I: pbuilder: network access will be disabled during build
I: Current time: Thu Feb 20 13:06:12 +14 2025
I: pbuilder-time-stamp: 1740006372
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [pymol_2.4.0+dfsg-2.dsc]
I: copying [./pymol_2.4.0+dfsg.orig.tar.xz]
I: copying [./pymol_2.4.0+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.eNYSU0Lq/trustedkeys.kbx': General error
gpgv: Signature made Sat May 22 11:26:38 2021
gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pymol_2.4.0+dfsg-2.dsc
dpkg-source: info: extracting pymol in pymol-2.4.0+dfsg
dpkg-source: info: unpacking pymol_2.4.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking pymol_2.4.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 02_test-suite.patch
dpkg-source: info: applying 03_povray.patch
dpkg-source: info: applying 22_fix_pymol_import.patch
dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch
dpkg-source: info: applying 28_no_data_install_in_python_path.patch
dpkg-source: info: applying 31_fix_format-security.patch
dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch
dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch
dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch
dpkg-source: info: applying 40_mstop_movies.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/101209/tmp/hooks/D01_modify_environment starting
debug: Running on ionos6-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Feb 19 23:06 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/101209/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/101209/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
BASH_VERSION='5.1.4(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=i386
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 '
DIRSTACK=()
DISTRIBUTION=bullseye
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=i686
HOST_ARCH=i386
IFS='
'
INVOCATION_ID=4751060142ef4e06a4296f2eb96977ad
LANG=C
LANGUAGE=de_CH:de
LC_ALL=C
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
MACHTYPE=i686-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=101209
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.H0cz9v33/pbuilderrc_VdeA --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.H0cz9v33/b2 --logfile b2/build.log pymol_2.4.0+dfsg-2.dsc'
SUDO_GID=112
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://85.184.249.68:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux
I: ls -l /bin
total 5776
-rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 38824 Sep 22 2020 cat
-rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 75752 Sep 22 2020 chown
-rwxr-xr-x 1 root root 157960 Sep 22 2020 cp
-rwxr-xr-x 1 root root 128724 Dec 10 2020 dash
-rwxr-xr-x 1 root root 124904 Sep 22 2020 date
-rwxr-xr-x 1 root root 92172 Sep 22 2020 dd
-rwxr-xr-x 1 root root 100752 Sep 22 2020 df
-rwxr-xr-x 1 root root 153964 Sep 22 2020 dir
-rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg
lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname
-rwxr-xr-x 1 root root 34664 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Jan 25 2023 egrep
-rwxr-xr-x 1 root root 34664 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep
-rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt
-rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount
-rwxr-xr-x 1 root root 210488 Jan 25 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 21916 Nov 7 2019 hostname
-rwxr-xr-x 1 root root 83980 Sep 22 2020 ln
-rwxr-xr-x 1 root root 55572 Feb 7 2020 login
-rwxr-xr-x 1 root root 153964 Sep 22 2020 ls
-rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk
-rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 58920 Jan 20 2022 more
-rwsr-xr-x 1 root root 50720 Jan 20 2022 mount
-rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint
-rwxr-xr-x 1 root root 157996 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash
-rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 75720 Sep 22 2020 rm
-rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 125036 Dec 22 2018 sed
lrwxrwxrwx 1 root root 9 Feb 19 23:06 sh -> /bin/bash
-rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 83880 Sep 22 2020 stty
-rwsr-xr-x 1 root root 79396 Jan 20 2022 su
-rwxr-xr-x 1 root root 34696 Sep 22 2020 sync
-rwxr-xr-x 1 root root 602584 Feb 17 2021 tar
-rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 108520 Sep 22 2020 touch
-rwxr-xr-x 1 root root 34664 Sep 22 2020 true
-rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Jan 20 2022 umount
-rwxr-xr-x 1 root root 34664 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl
lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/101209/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 17763 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on freeglut3-dev; however:
Package freeglut3-dev is not installed.
pbuilder-satisfydepends-dummy depends on libfreetype6-dev; however:
Package libfreetype6-dev is not installed.
pbuilder-satisfydepends-dummy depends on libglew1.5-dev; however:
Package libglew1.5-dev is not installed.
pbuilder-satisfydepends-dummy depends on libglm-dev; however:
Package libglm-dev is not installed.
pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however:
Package libnetcdf-dev is not installed.
pbuilder-satisfydepends-dummy depends on libpng-dev; however:
Package libpng-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
Package python3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-opengl; however:
Package python3-opengl is not installed.
pbuilder-satisfydepends-dummy depends on python3-pyqt5; however:
Package python3-pyqt5 is not installed.
pbuilder-satisfydepends-dummy depends on python3-pyqt5.qtopengl; however:
Package python3-pyqt5.qtopengl is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
Package texlive-latex-base is not installed.
pbuilder-satisfydepends-dummy depends on libxml2-dev; however:
Package libxml2-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} freeglut3{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcups2{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdbus-1-3{a} libdebhelper-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype-dev{a} libfreetype6{a} libfreetype6-dev{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.1{a} libglib2.0-0{a} libglm-dev{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libice-dev{a} libice6{a} libicu-dev{a} libicu67{a} libinput-bin{a} libinput10{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libkpathsea6{a} liblapack3{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmd4c0{a} libmpdec3{a} libmtdev1{a} libnetcdf-dev{a} libnetcdf18{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5printsupport5{a} libqt5sql5{a} libqt5test5{a} libqt5widgets5{a} libqt5xml5{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libtool{a} libuchardet0{a} libvulkan1{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxi6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-opengl{a} python3-pkg-resources{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-pyqt5.sip{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} tzdata{a} ucf{a} x11-common{a} x11proto-dev{a} x11proto-xext-dev{a} xdg-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl dbus dvisvgm javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules libwacom-bin libx11-protocol-perl lmodern lynx mesa-vulkan-drivers pkg-config pkgconf publicsuffix qt5-gtk-platformtheme qttranslations5-l10n wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 255 newly installed, 0 to remove and 0 not upgraded.
Need to get 170 MB of archives. After unpacking 633 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8+deb11u1 [149 kB]
Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB]
Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB]
Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB]
Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB]
Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2+deb11u5 [101 kB]
Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB]
Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB]
Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB]
Get: 11 http://deb.debian.org/debian bullseye/main i386 tzdata all 2021a-1+deb11u10 [286 kB]
Get: 12 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB]
Get: 13 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB]
Get: 14 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB]
Get: 15 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB]
Get: 16 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB]
Get: 17 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB]
Get: 18 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB]
Get: 19 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB]
Get: 20 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB]
Get: 21 http://deb.debian.org/debian bullseye/main i386 tex-common all 6.16 [53.7 kB]
Get: 22 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3+deb11u1 [273 kB]
Get: 23 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3+deb11u1 [135 kB]
Get: 24 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3+deb11u1 [69.2 kB]
Get: 25 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB]
Get: 26 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB]
Get: 27 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB]
Get: 28 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB]
Get: 29 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 30 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB]
Get: 31 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB]
Get: 32 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB]
Get: 33 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB]
Get: 34 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 35 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 36 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 37 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 38 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 39 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB]
Get: 40 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB]
Get: 41 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB]
Get: 42 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7+deb11u4 [728 kB]
Get: 43 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB]
Get: 44 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 45 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 46 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB]
Get: 47 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB]
Get: 48 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB]
Get: 49 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB]
Get: 50 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB]
Get: 51 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB]
Get: 52 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1+deb11u1 [430 kB]
Get: 53 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB]
Get: 54 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB]
Get: 55 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB]
Get: 56 http://deb.debian.org/debian bullseye/main i386 fontconfig i386 2.13.1-4.2 [417 kB]
Get: 57 http://deb.debian.org/debian bullseye/main i386 fonts-lmodern all 2.004.5-6.1 [4540 kB]
Get: 58 http://deb.debian.org/debian bullseye/main i386 libglvnd0 i386 1.3.2-1 [44.1 kB]
Get: 59 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 60 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB]
Get: 61 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1+deb11u1 [111 kB]
Get: 62 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 63 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB]
Get: 64 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.2-1+deb11u1 [311 kB]
Get: 65 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.2-1+deb11u1 [796 kB]
Get: 66 http://deb.debian.org/debian bullseye/main i386 libdrm-common all 2.4.104-1 [14.9 kB]
Get: 67 http://deb.debian.org/debian bullseye/main i386 libdrm2 i386 2.4.104-1 [44.3 kB]
Get: 68 http://deb.debian.org/debian bullseye/main i386 libglapi-mesa i386 20.3.5-1 [71.9 kB]
Get: 69 http://deb.debian.org/debian bullseye/main i386 libx11-xcb1 i386 2:1.7.2-1+deb11u1 [203 kB]
Get: 70 http://deb.debian.org/debian bullseye/main i386 libxcb-dri2-0 i386 1.14-3 [103 kB]
Get: 71 http://deb.debian.org/debian bullseye/main i386 libxcb-dri3-0 i386 1.14-3 [103 kB]
Get: 72 http://deb.debian.org/debian bullseye/main i386 libxcb-glx0 i386 1.14-3 [120 kB]
Get: 73 http://deb.debian.org/debian bullseye/main i386 libxcb-present0 i386 1.14-3 [101 kB]
Get: 74 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB]
Get: 75 http://deb.debian.org/debian bullseye/main i386 libxcb-sync1 i386 1.14-3 [105 kB]
Get: 76 http://deb.debian.org/debian bullseye/main i386 libxcb-xfixes0 i386 1.14-3 [105 kB]
Get: 77 http://deb.debian.org/debian bullseye/main i386 libxdamage1 i386 1:1.1.5-2 [15.9 kB]
Get: 78 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB]
Get: 79 http://deb.debian.org/debian bullseye/main i386 libxfixes3 i386 1:5.0.3-2 [22.6 kB]
Get: 80 http://deb.debian.org/debian bullseye/main i386 libxshmfence1 i386 1.3-1 [8976 B]
Get: 81 http://deb.debian.org/debian bullseye/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB]
Get: 82 http://deb.debian.org/debian bullseye/main i386 libdrm-amdgpu1 i386 2.4.104-1 [31.5 kB]
Get: 83 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB]
Get: 84 http://deb.debian.org/debian bullseye/main i386 libdrm-intel1 i386 2.4.104-1 [74.5 kB]
Get: 85 http://deb.debian.org/debian bullseye/main i386 libdrm-nouveau2 i386 2.4.104-1 [28.5 kB]
Get: 86 http://deb.debian.org/debian bullseye/main i386 libdrm-radeon1 i386 2.4.104-1 [31.4 kB]
Get: 87 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB]
Get: 88 http://deb.debian.org/debian bullseye/main i386 libz3-4 i386 4.8.10-1 [7737 kB]
Get: 89 http://deb.debian.org/debian bullseye/main i386 libllvm11 i386 1:11.0.1-2 [17.7 MB]
Get: 90 http://deb.debian.org/debian bullseye/main i386 libsensors-config all 1:3.6.0-7 [32.3 kB]
Get: 91 http://deb.debian.org/debian bullseye/main i386 libsensors5 i386 1:3.6.0-7 [53.2 kB]
Get: 92 http://deb.debian.org/debian bullseye/main i386 libvulkan1 i386 1.2.162.0-1 [110 kB]
Get: 93 http://deb.debian.org/debian bullseye/main i386 libgl1-mesa-dri i386 20.3.5-1 [9948 kB]
Get: 94 http://deb.debian.org/debian bullseye/main i386 libglx-mesa0 i386 20.3.5-1 [195 kB]
Get: 95 http://deb.debian.org/debian bullseye/main i386 libglx0 i386 1.3.2-1 [39.1 kB]
Get: 96 http://deb.debian.org/debian bullseye/main i386 libgl1 i386 1.3.2-1 [83.6 kB]
Get: 97 http://deb.debian.org/debian bullseye/main i386 libxi6 i386 2:1.7.10-1 [85.1 kB]
Get: 98 http://deb.debian.org/debian bullseye/main i386 freeglut3 i386 2.8.1-6 [124 kB]
Get: 99 http://deb.debian.org/debian bullseye/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 100 http://deb.debian.org/debian bullseye/main i386 x11proto-dev all 2020.1-1 [594 kB]
Get: 101 http://deb.debian.org/debian bullseye/main i386 libxau-dev i386 1:1.0.9-1 [23.3 kB]
Get: 102 http://deb.debian.org/debian bullseye/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB]
Get: 103 http://deb.debian.org/debian bullseye/main i386 xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 104 http://deb.debian.org/debian bullseye/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B]
Get: 105 http://deb.debian.org/debian bullseye/main i386 libxcb1-dev i386 1.14-3 [181 kB]
Get: 106 http://deb.debian.org/debian bullseye/main i386 libx11-dev i386 2:1.7.2-1+deb11u1 [874 kB]
Get: 107 http://deb.debian.org/debian bullseye/main i386 libglx-dev i386 1.3.2-1 [16.3 kB]
Get: 108 http://deb.debian.org/debian bullseye/main i386 libgl-dev i386 1.3.2-1 [100 kB]
Get: 109 http://deb.debian.org/debian bullseye/main i386 libwayland-server0 i386 1.18.0-2~exp1.1 [36.0 kB]
Get: 110 http://deb.debian.org/debian bullseye/main i386 libgbm1 i386 20.3.5-1 [74.7 kB]
Get: 111 http://deb.debian.org/debian bullseye/main i386 libwayland-client0 i386 1.18.0-2~exp1.1 [27.7 kB]
Get: 112 http://deb.debian.org/debian bullseye/main i386 libegl-mesa0 i386 20.3.5-1 [148 kB]
Get: 113 http://deb.debian.org/debian bullseye/main i386 libegl1 i386 1.3.2-1 [36.7 kB]
Get: 114 http://deb.debian.org/debian bullseye/main i386 libegl-dev i386 1.3.2-1 [19.5 kB]
Get: 115 http://deb.debian.org/debian bullseye/main i386 libgles1 i386 1.3.2-1 [12.5 kB]
Get: 116 http://deb.debian.org/debian bullseye/main i386 libgles2 i386 1.3.2-1 [17.3 kB]
Get: 117 http://deb.debian.org/debian bullseye/main i386 libgles-dev i386 1.3.2-1 [50.3 kB]
Get: 118 http://deb.debian.org/debian bullseye/main i386 libopengl0 i386 1.3.2-1 [29.9 kB]
Get: 119 http://deb.debian.org/debian bullseye/main i386 libopengl-dev i386 1.3.2-1 [5868 B]
Get: 120 http://deb.debian.org/debian bullseye/main i386 libglvnd-dev i386 1.3.2-1 [13.9 kB]
Get: 121 http://deb.debian.org/debian bullseye/main i386 libgl1-mesa-dev i386 20.3.5-1 [51.1 kB]
Get: 122 http://deb.debian.org/debian bullseye/main i386 libglu1-mesa i386 9.0.1-1 [178 kB]
Get: 123 http://deb.debian.org/debian bullseye/main i386 libglu1-mesa-dev i386 9.0.1-1 [223 kB]
Get: 124 http://deb.debian.org/debian bullseye/main i386 x11proto-xext-dev all 2020.1-1 [3404 B]
Get: 125 http://deb.debian.org/debian bullseye/main i386 libxext-dev i386 2:1.3.3-1.1 [111 kB]
Get: 126 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB]
Get: 127 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB]
Get: 128 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB]
Get: 129 http://deb.debian.org/debian bullseye/main i386 libxt6 i386 1:1.2.0-1 [195 kB]
Get: 130 http://deb.debian.org/debian bullseye/main i386 libice-dev i386 2:1.0.10-1 [70.5 kB]
Get: 131 http://deb.debian.org/debian bullseye/main i386 libsm-dev i386 2:1.2.3-1 [38.8 kB]
Get: 132 http://deb.debian.org/debian bullseye/main i386 libxt-dev i386 1:1.2.0-1 [421 kB]
Get: 133 http://deb.debian.org/debian bullseye/main i386 freeglut3-dev i386 2.8.1-6 [182 kB]
Get: 134 http://deb.debian.org/debian bullseye/main i386 hdf5-helpers i386 1.10.6+repack-4+deb11u1 [40.4 kB]
Get: 135 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-7 [209 kB]
Get: 136 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB]
Get: 137 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B]
Get: 138 http://deb.debian.org/debian bullseye/main i386 libaec-dev i386 1.0.4-1 [21.5 kB]
Get: 139 http://deb.debian.org/debian bullseye/main i386 libavahi-common-data i386 0.8-5+deb11u2 [124 kB]
Get: 140 http://deb.debian.org/debian bullseye/main i386 libavahi-common3 i386 0.8-5+deb11u2 [60.4 kB]
Get: 141 http://deb.debian.org/debian bullseye/main i386 libdbus-1-3 i386 1.12.28-0+deb11u1 [236 kB]
Get: 142 http://deb.debian.org/debian bullseye/main i386 libavahi-client3 i386 0.8-5+deb11u2 [64.6 kB]
Get: 143 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3+deb11u1 [147 kB]
Get: 144 http://deb.debian.org/debian bullseye/main i386 libbrotli-dev i386 1.0.9-2+b2 [287 kB]
Get: 145 http://deb.debian.org/debian bullseye/main i386 libpixman-1-0 i386 0.40.0-1.1~deb11u1 [545 kB]
Get: 146 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB]
Get: 147 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB]
Get: 148 http://deb.debian.org/debian bullseye/main i386 libcairo2 i386 1.16.0-5 [746 kB]
Get: 149 http://deb.debian.org/debian bullseye/main i386 libcups2 i386 2.3.3op2-3+deb11u6 [367 kB]
Get: 150 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1+deb11u1 [70.1 kB]
Get: 151 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1+deb11u1 [110 kB]
Get: 152 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3+deb11u1 [244 kB]
Get: 153 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB]
Get: 154 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB]
Get: 155 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB]
Get: 156 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB]
Get: 157 http://deb.debian.org/debian bullseye/main i386 libcurl3-gnutls i386 7.74.0-1.3+deb11u9 [374 kB]
Get: 158 http://deb.debian.org/debian bullseye/main i386 libcurl4-gnutls-dev i386 7.74.0-1.3+deb11u9 [477 kB]
Get: 159 http://deb.debian.org/debian bullseye/main i386 libdouble-conversion3 i386 3.1.5-6.1 [44.8 kB]
Get: 160 http://deb.debian.org/debian bullseye/main i386 libevdev2 i386 1.11.0+dfsg-1 [32.4 kB]
Get: 161 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2+deb11u5 [149 kB]
Get: 162 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB]
Get: 163 http://deb.debian.org/debian bullseye/main i386 libpng-dev i386 1.6.37-3 [307 kB]
Get: 164 http://deb.debian.org/debian bullseye/main i386 libfreetype-dev i386 2.10.4+dfsg-1+deb11u1 [589 kB]
Get: 165 http://deb.debian.org/debian bullseye/main i386 libfreetype6-dev i386 2.10.4+dfsg-1+deb11u1 [82.6 kB]
Get: 166 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB]
Get: 167 http://deb.debian.org/debian bullseye/main i386 libglew2.1 i386 2.1.0-4+b1 [154 kB]
Get: 168 http://deb.debian.org/debian bullseye/main i386 libglew-dev i386 2.1.0-4+b1 [141 kB]
Get: 169 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB]
Get: 170 http://deb.debian.org/debian bullseye/main i386 libglm-dev all 0.9.9.8+ds-1 [183 kB]
Get: 171 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 172 http://deb.debian.org/debian bullseye/main i386 libgudev-1.0-0 i386 234-1 [15.2 kB]
Get: 173 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB]
Get: 174 http://deb.debian.org/debian bullseye/main i386 libhdf5-103-1 i386 1.10.6+repack-4+deb11u1 [1160 kB]
Get: 175 http://deb.debian.org/debian bullseye/main i386 libhdf5-cpp-103-1 i386 1.10.6+repack-4+deb11u1 [149 kB]
Get: 176 http://deb.debian.org/debian bullseye/main i386 libhdf5-fortran-102 i386 1.10.6+repack-4+deb11u1 [113 kB]
Get: 177 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-100 i386 1.10.6+repack-4+deb11u1 [93.2 kB]
Get: 178 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-fortran-100 i386 1.10.6+repack-4+deb11u1 [58.6 kB]
Get: 179 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-cpp-100 i386 1.10.6+repack-4+deb11u1 [38.2 kB]
Get: 180 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB]
Get: 181 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB]
Get: 182 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB]
Get: 183 http://deb.debian.org/debian bullseye/main i386 libhdf5-dev i386 1.10.6+repack-4+deb11u1 [2585 kB]
Get: 184 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-7 [9801 kB]
Get: 185 http://deb.debian.org/debian bullseye/main i386 libwacom-common all 1.8-2 [49.7 kB]
Get: 186 http://deb.debian.org/debian bullseye/main i386 libwacom2 i386 1.8-2 [23.0 kB]
Get: 187 http://deb.debian.org/debian bullseye/main i386 libinput-bin i386 1.16.4-3 [23.6 kB]
Get: 188 http://deb.debian.org/debian bullseye/main i386 libmtdev1 i386 1.1.6-1 [23.5 kB]
Get: 189 http://deb.debian.org/debian bullseye/main i386 libinput10 i386 1.16.4-3 [131 kB]
Get: 190 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get: 191 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB]
Get: 192 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB]
Get: 193 http://deb.debian.org/debian bullseye/main i386 libkpathsea6 i386 2020.20200327.54578-7+deb11u1 [176 kB]
Get: 194 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3+deb11u1 [1960 kB]
Get: 195 http://deb.debian.org/debian bullseye/main i386 libmd4c0 i386 0.4.7-2 [44.3 kB]
Get: 196 http://deb.debian.org/debian bullseye/main i386 libnetcdf18 i386 1:4.7.4-1 [436 kB]
Get: 197 http://deb.debian.org/debian bullseye/main i386 libnetcdf-dev i386 1:4.7.4-1 [93.6 kB]
Get: 198 http://deb.debian.org/debian bullseye/main i386 libpaper1 i386 1.1.28+b1 [21.7 kB]
Get: 199 http://deb.debian.org/debian bullseye/main i386 libpaper-utils i386 1.1.28+b1 [18.6 kB]
Get: 200 http://deb.debian.org/debian bullseye/main i386 libpcre2-16-0 i386 10.36-2+deb11u1 [232 kB]
Get: 201 http://deb.debian.org/debian bullseye/main i386 libptexenc1 i386 2020.20200327.54578-7+deb11u1 [65.2 kB]
Get: 202 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB]
Get: 203 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB]
Get: 204 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB]
Get: 205 http://deb.debian.org/debian bullseye/main i386 libpython3-all-dev i386 3.9.2-3 [1068 B]
Get: 206 http://deb.debian.org/debian bullseye/main i386 shared-mime-info i386 2.0-1 [703 kB]
Get: 207 http://deb.debian.org/debian bullseye/main i386 libqt5core5a i386 5.15.2+dfsg-9 [2539 kB]
Get: 208 http://deb.debian.org/debian bullseye/main i386 libqt5dbus5 i386 5.15.2+dfsg-9 [254 kB]
Get: 209 http://deb.debian.org/debian bullseye/main i386 libqt5network5 i386 5.15.2+dfsg-9 [746 kB]
Get: 210 http://deb.debian.org/debian bullseye/main i386 libxcb-icccm4 i386 0.4.1-1.1 [28.1 kB]
Get: 211 http://deb.debian.org/debian bullseye/main i386 libxcb-util1 i386 0.4.0-1+b1 [23.6 kB]
Get: 212 http://deb.debian.org/debian bullseye/main i386 libxcb-image0 i386 0.4.0-1+b3 [24.8 kB]
Get: 213 http://deb.debian.org/debian bullseye/main i386 libxcb-keysyms1 i386 0.4.0-1+b2 [16.7 kB]
Get: 214 http://deb.debian.org/debian bullseye/main i386 libxcb-randr0 i386 1.14-3 [114 kB]
Get: 215 http://deb.debian.org/debian bullseye/main i386 libxcb-render-util0 i386 0.3.9-1+b1 [18.7 kB]
Get: 216 http://deb.debian.org/debian bullseye/main i386 libxcb-shape0 i386 1.14-3 [102 kB]
Get: 217 http://deb.debian.org/debian bullseye/main i386 libxcb-xinerama0 i386 1.14-3 [101 kB]
Get: 218 http://deb.debian.org/debian bullseye/main i386 libxcb-xinput0 i386 1.14-3 [129 kB]
Get: 219 http://deb.debian.org/debian bullseye/main i386 libxcb-xkb1 i386 1.14-3 [127 kB]
Get: 220 http://deb.debian.org/debian bullseye/main i386 xkb-data all 2.29-2 [655 kB]
Get: 221 http://deb.debian.org/debian bullseye/main i386 libxkbcommon0 i386 1.0.3-2 [107 kB]
Get: 222 http://deb.debian.org/debian bullseye/main i386 libxkbcommon-x11-0 i386 1.0.3-2 [17.6 kB]
Get: 223 http://deb.debian.org/debian bullseye/main i386 libqt5gui5 i386 5.15.2+dfsg-9 [5795 kB]
Get: 224 http://deb.debian.org/debian bullseye/main i386 libqt5widgets5 i386 5.15.2+dfsg-9 [2628 kB]
Get: 225 http://deb.debian.org/debian bullseye/main i386 libqt5xml5 i386 5.15.2+dfsg-9 [161 kB]
Get: 226 http://deb.debian.org/debian bullseye/main i386 libqt5designer5 i386 5.15.2-5 [2814 kB]
Get: 227 http://deb.debian.org/debian bullseye/main i386 libqt5sql5 i386 5.15.2+dfsg-9 [156 kB]
Get: 228 http://deb.debian.org/debian bullseye/main i386 libqt5help5 i386 5.15.2-5 [163 kB]
Get: 229 http://deb.debian.org/debian bullseye/main i386 libqt5opengl5 i386 5.15.2+dfsg-9 [188 kB]
Get: 230 http://deb.debian.org/debian bullseye/main i386 libqt5printsupport5 i386 5.15.2+dfsg-9 [239 kB]
Get: 231 http://deb.debian.org/debian bullseye/main i386 libqt5test5 i386 5.15.2+dfsg-9 [176 kB]
Get: 232 http://deb.debian.org/debian bullseye/main i386 libsynctex2 i386 2020.20200327.54578-7+deb11u1 [86.1 kB]
Get: 233 http://deb.debian.org/debian bullseye/main i386 libteckit0 i386 2.5.10+ds1-3 [277 kB]
Get: 234 http://deb.debian.org/debian bullseye/main i386 libtexlua53 i386 2020.20200327.54578-7+deb11u1 [146 kB]
Get: 235 http://deb.debian.org/debian bullseye/main i386 libtexluajit2 i386 2020.20200327.54578-7+deb11u1 [284 kB]
Get: 236 http://deb.debian.org/debian bullseye/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB]
Get: 237 http://deb.debian.org/debian bullseye/main i386 libxpm4 i386 1:3.5.12-1.1~deb11u1 [51.2 kB]
Get: 238 http://deb.debian.org/debian bullseye/main i386 libxaw7 i386 2:1.0.13-1.1 [210 kB]
Get: 239 http://deb.debian.org/debian bullseye/main i386 libxml2-dev i386 2.9.10+dfsg-6.7+deb11u4 [849 kB]
Get: 240 http://deb.debian.org/debian bullseye/main i386 libzzip-0-13 i386 0.13.62-3.3+deb11u1 [57.7 kB]
Get: 241 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B]
Get: 242 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB]
Get: 243 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB]
Get: 244 http://deb.debian.org/debian bullseye/main i386 python3-all-dev i386 3.9.2-3 [1068 B]
Get: 245 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB]
Get: 246 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB]
Get: 247 http://deb.debian.org/debian bullseye/main i386 python3-opengl all 3.1.5+dfsg-1 [610 kB]
Get: 248 http://deb.debian.org/debian bullseye/main i386 python3-pyqt5.sip i386 12.8.1-1+b2 [57.0 kB]
Get: 249 http://deb.debian.org/debian bullseye/main i386 python3-pyqt5 i386 5.15.2+dfsg-3 [2209 kB]
Get: 250 http://deb.debian.org/debian bullseye/main i386 python3-pyqt5.qtopengl i386 5.15.2+dfsg-3 [189 kB]
Get: 251 http://deb.debian.org/debian bullseye/main i386 t1utils i386 1.41-4 [62.3 kB]
Get: 252 http://deb.debian.org/debian bullseye/main i386 texlive-binaries i386 2020.20200327.54578-7+deb11u1 [10.1 MB]
Get: 253 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 254 http://deb.debian.org/debian bullseye/main i386 texlive-base all 2020.20210202-3 [20.8 MB]
Get: 255 http://deb.debian.org/debian bullseye/main i386 texlive-latex-base all 2020.20210202-3 [1120 kB]
Fetched 170 MB in 8s (22.4 MB/s)
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Creating config file /etc/papersize with new version
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Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
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update-language: texlive-base not installed and configured, doing nothing!
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Setting up python3.9 (3.9.2-1) ...
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Regenerating fonts cache... done.
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update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnetcdf-dev (1:4.7.4-1) ...
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Setting up texlive-binaries (2020.20200327.54578-7+deb11u1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libglx-dev:i386 (1.3.2-1) ...
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tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
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tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libgl-dev:i386 (1.3.2-1) ...
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Setting up python3-opengl (3.1.5+dfsg-1) ...
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Setting up python3-numpy (1:1.19.5-1) ...
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Setting up freeglut3-dev:i386 (2.8.1-6) ...
Processing triggers for libc-bin (2.31-13+deb11u6) ...
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Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.25.3-1.1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/101209/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for bullseye
I: user script /srv/workspace/pbuilder/101209/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/pymol-2.4.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pymol_2.4.0+dfsg-2_source.changes
dpkg-buildpackage: info: source package pymol
dpkg-buildpackage: info: source version 2.4.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael Banck <mbanck@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
fakeroot debian/rules clean
dh clean --with python3 --buildsystem pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build' (and everything under it)
'build/bdist.linux-i386' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/pymol-2.4.0+dfsg'
rm -f -r build test/tmp test/cmp generated
dh_clean debian/pymol.launch debian/pymol-ref-card.* \
Rules.make create_shadertext.pyc
make[1]: Leaving directory '/build/reproducible-path/pymol-2.4.0+dfsg'
debian/rules build
dh build --with python3 --buildsystem pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/place.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bonds.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/lst.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mae.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cc1.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/water_residues.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/hetatm.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/gms.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/water_amber.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_residues.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/neighbor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/charge.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/arc.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bond_mmff.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mmd.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cif.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/dictdb.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/brick.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/solvate.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/pkl.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_amber99.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/sdf.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/models.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/bond_amber.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/map.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/gamess1.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mol.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/cpv.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_amber.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/pdb.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/io.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/protein_mmff.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mass.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/xyz.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
copying modules/chempy/mol2.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
copying modules/chempy/mmtf/io.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments
copying modules/chempy/fragments/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast
copying modules/chempy/fast/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/amber.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/realtime.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/state.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
copying modules/chempy/tinker/keyword.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/amber99.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/assign.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
copying modules/chempy/champ/formal_charges.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/util.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/realtime.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/state.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/commands.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
copying modules/chempy/bmin/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pymol2/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
copying modules/pymol2/cmd2.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/keymapping.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/volume.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/builder.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
copying modules/pmg_qt/TextEditor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/Setting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/PMGApp.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/volume.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/Demo.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/SetEditor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
copying modules/pmg_tk/TextEditor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
copying modules/pmg_tk/startup/apbs_tools.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/morphing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/selecting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/monitoring.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/lazyio.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/util.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/viewing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/commanding.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/setting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/externing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/api.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/editing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/querying.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/colorramping.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/creating.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/wizarding.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/shortcut.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/parsing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/experimenting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/keywords.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/_gui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/cmd.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/editor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/checking.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/computing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/seqalign.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/colorprinting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/__main__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/internal.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/moving.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/cgo.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/controlling.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/pymolhttpd.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/parser.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/preset.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/constants_palette.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/helping.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/vfont.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/completing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/constants.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/locking.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/menu.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/gui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/feedingback.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/xray.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/movie.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/keyboard.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/importing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/invocation.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/exporting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/headering.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/fitting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/selector.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/rpc.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/callback.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/povray.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/xwin.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
copying modules/pymol/diagnosing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl
copying modules/pymol/opengl/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut
copying modules/pymol/opengl/glut/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl
copying modules/pymol/opengl/gl/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu
copying modules/pymol/opengl/glu/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/contrib
copying modules/pymol/contrib/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/contrib
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/distance.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/charge.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/message.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/density.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/label.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/fedora.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/appearance.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/demo.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/security.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/renaming.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/box.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/annotation.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/toggle.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/openvr.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/measurement.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/command.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/dragging.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
copying modules/pymol/wizard/filter.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/repository.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
copying modules/pymol/plugins/installation.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry
creating /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pymol/Qt/utils.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pymol/Qt/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt
copying modules/pmg_qt/forms/save_molecule.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-i386-3.9
creating build/temp.linux-i386-3.9/build
creating build/temp.linux-i386-3.9/build/generated
creating build/temp.linux-i386-3.9/contrib
creating build/temp.linux-i386-3.9/contrib/uiuc
creating build/temp.linux-i386-3.9/contrib/uiuc/plugins
creating build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-i386-3.9/layer0
creating build/temp.linux-i386-3.9/layer1
creating build/temp.linux-i386-3.9/layer2
creating build/temp.linux-i386-3.9/layer3
creating build/temp.linux-i386-3.9/layer4
creating build/temp.linux-i386-3.9/layer5
creating build/temp.linux-i386-3.9/modules
creating build/temp.linux-i386-3.9/modules/cealign
creating build/temp.linux-i386-3.9/modules/cealign/src
creating build/temp.linux-i386-3.9/ov
creating build/temp.linux-i386-3.9/ov/src
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-i386-3.9/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'write_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure':
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28,
from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
413 | return ok;
| ^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: 'print_input_data' defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:34:
In function 'strncpy',
inlined from 'read_dlpoly_config_structure' at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:23,
from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
In function 'strncpy',
inlined from 'get_pdb_cryst1' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from 'read_next_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:34:
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_molden_structure' at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function 'strncpy',
inlined from 'read_dlpoly_structure' at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_header' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5,
inlined from 'open_pdb_read' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_header' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5,
inlined from 'open_pdb_read' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_readline':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5,
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5,
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pdb_fields' at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5,
inlined from 'read_pdb_structure' at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable]
459 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable]
1407 | int i,j,k;
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable]
1541 | int i,j,k;
| ^
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:155:
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'read_gamess_rundata' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_structure':
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_timestep':
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: 'goto_keyline' defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: 'eatwhitelines' defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: 'eatline' defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: 'angular_momentum_expon' defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: 'add_wavefunction' defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: 'init_qmdata' defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
In function 'strncpy',
inlined from 'get_coordinates' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'char* recreate_command_line(int, char**)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: at offset 0 to an object with size 0 allocated by 'malloc' here
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable]
1409 | FILE* fd;
| ^~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
| ~~^ ~~~~
| | |
| long int fio_size_t {aka long long int}
| %lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
| ~~^
| |
| long int
| %lld
561 | rc, size, szleft, writecalls);
| ~~~~~~
| |
| fio_size_t {aka long long int}
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function 'strncat',
inlined from 'get_basis_options' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5:
/usr/include/i386-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'get_basis_options' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5:
/usr/include/i386-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdheader':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: 'fio_write_str' defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: 'fio_read_int32' defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:41:
In function 'strncpy',
inlined from 'read_tinker_structure' at contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function 'strncpy',
inlined from 'get_fmoxyz' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5,
inlined from 'get_input_structure' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Crystal.cpp -o build/temp.linux-i386-3.9/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function 'strncpy',
inlined from 'get_proc_mem.isra' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_proc_mem.isra' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Feedback.cpp -o build/temp.linux-i386-3.9/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_contrl' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:29:
In function 'sprintf',
inlined from 'vtf_error' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12:
/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: warning: '%s' directive argument is null [-Wformat-overflow=]
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:32:
In function 'strncat',
inlined from 'vtf_parse_atom' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9,
inlined from 'vtf_parse_structure' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from '_vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from 'vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/i386-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncat',
inlined from 'vtf_parse_atom' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7,
inlined from 'vtf_parse_structure' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
inlined from '_vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
inlined from 'vtf_open_file_read' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
/usr/include/i386-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read':
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function 'strncpy',
inlined from 'get_contrl_firefly' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-i386-3.9/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Map.cpp -o build/temp.linux-i386-3.9/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-i386-3.9/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-i386-3.9/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-i386-3.9/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius':
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:53:
In function 'strncpy',
inlined from 'read_xyz_structure' at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Texture.cpp -o build/temp.linux-i386-3.9/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from /usr/include/string.h:495,
from contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:34:
In function 'strncpy',
inlined from 'get_pqr_cryst1' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3,
inlined from 'read_pqr_timestep' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function 'strncpy',
inlined from 'get_pqr_fields' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3,
inlined from 'read_pqr_structure' at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util.cpp -o build/temp.linux-i386-3.9/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Block.cpp -o build/temp.linux-i386-3.9/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Word.cpp -o build/temp.linux-i386-3.9/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ButMode.cpp -o build/temp.linux-i386-3.9/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-i386-3.9/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Character.cpp -o build/temp.linux-i386-3.9/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function 'strncpy',
inlined from 'symmetry_expand' at contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5,
inlined from 'get_traj_frame.constprop' at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7:
/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Field.cpp -o build/temp.linux-i386-3.9/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-i386-3.9/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Extrude.cpp -o build/temp.linux-i386-3.9/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH'
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH'
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH'
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH'
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH'
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH'
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH'
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH'
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH'
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Deferred.cpp -o build/temp.linux-i386-3.9/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH'
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH'
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH'
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH'
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH'
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH'
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH'
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH'
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH'
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH'
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH'
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH'
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH'
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-i386-3.9/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1902:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
1902 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util2.cpp -o build/temp.linux-i386-3.9/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Err.cpp -o build/temp.linux-i386-3.9/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Match.cpp -o build/temp.linux-i386-3.9/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Parse.cpp -o build/temp.linux-i386-3.9/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-i386-3.9/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-i386-3.9/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-i386-3.9/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/os_gl.cpp -o build/temp.linux-i386-3.9/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Movie.cpp -o build/temp.linux-i386-3.9/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-i386-3.9/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PConv.cpp -o build/temp.linux-i386-3.9/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Basis.cpp -o build/temp.linux-i386-3.9/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-i386-3.9/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-i386-3.9/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-i386-3.9/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Color.cpp -o build/temp.linux-i386-3.9/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Vector.cpp -o build/temp.linux-i386-3.9/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-i386-3.9/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontType.cpp -o build/temp.linux-i386-3.9/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Scene.cpp -o build/temp.linux-i386-3.9/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tracker.cpp -o build/temp.linux-i386-3.9/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:16: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:23: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Matrix.cpp -o build/temp.linux-i386-3.9/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Sphere.cpp -o build/temp.linux-i386-3.9/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const string&, size_t, size_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:28: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:28: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/File.cpp -o build/temp.linux-i386-3.9/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/CGO.cpp -o build/temp.linux-i386-3.9/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Triangle.cpp -o build/temp.linux-i386-3.9/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-i386-3.9/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-i386-3.9/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Picking.cpp -o build/temp.linux-i386-3.9/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Font.cpp -o build/temp.linux-i386-3.9/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Setting.cpp -o build/temp.linux-i386-3.9/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Pop.cpp -o build/temp.linux-i386-3.9/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-i386-3.9/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Text.cpp -o build/temp.linux-i386-3.9/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Wizard.cpp -o build/temp.linux-i386-3.9/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ray.cpp -o build/temp.linux-i386-3.9/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-i386-3.9/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-i386-3.9/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ortho.cpp -o build/temp.linux-i386-3.9/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-i386-3.9/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-i386-3.9/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Control.cpp -o build/temp.linux-i386-3.9/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i386-3.9/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-i386-3.9/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-i386-3.9/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-i386-3.9/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-i386-3.9/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Seq.cpp -o build/temp.linux-i386-3.9/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-i386-3.9/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-i386-3.9/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-i386-3.9/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)':
layer1/Ray.cpp:1538:20: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1538 | "%s"
| ^~
......
1543 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1533:18: note: 'sprintf' output between 116 and 3302 bytes into a destination of size 1024
1533 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1534 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1535 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1536 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1537 | " children [\n"
| ~~~~~~~~~~~~~~~
1538 | "%s"
| ~~~~
1539 | " ]\n"
| ~~~~~~
1540 | "}\n",
| ~~~~~~
1541 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1542 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1543 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-i386-3.9/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)':
layer1/Scene.cpp:4227:36: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4227 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4227:15: note: in expansion of macro 'PRINTF'
4227 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4097:34: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4097 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4097:13: note: in expansion of macro 'PRINTF'
4097 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4113:36: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4113 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4113:15: note: in expansion of macro 'PRINTF'
4113 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4121:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=]
4121 | sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2);
| ^~ ~~~~
layer1/Scene.cpp:4121:22: note: 'sprintf' output between 16 and 2062 bytes into a destination of size 1024
4121 | sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:3984:38: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
3984 | PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: 'snprintf' output between 24 and 1047 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:3984:17: note: in expansion of macro 'PRINTF'
3984 | PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G);
| ^~~~~~
layer1/Scene.cpp:3990:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=]
3990 | sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer);
| ^~ ~~~~~~
layer1/Scene.cpp:3990:24: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024
3990 | sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4018:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
4018 | PRINTF " You unpicked %s.", buffer ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4018:17: note: in expansion of macro 'PRINTF'
4018 | PRINTF " You unpicked %s.", buffer ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4031:64: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4031 | PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer,
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 21 and 1299 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4031:17: note: in expansion of macro 'PRINTFB'
4031 | PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer,
| ^~~~~~~
layer1/Scene.cpp:4285:34: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4285 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4285:13: note: in expansion of macro 'PRINTF'
4285 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4319:53: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
4319 | sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1);
| ^~ ~~~~
layer1/Scene.cpp:4319:22: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024
4319 | sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4310:50: warning: '%s' directive writing up to 1023 bytes into a region of size 1007 [-Wformat-overflow=]
4310 | sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1);
| ^~ ~~~~
layer1/Scene.cpp:4310:22: note: 'sprintf' output between 21 and 1044 bytes into a destination of size 1024
4310 | sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4369:45: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=]
4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1);
| ^~ ~~~~
layer1/Scene.cpp:4369:31: note: directive argument in the range [-2147483647, 2147483647]
4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4369:22: note: 'sprintf' output between 23 and 1056 bytes into a destination of size 1024
4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4341:47: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=]
4341 | sprintf(buffer, "cmd.origin(\"%s\")", buf1);
| ^~ ~~~~
layer1/Scene.cpp:4341:24: note: 'sprintf' output between 15 and 1038 bytes into a destination of size 1024
4341 | sprintf(buffer, "cmd.origin(\"%s\")", buf1);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4347:38: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
4347 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~ ~~~~~~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer1/Scene.cpp:33:
layer0/Feedback.h:282:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer1/Scene.cpp:4347:17: note: in expansion of macro 'PRINTF'
4347 | PRINTF " You clicked %s", buffer ENDF(G);
| ^~~~~~
layer1/Scene.cpp:4434:35: warning: ')' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=]
4434 | sprintf(buf2, "%s(%s)", sel_mode_kw, buffer);
| ^
layer1/Scene.cpp:4434:22: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024
4434 | sprintf(buf2, "%s(%s)", sel_mode_kw, buffer);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4441:57: warning: '%s' directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=]
4441 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw,
| ^~
4442 | buf1);
| ~~~~
layer1/Scene.cpp:4441:26: note: 'sprintf' output 20 or more bytes (assuming 1043) into a destination of size 1024
4441 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4442 | buf1);
| ~~~~~
layer1/Scene.cpp:4416:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=]
4416 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
| ^~
4417 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
| ~~~~~~
layer1/Scene.cpp:4416:22: note: 'sprintf' output 35 or more bytes (assuming 2081) into a destination of size 1024
4416 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4417 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4418 | selName);
| ~~~~~~~~
layer1/Scene.cpp:4425:47: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=]
4425 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
| ^~
4426 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
| ~~~~~~
layer1/Scene.cpp:4425:26: note: 'sprintf' output 35 or more bytes (assuming 2081) into a destination of size 1024
4425 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4426 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4427 | selName);
| ~~~~~~~~
layer1/Scene.cpp:4428:57: warning: '%s' directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=]
4428 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
| ^~
4429 | sel_mode_kw, buf2);
| ~~~~
layer1/Scene.cpp:4428:26: note: 'sprintf' output 29 or more bytes (assuming 1052) into a destination of size 1024
4428 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4429 | sel_mode_kw, buf2);
| ~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4393:32: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=]
4393 | sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer);
| ^~ ~~~~~~
layer1/Scene.cpp:4393:20: note: 'sprintf' output between 5 and 1028 bytes into a destination of size 1024
4393 | sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4404:55: warning: '%s' directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=]
4404 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
| ^~
4405 | sel_mode_kw, buf1);
| ~~~~
layer1/Scene.cpp:4404:24: note: 'sprintf' output 29 or more bytes (assuming 1052) into a destination of size 1024
4404 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4405 | sel_mode_kw, buf1);
| ~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-i386-3.9/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-i386-3.9/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-i386-3.9/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-i386-3.9/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-i386-3.9/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-i386-3.9/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-i386-3.9/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-i386-3.9/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In function 'int add_normal_char(COrtho*, unsigned char)',
inlined from 'void OrthoKey(PyMOLGlobals*, unsigned char, int, int, int)' at layer1/Ortho.cpp:893:34:
layer1/Ortho.cpp:850:34: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
850 | I->Line[curLine][I->CurChar] = 0;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
layer1/Ortho.cpp: In function 'void OrthoKey(PyMOLGlobals*, unsigned char, int, int, int)':
layer1/Ortho.cpp:80:17: note: at offset 0 to object 'COrtho::Line' with size 262144 declared here
80 | OrthoLineType Line[OrthoSaveLines + 1]{};
| ^~~~
In function 'int add_normal_char(COrtho*, unsigned char)',
inlined from 'void OrthoKey(PyMOLGlobals*, unsigned char, int, int, int)' at layer1/Ortho.cpp:873:30:
layer1/Ortho.cpp:850:34: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
850 | I->Line[curLine][I->CurChar] = 0;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
layer1/Ortho.cpp: In function 'void OrthoKey(PyMOLGlobals*, unsigned char, int, int, int)':
layer1/Ortho.cpp:80:17: note: at offset 0 to object 'COrtho::Line' with size 262144 declared here
80 | OrthoLineType Line[OrthoSaveLines + 1]{};
| ^~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-i386-3.9/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-i386-3.9/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifFile.cpp -o build/temp.linux-i386-3.9/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/P.cpp -o build/temp.linux-i386-3.9/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-i386-3.9/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)':
layer2/ObjectSurface.cpp:264:30: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
264 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:263:7: note: in expansion of macro 'PRINTFB'
263 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions)
| ^~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i386-3.9/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-i386-3.9/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()':
layer2/ObjectSurface.cpp:493:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:492:13: note: in expansion of macro 'PRINTFB'
492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details)
| ^~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-i386-3.9/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-i386-3.9/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)':
layer2/ObjectMolecule.cpp:7785:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7785 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:35:
layer0/Feedback.h:274:15: note: 'snprintf' output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7784:3: note: in expansion of macro 'PRINTFB'
7784 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
layer1/P.cpp: In function 'void PSetupEmbedded(PyMOLGlobals*, int, char**)':
layer1/P.cpp:1961:22: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations]
1961 | PyEval_InitThreads();
| ^
In file included from /usr/include/python3.9/Python.h:145,
from layer0/os_python.h:32,
from layer1/P.cpp:26:
/usr/include/python3.9/ceval.h:130:37: note: declared here
130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void);
| ^~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-i386-3.9/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-i386-3.9/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-i386-3.9/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-i386-3.9/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-i386-3.9/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)':
layer2/ObjectMap.cpp:5982:24: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 30 or more bytes (assuming 285) into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Rep.cpp -o build/temp.linux-i386-3.9/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-i386-3.9/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-i386-3.9/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-i386-3.9/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-i386-3.9/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Executive.cpp -o build/temp.linux-i386-3.9/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDot.cpp -o build/temp.linux-i386-3.9/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-i386-3.9/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)':
layer2/ObjectVolume.cpp:74:33: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectVolume.cpp:20:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-i386-3.9/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-i386-3.9/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-i386-3.9/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/VFont.cpp -o build/temp.linux-i386-3.9/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-i386-3.9/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-i386-3.9/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveLoad(PyMOLGlobals*, const ExecutiveLoadArgs&)':
layer3/Executive.cpp:3914:15: warning: unused variable 'object_props' [-Wunused-variable]
3914 | const char* object_props = args.object_props.c_str();
| ^~~~~~~~~~~~
layer3/Executive.cpp:3915:15: warning: unused variable 'atom_props' [-Wunused-variable]
3915 | const char* atom_props = args.atom_props.c_str();
| ^~~~~~~~~~
layer3/Executive.cpp:3924:8: warning: unused variable 'mimic' [-Wunused-variable]
3924 | auto mimic = args.mimic;
| ^~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Editor.cpp -o build/temp.linux-i386-3.9/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-i386-3.9/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)':
layer2/ObjectMap.cpp:2977:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2977 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2986:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2986 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2992:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2992 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:3074:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3074 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Seeker.cpp -o build/temp.linux-i386-3.9/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-i386-3.9/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-i386-3.9/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()':
layer2/ObjectMolecule.cpp:10827:82: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10827 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:35:
layer0/Feedback.h:274:15: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:10826:13: note: in expansion of macro 'PRINTFB'
10826 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)':
layer2/ObjectMolecule.cpp:10955:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10956 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10955:21: note: directive argument in the range [-2147483647, 2147483647]
10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10955:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024
10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10956 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/PopUp.cpp -o build/temp.linux-i386-3.9/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-i386-3.9/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-i386-3.9/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/main.cpp -o build/temp.linux-i386-3.9/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
layer2/ObjectMap.cpp:4297:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4297 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:4297:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4297 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMap.cpp:21:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-i386-3.9/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-i386-3.9/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Cmd.cpp -o build/temp.linux-i386-3.9/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-i386-3.9/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-i386-3.9/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)':
layer3/Seeker.cpp:148:50: warning: '%s' directive writing up to 1023 bytes into a region of size between 754 and 1009 [-Wformat-overflow=]
148 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
149 | buf1);
| ~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer3/Seeker.cpp:20:
/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 28 or more bytes (assuming 1306) into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)':
layer3/Seeker.cpp:232:50: warning: '%s' directive writing up to 1023 bytes into a region of size between 754 and 1009 [-Wformat-overflow=]
232 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
233 | buf1);
| ~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer3/Seeker.cpp:20:
/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 28 or more bytes (assuming 1306) into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)':
layer3/Editor.cpp:1944:29: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1944 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer1/ButMode.h:20,
from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: 'snprintf' output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Editor.cpp:1943:7: note: in expansion of macro 'PRINTFB'
1943 | PRINTFB(G, FB_Editor, FB_Blather)
| ^~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-i386-3.9/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)':
layer3/Editor.cpp:335:29: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
335 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:335:12: note: 'sprintf' output between 9 and 264 bytes into a destination of size 256
335 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
337 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: 'sprintf' output between 11 and 266 bytes into a destination of size 256
337 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
339 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: 'sprintf' output between 12 and 267 bytes into a destination of size 256
339 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-i386-3.9/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-i386-3.9/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-i386-3.9/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-i386-3.9/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i386-3.9/modules/cealign/src/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)':
layer2/CoordSet.cpp:1240:72: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=]
1240 | PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n",
| ^~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Selector.cpp -o build/temp.linux-i386-3.9/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-i386-3.9/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-i386-3.9/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/DistSet.cpp -o build/temp.linux-i386-3.9/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/View.cpp -o build/temp.linux-i386-3.9/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer5/PyMOL.cpp: In function 'void init_python(int, char**)':
layer5/PyMOL.cpp:1798:22: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations]
1798 | PyEval_InitThreads();
| ^
In file included from /usr/include/python3.9/Python.h:145,
from layer0/os_python.h:32,
from layer5/PyMOL.cpp:17:
/usr/include/python3.9/ceval.h:130:37: note: declared here
130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void);
| ^~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)':
layer3/Executive.cpp:9162:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9162 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9161:15: note: in expansion of macro 'PRINTFB'
9161 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11590:28: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11590 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11591 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11590:17: note: directive argument in the range [1, 2147483647]
11590 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11589:15: note: in expansion of macro 'PRINTF'
11589 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)':
layer3/Executive.cpp:11672:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11672 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11673 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11672:8: note: directive argument in the range [1, 2147483647]
11672 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11671:6: note: in expansion of macro 'PRINTF'
11671 | PRINTF
| ^~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-i386-3.9/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11775:62: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11775 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11774:17: note: in expansion of macro 'PRINTF'
11774 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11851:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11851 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11852 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11851:15: note: directive argument in the range [1, 2147483647]
11851 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11850:13: note: in expansion of macro 'PRINTF'
11850 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)':
layer3/Executive.cpp:12034:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
12034 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12033:25: note: in expansion of macro 'PRINTF'
12033 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12034:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
12034 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12033:25: note: in expansion of macro 'PRINTF'
12033 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11945:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11945 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11946 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11945:21: note: directive argument in the range [1, 2147483647]
11945 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11945:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11944:19: note: in expansion of macro 'PRINTF'
11944 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11942:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11942 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11942:21: note: directive argument in the range [1, 2147483647]
11942 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11941:19: note: in expansion of macro 'PRINTF'
11941 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12066:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
12066 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12067 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:12066:25: note: directive argument in the range [1, 2147483647]
12066 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12065:23: note: in expansion of macro 'PRINTF'
12065 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12059:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
12059 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12060 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12058:23: note: in expansion of macro 'PRINTF'
12058 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11901:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11901 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11901:11: note: in expansion of macro 'PRINTF'
11901 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-i386-3.9/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12283:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12283 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12284 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12282:23: note: in expansion of macro 'PRINTF'
12282 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12251:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12251 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12252 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12251:21: note: directive argument in the range [1, 2147483647]
12251 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12251:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12250:19: note: in expansion of macro 'PRINTF'
12250 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12248:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12248 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12248:21: note: directive argument in the range [1, 2147483647]
12248 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12247:19: note: in expansion of macro 'PRINTF'
12247 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12315:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12315 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12316 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12315:25: note: directive argument in the range [1, 2147483647]
12315 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12314:23: note: in expansion of macro 'PRINTF'
12314 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12307:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12307 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12308 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12306:23: note: in expansion of macro 'PRINTF'
12306 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12211:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12211 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12211:11: note: in expansion of macro 'PRINTF'
12211 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)':
layer3/Executive.cpp:12380:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12380 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12381 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12380:19: note: directive argument in the range [1, 2147483647]
12380 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12379:17: note: in expansion of macro 'PRINTF'
12379 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12372:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12372 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12373 | name, value2, obj->Name ENDF(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12371:17: note: in expansion of macro 'PRINTF'
12371 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12351:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12351 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12351:11: note: in expansion of macro 'PRINTF'
12351 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function 'int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)':
layer3/Executive.cpp:12490:68: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12490 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12489:21: note: in expansion of macro 'PRINTF'
12489 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12515:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12515 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12515:25: note: directive argument in the range [1, 2147483647]
12515 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12514:23: note: in expansion of macro 'PRINTF'
12514 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12509:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12509 | " Setting: %s unset in object \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:282:53: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12508:23: note: in expansion of macro 'PRINTF'
12508 | PRINTF
| ^~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-i386-3.9/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)':
layer2/ObjectMesh.cpp:329:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:328:7: note: in expansion of macro 'PRINTFB'
328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions)
| ^~~~~~~
layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()':
layer2/ObjectMesh.cpp:507:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
507 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:506:9: note: in expansion of macro 'PRINTFB'
506 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors)
| ^~~~~~~
layer2/ObjectMesh.cpp:540:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
540 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:539:13: note: in expansion of macro 'PRINTFB'
539 | PRINTFB(G, FB_ObjectMesh, FB_Details)
| ^~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-i386-3.9/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-i386-3.9/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)':
layer3/Executive.cpp:6023:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
6023 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:6022:7: note: in expansion of macro 'PRINTFB'
6022 | PRINTFB(G, FB_Executive, FB_Details)
| ^~~~~~~
layer3/Executive.cpp:6014:46: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
6014 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 76 and 331 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:6013:7: note: in expansion of macro 'PRINTFB'
6013 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-i386-3.9/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:9495:53: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9495 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9494:17: note: in expansion of macro 'PRINTFB'
9494 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9508:67: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9508 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9507:17: note: in expansion of macro 'PRINTFB'
9507 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9520:59: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9520 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9519:17: note: in expansion of macro 'PRINTFB'
9519 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)':
layer2/ObjectMolecule2.cpp:313:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
313 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer2/ObjectMolecule2.cpp:20:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 26 and 291 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-i386-3.9/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-i386-3.9/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)':
layer3/Executive.cpp:14515:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14515 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14514:7: note: in expansion of macro 'PRINTFB'
14514 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14510:36: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14510 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14509:7: note: in expansion of macro 'PRINTFB'
14509 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)':
layer3/Executive.cpp:2366:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2366 | " Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:2365:17: note: in expansion of macro 'PRINTFB'
2365 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)':
layer3/Executive.cpp:5145:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5145 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5144:11: note: in expansion of macro 'PRINTFB'
5144 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
layer3/Executive.cpp:5170:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5170 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5169:9: note: in expansion of macro 'PRINTFB'
5169 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
layer3/Executive.cpp: In function 'void ExecutiveSelectRect(PyMOLGlobals*, BlockRect*, int)':
layer3/Executive.cpp:7355:50: warning: '%s' directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=]
7355 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
7356 | buffer);
| ~~~~~~
layer3/Executive.cpp:7355:20: note: 'sprintf' output 28 or more bytes (assuming 1051) into a destination of size 1024
7355 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7356 | buffer);
| ~~~~~~~
layer3/Executive.cpp:7341:50: warning: '%s' directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=]
7341 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
7342 | buffer);
| ~~~~~~
layer3/Executive.cpp:7341:20: note: 'sprintf' output 28 or more bytes (assuming 1051) into a destination of size 1024
7341 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7342 | buffer);
| ~~~~~~~
layer3/Executive.cpp:7331:50: warning: '%s' directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=]
7331 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
7332 | buffer);
| ~~~~~~
layer3/Executive.cpp:7331:20: note: 'sprintf' output 28 or more bytes (assuming 1051) into a destination of size 1024
7331 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7332 | buffer);
| ~~~~~~~
layer3/Executive.cpp:7323:50: warning: '%s' directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=]
7323 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ^~
7324 | buffer);
| ~~~~~~
layer3/Executive.cpp:7323:20: note: 'sprintf' output 28 or more bytes (assuming 1051) into a destination of size 1024
7323 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7324 | buffer);
| ~~~~~~~
layer3/Executive.cpp:7314:51: warning: '%s' directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=]
7314 | sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName,
| ^~
7315 | buffer);
| ~~~~~~
layer3/Executive.cpp:7314:20: note: 'sprintf' output 30 or more bytes (assuming 1053) into a destination of size 1024
7314 | sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName,
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
7315 | buffer);
| ~~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Menu.cpp -o build/temp.linux-i386-3.9/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-i386-3.9/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)':
layer3/Selector.cpp:1830:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1830 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/10/cstdio:42,
from /usr/include/c++/10/ext/string_conversions.h:43,
from /usr/include/c++/10/bits/basic_string.h:6545,
from /usr/include/c++/10/string:55,
from layer3/Selector.cpp:20:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 59 and 324 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()':
layer2/ObjectSlice.cpp:639:42: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: 'snprintf' output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:638:9: note: in expansion of macro 'PRINTFB'
638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors)
| ^~~~~~~
layer2/ObjectSlice.cpp:650:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:649:11: note: in expansion of macro 'PRINTFB'
649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather)
| ^~~~~~~
layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)':
layer3/Executive.cpp:14181:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=]
14181 | "new_name before: %s\n", new_name ENDFB(G);
| ^~ ~~~~~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 19 and 1042 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14180:19: note: in expansion of macro 'PRINTFB'
14180 | PRINTFB(G, FB_Executive, FB_Blather)
| ^~~~~~~
layer3/Executive.cpp:14184:41: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 236 [-Wformat-truncation=]
14184 | "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n",
| ^~
14185 | new_name, name, (int)a, x, y, z ENDFB(G);
| ~~~~~~~~
layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1]
14184 | "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1]
layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1]
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output 52 or more bytes (assuming 1078) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14183:19: note: in expansion of macro 'PRINTFB'
14183 | PRINTFB(G, FB_Executive, FB_Blather)
| ^~~~~~~
layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*, int)':
layer3/PlugIOManager.cpp:939:65: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
939 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:867,
from /usr/include/malloc.h:24,
from layer0/os_predef.h:86,
from layer0/os_python.h:21,
from layer3/PlugIOManager.cpp:20:
/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)':
layer3/Executive.cpp:15534:55: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15534 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15535 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15534:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024
15534 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15535 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetName(PyMOLGlobals*, const char*, const char*)':
layer3/Executive.cpp:3623:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3623 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3624 | name ENDFB(G);
| ~~~~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:3622:5: note: in expansion of macro 'PRINTFB'
3622 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)':
layer3/Executive.cpp:9799:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9799 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
In file included from layer1/Ortho.h:32,
from layer3/Executive.h:30,
from layer3/Executive.cpp:31:
layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9798:3: note: in expansion of macro 'PRINTFB'
9798 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-i386-3.9/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-i386-3.9/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Shaker.cpp -o build/temp.linux-i386-3.9/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-i386-3.9/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/build/generated/ShaderText.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i386-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i386-3.9/layer0/Block.o build/temp.linux-i386-3.9/layer0/Crystal.o build/temp.linux-i386-3.9/layer0/Deferred.o build/temp.linux-i386-3.9/layer0/Err.o build/temp.linux-i386-3.9/layer0/Feedback.o build/temp.linux-i386-3.9/layer0/Field.o build/temp.linux-i386-3.9/layer0/File.o build/temp.linux-i386-3.9/layer0/GenericBuffer.o build/temp.linux-i386-3.9/layer0/GraphicsUtil.o build/temp.linux-i386-3.9/layer0/Isosurf.o build/temp.linux-i386-3.9/layer0/Map.o build/temp.linux-i386-3.9/layer0/Match.o build/temp.linux-i386-3.9/layer0/Matrix.o build/temp.linux-i386-3.9/layer0/MemoryDebug.o build/temp.linux-i386-3.9/layer0/MyPNG.o build/temp.linux-i386-3.9/layer0/Parse.o build/temp.linux-i386-3.9/layer0/Pixmap.o build/temp.linux-i386-3.9/layer0/PostProcess.o build/temp.linux-i386-3.9/layer0/ShaderMgr.o build/temp.linux-i386-3.9/layer0/ShaderPrg.o build/temp.linux-i386-3.9/layer0/Sphere.o build/temp.linux-i386-3.9/layer0/Tetsurf.o build/temp.linux-i386-3.9/layer0/Texture.o build/temp.linux-i386-3.9/layer0/Tracker.o build/temp.linux-i386-3.9/layer0/Triangle.o build/temp.linux-i386-3.9/layer0/Util.o build/temp.linux-i386-3.9/layer0/Util2.o build/temp.linux-i386-3.9/layer0/Vector.o build/temp.linux-i386-3.9/layer0/Word.o build/temp.linux-i386-3.9/layer0/os_gl.o build/temp.linux-i386-3.9/layer1/Basis.o build/temp.linux-i386-3.9/layer1/ButMode.o build/temp.linux-i386-3.9/layer1/CGO.o build/temp.linux-i386-3.9/layer1/COLLADA.o build/temp.linux-i386-3.9/layer1/Character.o build/temp.linux-i386-3.9/layer1/Color.o build/temp.linux-i386-3.9/layer1/Control.o build/temp.linux-i386-3.9/layer1/Extrude.o build/temp.linux-i386-3.9/layer1/Font.o build/temp.linux-i386-3.9/layer1/FontGLUT.o build/temp.linux-i386-3.9/layer1/FontGLUT8x13.o build/temp.linux-i386-3.9/layer1/FontGLUT9x15.o build/temp.linux-i386-3.9/layer1/FontGLUTHel10.o build/temp.linux-i386-3.9/layer1/FontGLUTHel12.o build/temp.linux-i386-3.9/layer1/FontGLUTHel18.o build/temp.linux-i386-3.9/layer1/FontType.o build/temp.linux-i386-3.9/layer1/Movie.o build/temp.linux-i386-3.9/layer1/Ortho.o build/temp.linux-i386-3.9/layer1/P.o build/temp.linux-i386-3.9/layer1/PConv.o build/temp.linux-i386-3.9/layer1/Picking.o build/temp.linux-i386-3.9/layer1/Pop.o build/temp.linux-i386-3.9/layer1/PyMOLObject.o build/temp.linux-i386-3.9/layer1/Ray.o build/temp.linux-i386-3.9/layer1/Rep.o build/temp.linux-i386-3.9/layer1/Scene.o build/temp.linux-i386-3.9/layer1/ScenePicking.o build/temp.linux-i386-3.9/layer1/SceneRay.o build/temp.linux-i386-3.9/layer1/SceneRender.o build/temp.linux-i386-3.9/layer1/ScrollBar.o build/temp.linux-i386-3.9/layer1/Seq.o build/temp.linux-i386-3.9/layer1/Setting.o build/temp.linux-i386-3.9/layer1/Shaker.o build/temp.linux-i386-3.9/layer1/Symmetry.o build/temp.linux-i386-3.9/layer1/Text.o build/temp.linux-i386-3.9/layer1/TypeFace.o build/temp.linux-i386-3.9/layer1/View.o build/temp.linux-i386-3.9/layer1/Wizard.o build/temp.linux-i386-3.9/layer2/AssemblyHelpers.o build/temp.linux-i386-3.9/layer2/AtomInfo.o build/temp.linux-i386-3.9/layer2/AtomInfoHistory.o build/temp.linux-i386-3.9/layer2/BondTypeHistory.o build/temp.linux-i386-3.9/layer2/CifFile.o build/temp.linux-i386-3.9/layer2/CifMoleculeReader.o build/temp.linux-i386-3.9/layer2/CoordSet.o build/temp.linux-i386-3.9/layer2/DistSet.o build/temp.linux-i386-3.9/layer2/GadgetSet.o build/temp.linux-i386-3.9/layer2/HydrogenAdder.o build/temp.linux-i386-3.9/layer2/MmodTyping.o build/temp.linux-i386-3.9/layer2/MmtfMoleculeReader.o build/temp.linux-i386-3.9/layer2/Mol2Typing.o build/temp.linux-i386-3.9/layer2/MolV3000.o build/temp.linux-i386-3.9/layer2/ObjectAlignment.o build/temp.linux-i386-3.9/layer2/ObjectCGO.o build/temp.linux-i386-3.9/layer2/ObjectCallback.o build/temp.linux-i386-3.9/layer2/ObjectDist.o build/temp.linux-i386-3.9/layer2/ObjectGadget.o build/temp.linux-i386-3.9/layer2/ObjectGadgetRamp.o build/temp.linux-i386-3.9/layer2/ObjectGroup.o build/temp.linux-i386-3.9/layer2/ObjectMap.o build/temp.linux-i386-3.9/layer2/ObjectMesh.o build/temp.linux-i386-3.9/layer2/ObjectMolecule.o build/temp.linux-i386-3.9/layer2/ObjectMolecule2.o build/temp.linux-i386-3.9/layer2/ObjectSlice.o build/temp.linux-i386-3.9/layer2/ObjectSurface.o build/temp.linux-i386-3.9/layer2/ObjectVolume.o build/temp.linux-i386-3.9/layer2/RepAngle.o build/temp.linux-i386-3.9/layer2/RepCartoon.o build/temp.linux-i386-3.9/layer2/RepCylBond.o build/temp.linux-i386-3.9/layer2/RepDihedral.o build/temp.linux-i386-3.9/layer2/RepDistDash.o build/temp.linux-i386-3.9/layer2/RepDistLabel.o build/temp.linux-i386-3.9/layer2/RepDot.o build/temp.linux-i386-3.9/layer2/RepEllipsoid.o build/temp.linux-i386-3.9/layer2/RepLabel.o build/temp.linux-i386-3.9/layer2/RepMesh.o build/temp.linux-i386-3.9/layer2/RepNonbonded.o build/temp.linux-i386-3.9/layer2/RepNonbondedSphere.o build/temp.linux-i386-3.9/layer2/RepRibbon.o build/temp.linux-i386-3.9/layer2/RepSphere.o build/temp.linux-i386-3.9/layer2/RepSphereGenerate.o build/temp.linux-i386-3.9/layer2/RepSphereImmediate.o build/temp.linux-i386-3.9/layer2/RepSurface.o build/temp.linux-i386-3.9/layer2/RepWireBond.o build/temp.linux-i386-3.9/layer2/Sculpt.o build/temp.linux-i386-3.9/layer2/SculptCache.o build/temp.linux-i386-3.9/layer2/SideChainHelper.o build/temp.linux-i386-3.9/layer2/VFont.o build/temp.linux-i386-3.9/layer3/AtomIterators.o build/temp.linux-i386-3.9/layer3/CifDataValueFormatter.o build/temp.linux-i386-3.9/layer3/Editor.o build/temp.linux-i386-3.9/layer3/Executive.o build/temp.linux-i386-3.9/layer3/ExecutivePython.o build/temp.linux-i386-3.9/layer3/MaeExportHelpers.o build/temp.linux-i386-3.9/layer3/MoleculeExporter.o build/temp.linux-i386-3.9/layer3/MovieScene.o build/temp.linux-i386-3.9/layer3/PlugIOManager.o build/temp.linux-i386-3.9/layer3/RingFinder.o build/temp.linux-i386-3.9/layer3/Seeker.o build/temp.linux-i386-3.9/layer3/Selector.o build/temp.linux-i386-3.9/layer3/SelectorTmp.o build/temp.linux-i386-3.9/layer4/Cmd.o build/temp.linux-i386-3.9/layer4/Menu.o build/temp.linux-i386-3.9/layer4/PopUp.o build/temp.linux-i386-3.9/layer5/PyMOL.o build/temp.linux-i386-3.9/layer5/TestPyMOL.o build/temp.linux-i386-3.9/layer5/main.o build/temp.linux-i386-3.9/modules/cealign/src/ccealignmodule.o build/temp.linux-i386-3.9/ov/src/OVContext.o build/temp.linux-i386-3.9/ov/src/OVHeap.o build/temp.linux-i386-3.9/ov/src/OVHeapArray.o build/temp.linux-i386-3.9/ov/src/OVLexicon.o build/temp.linux-i386-3.9/ov/src/OVOneToAny.o build/temp.linux-i386-3.9/ov/src/OVOneToOne.o build/temp.linux-i386-3.9/ov/src/OVRandom.o build/temp.linux-i386-3.9/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-i386-linux-gnu.so
building 'chempy.champ._champ' extension
creating build/temp.linux-i386-3.9/contrib/champ
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ.c -o build/temp.linux-i386-3.9/contrib/champ/champ.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-i386-3.9/contrib/champ/champ_module.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/err2.c -o build/temp.linux-i386-3.9/contrib/champ/err2.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/chiral.c -o build/temp.linux-i386-3.9/contrib/champ/chiral.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/list.c -o build/temp.linux-i386-3.9/contrib/champ/list.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/sort.c -o build/temp.linux-i386-3.9/contrib/champ/sort.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/vla.c -o build/temp.linux-i386-3.9/contrib/champ/vla.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-i386-3.9/contrib/champ/feedback2.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-i386-3.9/contrib/champ/os_memory.o
i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/strblock.c -o build/temp.linux-i386-3.9/contrib/champ/strblock.o
i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/contrib/champ/champ.o build/temp.linux-i386-3.9/contrib/champ/champ_module.o build/temp.linux-i386-3.9/contrib/champ/chiral.o build/temp.linux-i386-3.9/contrib/champ/err2.o build/temp.linux-i386-3.9/contrib/champ/feedback2.o build/temp.linux-i386-3.9/contrib/champ/list.o build/temp.linux-i386-3.9/contrib/champ/os_memory.o build/temp.linux-i386-3.9/contrib/champ/sort.o build/temp.linux-i386-3.9/contrib/champ/strblock.o build/temp.linux-i386-3.9/contrib/champ/vla.o -o /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-i386-linux-gnu.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/pymol-2.4.0+dfsg'
chmod +x test/pymol-test
PYBUILD_SYSTEM="custom" \
PYBUILD_BEFORE_TEST="cp -r {dir}/test {build_dir}" \
PYBUILD_AFTER_TEST="rm -rf {build_dir}/test" \
PYBUILD_TEST_ARGS="cd {build_dir}/test; PYMOL_PATH={build_dir} python{version} run" \
dh_auto_test
I: pybuild pybuild:284: cp -r /build/reproducible-path/pymol-2.4.0+dfsg/test /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build
I: pybuild base:232: cd /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/test; PYMOL_PATH=/build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build python3.9 run
run_tests: C0001quit...
run_tests: C0001quit.log DIFFERS over about 1 lines.
run_tests: C0010hello...
run_tests: C0010hello.log DIFFERS over about 1 lines.
run_tests: C0020pdb...
run_tests: C0020pdb.log DIFFERS over about 4 lines.
run_tests: C0020pdb.pdb is missing.
run_tests: C0021pdbstr...
run_tests: C0021pdbstr.log DIFFERS over about 3 lines.
run_tests: C0025mol...
run_tests: C0025mol.log DIFFERS over about 3 lines.
run_tests: C0026sdf...
run_tests: C0026sdf.log DIFFERS over about 17 lines.
run_tests: C0027mol2...
run_tests: C0027mol2.log DIFFERS over about 36 lines.
run_tests: C0030pkl...
run_tests: C0030pkl.pdb is missing.
run_tests: C0030pkl.log DIFFERS over about 4 lines.
run_tests: C0050multi...
run_tests: C0050multi.log DIFFERS over about 4 lines.
run_tests: C0060delete...
run_tests: C0060delete.log DIFFERS over about 19 lines.
run_tests: C0070rep...
run_tests: C0070rep.log DIFFERS over about 9 lines.
run_tests: C0080create...
run_tests: C0080create.2.pdb is missing.
run_tests: C0080create.log DIFFERS over about 61 lines.
run_tests: C0080create.1.pdb is missing.
run_tests: C0100select...
run_tests: C0100select.log DIFFERS over about 90 lines.
run_tests: C0105names...
run_tests: C0105names.log DIFFERS over about 27 lines.
run_tests: C0106order...
run_tests: C0106order.log DIFFERS over about 49 lines.
run_tests: C0140iterate...
run_tests: C0140iterate.log DIFFERS over about 23 lines.
run_tests: C0150alter...
run_tests: C0150alter.1.pdb is missing.
run_tests: C0150alter.log DIFFERS over about 11 lines.
run_tests: C0160get...
run_tests: C0160get.log DIFFERS over about 42 lines.
run_tests: C0170scene...
run_tests: C0170scene.log DIFFERS over about 125 lines.
run_tests: C0180embed...
run_tests: C0180embed.log DIFFERS over about 45 lines.
run_tests: C0181embed...
run_tests: C0181embed.log DIFFERS over about 10 lines.
run_tests: C0200feedback...
run_tests: C0200feedback.log DIFFERS over about 127 lines.
run_tests: C0201extend...
run_tests: C0201extend.log DIFFERS over about 11 lines.
run_tests: C0202help_python...
run_tests: C0202help_python.log DIFFERS over about 50 lines.
run_tests: C0300session...
run_tests: C0300session.log DIFFERS over about 14 lines.
run_tests: C0500misc...
run_tests: C0500misc.log DIFFERS over about 130 lines.
run_tests: C0550pseudo...
run_tests: C0550pseudo.log DIFFERS over about 36 lines.
run_tests: C0600util...
run_tests: C0600util.log DIFFERS over about 27 lines.
run_tests: C0700odd...
run_tests: C0700odd.9.pdb is missing.
run_tests: C0700odd.7.pdb is missing.
run_tests: C0700odd.C.pdb is missing.
run_tests: C0700odd.5.pdb is missing.
run_tests: C0700odd.4.pdb is missing.
run_tests: C0700odd.B.pdb is missing.
run_tests: C0700odd.8.pdb is missing.
run_tests: C0700odd.6.pdb is missing.
run_tests: C0700odd.3.pdb is missing.
run_tests: C0700odd.D.pdb is missing.
run_tests: C0700odd.A.pdb is missing.
run_tests: C0700odd.2.pdb is missing.
run_tests: C0700odd.1.pdb is missing.
run_tests: C0700odd.E.pdb is missing.
run_tests: C0700odd.F.pdb is missing.
run_tests: C0700odd.log DIFFERS over about 204 lines.
run_tests: C0740multipdb...
run_tests: C0740multipdb.log DIFFERS over about 45 lines.
run_tests: C0800matrices...
run_tests: C0800matrices.log DIFFERS over about 141 lines.
run_tests: C1000viewing...
run_tests: C1000viewing.log DIFFERS over about 264 lines.
run_tests: C1010helping...
run_tests: C1010helping.log DIFFERS over about 27 lines.
run_tests: C1020querying...
run_tests: C1020querying.log DIFFERS over about 123 lines.
run_tests: C1030selecting...
run_tests: C1030selecting.log DIFFERS over about 63 lines.
run_tests: C1035wildcards...
run_tests: C1035wildcards.log DIFFERS over about 53 lines.
run_tests: C1040editing...
run_tests: C1040editing.log DIFFERS over about 260 lines.
run_tests: C1050fitting...
run_tests: C1050fitting.log DIFFERS over about 77 lines.
run_tests: C1060controlling...
run_tests: C1060controlling.log DIFFERS over about 7 lines.
run_tests: C1070exporting...
run_tests: C1070exporting.log DIFFERS over about 27 lines.
run_tests: C1080isomore...
run_tests: C1080isomore.log DIFFERS over about 142 lines.
run_tests: C1090coulomb...
run_tests: C1090coulomb.log DIFFERS over about 23 lines.
run_tests: C1095slice...
run_tests: C1095slice.log DIFFERS over about 33 lines.
run_tests: C1100do...
run_tests: C1100do.log DIFFERS over about 40 lines.
run_tests: C1110matrix_mode...
run_tests: C1110matrix_mode.log DIFFERS over about 127 lines.
run_tests: C1200matrix_maps...
run_tests: C1200matrix_maps.log DIFFERS over about 60 lines.
run_tests: C1300extras...
run_tests: C1300extras.log DIFFERS over about 38 lines.
run_tests: C2000returns...
run_tests: C2000returns.log DIFFERS over about 121 lines.
I: pybuild pybuild:310: rm -rf /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/test
make[1]: Leaving directory '/build/reproducible-path/pymol-2.4.0+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary --with python3 --buildsystem pybuild
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_installdirs -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol
running install
running build
running build_py
running build_ext
running install_lib
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/place.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/io.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bonds.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/lst.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mae.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cc1.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_residues.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/hetatm.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gms.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_amber.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_residues.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/neighbor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/charge.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/arc.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_mmff.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmd.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cif.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/dictdb.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/brick.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/solvate.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pkl.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber99.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/sdf.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/models.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_amber.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/map.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gamess1.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cpv.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/amber.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/realtime.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/state.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/keyword.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pdb.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/io.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/amber99.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/assign.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/formal_charges.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_mmff.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mass.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/xyz.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/util.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/realtime.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/state.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/commands.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol2.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/cmd2.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/keymapping.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_map.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mae.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_object.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_aln.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_traj.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/props.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/askpartial.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/colors.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/movieexport.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/fetch.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/png.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/render.ui -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/volume.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/properties_dialog.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/file_dialogs.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/builder.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pml.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/python.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_tk.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/TextEditor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Setting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PMGApp.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/volume.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/ColorEditor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Demo.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/SetEditor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/builder.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/TextEditor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glut
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glut
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/gl
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/gl
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glu
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glu
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/morphing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selecting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/contrib
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/contrib/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/contrib
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/monitoring.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/lazyio.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/distance.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/mutagenesis.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/cleanup.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/charge.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/message.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/benchmark.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/sculpting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pseudoatom.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/density.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/label.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/stereodemo.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/fedora.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/appearance.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/demo.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/security.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/renaming.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/box.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/annotation.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/toggle.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/openvr.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/measurement.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/command.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/dragging.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pair_fit.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/filter.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/util.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/viewing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/commanding.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/setting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/externing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/api.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/querying.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorramping.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/creating.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizarding.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parsing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/experimenting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keywords.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_gui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cmd.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editor.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/checking.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/computing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/seqalign.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorprinting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__main__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/internal.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/moving.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cgo.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/controlling.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/pymolhttpd.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parser.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/preset.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/repository.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui_qt.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/legacysupport.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/installation.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants_palette.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/helping.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/vfont.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/completing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/locking.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/menu.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/gui.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/feedingback.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xray.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/movie.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keyboard.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/importing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/invocation.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/exporting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/headering.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/fitting.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selector.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/rpc.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/callback.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/povray.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xwin.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/diagnosing.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/utils.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
copying /build/reproducible-path/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/__init__.py -> /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/place.py to place.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/io.py to io.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bonds.py to bonds.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein.py to protein.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/lst.py to lst.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mae.py to mae.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cc1.py to cc1.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_residues.py to water_residues.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/hetatm.py to hetatm.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gms.py to gms.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_amber.py to water_amber.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_residues.py to protein_residues.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/neighbor.py to neighbor.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/charge.py to charge.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/arc.py to arc.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmd.py to mmd.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cif.py to cif.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/dictdb.py to dictdb.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/brick.py to brick.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/solvate.py to solvate.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pkl.py to pkl.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/sdf.py to sdf.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/models.py to models.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_amber.py to bond_amber.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/map.py to map.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gamess1.py to gamess1.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol.py to mol.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cpv.py to cpv.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/amber.py to amber.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/realtime.py to realtime.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/state.py to state.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/keyword.py to keyword.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber.py to protein_amber.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pdb.py to pdb.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/io.py to io.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/amber99.py to amber99.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/assign.py to assign.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mass.py to mass.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/xyz.py to xyz.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/util.py to util.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/realtime.py to realtime.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/state.py to state.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/commands.py to commands.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol2.py to mol2.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/cmd2.py to cmd2.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/volume.py to volume.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/builder.py to builder.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-39.pyc
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byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-39.pyc
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byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/invocation.py to invocation.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/exporting.py to exporting.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/headering.py to headering.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/fitting.py to fitting.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selector.py to selector.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/rpc.py to rpc.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/callback.py to callback.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/povray.py to povray.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xwin.py to xwin.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/diagnosing.py to diagnosing.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/utils.py to utils.cpython-39.pyc
byte-compiling /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/__init__.py to __init__.cpython-39.pyc
running install_egg_info
Writing /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol-2.4.0.egg-info
creating /build/reproducible-path/pymol-2.4.0+dfsg/debian/python3-pymol/usr/bin
debian/rules override_dh_install-arch
make[1]: Entering directory '/build/reproducible-path/pymol-2.4.0+dfsg'
dh_numpy3
dh_install
rm -rf debian/python*pymol/usr/bin
make[1]: Leaving directory '/build/reproducible-path/pymol-2.4.0+dfsg'
debian/rules override_dh_install-indep
make[1]: Entering directory '/build/reproducible-path/pymol-2.4.0+dfsg'
sed -e s/@PYTHON_VERSION@/3/g < debian/pymol.launch.in > debian/pymol.launch
pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./debian/pymolRef.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-01-09> xparse <2020-03-03>
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2020/04/10 v1.4m Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
No file pymol-ref-card.aux.
Underfull \hbox (badness 10000) in paragraph at lines 78--79
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(debian/pymol-ref-card.aux)
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm0900
mkdir: cannot create directory '././nonexistent': Permission denied
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm0900
This is METAFONT, Version 2.7182818 (TeX Live 2020/Debian) (preloaded base=mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm0900.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf
Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf
Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf
Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf
Ok [100] [109] [98] [99] [108])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf
Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44]
[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95]
[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137]
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149]
[150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161]
[162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174]
[175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf
Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf
Ok [185] [178] [179] [170] [186])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf
Ok [188] [189] [190]) ) ) )
(some charht values had to be adjusted by as much as 0.06744pt)
Font metrics written on tcrm0900.tfm.
Output written on tcrm0900.600gf (128 characters, 21392 bytes).
Transcript written on tcrm0900.log.
mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm0900.600pk: successfully generated.
)
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/tcrm0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmitt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
mi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on debian/pymol-ref-card.pdf (2 pages, 101759 bytes).
Transcript written on debian/pymol-ref-card.log.
dh_install
install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol
make[1]: Leaving directory '/build/reproducible-path/pymol-2.4.0+dfsg'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installexamples -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installinit -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_installmime -O--buildsystem=pybuild
dh_lintian -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
debian/rules override_dh_compress
make[1]: Entering directory '/build/reproducible-path/pymol-2.4.0+dfsg'
dh_compress -Xpdb
make[1]: Leaving directory '/build/reproducible-path/pymol-2.4.0+dfsg'
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_dwz -O--buildsystem=pybuild
dwz: debian/python3-pymol/usr/lib/python3/dist-packages/pymol/_cmd.cpython-39-i386-linux-gnu.so: DWARF compression not beneficial - old size 18898222 new size 19010779
dh_strip -O--buildsystem=pybuild
dh_makeshlibs -O--buildsystem=pybuild
dh_shlibdeps -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'pymol' in '../pymol_2.4.0+dfsg-2_all.deb'.
dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.4.0+dfsg-2_i386.deb'.
dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.4.0+dfsg-2_i386.deb'.
dpkg-deb: building package 'pymol-data' in '../pymol-data_2.4.0+dfsg-2_all.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../pymol_2.4.0+dfsg-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/101209/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/101209/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/101209 and its subdirectories
I: Current time: Thu Feb 20 13:09:03 +14 2025
I: pbuilder-time-stamp: 1740006543