unshare: unshare failed: Cannot allocate memory W: pbuilder: unshare CLONE_NEWNET not available I: pbuilder: network access is available during build! I: Current time: Sat May 22 12:22:15 +14 2021 I: pbuilder-time-stamp: 1621635735 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [mmseqs2_12-113e3+ds-3.dsc] I: copying [./mmseqs2_12-113e3+ds.orig.tar.xz] I: copying [./mmseqs2_12-113e3+ds-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.mGVkBXAt/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 13 04:31:54 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mmseqs2_12-113e3+ds-3.dsc dpkg-source: info: extracting mmseqs2 in mmseqs2-12-113e3+ds dpkg-source: info: unpacking mmseqs2_12-113e3+ds.orig.tar.xz dpkg-source: info: unpacking mmseqs2_12-113e3+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying simde_tweak dpkg-source: info: applying fix_tests.patch dpkg-source: info: applying fix_util_installation.patch dpkg-source: info: applying use_system_zstd.patch dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19453/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/19453/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/19453/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=825f1eb6109c4cd4b208fd010d5389d6 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=19453 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.LjJw69OpOV/pbuilderrc_LCTB --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.LjJw69OpOV/b2 --logfile b2/build.log --extrapackages usrmerge mmseqs2_12-113e3+ds-3.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux I: ls -l /bin total 5780 -rwxr-xr-x 1 root root 1367848 Feb 25 10:57 bash -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp -rwxr-xr-x 1 root root 128724 Dec 11 03:23 dash -rwxr-xr-x 1 root root 124904 Sep 23 2020 date -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd -rwxr-xr-x 1 root root 100752 Sep 23 2020 df -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln -rwxr-xr-x 1 root root 55572 Feb 8 2020 login -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Feb 25 10:57 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 May 22 12:26 sh -> bash lrwxrwxrwx 1 root root 4 May 22 04:22 sh.distrib -> dash -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch -rwxr-xr-x 1 root root 34664 Sep 23 2020 true -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/19453/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgzstream-dev; however: Package libgzstream-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbz2-dev{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgzstream-dev{a} libgzstream0{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 31.2 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.6 [727 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-2 [244 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.2 [372 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-1 [139 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libbz2-dev i386 1.0.8-4 [31.3 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libgzstream0 i386 1.5+dfsg-5 [6896 B] Get: 53 http://deb.debian.org/debian bullseye/main i386 libgzstream-dev i386 1.5+dfsg-5 [7188 B] Get: 54 http://deb.debian.org/debian bullseye/main i386 libsimde-dev all 0.7.2-4 [259 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libzstd-dev i386 1.4.8+dfsg-2.1 [374 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Fetched 31.2 MB in 4s (8668 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../05-libncurses6_6.2+20201114-2_i386.deb ... Unpacking libncurses6:i386 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:i386. Preparing to unpack .../06-libprocps8_2%3a3.3.17-5_i386.deb ... Unpacking libprocps8:i386 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a3.3.17-5_i386.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../10-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../13-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... 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Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libnghttp2-14:i386 (1.43.0-1) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:i386 (1.40.0-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:i386 (6.2+20201114-2) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Setting up libgzstream0 (1.5+dfsg-5) ... Setting up libjsoncpp24:i386 (1.9.4-4) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:i386 (1.4.1-2) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:i386 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.6) ... Setting up libprocps8:i386 (2:3.3.17-5) ... Setting up libbz2-dev:i386 (1.0.8-4) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:i386 (3.4.3-2+b1) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-2) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgzstream-dev (1.5+dfsg-5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:i386 (7.74.0-1.2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (1789 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24995 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package I: Running cd /build/mmseqs2-12-113e3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 12-113e3+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_auto_clean rm -Rf build-* make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2" && dh_auto_configure --builddirectory build_avx2 -- -DEXE_SUFFIX=-avx2 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx" && dh_auto_configure --builddirectory build_avx -- -DEXE_SUFFIX=-avx -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1" && dh_auto_configure --builddirectory build_sse4.1 -- -DEXE_SUFFIX=-sse4.1 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3" && dh_auto_configure --builddirectory build_ssse3 -- -DEXE_SUFFIX=-ssse3 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3" && dh_auto_configure --builddirectory build_sse3 -- -DEXE_SUFFIX=-sse3 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && true cd build_avx2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-avx2 -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU CMake Warning at CMakeLists.txt:57 (message): CPU without native SIMD instructions. Performance will be bad. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Found Atomic: /usr/lib/i386-linux-gnu/libatomic.so.1 -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_avx2 cd build_avx && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-avx -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU CMake Warning at CMakeLists.txt:57 (message): CPU without native SIMD instructions. Performance will be bad. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Found Atomic: /usr/lib/i386-linux-gnu/libatomic.so.1 -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_avx cd build_sse4.1 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-sse4.1 -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU CMake Warning at CMakeLists.txt:57 (message): CPU without native SIMD instructions. Performance will be bad. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Found Atomic: /usr/lib/i386-linux-gnu/libatomic.so.1 -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_sse4.1 cd build_ssse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-ssse3 -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU CMake Warning at CMakeLists.txt:57 (message): CPU without native SIMD instructions. Performance will be bad. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Found Atomic: /usr/lib/i386-linux-gnu/libatomic.so.1 -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_ssse3 cd build_sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-sse3 -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU CMake Warning at CMakeLists.txt:57 (message): CPU without native SIMD instructions. Performance will be bad. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Found Atomic: /usr/lib/i386-linux-gnu/libatomic.so.1 -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_sse3 export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 cd build_plain && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-plain -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU CMake Warning at CMakeLists.txt:57 (message): CPU without native SIMD instructions. Performance will be bad. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Found Atomic: /usr/lib/i386-linux-gnu/libatomic.so.1 -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_plain export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2" && dh_auto_configure --builddirectory build_sse2 -- -DEXE_SUFFIX=-sse2 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse" && dh_auto_configure --builddirectory build_sse -- -DEXE_SUFFIX=-sse -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && true cd build_sse2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-sse2 -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU CMake Warning at CMakeLists.txt:57 (message): CPU without native SIMD instructions. Performance will be bad. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Found Atomic: /usr/lib/i386-linux-gnu/libatomic.so.1 -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_sse2 cd build_sse && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-sse -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU CMake Warning at CMakeLists.txt:57 (message): CPU without native SIMD instructions. Performance will be bad. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Found Atomic: /usr/lib/i386-linux-gnu/libatomic.so.1 -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_sse make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen debian/rules override_dh_auto_build-arch make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten mkdir -p /build/mmseqs2-12-113e3+ds/debian/mmseqs2/usr/bin dh_auto_build --builddirectory build_avx2 && dh_auto_build --builddirectory build_avx && dh_auto_build --builddirectory build_sse4.1 && dh_auto_build --builddirectory build_ssse3 && dh_auto_build --builddirectory build_sse3 && true cd build_avx2 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx2/CMakeFiles /build/mmseqs2-12-113e3+ds/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/data /build/mmseqs2-12-113e3+ds/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/depend.internal". make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/depend.internal". cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/src/version /build/mmseqs2-12-113e3+ds/build_avx2/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= Scanning dependencies of target generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/alp/CMakeFiles/alp.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/alp/CMakeFiles/alp.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/depend.internal". [ 0%] Generating ../generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out Scanning dependencies of target ksw2 [ 1%] Generating ../generated/blosum62.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen [ 2%] Generating ../generated/nucleotide.out.h [ 2%] Generating ../generated/VTML40.out.h make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build Scanning dependencies of target tinyexpr cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten Scanning dependencies of target version make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated Scanning dependencies of target microtar cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h [ 2%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp [ 2%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o [ 2%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c [ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o Scanning dependencies of target cacode cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h [ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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/usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o Scanning dependencies of target alp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build /usr/bin/ranlib libversion.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten [ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h [ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp [ 6%] Built target version cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp [ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 7%] Linking C static library libmicrotar.a [ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h [ 8%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen [ 9%] Built target microtar [ 10%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp [ 10%] Generating ../generated/libPolished_8.lib.h [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h.tmp [ 12%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h [ 12%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h [ 13%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h [ 14%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen [ 14%] Built target tinyexpr cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp [ 14%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen [ 14%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp [ 14%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h [ 15%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h [ 15%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated [ 16%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h [ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h [ 16%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated [ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o [ 18%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h [ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp [ 18%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h.tmp [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h [ 20%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h [ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp [ 20%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h [ 20%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h [ 20%] Built target ksw2 [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h [ 22%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h [ 22%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h [ 23%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h [ 24%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h [ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h [ 24%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated [ 25%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h [ 25%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h [ 25%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h [ 26%] Generating ../generated/enrich.sh.h [ 26%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h [ 26%] Generating ../generated/linsearch.sh.h [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h [ 28%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen [ 28%] Built target generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/src /build/mmseqs2-12-113e3+ds/build_avx2/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx2/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx2/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Scanning dependencies of target mmseqs-framework make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/FileUtil.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/HeaderSummarizer.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/KSeqWrapper.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryMapped.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryTracker.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2048>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:343:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<1024>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:344:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<512>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:345:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<256>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:346:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<64>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:348:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<32>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:349:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<16>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:350:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<4>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:352:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxseqdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/createtaxdb.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Cluster.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/ClusterUpdate.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Databases.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linclust.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/CreateIndex.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/mmseqs2-12-113e3+ds/src/MMseqsBase.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 99%] Linking CXX static library libmmseqs-framework.a cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake cd 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Dependee "/build/mmseqs2-12-113e3+ds/build_avx/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx/lib/microtar/CMakeFiles/microtar.dir/depend.internal". 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Dependee "/build/mmseqs2-12-113e3+ds/build_avx/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx/data/CMakeFiles/generated.dir/depend.internal". Scanning dependencies of target generated Scanning dependencies of target microtar make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build [ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten Scanning dependencies of target tinyexpr make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build Scanning dependencies of target cacode Scanning dependencies of target ksw2 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build [ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c [ 2%] Generating ../generated/VTML40.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out [ 2%] Generating ../generated/nucleotide.out.h [ 2%] Generating ../generated/VTML80.out.h [ 2%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c [ 3%] Generating ../generated/blosum62.out.h [ 3%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out [ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h [ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp [ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib [ 5%] Generating ../generated/PAM30.out.h [ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h Scanning dependencies of target alp cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp [ 5%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h [ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h [ 7%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h [ 7%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated [ 8%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h.tmp /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen [ 8%] Built target version [ 9%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp [ 10%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h [ 11%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated [ 11%] Linking C static library libmicrotar.a cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen [ 12%] Built target microtar [ 12%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h [ 12%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h [ 13%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h [ 13%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h [ 14%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp [ 14%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh [ 15%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h [ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h.tmp [ 16%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake [ 16%] Built target cacode [ 16%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h [ 17%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h [ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h.tmp /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o [ 18%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated /usr/bin/ranlib libtinyexpr.a [ 18%] Generating ../generated/cascaded_clustering.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h [ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated [ 18%] Built target tinyexpr [ 19%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp [ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h [ 20%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh [ 21%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h [ 21%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h [ 22%] Generating ../generated/translated_search.sh.h [ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated [ 23%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h [ 24%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated [ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp [ 24%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h.tmp [ 25%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen [ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh [ 25%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h [ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h [ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h [ 27%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h [ 28%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h.tmp [ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen [ 28%] Built target generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_avx /build/mmseqs2-12-113e3+ds/build_avx/src /build/mmseqs2-12-113e3+ds/build_avx/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_avx/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_avx/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_avx/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Scanning dependencies of target mmseqs-framework make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten [ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o [ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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-I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/FileUtil.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/HeaderSummarizer.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/KSeqWrapper.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryMapped.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryTracker.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MMseqsMPI.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MultiParam.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/NucleotideMatrix.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Orf.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Parameters.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ProfileStates.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/LibraryReader.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Sequence.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/tantan.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ 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-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2048>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:343:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<1024>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:344:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<512>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:345:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<256>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:346:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<64>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:348:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<32>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:349:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<16>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:350:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<4>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:352:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxseqdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/createtaxdb.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2rbh.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Cluster.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/ClusterUpdate.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Databases.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linclust.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/CreateIndex.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/mmseqs-avx.dir/mmseqs.cpp.o -o mmseqs-avx libmmseqs-framework.a version/libversion.a /usr/lib/i386-linux-gnu/libatomic.so.1 ../lib/tinyexpr/libtinyexpr.a -lm -lzstd ../lib/microtar/libmicrotar.a -lgzstream -lz -lbz2 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen [100%] Built target mmseqs-avx make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx/CMakeFiles 0 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen cd build_sse4.1 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse4.1/CMakeFiles /build/mmseqs2-12-113e3+ds/build_sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/data 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Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Scanning dependencies of target version Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/depend.internal". make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten Scanning dependencies of target ksw2 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen Scanning dependencies of target tinyexpr Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/depend.internal". make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build Scanning dependencies of target generated Scanning dependencies of target cacode make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten [ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp Scanning dependencies of target microtar make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build [ 0%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten [ 0%] Generating ../generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c [ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o [ 1%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp [ 2%] Generating ../generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp [ 2%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out [ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h [ 3%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out [ 4%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h.tmp Scanning dependencies of target alp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h.tmp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h [ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h [ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h [ 7%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 8%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp [ 8%] Built target version cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp [ 8%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h [ 9%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 9%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h.tmp [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h [ 10%] Linking C static library libmicrotar.a cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake [ 10%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen [ 10%] Built target microtar [ 11%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h [ 13%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h [ 13%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp [ 14%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 [ 14%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /usr/bin/ranlib libtinyexpr.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h [ 14%] Built target tinyexpr [ 15%] Generating ../generated/easytaxonomy.sh.h [ 16%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh [ 16%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h [ 17%] Generating ../generated/map.sh.h [ 17%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h [ 17%] Built target cacode [ 17%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh [ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp [ 18%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h [ 18%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp [ 18%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 19%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h [ 19%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp [ 20%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h [ 20%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h [ 21%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h.tmp [ 21%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h [ 22%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 22%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h [ 22%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h [ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp [ 24%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h [ 24%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h [ 25%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h [ 25%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h [ 26%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 26%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h [ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h [ 26%] Built target ksw2 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen [ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ 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-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/src /build/mmseqs2-12-113e3+ds/build_sse4.1/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee 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-I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o [ 30%] Building CXX object 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CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust 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-I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2048>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:343:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<1024>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:344:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<512>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:345:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<256>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:346:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<64>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:348:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<32>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:349:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<16>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:350:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<4>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:352:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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-I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Cluster.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/ClusterUpdate.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Databases.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons 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-fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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../lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o ../lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o /usr/bin/ranlib libmmseqs-framework.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen [ 99%] Built target mmseqs-framework make -f src/CMakeFiles/mmseqs-sse4.1.dir/build.make src/CMakeFiles/mmseqs-sse4.1.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/src 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Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/CMakeFiles/mmseqs-sse4.1.dir/depend.internal". Scanning dependencies of target mmseqs-sse4.1 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make -f src/CMakeFiles/mmseqs-sse4.1.dir/build.make src/CMakeFiles/mmseqs-sse4.1.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten [ 99%] Building CXX object src/CMakeFiles/mmseqs-sse4.1.dir/mmseqs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-sse4.1.dir/mmseqs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs-sse4.1 cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_ssse3/CMakeFiles /build/mmseqs2-12-113e3+ds/build_ssse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/data /build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/src/version /build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/depend.internal". Scanning dependencies of target generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Scanning dependencies of target microtar make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/version.dir/depend.internal". [ 0%] Generating ../generated/VTML80.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out [ 0%] Generating ../generated/nucleotide.out.h [ 1%] Generating ../generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out [ 2%] Generating ../generated/blosum62.out.h Scanning dependencies of target ksw2 cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o Scanning dependencies of target version cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten [ 3%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp [ 3%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp Scanning dependencies of target tinyexpr make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build Scanning dependencies of target cacode make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= [ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp [ 4%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h.tmp Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/depend.internal". cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h [ 5%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 [ 5%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib [ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o [ 5%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h /usr/bin/ranlib libversion.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp [ 6%] Built target version cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h [ 7%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib [ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h Scanning dependencies of target alp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build [ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h [ 7%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp [ 8%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h [ 9%] Generating ../generated/krona_prelude.html.h [ 10%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h [ 10%] Generating ../generated/easysearch.sh.h [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp [ 10%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o [ 12%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen [ 12%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 12%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h [ 13%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp [ 13%] Linking C static library libmicrotar.a cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o [ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp /usr/bin/ranlib libmicrotar.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen [ 14%] Built target microtar [ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h [ 14%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h [ 15%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h [ 15%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h [ 16%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp [ 17%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h [ 17%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h.tmp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen [ 17%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp [ 17%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h [ 18%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp [ 19%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h [ 20%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o [ 21%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h [ 21%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h /usr/bin/ranlib libtinyexpr.a [ 22%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h [ 22%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h.tmp [ 22%] Built target tinyexpr [ 23%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h [ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h [ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 24%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp [ 25%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h [ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp [ 26%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h [ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp [ 27%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp [ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h [ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen [ 28%] Built target generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/src /build/mmseqs2-12-113e3+ds/build_ssse3/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Scanning dependencies of target mmseqs-framework make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd 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/build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o 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-I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde 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CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde 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CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/FileUtil.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/KSeqWrapper.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryTracker.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MultiParam.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ProfileStates.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Sequence.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/tantan.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2048>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:343:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<1024>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:344:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<512>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:345:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<256>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:346:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<64>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:348:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<32>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:349:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<16>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:350:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<4>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:352:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxseqdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/createtaxdb.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2rbh.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Cluster.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/ClusterUpdate.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Databases.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linclust.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar 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CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/mmseqs2-12-113e3+ds/src/MMseqsBase.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions 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/build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/src/version /build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Scanning dependencies of target version make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/data /build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/depend.internal". make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/depend.internal". make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build Scanning dependencies of target microtar Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Scanning dependencies of target ksw2 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten Scanning dependencies of target tinyexpr make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten Scanning dependencies of target cacode make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/depend.internal". [ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o Scanning dependencies of target generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build [ 0%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten [ 0%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o [ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c [ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o [ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp [ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp [ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp [ 3%] Generating ../generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 4%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h /usr/bin/ranlib libversion.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h [ 4%] Built target version [ 4%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out [ 5%] Generating ../generated/VTML40.out.h [ 6%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h.tmp Scanning dependencies of target alp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h [ 6%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out [ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h [ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h [ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp [ 9%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h [ 9%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h [ 10%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h [ 10%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h.tmp [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h [ 12%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h [ 12%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h [ 12%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h [ 13%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h [ 13%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 14%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h [ 14%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh [ 14%] Linking C static library libmicrotar.a cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h [ 15%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o [ 15%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h [ 15%] Built target cacode [ 16%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h [ 16%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp /usr/bin/ranlib libmicrotar.a cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen [ 16%] Built target microtar [ 16%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h [ 17%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h [ 17%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 18%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h [ 18%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh [ 19%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h.tmp [ 19%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h [ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp [ 21%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 21%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h.tmp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h.tmp [ 21%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h [ 21%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h [ 22%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h [ 22%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h [ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o [ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp [ 23%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh [ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h [ 24%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp [ 25%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h [ 25%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp [ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen [ 27%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake [ 27%] Built target generated cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o [ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp /usr/bin/ranlib libtinyexpr.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen [ 28%] Built target tinyexpr [ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/src /build/mmseqs2-12-113e3+ds/build_sse3/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Scanning dependencies of target mmseqs-framework make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten [ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ 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-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/FileUtil.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/HeaderSummarizer.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/KSeqWrapper.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryMapped.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryTracker.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MMseqsMPI.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MultiParam.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/NucleotideMatrix.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Parameters.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/LibraryReader.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd 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/build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2048>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:343:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<1024>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:344:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<512>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:345:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<256>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:346:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<64>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:348:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<32>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:349:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<16>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:350:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<4>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:352:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxseqdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/createtaxdb.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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/build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd 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/build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2rbh.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde 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CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Databases.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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src/CMakeFiles/mmseqs-sse3.dir/build.make src/CMakeFiles/mmseqs-sse3.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/src /build/mmseqs2-12-113e3+ds/build_sse3/src/CMakeFiles/mmseqs-sse3.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/src/CMakeFiles/mmseqs-sse3.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/src/CMakeFiles/mmseqs-sse3.dir/depend.internal". 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Scanning dependencies of target mmseqs-sse3 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen make -f src/CMakeFiles/mmseqs-sse3.dir/build.make src/CMakeFiles/mmseqs-sse3.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten [ 99%] Building CXX object src/CMakeFiles/mmseqs-sse3.dir/mmseqs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-sse3.dir/mmseqs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs-sse3 cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/mmseqs-sse3.dir/mmseqs.cpp.o -o mmseqs-sse3 libmmseqs-framework.a version/libversion.a /usr/lib/i386-linux-gnu/libatomic.so.1 ../lib/tinyexpr/libtinyexpr.a -lm -lzstd ../lib/microtar/libmicrotar.a -lgzstream -lz -lbz2 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen [100%] Built target mmseqs-sse3 make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse3/CMakeFiles 0 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen dh_auto_build --builddirectory build_sse2 && dh_auto_build --builddirectory build_sse && true cd build_sse2 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse2/CMakeFiles /build/mmseqs2-12-113e3+ds/build_sse2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/data /build/mmseqs2-12-113e3+ds/build_sse2/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/src/version /build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Scanning dependencies of target ksw2 Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Scanning dependencies of target tinyexpr Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/alp/CMakeFiles/alp.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/lib/alp/CMakeFiles/alp.dir/depend.internal". make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen Scanning dependencies of target microtar make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/data/CMakeFiles/generated.dir/depend.internal". Scanning dependencies of target generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/version.dir/depend.internal". Scanning dependencies of target version make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten [ 0%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c [ 0%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o [ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c [ 1%] Generating ../generated/VTML80.out.h [ 2%] Generating ../generated/blosum62.out.h [ 2%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out [ 3%] Generating ../generated/VTML40.out.h Scanning dependencies of target cacode cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated [ 3%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h [ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h [ 5%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h [ 5%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out [ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h [ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp [ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h Scanning dependencies of target alp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten /usr/bin/ranlib libversion.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp [ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib [ 6%] Built target version cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h [ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h.tmp [ 8%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h [ 8%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h [ 9%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h [ 9%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h [ 10%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated [ 10%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h [ 10%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h.tmp [ 11%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h [ 11%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h [ 12%] Generating ../generated/blastp.sh.h [ 12%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h [ 13%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h [ 13%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h [ 14%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h.tmp [ 14%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h [ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp [ 14%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h [ 14%] Generating ../generated/searchtargetprofile.sh.h [ 15%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h [ 16%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h [ 17%] Generating ../generated/translated_search.sh.h [ 17%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h [ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h [ 18%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated [ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o [ 19%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated [ 19%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h.tmp [ 19%] Linking C static library libmicrotar.a cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h [ 19%] Built target cacode [ 20%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated [ 21%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated [ 21%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h /usr/bin/ranlib libmicrotar.a make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h [ 21%] Built target microtar cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen [ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp [ 23%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated [ 23%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h [ 23%] Built target ksw2 [ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h.tmp [ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h [ 24%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h [ 24%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h.tmp [ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen [ 25%] Built target generated [ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp 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make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen [ 27%] Built target tinyexpr [ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp [ 28%] Building CXX object 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cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/src /build/mmseqs2-12-113e3+ds/build_sse2/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/src/CMakeFiles/mmseqs-framework.dir/depend.internal". 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-I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o cd 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/FileUtil.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/HeaderSummarizer.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/KSeqWrapper.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryMapped.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryTracker.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MMseqsMPI.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/NucleotideMatrix.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Parameters.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/LibraryReader.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2048>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:343:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<1024>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:344:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<512>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:345:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<256>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:346:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<64>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:348:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<32>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:349:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<16>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:350:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<4>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:352:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxseqdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/createtaxdb.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2rbh.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Cluster.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Databases.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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~~^~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd 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/build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust 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object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd 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/build/mmseqs2-12-113e3+ds/build_sse/src/version /build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/data /build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= Dependee 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Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/alp.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/alp.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/depend.internal". Scanning dependencies of target generated Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten Dependee "/build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/version.dir/depend.internal". Scanning dependencies of target ksw2 make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten Scanning dependencies of target microtar make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten [ 1%] Generating ../generated/VTML40.out.h Scanning dependencies of target cacode cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build [ 2%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp [ 2%] Generating ../generated/VTML80.out.h [ 2%] Generating ../generated/nucleotide.out.h Scanning dependencies of target version [ 2%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten Scanning dependencies of target tinyexpr cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build [ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten [ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp [ 4%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp [ 4%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h.tmp [ 5%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/build_sse/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/build_sse/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h.tmp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen [ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp [ 5%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated [ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h [ 6%] Built target version cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated Scanning dependencies of target alp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten [ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated [ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp [ 7%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h [ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h [ 7%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h [ 8%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h [ 8%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 8%] Linking C static library libmicrotar.a cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h [ 8%] Generating ../generated/easysearch.sh.h [ 9%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated [ 9%] Generating ../generated/easycluster.sh.h [ 10%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated /usr/bin/ranlib libmicrotar.a cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h [ 10%] Built target microtar cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h [ 11%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp [ 11%] Generating ../generated/easyrbh.sh.h [ 12%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h [ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h [ 13%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated [ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h [ 14%] Generating ../generated/map.sh.h [ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated [ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h.tmp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h [ 15%] Generating ../generated/rbh.sh.h [ 15%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated [ 16%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp [ 17%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh [ 17%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh [ 18%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h.tmp make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h.tmp [ 18%] Built target tinyexpr cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h [ 19%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh [ 19%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh [ 20%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h [ 20%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated [ 21%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h.tmp [ 21%] Generating ../generated/taxonomy.sh.h [ 22%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h [ 22%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h [ 22%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh [ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h [ 24%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh [ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h [ 24%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h [ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h [ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h [ 26%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h [ 27%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/databases.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/databases.sh.h.tmp [ 27%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/databases.sh.h [ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp [ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen [ 28%] Built target generated make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/src /build/mmseqs2-12-113e3+ds/build_sse/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/build_sse/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/src/CMakeFiles/mmseqs-framework.dir/depend.internal". Scanning dependencies of target mmseqs-framework make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ 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-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp [ 37%] Building CXX object 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-I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/FileUtil.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/HeaderSummarizer.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/KSeqWrapper.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryMapped.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryTracker.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MMseqsMPI.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MultiParam.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/NucleotideMatrix.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Orf.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Parameters.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ProfileStates.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/LibraryReader.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Sequence.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/tantan.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2048>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:343:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<1024>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:344:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<512>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:345:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<256>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:346:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<64>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:348:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<32>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:349:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<16>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:350:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<4>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:352:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxseqdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2rbh.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:9: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Cluster.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/ClusterUpdate.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Databases.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linclust.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ 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-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/CreateIndex.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-avx2 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen cd build_avx && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten make[3]: Für das Ziel „preinstall“ ist nichts zu tun. make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-avx make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen cd build_sse4.1 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten make[3]: Für das Ziel „preinstall“ ist nichts zu tun. make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse4.1 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen cd build_ssse3 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten make[3]: Für das Ziel „preinstall“ ist nichts zu tun. make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-ssse3 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen cd build_sse3 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten make[3]: Für das Ziel „preinstall“ ist nichts zu tun. make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse3 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen dh_auto_install --builddirectory build_sse2 && dh_auto_install --builddirectory build_sse && true cd build_sse2 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten make[3]: Für das Ziel „preinstall“ ist nichts zu tun. make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse2 make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen cd build_sse && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten make[3]: Für das Ziel „preinstall“ ist nichts zu tun. make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen dh_install -pmmseqs2 usr/bin/mmseqs-* usr/bin/ set -e && cd /build/mmseqs2-12-113e3+ds/debian/mmseqs2/usr/bin \ && for prog in mmseqs ; do \ ln -s ../lib/mmseqs2/simd-dispatch ${prog} ; done make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen debian/rules override_dh_install-arch make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_install --arch mkdir -p debian/mmseqs2/usr/lib/mmseqs2/test cp src/test/*.index debian/mmseqs2/usr/lib/mmseqs2/test/ cp src/test/dataGap debian/mmseqs2/usr/lib/mmseqs2/test/ cp src/test/dataLinear debian/mmseqs2/usr/lib/mmseqs2/test/ #cp -r obj-i386-linux-gnu/src/test debian/mmseqs2/usr/lib/mmseqs2/ # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2/usr/lib/mmseqs2/test/CMakeFiles \ debian/mmseqs2/usr/lib/mmseqs2/test/*.cmake \ debian/mmseqs2/usr/lib/mmseqs2/test/Makefile make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen debian/rules override_dh_install-indep make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_install --indep # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/*.lib \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiag.out \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiagTargetCov.out make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), " make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen dh_md5sums dh_builddeb dpkg-deb: Paket »mmseqs2« wird in »../mmseqs2_12-113e3+ds-3_i386.deb« gebaut. dpkg-deb: Paket »mmseqs2-examples« wird in »../mmseqs2-examples_12-113e3+ds-3_all.deb« gebaut. dpkg-deb: Paket »mmseqs2-dbgsym« wird in »../mmseqs2-dbgsym_12-113e3+ds-3_i386.deb« gebaut. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mmseqs2_12-113e3+ds-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: user script /srv/workspace/pbuilder/19453/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/19453/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19453 and its subdirectories I: Current time: Sat May 22 13:05:41 +14 2021 I: pbuilder-time-stamp: 1621638341