I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 20 04:26:27 +14 2022 I: pbuilder-time-stamp: 1655648787 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [tigr-glimmer_3.02b-5.dsc] I: copying [./tigr-glimmer_3.02b.orig.tar.gz] I: copying [./tigr-glimmer_3.02b-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.j_MzQvj5/trustedkeys.kbx': General error gpgv: Signature made Thu May 14 20:41:04 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tigr-glimmer_3.02b-5.dsc dpkg-source: info: extracting tigr-glimmer in tigr-glimmer-3.02b dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz dpkg-source: info: unpacking tigr-glimmer_3.02b-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_gcc4.3.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying make-errs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23895/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/23895/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/23895/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=668652fe8a314e568f3733b423b6a9fb LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=23895 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7HUSUIhhxn/pbuilderrc_lrzA --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7HUSUIhhxn/b2 --logfile b2/build.log --extrapackages usrmerge tigr-glimmer_3.02b-5.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 25 2021 bash -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash -rwxr-xr-x 1 root root 124904 Sep 23 2020 date -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd -rwxr-xr-x 1 root root 100752 Sep 23 2020 df -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln -rwxr-xr-x 1 root root 55572 Feb 8 2020 login -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 8 2021 more -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Feb 25 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jun 20 04:26 sh -> bash lrwxrwxrwx 1 root root 4 Jun 18 06:06 sh.distrib -> dash -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty -rwsr-xr-x 1 root root 79396 Feb 8 2021 su -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch -rwxr-xr-x 1 root root 34664 Sep 23 2020 true -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/23895/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 67.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.6 [727 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Fetched 18.6 MB in 0s (87.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../07-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../10-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../25-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.6_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.6) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.6) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.4 kB of archives. After this operation, 156 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 24 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.4 kB in 0s (4409 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21549 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_24_all.deb ... Unpacking usrmerge (24) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (24) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package I: Running cd /build/tigr-glimmer-3.02b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package tigr-glimmer dpkg-buildpackage: info: source version 3.02b-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Etienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/tigr-glimmer-3.02b' dh_clean cd src; make clean make[2]: Entering directory '/build/tigr-glimmer-3.02b/src' cd /build/tigr-glimmer-3.02b/obj; rm -f cd /build/tigr-glimmer-3.02b/lib; rm -f cd /build/tigr-glimmer-3.02b/bin; rm -f rm -f echo "* Make Target is " clean; * Make Target is clean set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " clean " #####"; make clean; cd ..; fi; done; ##### Making Directory /build/tigr-glimmer-3.02b/src/Common clean ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common' if [ -e gene.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; cd /build/tigr-glimmer-3.02b/obj; rm -f delcher.o fasta.o gene.o cd /build/tigr-glimmer-3.02b/lib; rm -f libGLMcommon.a cd /build/tigr-glimmer-3.02b/bin; rm -f rm -f delcher.d fasta.d gene.d make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common' ##### Making Directory /build/tigr-glimmer-3.02b/src/ICM clean ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM' if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; cd /build/tigr-glimmer-3.02b/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o cd /build/tigr-glimmer-3.02b/lib; rm -f libGLMicm.a cd /build/tigr-glimmer-3.02b/bin; rm -f build-icm build-fixed score-fixed rm -f icm.d build-icm.d build-fixed.d score-fixed.d make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM' ##### Making Directory /build/tigr-glimmer-3.02b/src/Glimmer clean ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer' if [ -e test.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; cd /build/tigr-glimmer-3.02b/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o cd /build/tigr-glimmer-3.02b/lib; rm -f cd /build/tigr-glimmer-3.02b/bin; rm -f anomaly glimmer3 long-orfs test rm -f anomaly.d glimmer3.d long-orfs.d test.d make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer' ##### Making Directory /build/tigr-glimmer-3.02b/src/Util clean ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util' if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; cd /build/tigr-glimmer-3.02b/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o cd /build/tigr-glimmer-3.02b/lib; rm -f cd /build/tigr-glimmer-3.02b/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util' make[2]: Leaving directory '/build/tigr-glimmer-3.02b/src' rm -f bin/* lib/* obj/* make[1]: Leaving directory '/build/tigr-glimmer-3.02b' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/tigr-glimmer-3.02b' dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd src && make -j18 "INSTALL=install --strip-program=true" "CFLAGS=-g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/tigr-glimmer-3.02b/src' TGT=objs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /build/tigr-glimmer-3.02b/src/Common all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. if [ -e gene.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. @@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e delcher.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/delcher.o delcher.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" delcher.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e fasta.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/fasta.o fasta.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" fasta.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e gene.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/gene.o gene.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" gene.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition gene.cc: In member function 'bool PWM_t::Read(FILE*)': gene.cc:319:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fscanf (fp, "%d", & width); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ gene.cc:332:14: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 332 | fscanf (fp, "%s", tag); // skip tag in first column | ~~~~~~~^~~~~~~~~~~~~~~ gene.cc:335:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fscanf (fp, "%lf", & x); | ~~~~~~~^~~~~~~~~~~~~~~~ gene.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': gene.cc:848:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 848 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ################### libGLMcommon.a ##################### cd /build/tigr-glimmer-3.02b/obj && \ ar rvs /build/tigr-glimmer-3.02b/lib/libGLMcommon.a delcher.o fasta.o gene.o ar: creating /build/tigr-glimmer-3.02b/lib/libGLMcommon.a a - delcher.o a - fasta.o a - gene.o make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common' ##### Making Directory /build/tigr-glimmer-3.02b/src/ICM all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. @@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e icm.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/icm.o icm.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" icm.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition icm.cc: In member function 'void Fixed_Length_ICM_t::read(const char*)': icm.cc:1491:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ icm.cc:1519:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1519 | fread (permutation, sizeof (int), length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-icm.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/build-icm.o build-icm.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" build-icm.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-fixed.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/build-fixed.o build-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" build-fixed.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e score-fixed.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/score-fixed.o score-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" score-fixed.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition ################### libGLMicm.a ##################### cd /build/tigr-glimmer-3.02b/obj && \ ar rvs /build/tigr-glimmer-3.02b/lib/libGLMicm.a icm.o build-icm.o build-fixed.o score-fixed.o ar: creating /build/tigr-glimmer-3.02b/lib/libGLMicm.a a - icm.o a - build-icm.o a - build-fixed.o a - score-fixed.o ++++++++++++++++++++ build-icm ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-icm.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/build-icm; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/build-icm; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-fixed.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/build-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/build-fixed; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "score-fixed.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/score-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/score-fixed; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM' ##### Making Directory /build/tigr-glimmer-3.02b/src/Glimmer all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. if [ -e test.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. @@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e anomaly.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/anomaly.o anomaly.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" anomaly.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e glimmer3.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/glimmer3.o glimmer3.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" glimmer3.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition glimmer3.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)': glimmer3.cc:2607:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2607 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e long-orfs.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/long-orfs.o long-orfs.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" long-orfs.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition long-orfs.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)': long-orfs.cc:1317:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1317 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e test.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/test.o test.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" test.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition ++++++++++++++++++++ anomaly ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "anomaly.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/anomaly; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/anomaly; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "glimmer3.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a /build/tigr-glimmer-3.02b/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/glimmer3; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a /build/tigr-glimmer-3.02b/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/glimmer3; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "long-orfs.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/long-orfs; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/long-orfs; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ test ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "test.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/test -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/test; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/test -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/test; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer' ##### Making Directory /build/tigr-glimmer-3.02b/src/Util all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. @@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-profile.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/entropy-profile.o entropy-profile.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" entropy-profile.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-score.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/entropy-score.o entropy-score.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" entropy-score.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition entropy-score.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)': entropy-score.cc:327:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 327 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e extract.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/extract.o extract.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" extract.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e multi-extract.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/multi-extract.o multi-extract.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" multi-extract.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e start-codon-distrib.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/start-codon-distrib.o start-codon-distrib.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" start-codon-distrib.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e uncovered.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/uncovered.o uncovered.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" uncovered.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e window-acgt.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/window-acgt.o window-acgt.cc ; \ else \ /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \ " :/build/tigr-glimmer-3.02b/obj" window-acgt.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-profile.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-score.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/entropy-score; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/entropy-score; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "extract.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/extract; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "multi-extract.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/multi-extract; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/multi-extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "start-codon-distrib.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ uncovered ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "uncovered.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/uncovered; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/uncovered; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "window-acgt.o" ] ; then \ cd /build/tigr-glimmer-3.02b/obj; \ cc -o /build/tigr-glimmer-3.02b/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/window-acgt; \ exit ${STATUS}; \ fi; \ else \ cd /build/tigr-glimmer-3.02b/obj; \ g++ -o /build/tigr-glimmer-3.02b/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /build/tigr-glimmer-3.02b/bin/window-acgt; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util' TGT=libs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /build/tigr-glimmer-3.02b/src/Common all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common' ##### Making Directory /build/tigr-glimmer-3.02b/src/ICM all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM' ##### Making Directory /build/tigr-glimmer-3.02b/src/Glimmer all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer' ##### Making Directory /build/tigr-glimmer-3.02b/src/Util all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util' TGT=progs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /build/tigr-glimmer-3.02b/src/Common all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common' ##### Making Directory /build/tigr-glimmer-3.02b/src/ICM all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM' ##### Making Directory /build/tigr-glimmer-3.02b/src/Glimmer all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer' ##### Making Directory /build/tigr-glimmer-3.02b/src/Util all ##### make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util' make[2]: Leaving directory '/build/tigr-glimmer-3.02b/src' make[1]: Leaving directory '/build/tigr-glimmer-3.02b' create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-5_i386.deb'. dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-5_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../tigr-glimmer_3.02b-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/23895/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/23895/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23895 and its subdirectories I: Current time: Mon Jun 20 04:27:07 +14 2022 I: pbuilder-time-stamp: 1655648827