I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 15 15:29:35 +14 2022 I: pbuilder-time-stamp: 1657848575 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [plink1.9_1.90~b6.21-201019-1.dsc] I: copying [./plink1.9_1.90~b6.21-201019.orig.tar.xz] I: copying [./plink1.9_1.90~b6.21-201019-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.9XMT4tCc/trustedkeys.kbx': General error gpgv: Signature made Wed Nov 11 23:48:31 2020 +14 gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plink1.9_1.90~b6.21-201019-1.dsc dpkg-source: info: extracting plink1.9 in plink1.9-1.90~b6.21-201019 dpkg-source: info: unpacking plink1.9_1.90~b6.21-201019.orig.tar.xz dpkg-source: info: unpacking plink1.9_1.90~b6.21-201019-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25933/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/25933/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/25933/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=bd4dd8dbb19c44e6b7c2b63843fcfffa LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=25933 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Tj3FKwIxA0/pbuilderrc_uPkL --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Tj3FKwIxA0/b2 --logfile b2/build.log --extrapackages usrmerge plink1.9_1.90~b6.21-201019-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 25 2021 bash -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash -rwxr-xr-x 1 root root 124904 Sep 23 2020 date -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd -rwxr-xr-x 1 root root 100752 Sep 23 2020 df -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln -rwxr-xr-x 1 root root 55572 Feb 8 2020 login -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 8 2021 more -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Feb 25 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 15 15:29 sh -> bash lrwxrwxrwx 1 root root 4 Jul 14 05:46 sh.distrib -> dash -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty -rwsr-xr-x 1 root root 79396 Feb 8 2021 su -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch -rwxr-xr-x 1 root root 34664 Sep 23 2020 true -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/25933/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libatlas-base-dev, liblapack-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libatlas-base-dev; however: Package libatlas-base-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libatlas-base-dev{a} libatlas3-base{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 30.9 MB of archives. After unpacking 133 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libatlas3-base i386 3.10.3-10 [2811 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libatlas-base-dev i386 3.10.3-10 [2986 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 liblapack-dev i386 3.9.0-3 [3759 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Fetched 30.9 MB in 0s (92.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../07-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../10-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../25-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../31-libgfortran5_10.2.1-6_i386.deb ... Unpacking libgfortran5:i386 (10.2.1-6) ... Selecting previously unselected package libatlas3-base:i386. Preparing to unpack .../32-libatlas3-base_3.10.3-10_i386.deb ... Unpacking libatlas3-base:i386 (3.10.3-10) ... Selecting previously unselected package libatlas-base-dev:i386. Preparing to unpack .../33-libatlas-base-dev_3.10.3-10_i386.deb ... Unpacking libatlas-base-dev:i386 (3.10.3-10) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../34-liblapack3_3.9.0-3_i386.deb ... Unpacking liblapack3:i386 (3.9.0-3) ... Selecting previously unselected package liblapack-dev:i386. Preparing to unpack .../35-liblapack-dev_3.9.0-3_i386.deb ... Unpacking liblapack-dev:i386 (3.9.0-3) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../36-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libatlas3-base:i386 (3.10.3-10) ... update-alternatives: using /usr/lib/i386-linux-gnu/atlas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/atlas/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up libatlas-base-dev:i386 (3.10.3-10) ... update-alternatives: using /usr/lib/i386-linux-gnu/atlas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/atlas/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up liblapack3:i386 (3.9.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up liblapack-dev:i386 (3.9.0-3) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (5103 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21794 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package I: Running cd /build/plink1.9-1.90~b6.21-201019/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b6.21-201019-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/plink1.9-1.90~b6.21-201019' dh_auto_clean make -j18 clean make[2]: Entering directory '/build/plink1.9-1.90~b6.21-201019' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/plink1.9-1.90~b6.21-201019' rm -f plink1.9 rm -f plink1.9.1 make[1]: Leaving directory '/build/plink1.9-1.90~b6.21-201019' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/plink1.9-1.90~b6.21-201019' dh_auto_build make -j18 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/plink1.9-1.90~b6.21-201019' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_assoc.c -o plink_assoc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_calc.c -o plink_calc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_cluster.c -o plink_cluster.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_cnv.c -o plink_cnv.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_common.c -o plink_common.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_data.c -o plink_data.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_dosage.c -o plink_dosage.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_family.c -o plink_family.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_filter.c -o plink_filter.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_glm.c -o plink_glm.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_help.c -o plink_help.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_ld.c -o plink_ld.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_misc.c -o plink_misc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_perm.c -o plink_perm.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_set.c -o plink_set.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security plink_stats.c -o plink_stats.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security SFMT.c -o SFMT.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security dcdflib.c -o dcdflib.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security pigz.c -o pigz.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security yarn.c -o yarn.o g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security hfile.c -o hfile.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -fdebug-prefix-map=/build/plink1.9-1.90~b6.21-201019=. -fstack-protector-strong -Wformat -Werror=format-security bgzf.c -o bgzf.o In file included from plink_data.c:18: plink_data.c: In function 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)': plink_data.c:5805:17: warning: '%s' directive output between 9 and 2147483645 bytes may cause result to exceed 'INT_MAX' [-Wformat-overflow=] 5805 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW' 998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:5805:40: note: format string is defined here 5805 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname); | ^~ In file included from /usr/include/stdio.h:867, from plink_common.h:25, from plink_data.c:18: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 118 and 2147483754 bytes into a destination of size 4294967295 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from plink_common.h:27, from plink_glm.c:18: In function 'void* memcpy(void*, const void*, size_t)', inlined from 'int32_t glm_linear_nosnp(pthread_t*, FILE*, uintptr_t, char*, char*, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, double, uintptr_t, uintptr_t*, uintptr_t, char*, uintptr_t, uintptr_t*, char*, char*, Chrom_info*, uintptr_t, uintptr_t, uintptr_t*, uint32_t, uint32_t*, uint32_t*, uint32_t, uint32_t, uintptr_t*, double*, uintptr_t, char*, uintptr_t, uintptr_t*, double*, uintptr_t*, uintptr_t*, uint32_t, uint32_t, Set_info*)' at plink_glm.c:7848:8: /usr/include/i386-linux-gnu/bits/string_fortified.h:34:33: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' reading 17 bytes from a region of size 16 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from plink_data.c:18: plink_data.c: In function 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)': plink_data.c:8010:17: warning: '%s' directive output between 5 and 2147483645 bytes may cause result to exceed 'INT_MAX' [-Wformat-overflow=] 8010 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW' 998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:8010:40: note: format string is defined here 8010 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); | ^~ In file included from /usr/include/stdio.h:867, from plink_common.h:25, from plink_data.c:18: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 30 and 2147483670 bytes into a destination of size 4294967295 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'int32_t glm_logistic_nosnp(pthread_t*, FILE*, uintptr_t, char*, char*, uint32_t, double, uint32_t, uint32_t, Range_list*, Range_list*, double, double, double, double, uintptr_t, uintptr_t*, uintptr_t, char*, uintptr_t, uintptr_t*, char*, char*, Chrom_info*, uintptr_t, uintptr_t, uintptr_t*, uint32_t, uint32_t*, uint32_t*, uint32_t, uint32_t, uintptr_t*, uintptr_t*, uintptr_t, char*, uintptr_t, uintptr_t*, double*, uintptr_t*, uintptr_t*, uint32_t, uint32_t, Set_info*)' at plink_glm.c:8633:8: /usr/include/i386-linux-gnu/bits/string_fortified.h:34:33: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' reading 17 bytes from a region of size 16 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink.c: In function 'int32_t main(int32_t, char**)': plink.c:6854:25: warning: 'int __builtin_memcmp_eq(const void*, const void*, unsigned int)' reading 22 bytes from a region of size 19 [-Wstringop-overflow=] 6854 | } else if (!memcmp(argptr2, "lip-scan-window-kb", 22)) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink.c:10760:25: warning: 'int __builtin_memcmp_eq(const void*, const void*, unsigned int)' reading 19 bytes from a region of size 16 [-Wstringop-overflow=] 10760 | } else if (!memcmp(argptr2, "ead-genome-list", 19)) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from plink_data.c:18: plink_data.c: In function 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)': plink_data.c:14555:22: warning: '%s' directive output between 9 and 2147483645 bytes may cause result to exceed 'INT_MAX' [-Wformat-overflow=] 14555 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:998:47: note: in definition of macro 'LOGERRPRINTFWW' 998 | #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:14555:45: note: format string is defined here 14555 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); | ^~ In file included from /usr/include/stdio.h:867, from plink_common.h:25, from plink_data.c:18: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 128 and 2147483764 bytes into a destination of size 4294967295 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -L/usr/lib64/atlas -llapack -lblas -lcblas -latlas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink make[2]: Leaving directory '/build/plink1.9-1.90~b6.21-201019' mv plink plink1.9 make[1]: Leaving directory '/build/plink1.9-1.90~b6.21-201019' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/plink1.9-1.90~b6.21-201019' dh_installchangelogs debian/upstream.docs/upstream.changelog make[1]: Leaving directory '/build/plink1.9-1.90~b6.21-201019' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/plink1.9-1.90~b6.21-201019' dh_installman debian/plink1.9.1 make[1]: Leaving directory '/build/plink1.9-1.90~b6.21-201019' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b6.21-201019-1_i386.deb'. dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b6.21-201019-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../plink1.9_1.90~b6.21-201019-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/25933/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/25933/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25933 and its subdirectories I: Current time: Fri Jul 15 15:30:28 +14 2022 I: pbuilder-time-stamp: 1657848628