I: pbuilder: network access will be disabled during build
I: Current time: Thu Aug 19 14:24:12 +14 2021
I: pbuilder-time-stamp: 1629332652
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [r-bioc-shortread_1.48.0-2.dsc]
I: copying [./r-bioc-shortread_1.48.0.orig.tar.gz]
I: copying [./r-bioc-shortread_1.48.0-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.0zGWYKAs/trustedkeys.kbx': General error
gpgv: Signature made Mon Feb 8 01:37:30 2021 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.48.0-2.dsc
dpkg-source: info: extracting r-bioc-shortread in r-bioc-shortread-1.48.0
dpkg-source: info: unpacking r-bioc-shortread_1.48.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-shortread_1.48.0-2.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/12393/tmp/hooks/D01_modify_environment starting
debug: Running on ionos12-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/12393/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/12393/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
BASH_VERSION='5.1.4(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=i386
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7'
DIRSTACK=()
DISTRIBUTION=
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=i686
HOST_ARCH=i386
IFS='
'
INVOCATION_ID=e952c261664f4ce8affeb6bb0c35a1af
LANG=C
LANGUAGE=de_CH:de
LC_ALL=C
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
MACHTYPE=i686-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=12393
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ffVOaaiApN/pbuilderrc_7MoD --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ffVOaaiApN/b2 --logfile b2/build.log r-bioc-shortread_1.48.0-2.dsc'
SUDO_GID=112
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://78.137.99.97:3128
I: uname -a
Linux i-capture-the-hostname 5.10.0-8-686-pae #1 SMP Debian 5.10.46-4 (2021-08-03) i686 GNU/Linux
I: ls -l /bin
total 5784
-rwxr-xr-x 1 root root 1367848 Aug 5 10:25 bash
-rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2
-rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep
-rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2
-rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore
-rwxr-xr-x 1 root root 38824 Sep 23 2020 cat
-rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp
-rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod
-rwxr-xr-x 1 root root 75752 Sep 23 2020 chown
-rwxr-xr-x 1 root root 157960 Sep 23 2020 cp
-rwxr-xr-x 1 root root 128724 Dec 11 2020 dash
-rwxr-xr-x 1 root root 124904 Sep 23 2020 date
-rwxr-xr-x 1 root root 92172 Sep 23 2020 dd
-rwxr-xr-x 1 root root 100752 Sep 23 2020 df
-rwxr-xr-x 1 root root 153964 Sep 23 2020 dir
-rwxr-xr-x 1 root root 83644 Jul 29 09:09 dmesg
lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname
-rwxr-xr-x 1 root root 34664 Sep 23 2020 echo
-rwxr-xr-x 1 root root 28 Nov 10 2020 egrep
-rwxr-xr-x 1 root root 34664 Sep 23 2020 false
-rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep
-rwxr-xr-x 1 root root 71928 Jul 29 09:09 findmnt
-rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount
-rwxr-xr-x 1 root root 210488 Nov 10 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip
-rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe
-rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip
-rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname
-rwxr-xr-x 1 root root 83980 Sep 23 2020 ln
-rwxr-xr-x 1 root root 55572 Feb 8 2020 login
-rwxr-xr-x 1 root root 153964 Sep 23 2020 ls
-rwxr-xr-x 1 root root 153124 Jul 29 09:09 lsblk
-rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir
-rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod
-rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp
-rwxr-xr-x 1 root root 58920 Jul 29 09:09 more
-rwsr-xr-x 1 root root 50720 Jul 29 09:09 mount
-rwxr-xr-x 1 root root 13856 Jul 29 09:09 mountpoint
-rwxr-xr-x 1 root root 157996 Sep 23 2020 mv
lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd
lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash
-rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink
-rwxr-xr-x 1 root root 75720 Sep 23 2020 rm
-rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir
-rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts
-rwxr-xr-x 1 root root 125036 Dec 23 2018 sed
lrwxrwxrwx 1 root root 4 Aug 19 14:33 sh -> bash
lrwxrwxrwx 1 root root 4 Aug 16 23:27 sh.distrib -> dash
-rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep
-rwxr-xr-x 1 root root 83880 Sep 23 2020 stty
-rwsr-xr-x 1 root root 79396 Jul 29 09:09 su
-rwxr-xr-x 1 root root 34696 Sep 23 2020 sync
-rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar
-rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile
-rwxr-xr-x 1 root root 108520 Sep 23 2020 touch
-rwxr-xr-x 1 root root 34664 Sep 23 2020 true
-rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Jul 29 09:09 umount
-rwxr-xr-x 1 root root 34664 Sep 23 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress
-rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir
-rwxr-xr-x 1 root root 63024 Jul 29 09:09 wdctl
lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat
-rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp
-rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff
-rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep
-rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce
-rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep
-rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless
-rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore
-rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew
I: user script /srv/workspace/pbuilder/12393/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector, r-bioc-rhtslib
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19675 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-r; however:
Package dh-r is not installed.
pbuilder-satisfydepends-dummy depends on r-base-dev; however:
Package r-base-dev is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.23.3); however:
Package r-bioc-biocgenerics is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however:
Package r-bioc-biocparallel is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-biostrings (>= 2.47.6); however:
Package r-bioc-biostrings is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools (>= 1.31.2); however:
Package r-bioc-rsamtools is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-genomicalignments (>= 1.15.6); however:
Package r-bioc-genomicalignments is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however:
Package r-bioc-biobase is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.17.25); however:
Package r-bioc-s4vectors is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.13.12); however:
Package r-bioc-iranges is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb (>= 1.15.2); however:
Package r-bioc-genomeinfodb is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.31.8); however:
Package r-bioc-genomicranges is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-hwriter; however:
Package r-cran-hwriter is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-zlibbioc; however:
Package r-bioc-zlibbioc is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-lattice; however:
Package r-cran-lattice is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-latticeextra; however:
Package r-cran-latticeextra is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however:
Package r-bioc-xvector is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-rhtslib; however:
Package r-bioc-rhtslib is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu67{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix2{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp6{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-biostrings{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-bh{a} r-cran-bitops{a} r-cran-crayon{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-hwriter{a} r-cran-jpeg{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-latticeextra{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-png{a} r-cran-rcolorbrewer{a} r-cran-rcurl{a} r-cran-snow{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libclone-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-annotate r-bioc-shortread r-cran-batchjobs r-cran-batchtools r-cran-codetools r-cran-digest r-cran-doparallel r-cran-mockery r-cran-rmpi r-cran-runit r-cran-survival r-cran-testit r-cran-testthat r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 208 newly installed, 0 to remove and 0 not upgraded.
Need to get 163 MB of archives. After unpacking 508 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8 [149 kB]
Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB]
Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB]
Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB]
Get: 6 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB]
Get: 7 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB]
Get: 8 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB]
Get: 9 http://deb.debian.org/debian bullseye/main i386 openssl i386 1.1.1k-1 [860 kB]
Get: 10 http://deb.debian.org/debian bullseye/main i386 ca-certificates all 20210119 [158 kB]
Get: 11 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB]
Get: 12 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB]
Get: 13 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB]
Get: 14 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB]
Get: 15 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB]
Get: 16 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB]
Get: 17 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB]
Get: 18 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB]
Get: 19 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 20 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB]
Get: 21 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB]
Get: 22 http://deb.debian.org/debian bullseye/main i386 dctrl-tools i386 2.24-3 [105 kB]
Get: 23 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB]
Get: 24 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB]
Get: 25 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 26 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 27 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 28 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 29 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 30 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB]
Get: 31 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB]
Get: 32 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB]
Get: 33 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB]
Get: 34 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB]
Get: 35 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 36 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 37 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB]
Get: 38 http://deb.debian.org/debian bullseye/main i386 zip i386 3.0-12 [240 kB]
Get: 39 http://deb.debian.org/debian bullseye/main i386 unzip i386 6.0-26 [171 kB]
Get: 40 http://deb.debian.org/debian bullseye/main i386 libpaper1 i386 1.1.28+b1 [21.7 kB]
Get: 41 http://deb.debian.org/debian bullseye/main i386 libpaper-utils i386 1.1.28+b1 [18.6 kB]
Get: 42 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 43 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB]
Get: 44 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB]
Get: 45 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB]
Get: 46 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB]
Get: 47 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB]
Get: 48 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB]
Get: 49 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB]
Get: 50 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB]
Get: 51 http://deb.debian.org/debian bullseye/main i386 libpixman-1-0 i386 0.40.0-1 [545 kB]
Get: 52 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 53 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB]
Get: 54 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB]
Get: 55 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 56 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB]
Get: 57 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.2-1 [311 kB]
Get: 58 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.2-1 [794 kB]
Get: 59 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB]
Get: 60 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB]
Get: 61 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB]
Get: 62 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB]
Get: 63 http://deb.debian.org/debian bullseye/main i386 libcairo2 i386 1.16.0-5 [746 kB]
Get: 64 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB]
Get: 65 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB]
Get: 66 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB]
Get: 67 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB]
Get: 68 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB]
Get: 69 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB]
Get: 70 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB]
Get: 71 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.3+b1 [372 kB]
Get: 72 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB]
Get: 73 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB]
Get: 74 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB]
Get: 75 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB]
Get: 76 http://deb.debian.org/debian bullseye/main i386 fontconfig i386 2.13.1-4.2 [417 kB]
Get: 77 http://deb.debian.org/debian bullseye/main i386 libfribidi0 i386 1.0.8-2 [65.4 kB]
Get: 78 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 79 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB]
Get: 80 http://deb.debian.org/debian bullseye/main i386 libthai-data all 0.1.28-3 [170 kB]
Get: 81 http://deb.debian.org/debian bullseye/main i386 libdatrie1 i386 0.2.13-1 [44.5 kB]
Get: 82 http://deb.debian.org/debian bullseye/main i386 libthai0 i386 0.1.28-3 [55.3 kB]
Get: 83 http://deb.debian.org/debian bullseye/main i386 libpango-1.0-0 i386 1.46.2-3 [197 kB]
Get: 84 http://deb.debian.org/debian bullseye/main i386 libpangoft2-1.0-0 i386 1.46.2-3 [65.1 kB]
Get: 85 http://deb.debian.org/debian bullseye/main i386 libpangocairo-1.0-0 i386 1.46.2-3 [51.9 kB]
Get: 86 http://deb.debian.org/debian bullseye/main i386 libtcl8.6 i386 8.6.11+dfsg-1 [1082 kB]
Get: 87 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB]
Get: 88 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB]
Get: 89 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1 [269 kB]
Get: 90 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1 [305 kB]
Get: 91 http://deb.debian.org/debian bullseye/main i386 libxft2 i386 2.3.2-2 [58.2 kB]
Get: 92 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB]
Get: 93 http://deb.debian.org/debian bullseye/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB]
Get: 94 http://deb.debian.org/debian bullseye/main i386 libtk8.6 i386 8.6.11-2 [825 kB]
Get: 95 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB]
Get: 96 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB]
Get: 97 http://deb.debian.org/debian bullseye/main i386 libxt6 i386 1:1.2.0-1 [195 kB]
Get: 98 http://deb.debian.org/debian bullseye/main i386 r-base-core i386 4.0.4-1 [25.1 MB]
Get: 99 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB]
Get: 100 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB]
Get: 101 http://deb.debian.org/debian bullseye/main i386 gfortran i386 4:10.2.1-1 [1436 B]
Get: 102 http://deb.debian.org/debian bullseye/main i386 libblas-dev i386 3.9.0-3 [157 kB]
Get: 103 http://deb.debian.org/debian bullseye/main i386 liblapack-dev i386 3.9.0-3 [3759 kB]
Get: 104 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB]
Get: 105 http://deb.debian.org/debian bullseye/main i386 libncurses-dev i386 6.2+20201114-2 [373 kB]
Get: 106 http://deb.debian.org/debian bullseye/main i386 libncurses5-dev i386 6.2+20201114-2 [932 B]
Get: 107 http://deb.debian.org/debian bullseye/main i386 libreadline-dev i386 8.1-1 [161 kB]
Get: 108 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB]
Get: 109 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB]
Get: 110 http://deb.debian.org/debian bullseye/main i386 libpcre2-16-0 i386 10.36-2 [231 kB]
Get: 111 http://deb.debian.org/debian bullseye/main i386 libpcre2-32-0 i386 10.36-2 [219 kB]
Get: 112 http://deb.debian.org/debian bullseye/main i386 libpcre2-posix2 i386 10.36-2 [49.2 kB]
Get: 113 http://deb.debian.org/debian bullseye/main i386 libpcre2-dev i386 10.36-2 [739 kB]
Get: 114 http://deb.debian.org/debian bullseye/main i386 libpcre16-3 i386 2:8.39-13 [258 kB]
Get: 115 http://deb.debian.org/debian bullseye/main i386 libpcre32-3 i386 2:8.39-13 [249 kB]
Get: 116 http://deb.debian.org/debian bullseye/main i386 libpcrecpp0v5 i386 2:8.39-13 [153 kB]
Get: 117 http://deb.debian.org/debian bullseye/main i386 libpcre3-dev i386 2:8.39-13 [656 kB]
Get: 118 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB]
Get: 119 http://deb.debian.org/debian bullseye/main i386 libpng-dev i386 1.6.37-3 [307 kB]
Get: 120 http://deb.debian.org/debian bullseye/main i386 libbz2-dev i386 1.0.8-4 [31.3 kB]
Get: 121 http://deb.debian.org/debian bullseye/main i386 liblzma-dev i386 5.2.5-2 [240 kB]
Get: 122 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-7 [209 kB]
Get: 123 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-7 [9801 kB]
Get: 124 http://deb.debian.org/debian bullseye/main i386 libxmuu1 i386 2:1.1.2-2+b3 [24.2 kB]
Get: 125 http://deb.debian.org/debian bullseye/main i386 xauth i386 1:1.1-1 [41.2 kB]
Get: 126 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB]
Get: 127 http://deb.debian.org/debian bullseye/main i386 r-base-dev all 4.0.4-1 [4484 B]
Get: 128 http://deb.debian.org/debian bullseye/main i386 libfile-which-perl all 1.23-1 [16.6 kB]
Get: 129 http://deb.debian.org/debian bullseye/main i386 libswitch-perl all 2.17-2.1 [20.0 kB]
Get: 130 http://deb.debian.org/debian bullseye/main i386 libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get: 131 http://deb.debian.org/debian bullseye/main i386 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 132 http://deb.debian.org/debian bullseye/main i386 libhttp-date-perl all 6.05-1 [10.4 kB]
Get: 133 http://deb.debian.org/debian bullseye/main i386 libio-html-perl all 1.004-2 [16.1 kB]
Get: 134 http://deb.debian.org/debian bullseye/main i386 liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get: 135 http://deb.debian.org/debian bullseye/main i386 liburi-perl all 5.08-1 [90.6 kB]
Get: 136 http://deb.debian.org/debian bullseye/main i386 libhttp-message-perl all 6.28-1 [79.6 kB]
Get: 137 http://deb.debian.org/debian bullseye/main i386 libparams-util-perl i386 1.102-1+b1 [26.3 kB]
Get: 138 http://deb.debian.org/debian bullseye/main i386 libsub-install-perl all 0.928-1.1 [10.8 kB]
Get: 139 http://deb.debian.org/debian bullseye/main i386 libdata-optlist-perl all 0.110-1.1 [10.8 kB]
Get: 140 http://deb.debian.org/debian bullseye/main i386 libb-hooks-op-check-perl i386 0.22-1+b3 [11.4 kB]
Get: 141 http://deb.debian.org/debian bullseye/main i386 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get: 142 http://deb.debian.org/debian bullseye/main i386 libdevel-callchecker-perl i386 0.008-1+b2 [15.9 kB]
Get: 143 http://deb.debian.org/debian bullseye/main i386 libparams-classify-perl i386 0.015-1+b3 [26.4 kB]
Get: 144 http://deb.debian.org/debian bullseye/main i386 libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get: 145 http://deb.debian.org/debian bullseye/main i386 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get: 146 http://deb.debian.org/debian bullseye/main i386 libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get: 147 http://deb.debian.org/debian bullseye/main i386 libpackage-stash-perl all 0.39-1 [21.9 kB]
Get: 148 http://deb.debian.org/debian bullseye/main i386 libclass-load-perl all 0.25-1 [16.1 kB]
Get: 149 http://deb.debian.org/debian bullseye/main i386 libclass-load-xs-perl i386 0.10-1+b5 [14.7 kB]
Get: 150 http://deb.debian.org/debian bullseye/main i386 libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get: 151 http://deb.debian.org/debian bullseye/main i386 libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get: 152 http://deb.debian.org/debian bullseye/main i386 libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get: 153 http://deb.debian.org/debian bullseye/main i386 libclass-c3-perl all 0.35-1 [22.9 kB]
Get: 154 http://deb.debian.org/debian bullseye/main i386 libmro-compat-perl all 0.13-1 [12.2 kB]
Get: 155 http://deb.debian.org/debian bullseye/main i386 libsub-identify-perl i386 0.14-1+b3 [12.2 kB]
Get: 156 http://deb.debian.org/debian bullseye/main i386 libdevel-overloadinfo-perl all 0.005-1 [7212 B]
Get: 157 http://deb.debian.org/debian bullseye/main i386 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get: 158 http://deb.debian.org/debian bullseye/main i386 libsub-exporter-perl all 0.987-1 [47.2 kB]
Get: 159 http://deb.debian.org/debian bullseye/main i386 libeval-closure-perl all 0.14-1 [11.5 kB]
Get: 160 http://deb.debian.org/debian bullseye/main i386 libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get: 161 http://deb.debian.org/debian bullseye/main i386 libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get: 162 http://deb.debian.org/debian bullseye/main i386 libsub-name-perl i386 0.26-1+b1 [14.1 kB]
Get: 163 http://deb.debian.org/debian bullseye/main i386 libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get: 164 http://deb.debian.org/debian bullseye/main i386 libpackage-stash-xs-perl i386 0.29-1+b2 [21.2 kB]
Get: 165 http://deb.debian.org/debian bullseye/main i386 libmoose-perl i386 2.2014-2 [804 kB]
Get: 166 http://deb.debian.org/debian bullseye/main i386 libvariable-magic-perl i386 0.62-1+b3 [46.2 kB]
Get: 167 http://deb.debian.org/debian bullseye/main i386 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get: 168 http://deb.debian.org/debian bullseye/main i386 libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get: 169 http://deb.debian.org/debian bullseye/main i386 libcurl3-gnutls i386 7.74.0-1.3+b1 [368 kB]
Get: 170 http://deb.debian.org/debian bullseye/main i386 libwww-curl-perl i386 4.17-7+b1 [63.5 kB]
Get: 171 http://deb.debian.org/debian bullseye/main i386 libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get: 172 http://deb.debian.org/debian bullseye/main i386 dh-r all 20210303 [41.8 kB]
Get: 173 http://deb.debian.org/debian bullseye/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB]
Get: 174 http://deb.debian.org/debian bullseye/main i386 libboost-dev i386 1.74.0.3 [4548 B]
Get: 175 http://deb.debian.org/debian bullseye/main i386 r-bioc-biocgenerics all 0.36.0-1 [648 kB]
Get: 176 http://deb.debian.org/debian bullseye/main i386 r-bioc-biobase i386 2.50.0-1 [2230 kB]
Get: 177 http://deb.debian.org/debian bullseye/main i386 r-cran-formatr all 1.7-2 [151 kB]
Get: 178 http://deb.debian.org/debian bullseye/main i386 r-cran-lambda.r all 1.2.4-2 [118 kB]
Get: 179 http://deb.debian.org/debian bullseye/main i386 r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get: 180 http://deb.debian.org/debian bullseye/main i386 r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get: 181 http://deb.debian.org/debian bullseye/main i386 r-cran-snow all 1:0.4.3-2 [109 kB]
Get: 182 http://deb.debian.org/debian bullseye/main i386 r-cran-bh all 1.74.0-1 [5196 B]
Get: 183 http://deb.debian.org/debian bullseye/main i386 r-bioc-biocparallel i386 1.24.1-1 [1142 kB]
Get: 184 http://deb.debian.org/debian bullseye/main i386 r-bioc-s4vectors i386 0.28.1-1 [2034 kB]
Get: 185 http://deb.debian.org/debian bullseye/main i386 r-bioc-iranges i386 2.24.1-1 [2176 kB]
Get: 186 http://deb.debian.org/debian bullseye/main i386 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B]
Get: 187 http://deb.debian.org/debian bullseye/main i386 r-bioc-xvector i386 0.30.0-1 [622 kB]
Get: 188 http://deb.debian.org/debian bullseye/main i386 r-cran-crayon all 1.4.0-1 [143 kB]
Get: 189 http://deb.debian.org/debian bullseye/main i386 r-bioc-biostrings i386 2.58.0-1 [14.2 MB]
Get: 190 http://deb.debian.org/debian bullseye/main i386 r-cran-lattice i386 0.20-41-1+b1 [1162 kB]
Get: 191 http://deb.debian.org/debian bullseye/main i386 r-cran-matrix i386 1.3-2-1 [3582 kB]
Get: 192 http://deb.debian.org/debian bullseye/main i386 r-cran-matrixstats i386 0.58.0-3 [642 kB]
Get: 193 http://deb.debian.org/debian bullseye/main i386 r-bioc-matrixgenerics all 1.2.1-4 [288 kB]
Get: 194 http://deb.debian.org/debian bullseye/main i386 r-bioc-delayedarray i386 0.16.1+dfsg-1 [1800 kB]
Get: 195 http://deb.debian.org/debian bullseye/main i386 r-cran-bitops i386 1.0-6-5 [23.8 kB]
Get: 196 http://deb.debian.org/debian bullseye/main i386 r-cran-rcurl i386 1.98-1.2-1+b1 [761 kB]
Get: 197 http://deb.debian.org/debian bullseye/main i386 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB]
Get: 198 http://deb.debian.org/debian bullseye/main i386 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB]
Get: 199 http://deb.debian.org/debian bullseye/main i386 r-bioc-genomicranges i386 1.42.0+dfsg-1 [1856 kB]
Get: 200 http://deb.debian.org/debian bullseye/main i386 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB]
Get: 201 http://deb.debian.org/debian bullseye/main i386 r-bioc-rhtslib i386 1.22.0+dfsg-1 [1057 kB]
Get: 202 http://deb.debian.org/debian bullseye/main i386 r-bioc-rsamtools i386 2.6.0-1 [3690 kB]
Get: 203 http://deb.debian.org/debian bullseye/main i386 r-bioc-genomicalignments i386 1.26.0-1 [2159 kB]
Get: 204 http://deb.debian.org/debian bullseye/main i386 r-cran-hwriter all 1.3.2-4 [162 kB]
Get: 205 http://deb.debian.org/debian bullseye/main i386 r-cran-jpeg i386 0.1-8.1-1+b1 [30.8 kB]
Get: 206 http://deb.debian.org/debian bullseye/main i386 r-cran-png i386 0.1-7-4 [41.3 kB]
Get: 207 http://deb.debian.org/debian bullseye/main i386 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB]
Get: 208 http://deb.debian.org/debian bullseye/main i386 r-cran-latticeextra all 0.6-29-3 [2192 kB]
Fetched 163 MB in 1min 28s (1861 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
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invoke-rc.d: could not determine current runlevel
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Setting up libfreetype6:i386 (2.10.4+dfsg-1) ...
Setting up liblapack-dev:i386 (3.9.0-3) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode
Setting up gfortran-10 (10.2.1-6) ...
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Creating config file /etc/R/Renviron with new version
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Setting up r-bioc-biocgenerics (0.36.0-1) ...
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Setting up r-bioc-biostrings (2.58.0-1) ...
Setting up r-bioc-rsamtools (2.6.0-1) ...
Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.26.0-1) ...
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Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
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Initializing package states...
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Building tag database...
-> Finished parsing the build-deps
I: Building the package
hostname: Name or service not known
I: Running cd /build/r-bioc-shortread-1.48.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-shortread_1.48.0-2_source.changes
dpkg-buildpackage: info: source package r-bioc-shortread
dpkg-buildpackage: info: source version 1.48.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary
dh binary --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
dh_auto_install -O--buildsystem=R
I: R packages needed for DEP8: runit
I: R Package: ShortRead Version: 1.48.0
I: Building using R version 4.0.4-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sun, 07 Feb 2021 12:28:32 +0100
mkdir -p /build/r-bioc-shortread-1.48.0/debian/r-bioc-shortread/usr/lib/R/site-library
R CMD INSTALL -l /build/r-bioc-shortread-1.48.0/debian/r-bioc-shortread/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 07 Feb 2021 12:28:32 +0100'"
* installing *source* package 'ShortRead' ...
** using staged installation
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking for gzeof in -lz... yes
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of unsigned long... 4
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/build/r-bioc-shortread-1.48.0/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_ShortRead.c -o R_init_ShortRead.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c alphabet.c -o alphabet.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c count.c -o count.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_bowtie.c -o io_bowtie.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_soap.c -o io_soap.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readBfaToc.cc -o readBfaToc.o
readBfaToc.cc: In function 'SEXPREC* readBfaToc(SEXP)':
readBfaToc.cc:35:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
35 | (void) fread( seq_name, sizeof(char), name_len, fp );
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readBfaToc.cc:36:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
36 | (void) fread( &seq_ori_len, sizeof(int), 1, fp );
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readBfaToc.cc:37:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
37 | (void) fread( &seq_len, sizeof(int), 1, fp );
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_maq_map.cc -o read_maq_map.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sampler.c -o sampler.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4GyIYX/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xsnap.c -o xsnap.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o count.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/build/r-bioc-shortread-1.48.0/src'
make[1]: Entering directory '/build/r-bioc-shortread-1.48.0/src'
make[1]: Leaving directory '/build/r-bioc-shortread-1.48.0/src'
installing to /build/r-bioc-shortread-1.48.0/debian/r-bioc-shortread/usr/lib/R/site-library/00LOCK-r-bioc-shortread-1.48.0/00new/ShortRead/libs
** R
** inst
** byte-compile and prepare package for lazy loading
code for methods in class "ShortReadFile" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqFileReader" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "QAData" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Snapshot" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "SpTrellis" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqSampler" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqStreamer" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ShortRead)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.23.3)
I: Using r-bioc-biocparallel for Depends:BiocParallel
I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2)
I: Using r-bioc-genomicalignments for Depends:GenomicAlignments (>= 1.15.6)
I: Using r-cran-runit for Recommends:runit
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-bioc-biomart for Suggests:biomaRt
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:yeastNagalakshmi
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.17.25)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.12)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.15.2)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.31.8)
I: Using r-cran-hwriter for Imports:hwriter
I: Using r-bioc-zlibbioc for Imports:zlibbioc
I: Using r-cran-lattice for Imports:lattice
I: Using r-cran-latticeextra for Imports:latticeExtra
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: Using r-bioc-biostrings for LinkingTo:Biostrings
I: Using r-bioc-rhtslib for LinkingTo:Rhtslib
I: Using r-bioc-zlibbioc for LinkingTo:zlibbioc
I: BioConductor API version: r-api-bioc-3.12
I: Use r-bioc-shortread as Debian binary package for variables substitution
dh_installdocs -O--buildsystem=R
dh_installchangelogs -O--buildsystem=R
dh_installsystemduser -O--buildsystem=R
dh_perl -O--buildsystem=R
dh_link -O--buildsystem=R
dh_strip_nondeterminism -O--buildsystem=R
dh_compress -O--buildsystem=R
dh_fixperms -O--buildsystem=R
dh_missing -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -O--buildsystem=R
dh_gencontrol -O--buildsystem=R
dh_md5sums -O--buildsystem=R
dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-bioc-shortread' in '../r-bioc-shortread_1.48.0-2_i386.deb'.
dpkg-deb: building package 'r-bioc-shortread-dbgsym' in '../r-bioc-shortread-dbgsym_1.48.0-2_i386.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../r-bioc-shortread_1.48.0-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/12393/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/12393/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/12393 and its subdirectories
I: Current time: Thu Aug 19 14:45:43 +14 2021
I: pbuilder-time-stamp: 1629333943