I: pbuilder: network access will be disabled during build
I: Current time: Fri Feb 14 07:16:56 +14 2025
I: pbuilder-time-stamp: 1739467016
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [ncbi-vdb_2.10.9+dfsg-2.dsc]
I: copying [./ncbi-vdb_2.10.9+dfsg.orig.tar.xz]
I: copying [./ncbi-vdb_2.10.9+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.YTFs2wwX/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 18 22:02:03 2021
gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ncbi-vdb_2.10.9+dfsg-2.dsc
dpkg-source: info: extracting ncbi-vdb in ncbi-vdb-2.10.9+dfsg
dpkg-source: info: unpacking ncbi-vdb_2.10.9+dfsg.orig.tar.xz
dpkg-source: info: unpacking ncbi-vdb_2.10.9+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying debug_configure.patch
dpkg-source: info: applying find_hdf5_serial.patch
dpkg-source: info: applying find_ngs-sdk.patch
dpkg-source: info: applying skip_failing_test.patch
dpkg-source: info: applying fix_install_target.patch
dpkg-source: info: applying use_debian_packaged_zlib.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying remove_-m64_flag.patch
dpkg-source: info: applying add_-msse2.patch
dpkg-source: info: applying use_debian_packaged_libmbedx.patch
dpkg-source: info: applying mbedtls_ssl_init.patch
dpkg-source: info: applying i386-uint64_msbit.patch
dpkg-source: info: applying fix_path_mbedtls.patch
dpkg-source: info: applying redefine_CALL_MBEDTLS.patch
dpkg-source: info: applying fix_2.10.9_refseq_race.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/76220/tmp/hooks/D01_modify_environment starting
debug: Running on ionos16-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Feb 13 17:17 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/76220/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/76220/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
BASH_VERSION='5.1.4(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=i386
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 '
DIRSTACK=()
DISTRIBUTION=bullseye
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=i686
HOST_ARCH=i386
IFS='
'
INVOCATION_ID=c4a88d98fdbd4531a10b446e82e556a5
LANG=C
LANGUAGE=de_CH:de
LC_ALL=C
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
MACHTYPE=i686-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=76220
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pxCRUVJg/pbuilderrc_iWqD --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pxCRUVJg/b2 --logfile b2/build.log ncbi-vdb_2.10.9+dfsg-2.dsc'
SUDO_GID=112
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://85.184.249.68:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux
I: ls -l /bin
total 5776
-rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 38824 Sep 22 2020 cat
-rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 75752 Sep 22 2020 chown
-rwxr-xr-x 1 root root 157960 Sep 22 2020 cp
-rwxr-xr-x 1 root root 128724 Dec 10 2020 dash
-rwxr-xr-x 1 root root 124904 Sep 22 2020 date
-rwxr-xr-x 1 root root 92172 Sep 22 2020 dd
-rwxr-xr-x 1 root root 100752 Sep 22 2020 df
-rwxr-xr-x 1 root root 153964 Sep 22 2020 dir
-rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg
lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname
-rwxr-xr-x 1 root root 34664 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Jan 25 2023 egrep
-rwxr-xr-x 1 root root 34664 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep
-rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt
-rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount
-rwxr-xr-x 1 root root 210488 Jan 25 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 21916 Nov 7 2019 hostname
-rwxr-xr-x 1 root root 83980 Sep 22 2020 ln
-rwxr-xr-x 1 root root 55572 Feb 7 2020 login
-rwxr-xr-x 1 root root 153964 Sep 22 2020 ls
-rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk
-rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 58920 Jan 20 2022 more
-rwsr-xr-x 1 root root 50720 Jan 20 2022 mount
-rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint
-rwxr-xr-x 1 root root 157996 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash
-rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 75720 Sep 22 2020 rm
-rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 125036 Dec 22 2018 sed
lrwxrwxrwx 1 root root 9 Feb 13 17:17 sh -> /bin/bash
-rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 83880 Sep 22 2020 stty
-rwsr-xr-x 1 root root 79396 Jan 20 2022 su
-rwxr-xr-x 1 root root 34696 Sep 22 2020 sync
-rwxr-xr-x 1 root root 602584 Feb 17 2021 tar
-rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 108520 Sep 22 2020 touch
-rwxr-xr-x 1 root root 34664 Sep 22 2020 true
-rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Jan 20 2022 umount
-rwxr-xr-x 1 root root 34664 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl
lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/76220/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), d-shlibs (>= 0.82), libbz2-dev, libxml2-dev, libhdf5-dev, libmagic-dev, libngs-sdk-dev, libngs-java, libmbedtls-dev, zlib1g-dev, default-jdk-headless
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 17763 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.82); however:
Package d-shlibs is not installed.
pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
Package libbz2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libxml2-dev; however:
Package libxml2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libhdf5-dev; however:
Package libhdf5-dev is not installed.
pbuilder-satisfydepends-dummy depends on libmagic-dev; however:
Package libmagic-dev is not installed.
pbuilder-satisfydepends-dummy depends on libngs-sdk-dev; however:
Package libngs-sdk-dev is not installed.
pbuilder-satisfydepends-dummy depends on libngs-java; however:
Package libngs-java is not installed.
pbuilder-satisfydepends-dummy depends on libmbedtls-dev; however:
Package libmbedtls-dev is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on default-jdk-headless; however:
Package default-jdk-headless is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} d-shlibs{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} java-common{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu-dev{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblcms2-2{a} libmagic-dev{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto3{a} libmbedtls-dev{a} libmbedtls12{a} libmbedx509-0{a} libngs-java{a} libngs-sdk-dev{a} libngs-sdk2{a} libnspr4{a} libnss3{a} libpcsclite1{a} libpipeline1{a} libpng16-16{a} libsigsegv2{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} libxml2-dev{a} m4{a} man-db{a} openjdk-11-jdk-headless{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} sensible-utils{a} ucf{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
alsa-topology-conf alsa-ucm-conf bzip2-doc curl dbus libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs
0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded.
Need to get 156 MB of archives. After unpacking 414 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8+deb11u1 [149 kB]
Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB]
Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB]
Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB]
Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB]
Get: 7 http://deb.debian.org/debian bullseye/main i386 openssl i386 1.1.1w-0+deb11u1 [869 kB]
Get: 8 http://deb.debian.org/debian bullseye/main i386 ca-certificates all 20210119 [158 kB]
Get: 9 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3+deb11u1 [273 kB]
Get: 10 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3+deb11u1 [135 kB]
Get: 11 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3+deb11u1 [69.2 kB]
Get: 12 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB]
Get: 13 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB]
Get: 14 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB]
Get: 15 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB]
Get: 16 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB]
Get: 17 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 18 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB]
Get: 19 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB]
Get: 20 http://deb.debian.org/debian bullseye/main i386 java-common all 0.72 [14.5 kB]
Get: 21 http://deb.debian.org/debian bullseye/main i386 libavahi-common-data i386 0.8-5+deb11u2 [124 kB]
Get: 22 http://deb.debian.org/debian bullseye/main i386 libavahi-common3 i386 0.8-5+deb11u2 [60.4 kB]
Get: 23 http://deb.debian.org/debian bullseye/main i386 libdbus-1-3 i386 1.12.28-0+deb11u1 [236 kB]
Get: 24 http://deb.debian.org/debian bullseye/main i386 libavahi-client3 i386 0.8-5+deb11u2 [64.6 kB]
Get: 25 http://deb.debian.org/debian bullseye/main i386 libcups2 i386 2.3.3op2-3+deb11u6 [367 kB]
Get: 26 http://deb.debian.org/debian bullseye/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB]
Get: 27 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB]
Get: 28 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2+deb11u5 [101 kB]
Get: 29 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB]
Get: 30 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB]
Get: 31 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1+deb11u1 [430 kB]
Get: 32 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB]
Get: 33 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB]
Get: 34 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB]
Get: 35 http://deb.debian.org/debian bullseye/main i386 libnspr4 i386 2:4.29-1 [122 kB]
Get: 36 http://deb.debian.org/debian bullseye/main i386 libnss3 i386 2:3.61-1+deb11u3 [1385 kB]
Get: 37 http://deb.debian.org/debian bullseye/main i386 libasound2-data all 1.2.4-1.1 [38.2 kB]
Get: 38 http://deb.debian.org/debian bullseye/main i386 libasound2 i386 1.2.4-1.1 [379 kB]
Get: 39 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB]
Get: 40 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 41 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB]
Get: 42 http://deb.debian.org/debian bullseye/main i386 libpcsclite1 i386 1.9.1-1 [61.7 kB]
Get: 43 http://deb.debian.org/debian bullseye/main i386 openjdk-11-jre-headless i386 11.0.20+8-1~deb11u1 [38.2 MB]
Get: 44 http://deb.debian.org/debian bullseye/main i386 default-jre-headless i386 2:1.11-72 [10.9 kB]
Get: 45 http://deb.debian.org/debian bullseye/main i386 ca-certificates-java all 20190909+deb11u1 [15.9 kB]
Get: 46 http://deb.debian.org/debian bullseye/main i386 d-shlibs all 0.98 [17.9 kB]
Get: 47 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB]
Get: 48 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB]
Get: 49 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 50 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 51 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 52 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 53 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 54 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB]
Get: 55 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB]
Get: 56 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB]
Get: 57 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7+deb11u4 [728 kB]
Get: 58 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB]
Get: 59 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 60 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 61 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB]
Get: 62 http://deb.debian.org/debian bullseye/main i386 openjdk-11-jdk-headless i386 11.0.20+8-1~deb11u1 [70.9 MB]
Get: 63 http://deb.debian.org/debian bullseye/main i386 default-jdk-headless i386 2:1.11-72 [1100 B]
Get: 64 http://deb.debian.org/debian bullseye/main i386 hdf5-helpers i386 1.10.6+repack-4+deb11u1 [40.4 kB]
Get: 65 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-7 [209 kB]
Get: 66 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB]
Get: 67 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B]
Get: 68 http://deb.debian.org/debian bullseye/main i386 libaec-dev i386 1.0.4-1 [21.5 kB]
Get: 69 http://deb.debian.org/debian bullseye/main i386 libbz2-dev i386 1.0.8-4 [31.3 kB]
Get: 70 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB]
Get: 71 http://deb.debian.org/debian bullseye/main i386 libhdf5-103-1 i386 1.10.6+repack-4+deb11u1 [1160 kB]
Get: 72 http://deb.debian.org/debian bullseye/main i386 libhdf5-cpp-103-1 i386 1.10.6+repack-4+deb11u1 [149 kB]
Get: 73 http://deb.debian.org/debian bullseye/main i386 libhdf5-fortran-102 i386 1.10.6+repack-4+deb11u1 [113 kB]
Get: 74 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-100 i386 1.10.6+repack-4+deb11u1 [93.2 kB]
Get: 75 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-fortran-100 i386 1.10.6+repack-4+deb11u1 [58.6 kB]
Get: 76 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-cpp-100 i386 1.10.6+repack-4+deb11u1 [38.2 kB]
Get: 77 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB]
Get: 78 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB]
Get: 79 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB]
Get: 80 http://deb.debian.org/debian bullseye/main i386 libhdf5-dev i386 1.10.6+repack-4+deb11u1 [2585 kB]
Get: 81 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-7 [9801 kB]
Get: 82 http://deb.debian.org/debian bullseye/main i386 libmagic-dev i386 1:5.39-3+deb11u1 [146 kB]
Get: 83 http://deb.debian.org/debian bullseye/main i386 libmbedcrypto3 i386 2.16.9-0.1 [234 kB]
Get: 84 http://deb.debian.org/debian bullseye/main i386 libmbedx509-0 i386 2.16.9-0.1 [110 kB]
Get: 85 http://deb.debian.org/debian bullseye/main i386 libmbedtls12 i386 2.16.9-0.1 [143 kB]
Get: 86 http://deb.debian.org/debian bullseye/main i386 libmbedtls-dev i386 2.16.9-0.1 [542 kB]
Get: 87 http://deb.debian.org/debian bullseye/main i386 libngs-sdk2 i386 2.10.9-1 [61.2 kB]
Get: 88 http://deb.debian.org/debian bullseye/main i386 libngs-sdk-dev i386 2.10.9-1 [113 kB]
Get: 89 http://deb.debian.org/debian bullseye/main i386 libngs-java i386 2.10.9-1 [80.4 kB]
Get: 90 http://deb.debian.org/debian bullseye/main i386 libxml2-dev i386 2.9.10+dfsg-6.7+deb11u4 [849 kB]
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Unpacking libxml2-dev:i386 (2.9.10+dfsg-6.7+deb11u4) ...
Setting up libexpat1:i386 (2.2.10-2+deb11u5) ...
Setting up libpipeline1:i386 (1.5.3-1) ...
Setting up libgraphite2-3:i386 (1.3.14-1) ...
Setting up liblcms2-2:i386 (2.12~rc1-2) ...
Setting up bsdextrautils (2.36.1-8+deb11u1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up hdf5-helpers (1.10.6+repack-4+deb11u1) ...
Setting up java-common (0.72) ...
Setting up libicu67:i386 (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3+deb11u1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:i386 (2.66.8-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.3.4) ...
Setting up libbrotli1:i386 (1.0.9-2+b2) ...
Setting up libmagic1:i386 (1:5.39-3+deb11u1) ...
Setting up libngs-sdk2:i386 (2.10.9-1) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3+deb11u1) ...
Setting up libmagic-dev:i386 (1:5.39-3+deb11u1) ...
Setting up libaec0:i386 (1.0.4-1) ...
Setting up libasound2-data (1.2.4-1.1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ...
Setting up libjpeg62-turbo-dev:i386 (1:2.0.6-4) ...
Setting up libnspr4:i386 (2:4.29-1) ...
Setting up libavahi-common-data:i386 (0.8-5+deb11u2) ...
Setting up libdbus-1-3:i386 (1.12.28-0+deb11u1) ...
Setting up libsigsegv2:i386 (2.13-1) ...
Setting up libpng16-16:i386 (1.6.37-3) ...
Setting up autopoint (0.21-4) ...
Setting up icu-devtools (67.1-7) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up d-shlibs (0.98) ...
Setting up libngs-sdk-dev:i386 (2.10.9-1) ...
Setting up libpcsclite1:i386 (1.9.1-1) ...
Setting up libgfortran5:i386 (10.2.1-6) ...
Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2+deb11u2) ...
Setting up sensible-utils (0.0.14) ...
Setting up libuchardet0:i386 (0.0.7-1) ...
Setting up libasound2:i386 (1.2.4-1.1) ...
Setting up libmbedcrypto3:i386 (2.16.9-0.1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libngs-java:i386 (2.10.9-1) ...
Setting up openssl (1.1.1w-0+deb11u1) ...
Setting up libelf1:i386 (0.183-1) ...
Setting up libicu-dev:i386 (67.1-7) ...
Setting up libxml2:i386 (2.9.10+dfsg-6.7+deb11u4) ...
Setting up libsz2:i386 (1.0.4-1) ...
Setting up libbz2-dev:i386 (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up libmbedx509-0:i386 (2.16.9-0.1) ...
Setting up libmbedtls12:i386 (2.16.9-0.1) ...
Setting up libaec-dev:i386 (1.0.4-1) ...
Setting up libavahi-common3:i386 (0.8-5+deb11u2) ...
Setting up libjpeg-dev:i386 (1:2.0.6-4) ...
Setting up m4 (1.4.18-5) ...
Setting up libnss3:i386 (2:3.61-1+deb11u3) ...
Setting up libmbedtls-dev:i386 (2.16.9-0.1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libxml2-dev:i386 (2.9.10+dfsg-6.7+deb11u4) ...
Setting up libfreetype6:i386 (2.10.4+dfsg-1+deb11u1) ...
Setting up ucf (3.0043) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up libhdf5-103-1:i386 (1.10.6+repack-4+deb11u1) ...
Setting up dwz (0.13+20210201-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up libhdf5-cpp-103-1:i386 (1.10.6+repack-4+deb11u1) ...
Setting up libharfbuzz0b:i386 (2.7.4-1) ...
Setting up libavahi-client3:i386 (0.8-5+deb11u2) ...
Setting up libhdf5-hl-100:i386 (1.10.6+repack-4+deb11u1) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libhdf5-hl-cpp-100:i386 (1.10.6+repack-4+deb11u1) ...
Setting up libhdf5-fortran-102:i386 (1.10.6+repack-4+deb11u1) ...
Setting up libcups2:i386 (2.3.3op2-3+deb11u6) ...
Setting up libhdf5-hl-fortran-100:i386 (1.10.6+repack-4+deb11u1) ...
Setting up libfontconfig1:i386 (2.13.1-4.2) ...
Setting up debhelper (13.3.4) ...
Setting up libhdf5-dev (1.10.6+repack-4+deb11u1) ...
update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up default-jre-headless (2:1.11-72) ...
Setting up openjdk-11-jre-headless:i386 (11.0.20+8-1~deb11u1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
OpenJDK Client VM warning: Ignoring option PermSize; support was removed in 8.0
Setting up openjdk-11-jdk-headless:i386 (11.0.20+8-1~deb11u1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jdk-headless (2:1.11-72) ...
Setting up ca-certificates-java (20190909+deb11u1) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:Secure_Global_CA.pem
Adding debian:GTS_Root_R1.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:EC-ACC.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:Certigna.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:GTS_Root_R3.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:SecureTrust_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GTS_Root_R2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Izenpe.com.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
done.
Processing triggers for libc-bin (2.31-13+deb11u6) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/76220/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for bullseye
I: user script /srv/workspace/pbuilder/76220/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/ncbi-vdb-2.10.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-vdb_2.10.9+dfsg-2_source.changes
dpkg-buildpackage: info: source package ncbi-vdb
dpkg-buildpackage: info: source version 2.10.9+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Aaron M. Ucko <ucko@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg'
if [ -e ngs-sdk/Makefile.config.linux.i686 ] ; then \
dh_auto_clean ; \
fi
rm -rf ncbi-vdb/i386-linux-gnu
rm -f libs/ngs-jni/jni.h
rm -f libs/ngs-jni/jni_md.h
rm -f build/ld.linux.exe_cmd.sh
make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg'
# that's no standard configure script lacking support of default options
# The build system shamelessly ignores those options like
# --with-ngs-java-prefix=/usr/share/java
# so we need to go with patches. The options are specified anyway.
ln -s /usr/lib/jvm/default-java/include/jni.h libs/ngs-jni
ln -s /usr/lib/jvm/default-java/include/linux/jni_md.h libs/ngs-jni
./configure --build=i386-linux-gnu --prefix=/usr --build-prefix=/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/debian/tmp/usr --with-ngs-sdk-prefix=/usr --with-debug --with-ngs-java-prefix=/usr/share/java
Configuring NCBI-VDB package
checking system type... Linux
checking OS distributor...
checking machine architecture... x86_64
checking for supported architecture... x86_64 (64 bits) is supported
checking for supported OS... Linux (linux) is supported
checking for supported tool chain... gcc tool chain is supported
checking for g++... yes
checking for Python 3... no
checking whether gcc accepts -Wno-array-bounds... yes
checking whether g++ accepts -static-libstdc++... yes
checking for fuse library... <stdin>:1:10: fatal error: fuse.h: No such file or directory
compilation terminated.
running echo -e '#include <fuse.h> \n int main() { fuse_get_context(); }\n' | gcc -xc -D_FILE_OFFSET_BITS=64 -I/usr/include - -lfuse
no
checking for hdf5 library...
running echo -e '#include <hdf5/serial/hdf5.h> \n int main() { H5close (); }\n' | gcc -xc -I/usr/include - -lhdf5_serial -Wl,-Bdynamic -ldl -lm -lz
yes
HAVE_HDF5 = 1
HDF5_INCDIR = /usr/include
checking for magic library...
running echo -e '#include <magic.h> \n int main() { magic_open (0); }\n' | gcc -xc -I/usr/include - -lmagic
yes
HAVE_MAGIC = 1
MAGIC_INCDIR = /usr/include
checking for xml2 library...
running echo -e '#include <libxml/xmlreader.h>\nint main() { xmlInitParser ( ); }\n' | gcc -xc -I/usr/include/libxml2 - -lxml2
yes
HAVE_XML2 = 1
XML2_INCDIR = /usr/include/libxml2
checking for ngs-sdk package...
includes... /usr
libraries...
checking /usr/lib/i386-linux-gnu/libngs-sdk.so
/usr/lib/i386-linux-gnu
includes: /usr/include
libraries: /usr/lib/i386-linux-gnu
checking for ngs-java package...
jar... (seeking for ngs-java.jar in dir /usr/share/java)/usr/share/java/ngs-java.jar
jar: /usr/share/java/ngs-java-2.10.9.jar
configure: creating 'build/ld.linux.exe_cmd.sh'
configure: creating 'build/Makefile.config.linux.x86_64'
configure: creating 'Makefile.config'
configure: creating 'reconfigure'
build type: debug
build prefix: /build/reproducible-path/ncbi-vdb-2.10.9+dfsg/debian/tmp/usr/ncbi-vdb
build output path: /build/reproducible-path/ncbi-vdb-2.10.9+dfsg/debian/tmp/usr/ncbi-vdb/linux/gcc/x86_64/dbg
includedir: /usr/include
bindir: /usr/bin
libdir: /usr/lib
CC = gcc -c
CPP = g++
configured with: "'--build=i386-linux-gnu' '--prefix=/usr' '--build-prefix=/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/debian/tmp/usr' '--with-ngs-sdk-prefix=/usr' '--with-debug' '--with-ngs-java-prefix=/usr/share/java'"
# no idea how to convince configure script to use the correct include dir so patching result afterwards
sed -i 's?HDF5_INCDIR = /usr/include?&/hdf5/serial?' build/Makefile.config*
make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg'
dh_auto_build --no-parallel
make -j1
make[2]: Entering directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg'
make[3]: Entering directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs'
make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc'
make[5]: Entering directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/debian/tmp/usr/ncbi-vdb/linux/gcc/x86_64/dbg/obj/libs/kfc'
gcc -c -std=c11 -D_DEBUGGING -g -std=c11 -pedantic -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/ext -I/usr/include -I. -MD -o refcount.pic.o -fPIC -Wall -Wno-long-long -Wno-variadic-macros -Wno-variadic-macros -fno-strict-aliasing -fstack-protector -Wa,--noexecstack -Wall -D_LIBRARY /build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/refcount.c -D__mod_name__=libs/kfc -D__file_name__=refcount -D__file_ext__=c
gcc -c -std=c11 -D_DEBUGGING -g -std=c11 -pedantic -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/ext -I/usr/include -I. -MD -o tstate.pic.o -fPIC -Wall -Wno-long-long -Wno-variadic-macros -Wno-variadic-macros -fno-strict-aliasing -fstack-protector -Wa,--noexecstack -Wall -D_LIBRARY /build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/tstate.c -D__mod_name__=libs/kfc -D__file_name__=tstate -D__file_ext__=c
gcc -c -std=c11 -D_DEBUGGING -g -std=c11 -pedantic -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/ext -I/usr/include -I. -MD -o sysrsrc.pic.o -fPIC -Wall -Wno-long-long -Wno-variadic-macros -Wno-variadic-macros -fno-strict-aliasing -fstack-protector -Wa,--noexecstack -Wall -D_LIBRARY /build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/unix/sysrsrc.c -D__mod_name__=libs/kfc -D__file_name__=sysrsrc -D__file_ext__=c
gcc -c -std=c11 -D_DEBUGGING -g -std=c11 -pedantic -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/ext -I/usr/include -I. -MD -o rsrc.pic.o -fPIC -Wall -Wno-long-long -Wno-variadic-macros -Wno-variadic-macros -fno-strict-aliasing -fstack-protector -Wa,--noexecstack -Wall -D_LIBRARY /build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/rsrc.c -D__mod_name__=libs/kfc -D__file_name__=rsrc -D__file_ext__=c
gcc -c -std=c11 -D_DEBUGGING -g -std=c11 -pedantic -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/ext -I/usr/include -I. -MD -o vtbl.pic.o -fPIC -Wall -Wno-long-long -Wno-variadic-macros -Wno-variadic-macros -fno-strict-aliasing -fstack-protector -Wa,--noexecstack -Wall -D_LIBRARY /build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc/vtbl.c -D__mod_name__=libs/kfc -D__file_name__=vtbl -D__file_ext__=c
/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc/x86_64/atomic.h: Assembler messages:
/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/interfaces/cc/gcc/x86_64/atomic.h:117: Error: bad register name `%rsi'
make[5]: *** [/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/build/Makefile.rules:46: vtbl.pic.o] Error 1
make[5]: Leaving directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/debian/tmp/usr/ncbi-vdb/linux/gcc/x86_64/dbg/obj/libs/kfc'
make[4]: *** [/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/build/Makefile.env:141: stdcompile] Error 2
make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs/kfc'
make[3]: *** [Makefile:83: kfc] Error 2
make[3]: Leaving directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg/libs'
make[2]: *** [Makefile:47: libs] Error 2
make[2]: Leaving directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg'
dh_auto_build: error: make -j1 returned exit code 2
make[1]: *** [debian/rules:51: override_dh_auto_build] Error 25
make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-2.10.9+dfsg'
make: *** [debian/rules:28: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
I: copying local configuration
E: Failed autobuilding of package
I: user script /srv/workspace/pbuilder/76220/tmp/hooks/C01_cleanup starting
debug output: disk usage on i-capture-the-hostname at Thu Feb 13 17:17:37 UTC 2025
Filesystem Size Used Avail Use% Mounted on
tmpfs 3.9G 0 3.9G 0% /dev/shm
I: user script /srv/workspace/pbuilder/76220/tmp/hooks/C01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/76220 and its subdirectories