-conversion3:i386. Preparing to unpack .../013-libdouble-conversion3_3.1.5-6.1_i386.deb ... Unpacking libdouble-conversion3:i386 (3.1.5-6.1) ... Selecting previously unselected package libpcre2-16-0:i386. Preparing to unpack .../014-libpcre2-16-0_10.36-2+deb11u1_i386.deb ... Unpacking libpcre2-16-0:i386 (10.36-2+deb11u1) ... Selecting previously unselected package libqt5core5a:i386. Preparing to unpack .../015-libqt5core5a_5.15.2+dfsg-9_i386.deb ... Unpacking libqt5core5a:i386 (5.15.2+dfsg-9) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../016-libbrotli1_1.0.9-2+b2_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../017-libpng16-16_1.6.37-3_i386.deb ... Unpacking libpng16-16:i386 (1.6.37-3) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../018-libfreetype6_2.10.4+dfsg-1+deb11u1_i386.deb ... Unpacking libfreetype6:i386 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../019-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package ucf. Preparing to unpack .../020-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../021-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../022-fonts-urw-base35_20200910-1_all.deb ... Unpacking fonts-urw-base35 (20200910-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../023-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../024-libfontconfig1_2.13.1-4.2_i386.deb ... Unpacking libfontconfig1:i386 (2.13.1-4.2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../025-fontconfig_2.13.1-4.2_i386.deb ... Unpacking fontconfig (2.13.1-4.2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../026-libdrm-common_2.4.104-1_all.deb ... Unpacking libdrm-common (2.4.104-1) ... Selecting previously unselected package libdrm2:i386. Preparing to unpack .../027-libdrm2_2.4.104-1_i386.deb ... Unpacking libdrm2:i386 (2.4.104-1) ... Selecting previously unselected package libglvnd0:i386. Preparing to unpack .../028-libglvnd0_1.3.2-1_i386.deb ... Unpacking libglvnd0:i386 (1.3.2-1) ... Selecting previously unselected package libwayland-server0:i386. Preparing to unpack .../029-libwayland-server0_1.18.0-2~exp1.1_i386.deb ... Unpacking libwayland-server0:i386 (1.18.0-2~exp1.1) ... Selecting previously unselected package libgbm1:i386. Preparing to unpack .../030-libgbm1_20.3.5-1_i386.deb ... Unpacking libgbm1:i386 (20.3.5-1) ... Selecting previously unselected package libglapi-mesa:i386. Preparing to unpack .../031-libglapi-mesa_20.3.5-1_i386.deb ... Unpacking libglapi-mesa:i386 (20.3.5-1) ... Selecting previously unselected package libwayland-client0:i386. Preparing to unpack .../032-libwayland-client0_1.18.0-2~exp1.1_i386.deb ... Unpacking libwayland-client0:i386 (1.18.0-2~exp1.1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../033-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libmd0:i386. Preparing to unpack .../034-libmd0_1.0.3-3_i386.deb ... Unpacking libmd0:i386 (1.0.3-3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../035-libbsd0_0.11.3-1+deb11u1_i386.deb ... Unpacking libbsd0:i386 (0.11.3-1+deb11u1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../036-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../037-libxcb1_1.14-3_i386.deb ... Unpacking libxcb1:i386 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../038-libx11-data_2%3a1.7.2-1+deb11u1_all.deb ... Unpacking libx11-data (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../039-libx11-6_2%3a1.7.2-1+deb11u1_i386.deb ... Unpacking libx11-6:i386 (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libx11-xcb1:i386. Preparing to unpack .../040-libx11-xcb1_2%3a1.7.2-1+deb11u1_i386.deb ... Unpacking libx11-xcb1:i386 (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libxcb-dri2-0:i386. Preparing to unpack .../041-libxcb-dri2-0_1.14-3_i386.deb ... Unpacking libxcb-dri2-0:i386 (1.14-3) ... Selecting previously unselected package libxcb-dri3-0:i386. Preparing to unpack .../042-libxcb-dri3-0_1.14-3_i386.deb ... Unpacking libxcb-dri3-0:i386 (1.14-3) ... Selecting previously unselected package libxcb-present0:i386. Preparing to unpack .../043-libxcb-present0_1.14-3_i386.deb ... Unpacking libxcb-present0:i386 (1.14-3) ... Selecting previously unselected package libxcb-sync1:i386. Preparing to unpack .../044-libxcb-sync1_1.14-3_i386.deb ... Unpacking libxcb-sync1:i386 (1.14-3) ... Selecting previously unselected package libxcb-xfixes0:i386. Preparing to unpack .../045-libxcb-xfixes0_1.14-3_i386.deb ... Unpacking libxcb-xfixes0:i386 (1.14-3) ... Selecting previously unselected package libxshmfence1:i386. Preparing to unpack .../046-libxshmfence1_1.3-1_i386.deb ... Unpacking libxshmfence1:i386 (1.3-1) ... Selecting previously unselected package libegl-mesa0:i386. Preparing to unpack .../047-libegl-mesa0_20.3.5-1_i386.deb ... Unpacking libegl-mesa0:i386 (20.3.5-1) ... Selecting previously unselected package libegl1:i386. Preparing to unpack .../048-libegl1_1.3.2-1_i386.deb ... Unpacking libegl1:i386 (1.3.2-1) ... Selecting previously unselected package libxcb-glx0:i386. Preparing to unpack .../049-libxcb-glx0_1.14-3_i386.deb ... Unpacking libxcb-glx0:i386 (1.14-3) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../050-libxcb-shm0_1.14-3_i386.deb ... Unpacking libxcb-shm0:i386 (1.14-3) ... Selecting previously unselected package libxdamage1:i386. Preparing to unpack .../051-libxdamage1_1%3a1.1.5-2_i386.deb ... Unpacking libxdamage1:i386 (1:1.1.5-2) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../052-libxext6_2%3a1.3.3-1.1_i386.deb ... Unpacking libxext6:i386 (2:1.3.3-1.1) ... Selecting previously unselected package libxfixes3:i386. Preparing to unpack .../053-libxfixes3_1%3a5.0.3-2_i386.deb ... Unpacking libxfixes3:i386 (1:5.0.3-2) ... Selecting previously unselected package libxxf86vm1:i386. Preparing to unpack .../054-libxxf86vm1_1%3a1.1.4-1+b2_i386.deb ... Unpacking libxxf86vm1:i386 (1:1.1.4-1+b2) ... Selecting previously unselected package libdrm-amdgpu1:i386. Preparing to unpack .../055-libdrm-amdgpu1_2.4.104-1_i386.deb ... Unpacking libdrm-amdgpu1:i386 (2.4.104-1) ... Selecting previously unselected package libpciaccess0:i386. Preparing to unpack .../056-libpciaccess0_0.16-1_i386.deb ... Unpacking libpciaccess0:i386 (0.16-1) ... Selecting previously unselected package libdrm-intel1:i386. Preparing to unpack .../057-libdrm-intel1_2.4.104-1_i386.deb ... Unpacking libdrm-intel1:i386 (2.4.104-1) ... Selecting previously unselected package libdrm-nouveau2:i386. Preparing to unpack .../058-libdrm-nouveau2_2.4.104-1_i386.deb ... Unpacking libdrm-nouveau2:i386 (2.4.104-1) ... Selecting previously unselected package libdrm-radeon1:i386. Preparing to unpack .../059-libdrm-radeon1_2.4.104-1_i386.deb ... Unpacking libdrm-radeon1:i386 (2.4.104-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../060-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../061-libedit2_3.1-20191231-2+b1_i386.deb ... Unpacking libedit2:i386 (3.1-20191231-2+b1) ... Selecting previously unselected package libz3-4:i386. Preparing to unpack .../062-libz3-4_4.8.10-1_i386.deb ... Unpacking libz3-4:i386 (4.8.10-1) ... Selecting previously unselected package libllvm11:i386. Preparing to unpack .../063-libllvm11_1%3a11.0.1-2_i386.deb ... Unpacking libllvm11:i386 (1:11.0.1-2) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../064-libsensors-config_1%3a3.6.0-7_all.deb ... Unpacking libsensors-config (1:3.6.0-7) ... Selecting previously unselected package libsensors5:i386. Preparing to unpack .../065-libsensors5_1%3a3.6.0-7_i386.deb ... Unpacking libsensors5:i386 (1:3.6.0-7) ... Selecting previously unselected package libvulkan1:i386. Preparing to unpack .../066-libvulkan1_1.2.162.0-1_i386.deb ... Unpacking libvulkan1:i386 (1.2.162.0-1) ... Selecting previously unselected package libgl1-mesa-dri:i386. Preparing to unpack .../067-libgl1-mesa-dri_20.3.5-1_i386.deb ... Unpacking libgl1-mesa-dri:i386 (20.3.5-1) ... Selecting previously unselected package libglx-mesa0:i386. Preparing to unpack .../068-libglx-mesa0_20.3.5-1_i386.deb ... Unpacking libglx-mesa0:i386 (20.3.5-1) ... Selecting previously unselected package libglx0:i386. Preparing to unpack .../069-libglx0_1.3.2-1_i386.deb ... Unpacking libglx0:i386 (1.3.2-1) ... Selecting previously unselected package libgl1:i386. Preparing to unpack .../070-libgl1_1.3.2-1_i386.deb ... Unpacking libgl1:i386 (1.3.2-1) ... Selecting previously unselected package libgraphite2-3:i386. Preparing to unpack .../071-libgraphite2-3_1.3.14-1_i386.deb ... Unpacking libgraphite2-3:i386 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:i386. Preparing to unpack .../072-libharfbuzz0b_2.7.4-1_i386.deb ... Unpacking libharfbuzz0b:i386 (2.7.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../073-x11-common_1%3a7.7+22_all.deb ... Unpacking x11-common (1:7.7+22) ... Selecting previously unselected package libice6:i386. Preparing to unpack .../074-libice6_2%3a1.0.10-1_i386.deb ... Unpacking libice6:i386 (2:1.0.10-1) ... Selecting previously unselected package libevdev2:i386. Preparing to unpack .../075-libevdev2_1.11.0+dfsg-1_i386.deb ... Unpacking libevdev2:i386 (1.11.0+dfsg-1) ... Selecting previously unselected package libmtdev1:i386. Preparing to unpack .../076-libmtdev1_1.1.6-1_i386.deb ... Unpacking libmtdev1:i386 (1.1.6-1) ... Selecting previously unselected package libgudev-1.0-0:i386. Preparing to unpack .../077-libgudev-1.0-0_234-1_i386.deb ... Unpacking libgudev-1.0-0:i386 (234-1) ... Selecting previously unselected package libwacom-common. Preparing to unpack .../078-libwacom-common_1.8-2_all.deb ... Unpacking libwacom-common (1.8-2) ... Selecting previously unselected package libwacom2:i386. Preparing to unpack .../079-libwacom2_1.8-2_i386.deb ... Unpacking libwacom2:i386 (1.8-2) ... Selecting previously unselected package libinput-bin. Preparing to unpack .../080-libinput-bin_1.16.4-3_i386.deb ... Unpacking libinput-bin (1.16.4-3) ... Selecting previously unselected package libinput10:i386. Preparing to unpack .../081-libinput10_1.16.4-3_i386.deb ... Unpacking libinput10:i386 (1.16.4-3) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../082-libjpeg62-turbo_1%3a2.0.6-4_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.0.6-4) ... Selecting previously unselected package libmd4c0:i386. Preparing to unpack .../083-libmd4c0_0.4.7-2_i386.deb ... Unpacking libmd4c0:i386 (0.4.7-2) ... Selecting previously unselected package libqt5dbus5:i386. Preparing to unpack .../084-libqt5dbus5_5.15.2+dfsg-9_i386.deb ... Unpacking libqt5dbus5:i386 (5.15.2+dfsg-9) ... Selecting previously unselected package libqt5network5:i386. Preparing to unpack .../085-libqt5network5_5.15.2+dfsg-9_i386.deb ... Unpacking libqt5network5:i386 (5.15.2+dfsg-9) ... Selecting previously unselected package libsm6:i386. Preparing to unpack .../086-libsm6_2%3a1.2.3-1_i386.deb ... Unpacking libsm6:i386 (2:1.2.3-1) ... Selecting previously unselected package libxcb-icccm4:i386. Preparing to unpack .../087-libxcb-icccm4_0.4.1-1.1_i386.deb ... Unpacking libxcb-icccm4:i386 (0.4.1-1.1) ... Selecting previously unselected package libxcb-util1:i386. Preparing to unpack .../088-libxcb-util1_0.4.0-1+b1_i386.deb ... Unpacking libxcb-util1:i386 (0.4.0-1+b1) ... Selecting previously unselected package libxcb-image0:i386. Preparing to unpack .../089-libxcb-image0_0.4.0-1+b3_i386.deb ... Unpacking libxcb-image0:i386 (0.4.0-1+b3) ... Selecting previously unselected package libxcb-keysyms1:i386. Preparing to unpack .../090-libxcb-keysyms1_0.4.0-1+b2_i386.deb ... Unpacking libxcb-keysyms1:i386 (0.4.0-1+b2) ... Selecting previously unselected package libxcb-randr0:i386. Preparing to unpack .../091-libxcb-randr0_1.14-3_i386.deb ... Unpacking libxcb-randr0:i386 (1.14-3) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../092-libxcb-render0_1.14-3_i386.deb ... Unpacking libxcb-render0:i386 (1.14-3) ... Selecting previously unselected package libxcb-render-util0:i386. Preparing to unpack .../093-libxcb-render-util0_0.3.9-1+b1_i386.deb ... Unpacking libxcb-render-util0:i386 (0.3.9-1+b1) ... Selecting previously unselected package libxcb-shape0:i386. Preparing to unpack .../094-libxcb-shape0_1.14-3_i386.deb ... Unpacking libxcb-shape0:i386 (1.14-3) ... Selecting previously unselected package libxcb-xinerama0:i386. Preparing to unpack .../095-libxcb-xinerama0_1.14-3_i386.deb ... Unpacking libxcb-xinerama0:i386 (1.14-3) ... Selecting previously unselected package libxcb-xinput0:i386. Preparing to unpack .../096-libxcb-xinput0_1.14-3_i386.deb ... Unpacking libxcb-xinput0:i386 (1.14-3) ... Selecting previously unselected package libxcb-xkb1:i386. Preparing to unpack .../097-libxcb-xkb1_1.14-3_i386.deb ... Unpacking libxcb-xkb1:i386 (1.14-3) ... Selecting previously unselected package xkb-data. Preparing to unpack .../098-xkb-data_2.29-2_all.deb ... Unpacking xkb-data (2.29-2) ... Selecting previously unselected package libxkbcommon0:i386. Preparing to unpack .../099-libxkbcommon0_1.0.3-2_i386.deb ... Unpacking libxkbcommon0:i386 (1.0.3-2) ... Selecting previously unselected package libxkbcommon-x11-0:i386. Preparing to unpack .../100-libxkbcommon-x11-0_1.0.3-2_i386.deb ... Unpacking libxkbcommon-x11-0:i386 (1.0.3-2) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../101-libxrender1_1%3a0.9.10-1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1) ... Selecting previously unselected package libqt5gui5:i386. Preparing to unpack .../102-libqt5gui5_5.15.2+dfsg-9_i386.deb ... Unpacking libqt5gui5:i386 (5.15.2+dfsg-9) ... Selecting previously unselected package libqt5widgets5:i386. Preparing to unpack .../103-libqt5widgets5_5.15.2+dfsg-9_i386.deb ... Unpacking libqt5widgets5:i386 (5.15.2+dfsg-9) ... Selecting previously unselected package libqt5svg5:i386. Preparing to unpack .../104-libqt5svg5_5.15.2-3_i386.deb ... Unpacking libqt5svg5:i386 (5.15.2-3) ... Selecting previously unselected package poppler-data. Preparing to unpack .../105-poppler-data_0.4.10-1_all.deb ... Unpacking poppler-data (0.4.10-1) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../106-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../107-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22300 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package tzdata. Preparing to unpack .../2-tzdata_2021a-1+deb11u10_all.deb ... Unpacking tzdata (2021a-1+deb11u10) ... Selecting previously unselected package libmpdec3:i386. Preparing to unpack .../3-libmpdec3_2.5.1-1_i386.deb ... Unpacking libmpdec3:i386 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../5-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:i386. Preparing to unpack .../6-libpython3.9-stdlib_3.9.2-1_i386.deb ... Unpacking libpython3.9-stdlib:i386 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../7-python3.9_3.9.2-1_i386.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.9.2-3_i386.deb ... Unpacking libpython3-stdlib:i386 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24583 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package tex-common. Preparing to unpack .../001-tex-common_6.16_all.deb ... Unpacking tex-common (6.16) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.39-3+deb11u1_i386.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../003-libmagic1_1%3a5.39-3+deb11u1_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.39-3+deb11u1_i386.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libpam-systemd:i386. Preparing to unpack .../006-libpam-systemd_247.3-7+deb11u4_i386.deb ... Unpacking libpam-systemd:i386 (247.3-7+deb11u4) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../007-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../008-libgdk-pixbuf2.0-common_2.42.2+dfsg-1+deb11u1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../009-libdeflate0_1.7-1_i386.deb ... Unpacking libdeflate0:i386 (1.7-1) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../010-libjbig0_2.1-3.1+b2_i386.deb ... Unpacking libjbig0:i386 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:i386. Preparing to unpack .../011-libwebp6_0.6.1-2.1+deb11u2_i386.deb ... Unpacking libwebp6:i386 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libtiff5:i386. Preparing to unpack .../012-libtiff5_4.2.0-1+deb11u4_i386.deb ... Unpacking libtiff5:i386 (4.2.0-1+deb11u4) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:i386. Preparing to unpack .../013-libgdk-pixbuf-2.0-0_2.42.2+dfsg-1+deb11u1_i386.deb ... Unpacking libgdk-pixbuf-2.0-0:i386 (2.42.2+dfsg-1+deb11u1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../014-gtk-update-icon-cache_3.24.24-4+deb11u3_i386.deb ... Unpacking gtk-update-icon-cache (3.24.24-4+deb11u3) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../015-adwaita-icon-theme_3.38.0-1_all.deb ... Unpacking adwaita-icon-theme (3.38.0-1) ... Selecting previously unselected package aglfn. Preparing to unpack .../016-aglfn_1.7+git20191031.4036a9c-2_all.deb ... Unpacking aglfn (1.7+git20191031.4036a9c-2) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../017-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cython3. Preparing to unpack .../023-cython3_0.29.21-3+b1_i386.deb ... Unpacking cython3 (0.29.21-3+b1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../024-d-shlibs_0.98_all.deb ... Unpacking d-shlibs (0.98) ... Selecting previously unselected package dbus-user-session. Preparing to unpack .../025-dbus-user-session_1.12.28-0+deb11u1_i386.deb ... Unpacking dbus-user-session (1.12.28-0+deb11u1) ... Selecting previously unselected package libdconf1:i386. Preparing to unpack .../026-libdconf1_0.38.0-2_i386.deb ... Unpacking libdconf1:i386 (0.38.0-2) ... Selecting previously unselected package dconf-service. Preparing to unpack .../027-dconf-service_0.38.0-2_i386.deb ... Unpacking dconf-service (0.38.0-2) ... Selecting previously unselected package dconf-gsettings-backend:i386. Preparing to unpack .../028-dconf-gsettings-backend_0.38.0-2_i386.deb ... Unpacking dconf-gsettings-backend:i386 (0.38.0-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../029-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../030-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../031-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../032-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../033-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../034-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../035-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../036-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../037-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../038-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../039-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../040-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../041-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../042-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../043-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package fonts-gfs-baskerville. Preparing to unpack .../044-fonts-gfs-baskerville_1.1-6_all.deb ... Unpacking fonts-gfs-baskerville (1.1-6) ... Selecting previously unselected package fonts-gfs-porson. Preparing to unpack .../045-fonts-gfs-porson_1.1-7_all.deb ... Unpacking fonts-gfs-porson (1.1-7) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../046-fonts-lmodern_2.004.5-6.1_all.deb ... Unpacking fonts-lmodern (2.004.5-6.1) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../047-libgs9-common_9.53.3~dfsg-7+deb11u6_all.deb ... Unpacking libgs9-common (9.53.3~dfsg-7+deb11u6) ... Selecting previously unselected package libavahi-common-data:i386. Preparing to unpack .../048-libavahi-common-data_0.8-5+deb11u2_i386.deb ... Unpacking libavahi-common-data:i386 (0.8-5+deb11u2) ... Selecting previously unselected package libavahi-common3:i386. Preparing to unpack .../049-libavahi-common3_0.8-5+deb11u2_i386.deb ... Unpacking libavahi-common3:i386 (0.8-5+deb11u2) ... Selecting previously unselected package libavahi-client3:i386. Preparing to unpack .../050-libavahi-client3_0.8-5+deb11u2_i386.deb ... Unpacking libavahi-client3:i386 (0.8-5+deb11u2) ... Selecting previously unselected package libcups2:i386. Preparing to unpack .../051-libcups2_2.3.3op2-3+deb11u6_i386.deb ... Unpacking libcups2:i386 (2.3.3op2-3+deb11u6) ... Selecting previously unselected package libidn11:i386. Preparing to unpack .../052-libidn11_1.33-3_i386.deb ... Unpacking libidn11:i386 (1.33-3) ... Selecting previously unselected package libijs-0.35:i386. Preparing to unpack .../053-libijs-0.35_0.35-15_i386.deb ... Unpacking libijs-0.35:i386 (0.35-15) ... Selecting previously unselected package libjbig2dec0:i386. Preparing to unpack .../054-libjbig2dec0_0.19-2_i386.deb ... Unpacking libjbig2dec0:i386 (0.19-2) ... Selecting previously unselected package liblcms2-2:i386. Preparing to unpack .../055-liblcms2-2_2.12~rc1-2_i386.deb ... Unpacking liblcms2-2:i386 (2.12~rc1-2) ... Selecting previously unselected package libopenjp2-7:i386. Preparing to unpack .../056-libopenjp2-7_2.4.0-3_i386.deb ... Unpacking libopenjp2-7:i386 (2.4.0-3) ... Selecting previously unselected package libpaper1:i386. Preparing to unpack .../057-libpaper1_1.1.28+b1_i386.deb ... Unpacking libpaper1:i386 (1.1.28+b1) ... Selecting previously unselected package libgs9:i386. Preparing to unpack .../058-libgs9_9.53.3~dfsg-7+deb11u6_i386.deb ... Unpacking libgs9:i386 (9.53.3~dfsg-7+deb11u6) ... Selecting previously unselected package ghostscript. Preparing to unpack .../059-ghostscript_9.53.3~dfsg-7+deb11u6_i386.deb ... Unpacking ghostscript (9.53.3~dfsg-7+deb11u6) ... Selecting previously unselected package libproxy1v5:i386. Preparing to unpack .../060-libproxy1v5_0.4.17-1_i386.deb ... Unpacking libproxy1v5:i386 (0.4.17-1) ... Selecting previously unselected package glib-networking-common. Preparing to unpack .../061-glib-networking-common_2.66.0-2_all.deb ... Unpacking glib-networking-common (2.66.0-2) ... Selecting previously unselected package glib-networking-services. Preparing to unpack .../062-glib-networking-services_2.66.0-2_i386.deb ... Unpacking glib-networking-services (2.66.0-2) ... Selecting previously unselected package gsettings-desktop-schemas. Preparing to unpack .../063-gsettings-desktop-schemas_3.38.0-2_all.deb ... Unpacking gsettings-desktop-schemas (3.38.0-2) ... Selecting previously unselected package glib-networking:i386. Preparing to unpack .../064-glib-networking_2.66.0-2_i386.deb ... Unpacking glib-networking:i386 (2.66.0-2) ... Selecting previously unselected package gnuplot-data. Preparing to unpack .../065-gnuplot-data_5.4.1+dfsg1-1+deb11u1_all.deb ... Unpacking gnuplot-data (5.4.1+dfsg1-1+deb11u1) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../066-libpixman-1-0_0.40.0-1.1~deb11u1_i386.deb ... Unpacking libpixman-1-0:i386 (0.40.0-1.1~deb11u1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../067-libcairo2_1.16.0-5_i386.deb ... Unpacking libcairo2:i386 (1.16.0-5) ... Selecting previously unselected package libxpm4:i386. Preparing to unpack .../068-libxpm4_1%3a3.5.12-1.1~deb11u1_i386.deb ... Unpacking libxpm4:i386 (1:3.5.12-1.1~deb11u1) ... Selecting previously unselected package libgd3:i386. Preparing to unpack .../069-libgd3_2.3.0-2_i386.deb ... Unpacking libgd3:i386 (2.3.0-2) ... Selecting previously unselected package liblua5.4-0:i386. Preparing to unpack .../070-liblua5.4-0_5.4.2-2_i386.deb ... Unpacking liblua5.4-0:i386 (5.4.2-2) ... Selecting previously unselected package libfribidi0:i386. Preparing to unpack .../071-libfribidi0_1.0.8-2+deb11u1_i386.deb ... Unpacking libfribidi0:i386 (1.0.8-2+deb11u1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../072-libthai-data_0.1.28-3_all.deb ... Unpacking libthai-data (0.1.28-3) ... Selecting previously unselected package libdatrie1:i386. Preparing to unpack .../073-libdatrie1_0.2.13-1_i386.deb ... Unpacking libdatrie1:i386 (0.2.13-1) ... Selecting previously unselected package libthai0:i386. Preparing to unpack .../074-libthai0_0.1.28-3_i386.deb ... Unpacking libthai0:i386 (0.1.28-3) ... Selecting previously unselected package libpango-1.0-0:i386. Preparing to unpack .../075-libpango-1.0-0_1.46.2-3_i386.deb ... Unpacking libpango-1.0-0:i386 (1.46.2-3) ... Selecting previously unselected package libpangoft2-1.0-0:i386. Preparing to unpack .../076-libpangoft2-1.0-0_1.46.2-3_i386.deb ... Unpacking libpangoft2-1.0-0:i386 (1.46.2-3) ... Selecting previously unselected package libpangocairo-1.0-0:i386. Preparing to unpack .../077-libpangocairo-1.0-0_1.46.2-3_i386.deb ... Unpacking libpangocairo-1.0-0:i386 (1.46.2-3) ... Selecting previously unselected package libqt5printsupport5:i386. Preparing to unpack .../078-libqt5printsupport5_5.15.2+dfsg-9_i386.deb ... Unpacking libqt5printsupport5:i386 (5.15.2+dfsg-9) ... Selecting previously unselected package libwxbase3.0-0v5:i386. Preparing to unpack .../079-libwxbase3.0-0v5_3.0.5.1+dfsg-2_i386.deb ... Unpacking libwxbase3.0-0v5:i386 (3.0.5.1+dfsg-2) ... Selecting previously unselected package libgdk-pixbuf-xlib-2.0-0:i386. Preparing to unpack .../080-libgdk-pixbuf-xlib-2.0-0_2.40.2-2_i386.deb ... Unpacking libgdk-pixbuf-xlib-2.0-0:i386 (2.40.2-2) ... Selecting previously unselected package libgdk-pixbuf2.0-0:i386. Preparing to unpack .../081-libgdk-pixbuf2.0-0_2.40.2-2_i386.deb ... Unpacking libgdk-pixbuf2.0-0:i386 (2.40.2-2) ... Selecting previously unselected package libatk1.0-data. Preparing to unpack .../082-libatk1.0-data_2.36.0-2_all.deb ... Unpacking libatk1.0-data (2.36.0-2) ... Selecting previously unselected package libatk1.0-0:i386. Preparing to unpack .../083-libatk1.0-0_2.36.0-2_i386.deb ... Unpacking libatk1.0-0:i386 (2.36.0-2) ... Selecting previously unselected package libatspi2.0-0:i386. Preparing to unpack .../084-libatspi2.0-0_2.38.0-4+deb11u1_i386.deb ... Unpacking libatspi2.0-0:i386 (2.38.0-4+deb11u1) ... Selecting previously unselected package libatk-bridge2.0-0:i386. Preparing to unpack .../085-libatk-bridge2.0-0_2.38.0-1_i386.deb ... Unpacking libatk-bridge2.0-0:i386 (2.38.0-1) ... Selecting previously unselected package libcairo-gobject2:i386. Preparing to unpack .../086-libcairo-gobject2_1.16.0-5_i386.deb ... Unpacking libcairo-gobject2:i386 (1.16.0-5) ... Selecting previously unselected package libcolord2:i386. Preparing to unpack .../087-libcolord2_1.4.5-3_i386.deb ... Unpacking libcolord2:i386 (1.4.5-3) ... Selecting previously unselected package libepoxy0:i386. Preparing to unpack .../088-libepoxy0_1.5.5-1_i386.deb ... Unpacking libepoxy0:i386 (1.5.5-1) ... Selecting previously unselected package libjson-glib-1.0-common. Preparing to unpack .../089-libjson-glib-1.0-common_1.6.2-1_all.deb ... Unpacking libjson-glib-1.0-common (1.6.2-1) ... Selecting previously unselected package libjson-glib-1.0-0:i386. Preparing to unpack .../090-libjson-glib-1.0-0_1.6.2-1_i386.deb ... Unpacking libjson-glib-1.0-0:i386 (1.6.2-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../091-libpsl5_0.21.0-1.2_i386.deb ... Unpacking libpsl5:i386 (0.21.0-1.2) ... Selecting previously unselected package libsoup2.4-1:i386. Preparing to unpack .../092-libsoup2.4-1_2.72.0-2_i386.deb ... Unpacking libsoup2.4-1:i386 (2.72.0-2) ... Selecting previously unselected package libsoup-gnome2.4-1:i386. Preparing to unpack .../093-libsoup-gnome2.4-1_2.72.0-2_i386.deb ... Unpacking libsoup-gnome2.4-1:i386 (2.72.0-2) ... Selecting previously unselected package librest-0.7-0:i386. Preparing to unpack .../094-librest-0.7-0_0.8.1-1.1_i386.deb ... Unpacking librest-0.7-0:i386 (0.8.1-1.1) ... Selecting previously unselected package libwayland-cursor0:i386. Preparing to unpack .../095-libwayland-cursor0_1.18.0-2~exp1.1_i386.deb ... Unpacking libwayland-cursor0:i386 (1.18.0-2~exp1.1) ... Selecting previously unselected package libwayland-egl1:i386. Preparing to unpack .../096-libwayland-egl1_1.18.0-2~exp1.1_i386.deb ... Unpacking libwayland-egl1:i386 (1.18.0-2~exp1.1) ... Selecting previously unselected package libxcomposite1:i386. Preparing to unpack .../097-libxcomposite1_1%3a0.4.5-1_i386.deb ... Unpacking libxcomposite1:i386 (1:0.4.5-1) ... Selecting previously unselected package libxcursor1:i386. Preparing to unpack .../098-libxcursor1_1%3a1.2.0-2_i386.deb ... Unpacking libxcursor1:i386 (1:1.2.0-2) ... Selecting previously unselected package libxi6:i386. Preparing to unpack .../099-libxi6_2%3a1.7.10-1_i386.deb ... Unpacking libxi6:i386 (2:1.7.10-1) ... Selecting previously unselected package libxinerama1:i386. Preparing to unpack .../100-libxinerama1_2%3a1.1.4-2_i386.deb ... Unpacking libxinerama1:i386 (2:1.1.4-2) ... Selecting previously unselected package libxrandr2:i386. Preparing to unpack .../101-libxrandr2_2%3a1.5.1-1_i386.deb ... Unpacking libxrandr2:i386 (2:1.5.1-1) ... Selecting previously unselected package libgtk-3-common. Preparing to unpack .../102-libgtk-3-common_3.24.24-4+deb11u3_all.deb ... Unpacking libgtk-3-common (3.24.24-4+deb11u3) ... Selecting previously unselected package libgtk-3-0:i386. Preparing to unpack .../103-libgtk-3-0_3.24.24-4+deb11u3_i386.deb ... Unpacking libgtk-3-0:i386 (3.24.24-4+deb11u3) ... Selecting previously unselected package libnotify4:i386. Preparing to unpack .../104-libnotify4_0.7.9-3_i386.deb ... Unpacking libnotify4:i386 (0.7.9-3) ... Selecting previously unselected package libwxgtk3.0-gtk3-0v5:i386. Preparing to unpack .../105-libwxgtk3.0-gtk3-0v5_3.0.5.1+dfsg-2_i386.deb ... Unpacking libwxgtk3.0-gtk3-0v5:i386 (3.0.5.1+dfsg-2) ... Selecting previously unselected package gnuplot-qt. Preparing to unpack .../106-gnuplot-qt_5.4.1+dfsg1-1+deb11u1_i386.deb ... Unpacking gnuplot-qt (5.4.1+dfsg1-1+deb11u1) ... Selecting previously unselected package gnuplot. Preparing to unpack .../107-gnuplot_5.4.1+dfsg1-1+deb11u1_all.deb ... Unpacking gnuplot (5.4.1+dfsg1-1+deb11u1) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../108-libapache-pom-java_18-1_all.deb ... Unpacking libapache-pom-java (18-1) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../109-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../110-libcommons-logging-java_1.2-2_all.deb ... Unpacking libcommons-logging-java (1.2-2) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../111-libexpat1-dev_2.2.10-2+deb11u5_i386.deb ... Unpacking libexpat1-dev:i386 (2.2.10-2+deb11u5) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../112-libfontbox-java_1%3a1.8.16-2_all.deb ... Unpacking libfontbox-java (1:1.8.16-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../113-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../114-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../115-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package libkpathsea6:i386. Preparing to unpack .../116-libkpathsea6_2020.20200327.54578-7+deb11u1_i386.deb ... Unpacking libkpathsea6:i386 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../117-libpaper-utils_1.1.28+b1_i386.deb ... Unpacking libpaper-utils (1.1.28+b1) ... Selecting previously unselected package libpdfbox-java. Preparing to unpack .../118-libpdfbox-java_1%3a1.8.16-2_all.deb ... Unpacking libpdfbox-java (1:1.8.16-2) ... Selecting previously unselected package libptexenc1:i386. Preparing to unpack .../119-libptexenc1_2020.20200327.54578-7+deb11u1_i386.deb ... Unpacking libptexenc1:i386 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libpython3.9:i386. Preparing to unpack .../120-libpython3.9_3.9.2-1_i386.deb ... Unpacking libpython3.9:i386 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:i386. Preparing to unpack .../121-libpython3.9-dev_3.9.2-1_i386.deb ... Unpacking libpython3.9-dev:i386 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../122-libpython3-dev_3.9.2-3_i386.deb ... Unpacking libpython3-dev:i386 (3.9.2-3) ... Selecting previously unselected package libpython3-all-dev:i386. Preparing to unpack .../123-libpython3-all-dev_3.9.2-3_i386.deb ... Unpacking libpython3-all-dev:i386 (3.9.2-3) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../124-libsimde-dev_0.7.2-4_all.deb ... Unpacking libsimde-dev (0.7.2-4) ... Selecting previously unselected package libsynctex2:i386. Preparing to unpack .../125-libsynctex2_2020.20200327.54578-7+deb11u1_i386.deb ... Unpacking libsynctex2:i386 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libteckit0:i386. Preparing to unpack .../126-libteckit0_2.5.10+ds1-3_i386.deb ... Unpacking libteckit0:i386 (2.5.10+ds1-3) ... Selecting previously unselected package libtexlua53:i386. Preparing to unpack .../127-libtexlua53_2020.20200327.54578-7+deb11u1_i386.deb ... Unpacking libtexlua53:i386 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libtexluajit2:i386. Preparing to unpack .../128-libtexluajit2_2020.20200327.54578-7+deb11u1_i386.deb ... Unpacking libtexluajit2:i386 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libxt6:i386. Preparing to unpack .../129-libxt6_1%3a1.2.0-1_i386.deb ... Unpacking libxt6:i386 (1:1.2.0-1) ... Selecting previously unselected package libxmu6:i386. Preparing to unpack .../130-libxmu6_2%3a1.1.2-2+b3_i386.deb ... Unpacking libxmu6:i386 (2:1.1.2-2+b3) ... Selecting previously unselected package libxaw7:i386. Preparing to unpack .../131-libxaw7_2%3a1.0.13-1.1_i386.deb ... Unpacking libxaw7:i386 (2:1.0.13-1.1) ... Selecting previously unselected package libzzip-0-13:i386. Preparing to unpack .../132-libzzip-0-13_0.13.62-3.3+deb11u1_i386.deb ... Unpacking libzzip-0-13:i386 (0.13.62-3.3+deb11u1) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../133-preview-latex-style_12.2-1_all.deb ... Unpacking preview-latex-style (12.2-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../134-python3-all_3.9.2-3_i386.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../135-zlib1g-dev_1%3a1.2.11.dfsg-2+deb11u2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2+deb11u2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../136-python3.9-dev_3.9.2-1_i386.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../137-python3-dev_3.9.2-3_i386.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../138-python3-all-dev_3.9.2-3_i386.deb ... Unpacking python3-all-dev (3.9.2-3) ... Selecting previously unselected package t1utils. Preparing to unpack .../139-t1utils_1.41-4_i386.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../140-texlive-binaries_2020.20200327.54578-7+deb11u1_i386.deb ... Unpacking texlive-binaries (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../141-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../142-texlive-base_2020.20210202-3_all.deb ... Unpacking texlive-base (2020.20210202-3) ... Selecting previously unselected package texlive-font-utils. Preparing to unpack .../143-texlive-font-utils_2020.20210202-3_all.deb ... Unpacking texlive-font-utils (2020.20210202-3) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../144-texlive-fonts-recommended_2020.20210202-3_all.deb ... Unpacking texlive-fonts-recommended (2020.20210202-3) ... Selecting previously unselected package texlive-lang-greek. Preparing to unpack .../145-texlive-lang-greek_2020.20210202-2_all.deb ... Unpacking texlive-lang-greek (2020.20210202-2) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../146-texlive-latex-base_2020.20210202-3_all.deb ... Unpacking texlive-latex-base (2020.20210202-3) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../147-texlive-latex-recommended_2020.20210202-3_all.deb ... Unpacking texlive-latex-recommended (2020.20210202-3) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../148-texlive-pictures_2020.20210202-3_all.deb ... Unpacking texlive-pictures (2020.20210202-3) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../149-texlive-latex-extra_2020.20210202-3_all.deb ... Unpacking texlive-latex-extra (2020.20210202-3) ... Selecting previously unselected package texlive-science. Preparing to unpack .../150-texlive-science_2020.20210202-3_all.deb ... Unpacking texlive-science (2020.20210202-3) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up libgraphite2-3:i386 (1.3.14-1) ... Setting up libsimde-dev (0.7.2-4) ... Setting up liblcms2-2:i386 (2.12~rc1-2) ... Setting up libpixman-1-0:i386 (0.40.0-1.1~deb11u1) ... Setting up libwayland-server0:i386 (1.18.0-2~exp1.1) ... Setting up libpciaccess0:i386 (0.16-1) ... Setting up systemd-sysv (247.3-7+deb11u4) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libdouble-conversion3:i386 (3.1.5-6.1) ... Setting up libproxy1v5:i386 (0.4.17-1) ... Setting up libpsl5:i386 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up fonts-gfs-porson (1.1-7) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libicu67:i386 (67.1-7) ... Setting up libdatrie1:i386 (0.2.13-1) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libtexlua53:i386 (2020.20200327.54578-7+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.66.8-1) ... Setting up libglvnd0:i386 (1.3.2-1) ... Setting up libijs-0.35:i386 (0.35-15) ... Setting up libtexluajit2:i386 (2020.20200327.54578-7+deb11u1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Setting up x11-common (1:7.7+22) ... Running in chroot, ignoring request. Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-7) ... Setting up libmagic1:i386 (1:5.39-3+deb11u1) ... Setting up libdeflate0:i386 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up xkb-data (2.29-2) ... Setting up libzzip-0-13:i386 (0.13.62-3.3+deb11u1) ... Setting up file (1:5.39-3+deb11u1) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up libpcre2-16-0:i386 (10.36-2+deb11u1) ... Setting up libcolord2:i386 (1.4.5-3) ... Setting up poppler-data (0.4.10-1) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jan 13 21:18:26 UTC 2024. Universal Time is now: Sat Jan 13 21:18:26 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libdconf1:i386 (0.38.0-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:i386 (4.8.10-1) ... Setting up libexpat1-dev:i386 (2.2.10-2+deb11u5) ... Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u1) ... Setting up libepoxy0:i386 (1.5.5-1) ... Setting up libjbig2dec0:i386 (0.19-2) ... Setting up libidn11:i386 (1.33-3) ... Setting up libteckit0:i386 (2.5.10+ds1-3) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:i386 (0.8-5+deb11u2) ... Setting up libdbus-1-3:i386 (1.12.28-0+deb11u1) ... Setting up dbus (1.12.28-0+deb11u1) ... ERROR: ld.so: object 'libeatmydata.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsigsegv2:i386 (2.13-1) ... Setting up libfribidi0:i386 (1.0.8-2+deb11u1) ... Setting up t1utils (1.41-4) ... Setting up libpng16-16:i386 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:i386 (0.6.1-2.1+deb11u2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up d-shlibs (0.98) ... Setting up libsensors5:i386 (1:3.6.0-7) ... Setting up libglapi-mesa:i386 (20.3.5-1) ... Setting up libkpathsea6:i386 (2020.20200327.54578-7+deb11u1) ... Setting up libmtdev1:i386 (1.1.6-1) ... Setting up libvulkan1:i386 (1.2.162.0-1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libatk1.0-data (2.36.0-2) ... Setting up libmd0:i386 (1.0.3-3) ... Setting up fonts-gfs-baskerville (1.1-6) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:i386 (1.3-1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libpam-systemd:i386 (247.3-7+deb11u4) ... Setting up libmd4c0:i386 (0.4.7-2) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up liblua5.4-0:i386 (5.4.2-2) ... Setting up libopenjp2-7:i386 (2.4.0-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libthai-data (0.1.28-3) ... Setting up libwxbase3.0-0v5:i386 (3.0.5.1+dfsg-2) ... Setting up libjson-glib-1.0-common (1.6.2-1) ... Setting up libatk1.0-0:i386 (2.36.0-2) ... Setting up libtiff5:i386 (4.2.0-1+deb11u4) ... Setting up libwayland-egl1:i386 (1.18.0-2~exp1.1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up glib-networking-common (2.66.0-2) ... Setting up libbsd0:i386 (0.11.3-1+deb11u1) ... Setting up libdrm-common (2.4.104-1) ... Setting up libelf1:i386 (0.183-1) ... Setting up libevdev2:i386 (1.11.0+dfsg-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7+deb11u4) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libgudev-1.0-0:i386 (234-1) ... Setting up libsynctex2:i386 (2020.20200327.54578-7+deb11u1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libwacom-common (1.8-2) ... Setting up libxkbcommon0:i386 (1.0.3-2) ... Setting up libwayland-client0:i386 (1.18.0-2~exp1.1) ... Setting up libgs9-common (9.53.3~dfsg-7+deb11u6) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up glib-networking-services (2.66.0-2) ... Setting up gnuplot-data (5.4.1+dfsg1-1+deb11u1) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libxcb-xfixes0:i386 (1.14-3) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libxcb-xinput0:i386 (1.14-3) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:i386 (1.14-3) ... Setting up libxcb-glx0:i386 (1.14-3) ... Setting up libedit2:i386 (3.1-20191231-2+b1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libxcb-keysyms1:i386 (0.4.0-1+b2) ... Setting up libxcb-shape0:i386 (1.14-3) ... Setting up libavahi-common3:i386 (0.8-5+deb11u2) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-render-util0:i386 (0.3.9-1+b1) ... Setting up libxcb-shm0:i386 (1.14-3) ... Setting up libxcb-icccm4:i386 (0.4.1-1.1) ... Setting up libxcb-util1:i386 (0.4.0-1+b1) ... Setting up libjson-glib-1.0-0:i386 (1.6.2-1) ... Setting up libxcb-xkb1:i386 (1.14-3) ... Setting up libxcb-image0:i386 (0.4.0-1+b3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:i386 (1.14-3) ... Setting up libthai0:i386 (0.1.28-3) ... Setting up dbus-user-session (1.12.28-0+deb11u1) ... Setting up libxcb-xinerama0:i386 (1.14-3) ... Setting up libllvm11:i386 (1:11.0.1-2) ... Setting up libptexenc1:i386 (2020.20200327.54578-7+deb11u1) ... Setting up libfreetype6:i386 (2.10.4+dfsg-1+deb11u1) ... Setting up libxcb-sync1:i386 (1.14-3) ... Setting up shared-mime-info (2.0-1) ... Setting up libxkbcommon-x11-0:i386 (1.0.3-2) ... Setting up ucf (3.0043) ... Setting up libqt5core5a:i386 (5.15.2+dfsg-9) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up libxcb-dri2-0:i386 (1.14-3) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libdrm2:i386 (2.4.104-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libqt5dbus5:i386 (5.15.2+dfsg-9) ... Setting up libwayland-cursor0:i386 (1.18.0-2~exp1.1) ... Setting up libxcb-randr0:i386 (1.14-3) ... Setting up libx11-6:i386 (2:1.7.2-1+deb11u1) ... Setting up libharfbuzz0b:i386 (2.7.4-1) ... Setting up libgdk-pixbuf-2.0-0:i386 (2.42.2+dfsg-1+deb11u1) ... Setting up libwacom2:i386 (1.8-2) ... Setting up libxcomposite1:i386 (1:0.4.5-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libavahi-client3:i386 (0.8-5+deb11u2) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up libdrm-amdgpu1:i386 (2.4.104-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:i386 (1.14-3) ... Setting up libpaper1:i386 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up gtk-update-icon-cache (3.24.24-4+deb11u3) ... Setting up libx11-xcb1:i386 (2:1.7.2-1+deb11u1) ... Setting up libdrm-nouveau2:i386 (2.4.104-1) ... Setting up libxdamage1:i386 (1:1.1.5-2) ... Setting up libgdk-pixbuf-xlib-2.0-0:i386 (2.40.2-2) ... Setting up libxpm4:i386 (1:3.5.12-1.1~deb11u1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libgbm1:i386 (20.3.5-1) ... Setting up libdrm-radeon1:i386 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:i386 (2.4.104-1) ... Setting up libgl1-mesa-dri:i386 (20.3.5-1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up dconf-service (0.38.0-2) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up libatspi2.0-0:i386 (2.38.0-4+deb11u1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer. Setting up libqt5network5:i386 (5.15.2+dfsg-9) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.16.4-3) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libatk-bridge2.0-0:i386 (2.38.0-1) ... Setting up libegl-mesa0:i386 (20.3.5-1) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up adwaita-icon-theme (3.38.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:i386 (1:5.0.3-2) ... Setting up libnotify4:i386 (0.7.9-3) ... Setting up libgdk-pixbuf2.0-0:i386 (2.40.2-2) ... Setting up libxinerama1:i386 (2:1.1.4-2) ... Setting up libxrandr2:i386 (2:1.5.1-1) ... Setting up libxt6:i386 (1:1.2.0-1) ... Setting up libcups2:i386 (2.3.3op2-3+deb11u6) ... Setting up libegl1:i386 (1.3.2-1) ... Setting up libfontconfig1:i386 (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up libinput10:i386 (1.16.4-3) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxmu6:i386 (2:1.1.2-2+b3) ... Setting up libglx-mesa0:i386 (20.3.5-1) ... Setting up libgs9:i386 (9.53.3~dfsg-7+deb11u6) ... Setting up libxi6:i386 (2:1.7.10-1) ... Setting up libglx0:i386 (1.3.2-1) ... Setting up dconf-gsettings-backend:i386 (0.38.0-2) ... Setting up preview-latex-style (12.2-1) ... Setting up libxcursor1:i386 (1:1.2.0-2) ... Setting up libpango-1.0-0:i386 (1.46.2-3) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libxaw7:i386 (2:1.0.13-1.1) ... Setting up ghostscript (9.53.3~dfsg-7+deb11u6) ... Setting up libcairo2:i386 (1.16.0-5) ... Setting up libgl1:i386 (1.3.2-1) ... Setting up libgd3:i386 (2.3.0-2) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up texlive-binaries (2020.20200327.54578-7+deb11u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libcairo-gobject2:i386 (1.16.0-5) ... Setting up libpangoft2-1.0-0:i386 (1.46.2-3) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgtk-3-common (3.24.24-4+deb11u3) ... Setting up libpangocairo-1.0-0:i386 (1.46.2-3) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up gsettings-desktop-schemas (3.38.0-2) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up libqt5gui5:i386 (5.15.2+dfsg-9) ... Setting up python3-all (3.9.2-3) ... Setting up libqt5widgets5:i386 (5.15.2+dfsg-9) ... Setting up texlive-lang-greek (2020.20210202-2) ... Setting up texlive-font-utils (2020.20210202-3) ... Setting up libqt5printsupport5:i386 (5.15.2+dfsg-9) ... Setting up texlive-latex-base (2020.20210202-3) ... Setting up libpython3-all-dev:i386 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up texlive-fonts-recommended (2020.20210202-3) ... Setting up glib-networking:i386 (2.66.0-2) ... Setting up python3-all-dev (3.9.2-3) ... Setting up libsoup2.4-1:i386 (2.72.0-2) ... Setting up texlive-science (2020.20210202-3) ... Setting up libqt5svg5:i386 (5.15.2-3) ... Setting up texlive-latex-extra (2020.20210202-3) ... Setting up libsoup-gnome2.4-1:i386 (2.72.0-2) ... Setting up librest-0.7-0:i386 (0.8.1-1.1) ... Setting up libgtk-3-0:i386 (3.24.24-4+deb11u3) ... Setting up libwxgtk3.0-gtk3-0v5:i386 (3.0.5.1+dfsg-2) ... Setting up gnuplot-qt (5.4.1+dfsg1-1+deb11u1) ... update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up gnuplot (5.4.1+dfsg1-1+deb11u1) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/15871/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for bullseye I: user script /srv/workspace/pbuilder/15871/tmp/hooks/A99_set_merged_usr finished I: Running cd /build/reproducible-path/minimap2-2.17+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../minimap2_2.17+dfsg-12_source.changes dpkg-buildpackage: info: source package minimap2 dpkg-buildpackage: info: source version 2.17+dfsg-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_auto_clean make -j7 clean make[2]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' rm -fr gmon.out *.o a.out minimap2 sdust minimap2-lite *~ *.a *.dSYM build dist mappy*.so mappy.c python/mappy.c mappy.egg* make[2]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' rm -f MT-human.mmi rm -f tex/minimap2.aux tex/minimap2.bbl tex/minimap2.blg tex/minimap2.log tex/minimap2.out tex/minimap2.pdf rm -f libminimap2.a make[1]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' dh_clean debian/rules binary debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' dh binary --with python3 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_auto_build -- make -j7 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC main.c -o main.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC kthread.c -o kthread.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC kalloc.c -o kalloc.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC misc.c -o misc.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC bseq.c -o bseq.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC sketch.c -o sketch.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC sdust.c -o sdust.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC options.c -o options.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC index.c -o index.o index.c: In function 'mm_idx_load': index.c:495:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 495 | fread(&l, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~ index.c:498:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 498 | fread(s->name, 1, l, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:501:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 501 | fread(&s->len, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:510:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 510 | fread(&b->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:512:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 512 | fread(b->p, 8, b->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:513:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 513 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:520:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 520 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ index.c:528:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 528 | fread(mi->S, 4, (sum_len + 7) / 8, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC chain.c -o chain.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC align.c -o align.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC hit.c -o hit.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC map.c -o map.o map.c: In function 'mm_map_frag': map.c:380:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d map.c:380:49: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d map.c:380:61: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC format.c -o format.o format.c: In function 'mm_write_sam3': format.c:391:36: warning: variable 'this_rev' set but not used [-Wunused-but-set-variable] 391 | int this_rid = -1, this_pos = -1, this_rev = 0; | ^~~~~~~~ hit.c: In function 'mm_gen_regs': hit.c:74:18: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 74 | r = (mm_reg1_t*)calloc(n_u, sizeof(mm_reg1_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from hit.c:2: /usr/include/stdlib.h:542:14: note: in a call to allocation function 'calloc' declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC pe.c -o pe.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC esterr.c -o esterr.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC splitidx.c -o splitidx.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_ll_sse.c -o ksw2_ll_sse.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_extz2_sse.c -o ksw2_extz2_sse.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_extd2_sse.c -o ksw2_extd2_sse.o cc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_exts2_sse.c -o ksw2_exts2_sse.o rm -f libminimap2.a ar csrD libminimap2.a kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o chain.o align.o hit.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o ksw2_extz2_sse.o ksw2_extd2_sse.o ksw2_exts2_sse.o cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat main.o -o minimap2 -L. -lminimap2 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' cd tex && make make[2]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg/tex' gnuplot roc.gp epstopdf --outfile roc-color.pdf roc-color.eps pdflatex minimap2; bibtex minimap2; pdflatex minimap2; pdflatex minimap2; This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./minimap2.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (./bioinfo.cls Document Class: bioinfo 2003/02/08 0.1 (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/crop/crop.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/sttools/flushend.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)) (/usr/share/texlive/texmf-dist/tex/latex/sttools/stfloats.sty) (/usr/share/texlive/texmf-dist/tex/latex/amscls/amsthm.sty) (/usr/share/texlive/texmf-dist/tex/latex/changepage/chngpage.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/algorithm2e/algorithm2e.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/relsize/relsize.sty)) (/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file minimap2.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) Underfull \hbox (badness 10000) detected at line 27 [] (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) Underfull \hbox (badness 1014) in paragraph at lines 36--47 \OT1/phv/b/n/8 Results: \OT1/phv/m/n/8 Minimap2 is a general-purpose alignment program to LaTeX Font Warning: Font shape `OT1/cmr/m/n' in size <6.5> not available (Font) size <6> substituted on input line 58. LaTeX Font Warning: Font shape `OML/cmm/m/it' in size <6.5> not available (Font) size <6> substituted on input line 58. LaTeX Font Warning: Font shape `OMS/cmsy/m/n' in size <6.5> not available (Font) size <6> substituted on input line 58. Package natbib Warning: Citation `Chaisson:2012aa' on page 1 undefined on input line 59. Package natbib Warning: Citation `Li:2013aa' on page 1 undefined on input line 59. Package natbib Warning: Citation `Liu:2016ab' on page 1 undefined on input line 59. Package natbib Warning: Citation `Sovic:2016aa' on page 1 undefined on input li ne 59. Package natbib Warning: Citation `Liu:2017aa' on page 1 undefined on input line 59. Package natbib Warning: Citation `Lin:2017aa' on page 1 undefined on input line 59. Package natbib Warning: Citation `Sedlazeck169557' on page 1 undefined on input line 59. Package natbib Warning: Citation `Langmead:2012fk' on page 1 undefined on input line 61. Package natbib Warning: Citation `Li:2013aa' on page 1 undefined on input line 61. Package natbib Warning: Citation `Li:2016aa' on page 1 undefined on input line 66. Package natbib Warning: Citation `Suzuki:2018aa' on page 1 undefined on input l ine 67. Package natbib Warning: Citation `Wu:2005vn' on page 1 undefined on input line 72. Package natbib Warning: Citation `Iwata:2012aa' on page 1 undefined on input li ne 72. Package natbib Warning: Citation `Roberts:2004fv' on page 1 undefined on input line 90. Package natbib Warning: Citation `Li:2016aa' on page 1 undefined on input line 101. LaTeX Warning: Reference `eq:chain' on page 1 undefined on input line 131. Package natbib Warning: Citation `Abouelhoda:2005aa' on page 1 undefined on inp ut line 132. LaTeX Warning: Reference `eq:chain' on page 1 undefined on input line 138. Package natbib Warning: Citation `Li:2010fk' on page 1 undefined on input line 155. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] LaTeX Warning: Reference `sec:long-genomic' on page 2 undefined on input line 2 01. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 204. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 204. Package natbib Warning: Citation `Berlin:2015xy' on page 2 undefined on input l ine 217. Package natbib Warning: Citation `Gotoh:1990aa' on page 2 undefined on input li ne 229. LaTeX Warning: Reference `eq:ae86' on page 2 undefined on input line 250. Package natbib Warning: Citation `Gotoh:1982aa' on page 2 undefined on input li ne 251. Package natbib Warning: Citation `Altschul:1986aa' on page 2 undefined on input line 251. Package natbib Warning: Citation `Farrar:2007hs' on page 2 undefined on input l ine 257. LaTeX Warning: Reference `eq:ae86' on page 2 undefined on input line 258. Package natbib Warning: Citation `Wu:1996aa' on page 2 undefined on input line 261. Package natbib Warning: Citation `Suzuki:2018aa' on page 2 undefined on input l ine 261. LaTeX Warning: Reference `eq:ae86' on page 2 undefined on input line 271. LaTeX Warning: Reference `eq:suzuki' on page 2 undefined on input line 286. LaTeX Warning: Reference `eq:suzuki' on page 2 undefined on input line 305. LaTeX Warning: Reference `eq:suzuki' on page 2 undefined on input line 313. Package natbib Warning: Citation `Farrar:2007hs' on page 2 undefined on input l ine 329. Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [2] LaTeX Warning: Reference `eq:ae86' on page 3 undefined on input line 349. LaTeX Warning: Reference `eq:suzuki' on page 3 undefined on input line 356. Package natbib Warning: Citation `Daily:2016aa' on page 3 undefined on input li ne 359. Package natbib Warning: Citation `Sosic:2017aa' on page 3 undefined on input li ne 360. Package natbib Warning: Citation `Altschul:1997vn' on page 3 undefined on input line 379. Underfull \hbox (badness 1769) in paragraph at lines 382--386 \OT1/ptm/m/n/8 performs local alignment between the two subsequences involved i n LaTeX Warning: Reference `eq:chain-gap' on page 3 undefined on input line 401. Package natbib Warning: Citation `Irimia:2008aa' on page 3 undefined on input l ine 436. LaTeX Warning: Reference `eq:splice' on page 3 undefined on input line 442. Package natbib Warning: Citation `Zhang:2006aa' on page 3 undefined on input li ne 443. LaTeX Warning: Reference `sec:primary' on page 3 undefined on input line 472. LaTeX Warning: Reference `sec:genomic' on page 3 undefined on input line 474. Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active [3] LaTeX Font Warning: Font shape `OT1/cmtt/m/n' in size <6.5> not available (Font) size <6> substituted on input line 492. Overfull \hbox (9.0pt too wide) in paragraph at lines 496--515 [][] Package natbib Warning: Citation `Ono:2013aa' on page 4 undefined on input line 515. Package natbib Warning: Citation `Holtgrewe:2010aa' on page 4 undefined on inpu t line 515. Package natbib Warning: Citation `Chaisson:2012aa' on page 4 undefined on input line 519. Package natbib Warning: Citation `Li:2013aa' on page 4 undefined on input line 520. Package natbib Warning: Citation `Sovic:2016aa' on page 4 undefined on input li ne 521. Package natbib Warning: Citation `Lin:2017aa' on page 4 undefined on input line 522. Package natbib Warning: Citation `Sedlazeck169557' on page 4 undefined on input line 524. Package natbib Warning: Citation `Liu:2016ab' on page 4 undefined on input line 524. Package natbib Warning: Citation `Liu:2017aa' on page 4 undefined on input line 525. LaTeX Warning: Reference `fig:eval' on page 4 undefined on input line 528. Package natbib Warning: Citation `Jain128835' on page 4 undefined on input line 539. Package natbib Warning: Citation `Robinson:2011aa' on page 4 undefined on input line 541. Package natbib Warning: Citation `Sedlazeck169557' on page 4 undefined on input line 542. Package natbib Warning: Citation `Byrne:2017aa' on page 4 undefined on input li ne 549. Package natbib Warning: Citation `Irimia:2008aa' on page 4 undefined on input l ine 558. Package natbib Warning: Citation `Li:2009ys' on page 4 undefined on input line 587. Package natbib Warning: Citation `Byrne:2017aa' on page 4 undefined on input li ne 590. Package natbib Warning: Citation `Wu:2005vn' on page 4 undefined on input line 591. Package natbib Warning: Citation `Iwata:2012aa' on page 4 undefined on input li ne 591. Package natbib Warning: Citation `Dobin:2013kx' on page 4 undefined on input li ne 592. LaTeX Warning: Reference `tab:intron' on page 4 undefined on input line 593. LaTeX Warning: Reference `tab:intron' on page 4 undefined on input line 609. Underfull \hbox (badness 4634) in paragraph at lines 598--610 \OT1/ptm/m/n/9 Direct RNA-seq dataset ([]http://bit.ly/na12878ont[]). Minimap2 Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [4 <./roc-color.pdf>] Package natbib Warning: Citation `Langmead:2012fk' on page 5 undefined on input line 637. Package natbib Warning: Citation `Zaharia:2011aa' on page 5 undefined on input line 638. LaTeX Warning: Reference `fig:eval' on page 5 undefined on input line 641. Package natbib Warning: Citation `Depristo:2011vn' on page 5 undefined on input line 649. Package natbib Warning: Citation `Li223297' on page 5 undefined on input line 6 53. Package natbib Warning: Citation `Marcais:2018aa' on page 5 undefined on input line 664. LaTeX Warning: Reference `fig:eval' on page 5 undefined on input line 694. Underfull \hbox (badness 2027) in paragraph at lines 687--700 []\OT1/ptm/m/n/9 The capability of minimap2 comes from a fast base-level Underfull \hbox (badness 1226) in paragraph at lines 714--719 \OT1/ptm/m/n/9 releasing their masterpiece and insightful notes before formal Package hyperref Warning: Difference (3) between bookmark levels is greater (hyperref) than one, level fixed on input line 720. No file minimap2.bbl. Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [5] Package natbib Warning: There were undefined citations. (./minimap2.aux) LaTeX Font Warning: Size substitutions with differences (Font) up to 0.5pt have occurred. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `minimap2.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on minimap2.pdf (5 pages, 238523 bytes). Transcript written on minimap2.log. This is BibTeX, Version 0.99d (TeX Live 2020/Debian) The top-level auxiliary file: minimap2.aux The style file: apalike.bst Database file #1: minimap2.bib This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./minimap2.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (./bioinfo.cls Document Class: bioinfo 2003/02/08 0.1 (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/crop/crop.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/sttools/flushend.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)) (/usr/share/texlive/texmf-dist/tex/latex/sttools/stfloats.sty) (/usr/share/texlive/texmf-dist/tex/latex/amscls/amsthm.sty) (/usr/share/texlive/texmf-dist/tex/latex/changepage/chngpage.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/algorithm2e/algorithm2e.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/relsize/relsize.sty)) (/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./minimap2.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./minimap2.out) (./minimap2.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) Underfull \hbox (badness 10000) detected at line 27 [] (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) Underfull \hbox (badness 1014) in paragraph at lines 36--47 \OT1/phv/b/n/8 Results: \OT1/phv/m/n/8 Minimap2 is a general-purpose alignment program to LaTeX Font Warning: Font shape `OT1/cmr/m/n' in size <6.5> not available (Font) size <6> substituted on input line 58. LaTeX Font Warning: Font shape `OML/cmm/m/it' in size <6.5> not available (Font) size <6> substituted on input line 58. LaTeX Font Warning: Font shape `OMS/cmsy/m/n' in size <6.5> not available (Font) size <6> substituted on input line 58. Package natbib Warning: Citation `Chaisson:2012aa' on page 1 undefined on input line 59. Package natbib Warning: Citation `Li:2013aa' on page 1 undefined on input line 59. Package natbib Warning: Citation `Liu:2016ab' on page 1 undefined on input line 59. Package natbib Warning: Citation `Sovic:2016aa' on page 1 undefined on input li ne 59. Package natbib Warning: Citation `Liu:2017aa' on page 1 undefined on input line 59. Package natbib Warning: Citation `Lin:2017aa' on page 1 undefined on input line 59. Package natbib Warning: Citation `Sedlazeck169557' on page 1 undefined on input line 59. Package natbib Warning: Citation `Langmead:2012fk' on page 1 undefined on input line 61. Package natbib Warning: Citation `Li:2013aa' on page 1 undefined on input line 61. Package natbib Warning: Citation `Li:2016aa' on page 1 undefined on input line 66. Package natbib Warning: Citation `Suzuki:2018aa' on page 1 undefined on input l ine 67. Package natbib Warning: Citation `Wu:2005vn' on page 1 undefined on input line 72. Package natbib Warning: Citation `Iwata:2012aa' on page 1 undefined on input li ne 72. Package natbib Warning: Citation `Roberts:2004fv' on page 1 undefined on input line 90. Package natbib Warning: Citation `Li:2016aa' on page 1 undefined on input line 101. Package natbib Warning: Citation `Abouelhoda:2005aa' on page 1 undefined on inp ut line 132. Package natbib Warning: Citation `Li:2010fk' on page 1 undefined on input line 155. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 204. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 204. Package natbib Warning: Citation `Berlin:2015xy' on page 2 undefined on input l ine 217. Package natbib Warning: Citation `Gotoh:1990aa' on page 2 undefined on input li ne 229. Package natbib Warning: Citation `Gotoh:1982aa' on page 2 undefined on input li ne 251. Package natbib Warning: Citation `Altschul:1986aa' on page 2 undefined on input line 251. Package natbib Warning: Citation `Farrar:2007hs' on page 2 undefined on input l ine 257. Package natbib Warning: Citation `Wu:1996aa' on page 2 undefined on input line 261. Package natbib Warning: Citation `Suzuki:2018aa' on page 2 undefined on input l ine 261. Package natbib Warning: Citation `Farrar:2007hs' on page 2 undefined on input l ine 329. Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [2] Package natbib Warning: Citation `Daily:2016aa' on page 3 undefined on input li ne 359. Package natbib Warning: Citation `Sosic:2017aa' on page 3 undefined on input li ne 360. Package natbib Warning: Citation `Altschul:1997vn' on page 3 undefined on input line 379. Underfull \hbox (badness 1769) in paragraph at lines 382--386 \OT1/ptm/m/n/8 performs local alignment between the two subsequences involved i n Package natbib Warning: Citation `Irimia:2008aa' on page 3 undefined on input l ine 436. Package natbib Warning: Citation `Zhang:2006aa' on page 3 undefined on input li ne 443. Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active [3] LaTeX Font Warning: Font shape `OT1/cmtt/m/n' in size <6.5> not available (Font) size <6> substituted on input line 492. Overfull \hbox (9.0pt too wide) in paragraph at lines 496--515 [][] Package natbib Warning: Citation `Ono:2013aa' on page 4 undefined on input line 515. Package natbib Warning: Citation `Holtgrewe:2010aa' on page 4 undefined on inpu t line 515. Package natbib Warning: Citation `Chaisson:2012aa' on page 4 undefined on input line 519. Package natbib Warning: Citation `Li:2013aa' on page 4 undefined on input line 520. Package natbib Warning: Citation `Sovic:2016aa' on page 4 undefined on input li ne 521. Package natbib Warning: Citation `Lin:2017aa' on page 4 undefined on input line 522. Package natbib Warning: Citation `Sedlazeck169557' on page 4 undefined on input line 524. Package natbib Warning: Citation `Liu:2016ab' on page 4 undefined on input line 524. Package natbib Warning: Citation `Liu:2017aa' on page 4 undefined on input line 525. Package natbib Warning: Citation `Jain128835' on page 4 undefined on input line 539. Package natbib Warning: Citation `Robinson:2011aa' on page 4 undefined on input line 541. Package natbib Warning: Citation `Sedlazeck169557' on page 4 undefined on input line 542. Package natbib Warning: Citation `Byrne:2017aa' on page 4 undefined on input li ne 549. Package natbib Warning: Citation `Irimia:2008aa' on page 4 undefined on input l ine 558. Package natbib Warning: Citation `Li:2009ys' on page 4 undefined on input line 587. Package natbib Warning: Citation `Byrne:2017aa' on page 4 undefined on input li ne 590. Package natbib Warning: Citation `Wu:2005vn' on page 4 undefined on input line 591. Package natbib Warning: Citation `Iwata:2012aa' on page 4 undefined on input li ne 591. Package natbib Warning: Citation `Dobin:2013kx' on page 4 undefined on input li ne 592. Underfull \hbox (badness 4634) in paragraph at lines 598--610 \OT1/ptm/m/n/9 Direct RNA-seq dataset ([]http://bit.ly/na12878ont[]). Minimap2 Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [4 <./roc-color.pdf>] Package natbib Warning: Citation `Langmead:2012fk' on page 5 undefined on input line 637. Package natbib Warning: Citation `Zaharia:2011aa' on page 5 undefined on input line 638. Package natbib Warning: Citation `Depristo:2011vn' on page 5 undefined on input line 649. Package natbib Warning: Citation `Li223297' on page 5 undefined on input line 6 53. Package natbib Warning: Citation `Marcais:2018aa' on page 5 undefined on input line 664. Underfull \hbox (badness 2027) in paragraph at lines 687--700 []\OT1/ptm/m/n/9 The capability of minimap2 comes from a fast base-level Underfull \hbox (badness 1226) in paragraph at lines 714--719 \OT1/ptm/m/n/9 releasing their masterpiece and insightful notes before formal Package hyperref Warning: Difference (3) between bookmark levels is greater (hyperref) than one, level fixed on input line 720. (./minimap2.bbl Underfull \hbox (badness 1642) in paragraph at lines 20--24 []\OT1/ptm/m/n/9 Berlin, K. et al. (2015). Assembling large genomes with Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active [5] Underfull \hbox (badness 2635) in paragraph at lines 32--36 []\OT1/ptm/m/n/9 Chaisson, M. J. and Tesler, G. (2012). Mapping single Underfull \hbox (badness 10000) in paragraph at lines 55--59 \OT1/ptm/m/n/9 searches six times over other SIMD implementations. Underfull \hbox (badness 5578) in paragraph at lines 90--95 \OT1/ptm/m/n/9 of a human genome with ultra-long reads. \OT1/ptm/m/it/9 bioRxi v\OT1/ptm/m/n/9 . Underfull \vbox (badness 10000) has occurred while \output is active) Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [6] Package natbib Warning: There were undefined citations. (./minimap2.aux Package natbib Warning: Citation(s) may have changed. (natbib) Rerun to get citations correct. ) LaTeX Font Warning: Size substitutions with differences (Font) up to 0.5pt have occurred. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on minimap2.pdf (6 pages, 249712 bytes). Transcript written on minimap2.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./minimap2.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (./bioinfo.cls Document Class: bioinfo 2003/02/08 0.1 (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/crop/crop.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/sttools/flushend.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)) (/usr/share/texlive/texmf-dist/tex/latex/sttools/stfloats.sty) (/usr/share/texlive/texmf-dist/tex/latex/amscls/amsthm.sty) (/usr/share/texlive/texmf-dist/tex/latex/changepage/chngpage.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/algorithm2e/algorithm2e.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/relsize/relsize.sty)) (/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./minimap2.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./minimap2.out) (./minimap2.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) Underfull \hbox (badness 10000) detected at line 27 [] (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) Underfull \hbox (badness 1014) in paragraph at lines 36--47 \OT1/phv/b/n/8 Results: \OT1/phv/m/n/8 Minimap2 is a general-purpose alignment program to LaTeX Font Warning: Font shape `OT1/cmr/m/n' in size <6.5> not available (Font) size <6> substituted on input line 58. LaTeX Font Warning: Font shape `OML/cmm/m/it' in size <6.5> not available (Font) size <6> substituted on input line 58. LaTeX Font Warning: Font shape `OMS/cmsy/m/n' in size <6.5> not available (Font) size <6> substituted on input line 58. Underfull \hbox (badness 1478) in paragraph at lines 71--80 \OT1/ptm/m/n/9 minor modifications could enable the base algorithm to map Underfull \hbox (badness 1019) in paragraph at lines 71--80 \OT1/ptm/m/n/9 mRNAs as well. Minimap2 becomes a first RNA-seq aligner [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 204. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 204. Underfull \vbox (badness 10000) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [2] Underfull \hbox (badness 1769) in paragraph at lines 382--386 \OT1/ptm/m/n/8 performs local alignment between the two subsequences involved i n Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active [3] LaTeX Font Warning: Font shape `OT1/cmtt/m/n' in size <6.5> not available (Font) size <6> substituted on input line 492. Overfull \hbox (9.0pt too wide) in paragraph at lines 496--515 [][] Underfull \hbox (badness 1248) in paragraph at lines 518--535 []\OT1/ptm/m/n/9 2016[]), Kart (v2.2.5; []Lin and Hsu[], []2017[]), minialign ( v0.5.3; Overfull \hbox (3.90332pt too wide) in paragraph at lines 518--535 []\OT1/ptm/m/n/9 https://github.com/ocxtal/minialign[]) and NGMLR (v0.2.5; []Se dlazeck Underfull \hbox (badness 2189) in paragraph at lines 590--597 \OT1/ptm/m/n/9 GMAP (v2017-06-20; []Wu and Watanabe[], []2005[]), minimap2, Underfull \hbox (badness 1424) in paragraph at lines 590--597 \OT1/ptm/m/n/9 et al.[], []2013[]). In general, minimap2 is more consistent wit h Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [4 <./roc-color.pdf>] Underfull \hbox (badness 4634) in paragraph at lines 598--610 \OT1/ptm/m/n/9 Direct RNA-seq dataset ([]http://bit.ly/na12878ont[]). Minimap2 Underfull \hbox (badness 2096) in paragraph at lines 647--659 \OT1/ptm/m/n/9 v3.5 ([]Depristo et al.[], []2011[]). This run was sequenced fro m Underfull \hbox (badness 1454) in paragraph at lines 662--671 \OT1/ptm/m/n/9 the paftools.js script from the minimap2 package, we called Underfull \hbox (badness 1137) in paragraph at lines 662--671 \OT1/ptm/m/n/9 regions. The transition-to-transversion ratio (ts/tv) is 2.01. I n Underfull \hbox (badness 2027) in paragraph at lines 687--700 []\OT1/ptm/m/n/9 The capability of minimap2 comes from a fast base-level Underfull \hbox (badness 1226) in paragraph at lines 714--719 \OT1/ptm/m/n/9 releasing their masterpiece and insightful notes before formal Package hyperref Warning: Difference (3) between bookmark levels is greater (hyperref) than one, level fixed on input line 720. (./minimap2.bbl Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \vbox (1.0pt too high) has occurred while \output is active [5] Underfull \hbox (badness 1642) in paragraph at lines 20--24 []\OT1/ptm/m/n/9 Berlin, K. et al. (2015). Assembling large genomes with Underfull \hbox (badness 2635) in paragraph at lines 32--36 []\OT1/ptm/m/n/9 Chaisson, M. J. and Tesler, G. (2012). Mapping single Underfull \hbox (badness 10000) in paragraph at lines 55--59 \OT1/ptm/m/n/9 searches six times over other SIMD implementations. Underfull \hbox (badness 5578) in paragraph at lines 90--95 \OT1/ptm/m/n/9 of a human genome with ultra-long reads. \OT1/ptm/m/it/9 bioRxi v\OT1/ptm/m/n/9 . Underfull \vbox (badness 10000) has occurred while \output is active) Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] Overfull \hbox (261.0pt too wide) has occurred while \output is active [][] [6] (./minimap2.aux) LaTeX Font Warning: Size substitutions with differences (Font) up to 0.5pt have occurred. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on minimap2.pdf (6 pages, 253336 bytes). Transcript written on minimap2.log. make[2]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg/tex' dh_auto_build --buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_ext cythoning python/mappy.pyx to python/mappy.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/minimap2-2.17+dfsg/python/mappy.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'mappy' extension creating build creating build/temp.linux-i386-3.9 creating build/temp.linux-i386-3.9/python i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c align.c -o build/temp.linux-i386-3.9/align.o -DHAVE_KALLOC align.c: In function 'mm_get_hplen_back': align.c:346:29: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 346 | if (mm_seq4_get(mi->S, i) != c) break; | ^~ align.c: In function 'mm_seed_ext_score': align.c:533:49: warning: operand of '?:' changes signedness from 'int' to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare] 533 | re = re + ext_len < (int32_t)mi->seq[rid].len? re + ext_len : mi->seq[rid].len; | ^~~~~~~~~~~~ align.c: In function 'mm_align1': align.c:620:45: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare] 620 | re0 = re + l < (int32_t)mi->seq[rid].len? re + l : mi->seq[rid].len; | ^~~~~~ align.c:672:44: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare] 672 | l = l < (int32_t)mi->seq[rid].len - re? l : mi->seq[rid].len - re; | ^ i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c bseq.c -o build/temp.linux-i386-3.9/bseq.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c chain.c -o build/temp.linux-i386-3.9/chain.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c esterr.c -o build/temp.linux-i386-3.9/esterr.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c format.c -o build/temp.linux-i386-3.9/format.o -DHAVE_KALLOC format.c: In function 'mm_event_identity': format.c:268:16: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 268 | for (i = 0; i < r->p->n_cigar; ++i) { | ^ format.c: In function 'mm_write_sam3': format.c:391:36: warning: variable 'this_rev' set but not used [-Wunused-but-set-variable] 391 | int this_rid = -1, this_pos = -1, this_rev = 0; | ^~~~~~~~ i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c hit.c -o build/temp.linux-i386-3.9/hit.o -DHAVE_KALLOC hit.c: In function 'mm_hit_sort': hit.c:171:48: warning: variable 'no_cigar' set but not used [-Wunused-but-set-variable] 171 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0; | ^~~~~~~~ hit.c:171:33: warning: variable 'has_cigar' set but not used [-Wunused-but-set-variable] 171 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0; | ^~~~~~~~~ hit.c: In function 'mm_join_long': hit.c:324:40: warning: operand of '?:' changes signedness from 'int' to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 324 | max_gap = a0e->x + max_gap > a1s->x? max_gap : a1s->x - a0e->x; | ^~~~~~~ hit.c:325:40: warning: operand of '?:' changes signedness from 'int' to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 325 | min_gap = a0e->x + min_gap < a1s->x? min_gap : a1s->x - a0e->x; | ^~~~~~~ hit.c: In function 'mm_gen_regs': hit.c:74:18: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 74 | r = (mm_reg1_t*)calloc(n_u, sizeof(mm_reg1_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from hit.c:2: /usr/include/stdlib.h:542:14: note: in a call to allocation function 'calloc' declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c index.c -o build/temp.linux-i386-3.9/index.o -DHAVE_KALLOC index.c: In function 'mm_idx_name2id': index.c:149:25: warning: operand of '?:' changes signedness from 'int' to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare] 149 | return k == kh_end(h)? -1 : kh_val(h, k); | ^~ index.c: In function 'mm_idx_gen': index.c:358:63: warning: operand of '?:' changes signedness from 'int' to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 358 | pl.mini_batch_size = (uint64_t)mini_batch_size < batch_size? mini_batch_size : batch_size; | ^~~~~~~~~~~~~~~ index.c: In function 'mm_idx_dump': index.c:458:16: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 458 | for (i = 0; i < 1<b; ++i) { | ^ index.c: In function 'mm_idx_load': index.c:505:16: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 505 | for (i = 0; i < 1<b; ++i) { | ^ index.c: In function 'mm_idx_bed_read': index.c:698:16: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 698 | for (i = 0; i < mi->n_seq; ++i) // TODO: eliminate redundant intervals | ^ index.c: In function 'mm_idx_bed_junc': index.c:708:35: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint32_t' {aka 'const unsigned int'} [-Wsign-compare] 708 | if (mi->I == 0 || ctg < 0 || ctg >= mi->n_seq) return -1; | ^~ i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c kalloc.c -o build/temp.linux-i386-3.9/kalloc.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c ksw2_extd2_sse.c -o build/temp.linux-i386-3.9/ksw2_extd2_sse.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c ksw2_exts2_sse.c -o build/temp.linux-i386-3.9/ksw2_exts2_sse.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c ksw2_extz2_sse.c -o build/temp.linux-i386-3.9/ksw2_extz2_sse.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c ksw2_ll_sse.c -o build/temp.linux-i386-3.9/ksw2_ll_sse.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c kthread.c -o build/temp.linux-i386-3.9/kthread.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c map.c -o build/temp.linux-i386-3.9/map.o -DHAVE_KALLOC map.c: In function 'mm_dust_minier': map.c:52:42: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint64_t' {aka 'const long long unsigned int'} due to unsignedness of other operand [-Wsign-compare] 52 | int ss = s > (int32_t)(dreg[v]>>32)? s : dreg[v]>>32; | ^ map.c:53:36: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'unsigned int' due to unsignedness of other operand [-Wsign-compare] 53 | int ee = e < (int32_t)dreg[v]? e : (uint32_t)dreg[v]; | ^ map.c: In function 'mm_map_frag': map.c:380:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d map.c:380:49: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d map.c:380:61: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest); | ~~^ ~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c misc.c -o build/temp.linux-i386-3.9/misc.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c options.c -o build/temp.linux-i386-3.9/options.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c pe.c -o build/temp.linux-i386-3.9/pe.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c python/mappy.c -o build/temp.linux-i386-3.9/python/mappy.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c sdust.c -o build/temp.linux-i386-3.9/sdust.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c sketch.c -o build/temp.linux-i386-3.9/sketch.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.9 -c splitidx.c -o build/temp.linux-i386-3.9/splitidx.o -DHAVE_KALLOC i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/align.o build/temp.linux-i386-3.9/bseq.o build/temp.linux-i386-3.9/chain.o build/temp.linux-i386-3.9/esterr.o build/temp.linux-i386-3.9/format.o build/temp.linux-i386-3.9/hit.o build/temp.linux-i386-3.9/index.o build/temp.linux-i386-3.9/kalloc.o build/temp.linux-i386-3.9/ksw2_extd2_sse.o build/temp.linux-i386-3.9/ksw2_exts2_sse.o build/temp.linux-i386-3.9/ksw2_extz2_sse.o build/temp.linux-i386-3.9/ksw2_ll_sse.o build/temp.linux-i386-3.9/kthread.o build/temp.linux-i386-3.9/map.o build/temp.linux-i386-3.9/misc.o build/temp.linux-i386-3.9/options.o build/temp.linux-i386-3.9/pe.o build/temp.linux-i386-3.9/python/mappy.o build/temp.linux-i386-3.9/sdust.o build/temp.linux-i386-3.9/sketch.o build/temp.linux-i386-3.9/splitidx.o -lz -lm -lpthread -o /build/reproducible-path/minimap2-2.17+dfsg/.pybuild/cpython3_3.9/build/mappy.cpython-39-i386-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting python/minimap2.py -> build/scripts-3.9 changing mode of build/scripts-3.9/minimap2.py from 644 to 755 make[1]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' debian/test_script [M::mm_idx_gen::0.004*1.75] collected minimizers [M::mm_idx_gen::0.006*2.07] sorted minimizers [M::main::0.006*2.06] loaded/built the index for 1 target sequence(s) [M::mm_mapopt_update::0.007*1.99] mid_occ = 2 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1 [M::mm_idx_stat::0.007*1.96] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326 [M::worker_pipeline::0.369*1.01] mapped 1 sequences [M::main] Version: 2.17-r941 [M::main] CMD: minimap2 -a test/MT-human.fa test/MT-orang.fa [M::main] Real time: 0.371 sec; CPU: 0.376 sec; Peak RSS: 0.004 GB [M::mm_idx_gen::0.003*1.64] collected minimizers [M::mm_idx_gen::0.005*2.14] sorted minimizers [M::main::0.021*0.69] loaded/built the index for 1 target sequence(s) [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1 [M::mm_idx_stat::0.021*0.70] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326 [M::main] Version: 2.17-r941 [M::main] CMD: minimap2 -d MT-human.mmi test/MT-human.fa [M::main] Real time: 0.022 sec; CPU: 0.016 sec; Peak RSS: 0.003 GB [M::main::0.004*1.31] loaded/built the index for 1 target sequence(s) [M::mm_mapopt_update::0.004*1.29] mid_occ = 2 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1 [M::mm_idx_stat::0.005*1.28] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326 [M::worker_pipeline::0.340*0.98] mapped 1 sequences [M::main] Version: 2.17-r941 [M::main] CMD: minimap2 -a MT-human.mmi test/MT-orang.fa [M::main] Real time: 0.342 sec; CPU: 0.335 sec; Peak RSS: 0.009 GB rm test.sam make[1]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_auto_install dh_auto_install --buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp running install running build running build_ext skipping 'python/mappy.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr creating /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr/lib creating /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr/lib/python3.9 creating /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr/lib/python3.9/dist-packages copying /build/reproducible-path/minimap2-2.17+dfsg/.pybuild/cpython3_3.9/build/mappy.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr/lib/python3.9/dist-packages running install_scripts creating /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr/bin copying build/scripts-3.9/minimap2.py -> /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr/bin changing mode of /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr/bin/minimap2.py to 755 running install_egg_info Writing /build/reproducible-path/minimap2-2.17+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/mappy-2.17.egg-info make[1]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' dh_python3 dh_lintian dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' dh_fixperms dh_missing dh_dwz -a debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/minimap2-2.17+dfsg' debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_strip ranlib /build/reproducible-path/minimap2-2.17+dfsg/debian/libminimap2-dev/usr/lib/libminimap2.a make[1]: Leaving directory '/build/reproducible-path/minimap2-2.17+dfsg' dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libminimap2-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-mappy: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-mappy: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-mappy: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-mappy: substitution variable ${python3:Versions} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minimap2-dbgsym' in '../minimap2-dbgsym_2.17+dfsg-12_i386.deb'. dpkg-deb: building package 'python3-mappy' in '../python3-mappy_2.17+dfsg-12_i386.deb'. dpkg-deb: building package 'minimap2' in '../minimap2_2.17+dfsg-12_i386.deb'. dpkg-deb: building package 'python3-mappy-dbgsym' in '../python3-mappy-dbgsym_2.17+dfsg-12_i386.deb'. dpkg-deb: building package 'libminimap2-dev' in '../libminimap2-dev_2.17+dfsg-12_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../minimap2_2.17+dfsg-12_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: user script /srv/workspace/pbuilder/15871/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/15871/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15871 and its subdirectories I: Current time: Sun Jan 14 11:20:09 +14 2024 I: pbuilder-time-stamp: 1705180809