I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 2 12:47:22 -12 2023 I: pbuilder-time-stamp: 1672706842 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [circlator_1.5.5-3.dsc] I: copying [./circlator_1.5.5.orig.tar.gz] I: copying [./circlator_1.5.5-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 3 20:50:26 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./circlator_1.5.5-3.dsc dpkg-source: info: extracting circlator in circlator-1.5.5 dpkg-source: info: unpacking circlator_1.5.5.orig.tar.gz dpkg-source: info: unpacking circlator_1.5.5-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_canu_detection.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/856754/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5409f654b96a48c39121b11692a6636f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='856754' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.SjVHg5X0Xj/pbuilderrc_2kTr --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.SjVHg5X0Xj/b1 --logfile b1/build.log circlator_1.5.5-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 16:21 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/856754/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-python, python3-all, python3-setuptools, python3-openpyxl, python3-jdcal, fastaq (>= 3.12.1), python3-pysam, python3-pymummer, python3-nose, spades, bwa (>= 0.7.12), prodigal, canu (<< 1.8+dfsg-1) | canu (>= 1.8+dfsg-2) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-openpyxl; however: Package python3-openpyxl is not installed. pbuilder-satisfydepends-dummy depends on python3-jdcal; however: Package python3-jdcal is not installed. pbuilder-satisfydepends-dummy depends on fastaq (>= 3.12.1); however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pymummer; however: Package python3-pymummer is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on spades; however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on bwa (>= 0.7.12); however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on prodigal; however: Package prodigal is not installed. pbuilder-satisfydepends-dummy depends on canu (<< 1.8+dfsg-1) | canu (>= 1.8+dfsg-2); however: Package canu is not installed. Package canu is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} aglfn{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bamtools{a} binfmt-support{a} bsdmainutils{a} bwa{a} ca-certificates{a} ca-certificates-java{a} canu{a} debhelper{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gawk{a} gettext{a} gettext-base{a} gnuplot{a} gnuplot-data{a} gnuplot-qt{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} jaligner{a} jarwrapper{a} java-common{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libatinject-jsr330-api-java{a} libatk1.0-0{a} libatk1.0-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbamtools2.5.1{a} libbsd0{a} libcairo2{a} libcommons-compress-java{a} libcommons-parent-java{a} libcroco3{a} libcups2{a} libcurl3-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdeflate0{a} libdouble-conversion1{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevdev2{a} libexpat1{a} libfastutil-java{a} libfile-stripnondeterminism-perl{a} libfilesys-df-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgd3{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk2.0-0{a} libgtk2.0-common{a} libguava-java{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhat-trie0{a} libhts2{a} libice6{a} libicu63{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg62-turbo{a} libjsoncpp1{a} libjsr305-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm7{a} liblua5.3-0{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libmtdev1{a} libncurses6{a} libnghttp2-14{a} libnlopt0{a} libnotify4{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcre2-16-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libprocps7{a} libpsl5{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5gui5{a} libqt5network5{a} libqt5printsupport5{a} libqt5svg5{a} libqt5widgets5{a} libreadline7{a} librsvg2-2{a} librsvg2-common{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libssw-java{a} libssw0{a} libthai-data{a} libthai0{a} libtiff5{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libwxbase3.0-0v5{a} libwxgtk3.0-0v5{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util0{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xkb1{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxxf86vm1{a} libyaml-0-2{a} lsb-base{a} m4{a} man-db{a} mhap{a} mime-support{a} mummer{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} procps{a} prodigal{a} python{a} python-joblib{a} python-minimal{a} python-yaml{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-all{a} python3-distutils{a} python3-et-xmlfile{a} python3-jdcal{a} python3-lib2to3{a} python3-lxml{a} python3-minimal{a} python3-nose{a} python3-openpyxl{a} python3-pkg-resources{a} python3-pymummer{a} python3-pysam{a} python3-setuptools{a} python3.7{a} python3.7-minimal{a} readline-common{a} samtools{a} sensible-utils{a} shared-mime-info{a} spades{a} ucf{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: awesome cinnamon curl cwltool dbus dunst gnome-flashback gnome-shell krb5-locales libarchive-cpio-perl libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk2.0-bin libltdl-dev libmail-sendmail-perl libsasl2-modules libwacom-bin lxqt-notificationd lynx mate-notification-daemon notification-daemon notify-osd plasma-workspace psmisc publicsuffix python-jarabe python-lz4 python-numpy python-psutil python-pytest python-simplejson python3-bs4 python3-html5lib python3-pil python3-pytest qt5-gtk-platformtheme qttranslations5-l10n wget xdg-user-dirs xfce4-notifyd 0 packages upgraded, 259 newly installed, 0 to remove and 0 not upgraded. Need to get 173 MB of archives. After unpacking 769 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 gawk amd64 1:4.2.1+dfsg-1 [660 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libdouble-conversion1 amd64 3.1.0-3 [39.4 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libpcre2-16-0 amd64 10.32-5 [202 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libqt5core5a amd64 5.11.3+dfsg1-1+deb10u4 [1942 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libwayland-server0 amd64 1.16.0-1 [32.5 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libgbm1 amd64 18.3.6-2+deb10u1 [67.8 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libxcb-xfixes0 amd64 1.13.1-2 [103 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 54 http://deb.debian.org/debian buster/main amd64 libegl-mesa0 amd64 18.3.6-2+deb10u1 [135 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libegl1 amd64 1.1.0-1 [33.6 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get: 71 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libevdev2 amd64 1.6.0+dfsg-1 [31.0 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libmtdev1 amd64 1.1.5-1+b1 [22.3 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libgudev-1.0-0 amd64 232-2 [13.6 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libwacom-common all 0.32-1 [39.1 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libwacom2 amd64 0.32-1 [18.8 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libinput-bin amd64 1.12.6-2+deb10u1 [16.9 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libinput10 amd64 1.12.6-2+deb10u1 [107 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libqt5dbus5 amd64 5.11.3+dfsg1-1+deb10u4 [231 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libqt5network5 amd64 5.11.3+dfsg1-1+deb10u4 [673 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libxcb-randr0 amd64 1.13.1-2 [110 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libxcb-shape0 amd64 1.13.1-2 [99.5 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libxcb-xinerama0 amd64 1.13.1-2 [98.9 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libxcb-xkb1 amd64 1.13.1-2 [123 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 xkb-data all 2.26-2 [681 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libxkbcommon0 amd64 0.8.2-1 [123 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libxkbcommon-x11-0 amd64 0.8.2-1 [39.4 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libqt5gui5 amd64 5.11.3+dfsg1-1+deb10u4 [2844 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libqt5widgets5 amd64 5.11.3+dfsg1-1+deb10u4 [2260 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libqt5svg5 amd64 5.11.3-2 [131 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-common all 2.38.1+dfsg-1 [316 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-0 amd64 2.38.1+dfsg-1 [177 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 gtk-update-icon-cache amd64 3.24.5-1 [81.7 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 librsvg2-2 amd64 2.44.10-2.1 [1280 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 librsvg2-common amd64 2.44.10-2.1 [23.3 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 adwaita-icon-theme all 3.30.1-1 [11.7 MB] Get: 150 http://deb.debian.org/debian buster/main amd64 aglfn all 1.7-3 [29.2 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-3 [154 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 bamtools amd64 2.5.1+dfsg-3 [171 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 binfmt-support amd64 2.2.0-2 [70.0 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 bwa amd64 0.7.17-3 [195 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u4 [324 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u3 [1159 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.12+7-2~deb10u1 [37.2 MB] Get: 180 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 libfilesys-df-perl amd64 0.92-6+b4 [12.6 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 fastjar amd64 2:0.98-6+b1 [81.0 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 jarwrapper all 0.72.9 [21.0 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 libapache-pom-java all 18-1 [4676 B] Get: 186 http://deb.debian.org/debian buster/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 libcommons-compress-java all 1.18-2+deb10u1 [531 kB] Get: 188 http://deb.debian.org/debian buster/main amd64 libfastutil-java all 8.2.2-1 [15.4 MB] Get: 189 http://deb.debian.org/debian buster/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 190 http://deb.debian.org/debian buster/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 libguava-java all 19.0-1 [2028 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 jaligner all 1.0+dfsg-6 [131 kB] Get: 193 http://deb.debian.org/debian buster/main amd64 libssw-java amd64 1.1-2 [13.8 kB] Get: 194 http://deb.debian.org/debian buster/main amd64 mhap all 2.1.3+dfsg-2 [160 kB] Get: 195 http://deb.debian.org/debian buster/main amd64 gnuplot-data all 5.2.6+dfsg1-1+deb10u1 [180 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get: 198 http://deb.debian.org/debian buster/main amd64 liblua5.3-0 amd64 5.3.3-1.1 [120 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 libqt5printsupport5 amd64 5.11.3+dfsg1-1+deb10u4 [217 kB] Get: 200 http://deb.debian.org/debian buster/main amd64 libwxbase3.0-0v5 amd64 3.0.4+dfsg-8 [1057 kB] Get: 201 http://deb.debian.org/debian buster/main amd64 libgtk2.0-common all 2.24.32-3 [2698 kB] Get: 202 http://deb.debian.org/debian buster/main amd64 libatk1.0-data all 2.30.0-2 [145 kB] Get: 203 http://deb.debian.org/debian buster/main amd64 libatk1.0-0 amd64 2.30.0-2 [50.6 kB] Get: 204 http://deb.debian.org/debian buster/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get: 205 http://deb.debian.org/debian buster/main amd64 libxcursor1 amd64 1:1.1.15-2 [36.6 kB] Get: 206 http://deb.debian.org/debian buster/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get: 207 http://deb.debian.org/debian buster/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get: 208 http://deb.debian.org/debian buster/main amd64 libgtk2.0-0 amd64 2.24.32-3 [1809 kB] Get: 209 http://deb.debian.org/debian buster/main amd64 libnotify4 amd64 0.7.7-4 [29.0 kB] Get: 210 http://deb.debian.org/debian buster/main amd64 libwxgtk3.0-0v5 amd64 3.0.4+dfsg-8 [4398 kB] Get: 211 http://deb.debian.org/debian buster/main amd64 gnuplot-qt amd64 5.2.6+dfsg1-1+deb10u1 [1131 kB] Get: 212 http://deb.debian.org/debian buster/main amd64 gnuplot all 5.2.6+dfsg1-1+deb10u1 [128 kB] Get: 213 http://deb.debian.org/debian buster/main amd64 canu amd64 1.8+dfsg-2 [2019 kB] Get: 214 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 215 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 216 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 217 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 218 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 219 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 220 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 221 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 222 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 223 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 224 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 225 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 226 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 227 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 228 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 229 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 230 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 231 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 232 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 233 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 234 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 235 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 236 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get: 237 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get: 238 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get: 239 http://deb.debian.org/debian buster/main amd64 samtools amd64 1.9-4 [443 kB] Get: 240 http://deb.debian.org/debian buster/main amd64 fastaq all 3.17.0-2 [47.8 kB] Get: 241 http://deb.debian.org/debian buster/main amd64 libhat-trie0 amd64 0.1.2-2 [11.8 kB] Get: 242 http://deb.debian.org/debian buster/main amd64 libnlopt0 amd64 2.4.2+dfsg-8+b1 [165 kB] Get: 243 http://deb.debian.org/debian buster/main amd64 libssw0 amd64 1.1-2 [16.5 kB] Get: 244 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get: 245 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get: 246 http://deb.debian.org/debian buster/main amd64 mummer amd64 3.23+dfsg-4 [809 kB] Get: 247 http://deb.debian.org/debian buster/main amd64 prodigal amd64 1:2.6.3-4 [695 kB] Get: 248 http://deb.debian.org/debian buster/main amd64 python-joblib all 0.13.0-2 [190 kB] Get: 249 http://deb.debian.org/debian buster/main amd64 python-yaml amd64 3.13-2 [127 kB] Get: 250 http://deb.debian.org/debian buster/main amd64 python3-all amd64 3.7.3-1 [1068 B] Get: 251 http://deb.debian.org/debian buster/main amd64 python3-et-xmlfile all 1.0.1-2 [9026 B] Get: 252 http://deb.debian.org/debian buster/main amd64 python3-jdcal all 1.0-1.2 [7488 B] Get: 253 http://deb.debian.org/debian buster/main amd64 python3-lxml amd64 4.3.2-1+deb10u3 [1162 kB] Get: 254 http://deb.debian.org/debian buster/main amd64 python3-nose all 1.3.7-4 [132 kB] Get: 255 http://deb.debian.org/debian buster/main amd64 python3-openpyxl all 2.4.9-1 [220 kB] Get: 256 http://deb.debian.org/debian buster/main amd64 python3-pymummer all 0.10.3-2 [9268 B] Get: 257 http://deb.debian.org/debian buster/main amd64 python3-pysam amd64 0.15.2+ds-2 [1661 kB] Get: 258 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get: 259 http://deb.debian.org/debian buster/main amd64 spades amd64 3.13.0+dfsg2-2 [4755 kB] Fetched 173 MB in 2s (81.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_amd64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_amd64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u7_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../14-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:amd64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython2-stdlib:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20691 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_amd64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Setting up readline-common (7.0-5) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20714 files and directories currently installed.) Preparing to unpack .../00-gawk_1%3a4.2.1+dfsg-1_amd64.deb ... Unpacking gawk (1:4.2.1+dfsg-1) ... Selecting previously unselected package libdouble-conversion1:amd64. Preparing to unpack .../01-libdouble-conversion1_3.1.0-3_amd64.deb ... Unpacking libdouble-conversion1:amd64 (3.1.0-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../02-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../03-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libpcre2-16-0:amd64. Preparing to unpack .../04-libpcre2-16-0_10.32-5_amd64.deb ... Unpacking libpcre2-16-0:amd64 (10.32-5) ... Selecting previously unselected package libqt5core5a:amd64. Preparing to unpack .../05-libqt5core5a_5.11.3+dfsg1-1+deb10u4_amd64.deb ... Unpacking libqt5core5a:amd64 (5.11.3+dfsg1-1+deb10u4) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../06-libpng16-16_1.6.36-6_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-6) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../07-libfreetype6_2.9.1-3+deb10u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-3+deb10u2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../09-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../10-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../11-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../12-libfontconfig1_2.13.1-2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../13-fontconfig_2.13.1-2_amd64.deb ... Unpacking fontconfig (2.13.1-2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../14-libdrm-common_2.4.97-1_all.deb ... Unpacking libdrm-common (2.4.97-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../15-libdrm2_2.4.97-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.97-1) ... Selecting previously unselected package libglvnd0:amd64. Preparing to unpack .../16-libglvnd0_1.1.0-1_amd64.deb ... Unpacking libglvnd0:amd64 (1.1.0-1) ... Selecting previously unselected package libwayland-server0:amd64. Preparing to unpack .../17-libwayland-server0_1.16.0-1_amd64.deb ... Unpacking libwayland-server0:amd64 (1.16.0-1) ... Selecting previously unselected package libgbm1:amd64. Preparing to unpack .../18-libgbm1_18.3.6-2+deb10u1_amd64.deb ... Unpacking libgbm1:amd64 (18.3.6-2+deb10u1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../19-libglapi-mesa_18.3.6-2+deb10u1_amd64.deb ... Unpacking libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Selecting previously unselected package libwayland-client0:amd64. Preparing to unpack .../20-libwayland-client0_1.16.0-1_amd64.deb ... Unpacking libwayland-client0:amd64 (1.16.0-1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../21-libx11-xcb1_2%3a1.6.7-1+deb10u2_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../22-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../23-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../24-libxcb1_1.13.1-2_amd64.deb ... Unpacking libxcb1:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../25-libxcb-dri2-0_1.13.1-2_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../26-libxcb-dri3-0_1.13.1-2_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../27-libxcb-present0_1.13.1-2_amd64.deb ... Unpacking libxcb-present0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../28-libxcb-sync1_1.13.1-2_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../29-libxcb-xfixes0_1.13.1-2_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.13.1-2) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../30-libxshmfence1_1.3-1_amd64.deb ... Unpacking libxshmfence1:amd64 (1.3-1) ... Selecting previously unselected package libegl-mesa0:amd64. Preparing to unpack .../31-libegl-mesa0_18.3.6-2+deb10u1_amd64.deb ... Unpacking libegl-mesa0:amd64 (18.3.6-2+deb10u1) ... Selecting previously unselected package libegl1:amd64. Preparing to unpack .../32-libegl1_1.1.0-1_amd64.deb ... Unpacking libegl1:amd64 (1.1.0-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../33-libx11-data_2%3a1.6.7-1+deb10u2_all.deb ... Unpacking libx11-data (2:1.6.7-1+deb10u2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../34-libx11-6_2%3a1.6.7-1+deb10u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../35-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../36-libxcb-glx0_1.13.1-2_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.13.1-2) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../37-libxfixes3_1%3a5.0.3-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.3-1) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../38-libxdamage1_1%3a1.1.4-3+b3_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-3+b3) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../39-libxxf86vm1_1%3a1.1.4-1+b2_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../40-libdrm-amdgpu1_2.4.97-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.97-1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../41-libpciaccess0_0.14-1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.14-1) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../42-libdrm-intel1_2.4.97-1_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.97-1) ... Selecting previously unselected package libdrm-nouveau2:amd64. Preparing to unpack .../43-libdrm-nouveau2_2.4.97-1_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.97-1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../44-libdrm-radeon1_2.4.97-1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.97-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../45-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../46-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libllvm7:amd64. Preparing to unpack .../47-libllvm7_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../48-libsensors-config_1%3a3.5.0-3_all.deb ... Unpacking libsensors-config (1:3.5.0-3) ... Selecting previously unselected package libsensors5:amd64. Preparing to unpack .../49-libsensors5_1%3a3.5.0-3_amd64.deb ... Unpacking libsensors5:amd64 (1:3.5.0-3) ... Selecting previously unselected package libgl1-mesa-dri:amd64. Preparing to unpack .../50-libgl1-mesa-dri_18.3.6-2+deb10u1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Selecting previously unselected package libglx-mesa0:amd64. Preparing to unpack .../51-libglx-mesa0_18.3.6-2+deb10u1_amd64.deb ... Unpacking libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Selecting previously unselected package libglx0:amd64. Preparing to unpack .../52-libglx0_1.1.0-1_amd64.deb ... Unpacking libglx0:amd64 (1.1.0-1) ... Selecting previously unselected package libgl1:amd64. Preparing to unpack .../53-libgl1_1.1.0-1_amd64.deb ... Unpacking libgl1:amd64 (1.1.0-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../54-libgraphite2-3_1.3.13-7_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-7) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../55-libharfbuzz0b_2.3.1-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.3.1-1) ... Selecting previously unselected package lsb-base. Preparing to unpack .../56-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package x11-common. Preparing to unpack .../57-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../58-libice6_2%3a1.0.9-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-2) ... Selecting previously unselected package libevdev2:amd64. Preparing to unpack .../59-libevdev2_1.6.0+dfsg-1_amd64.deb ... Unpacking libevdev2:amd64 (1.6.0+dfsg-1) ... Selecting previously unselected package libmtdev1:amd64. Preparing to unpack .../60-libmtdev1_1.1.5-1+b1_amd64.deb ... Unpacking libmtdev1:amd64 (1.1.5-1+b1) ... Selecting previously unselected package libgudev-1.0-0:amd64. Preparing to unpack .../61-libgudev-1.0-0_232-2_amd64.deb ... Unpacking libgudev-1.0-0:amd64 (232-2) ... Selecting previously unselected package libwacom-common. Preparing to unpack .../62-libwacom-common_0.32-1_all.deb ... Unpacking libwacom-common (0.32-1) ... Selecting previously unselected package libwacom2:amd64. Preparing to unpack .../63-libwacom2_0.32-1_amd64.deb ... Unpacking libwacom2:amd64 (0.32-1) ... Selecting previously unselected package libinput-bin. Preparing to unpack .../64-libinput-bin_1.12.6-2+deb10u1_amd64.deb ... Unpacking libinput-bin (1.12.6-2+deb10u1) ... Selecting previously unselected package libinput10:amd64. Preparing to unpack .../65-libinput10_1.12.6-2+deb10u1_amd64.deb ... Unpacking libinput10:amd64 (1.12.6-2+deb10u1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../66-libjpeg62-turbo_1%3a1.5.2-2+deb10u1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../67-libdbus-1-3_1.12.20-0+deb10u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Selecting previously unselected package libqt5dbus5:amd64. Preparing to unpack .../68-libqt5dbus5_5.11.3+dfsg1-1+deb10u4_amd64.deb ... Unpacking libqt5dbus5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Selecting previously unselected package libqt5network5:amd64. Preparing to unpack .../69-libqt5network5_5.11.3+dfsg1-1+deb10u4_amd64.deb ... Unpacking libqt5network5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../70-libsm6_2%3a1.2.3-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1) ... Selecting previously unselected package libxcb-icccm4:amd64. Preparing to unpack .../71-libxcb-icccm4_0.4.1-1.1_amd64.deb ... Unpacking libxcb-icccm4:amd64 (0.4.1-1.1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../72-libxcb-shm0_1.13.1-2_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-util0:amd64. Preparing to unpack .../73-libxcb-util0_0.3.8-3+b2_amd64.deb ... Unpacking libxcb-util0:amd64 (0.3.8-3+b2) ... Selecting previously unselected package libxcb-image0:amd64. Preparing to unpack .../74-libxcb-image0_0.4.0-1+b2_amd64.deb ... Unpacking libxcb-image0:amd64 (0.4.0-1+b2) ... Selecting previously unselected package libxcb-keysyms1:amd64. Preparing to unpack .../75-libxcb-keysyms1_0.4.0-1+b2_amd64.deb ... Unpacking libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Selecting previously unselected package libxcb-randr0:amd64. Preparing to unpack .../76-libxcb-randr0_1.13.1-2_amd64.deb ... Unpacking libxcb-randr0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../77-libxcb-render0_1.13.1-2_amd64.deb ... Unpacking libxcb-render0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-render-util0:amd64. Preparing to unpack .../78-libxcb-render-util0_0.3.9-1+b1_amd64.deb ... Unpacking libxcb-render-util0:amd64 (0.3.9-1+b1) ... Selecting previously unselected package libxcb-shape0:amd64. Preparing to unpack .../79-libxcb-shape0_1.13.1-2_amd64.deb ... Unpacking libxcb-shape0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-xinerama0:amd64. Preparing to unpack .../80-libxcb-xinerama0_1.13.1-2_amd64.deb ... Unpacking libxcb-xinerama0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-xkb1:amd64. Preparing to unpack .../81-libxcb-xkb1_1.13.1-2_amd64.deb ... Unpacking libxcb-xkb1:amd64 (1.13.1-2) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../82-libxi6_2%3a1.7.9-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.9-1) ... Selecting previously unselected package xkb-data. Preparing to unpack .../83-xkb-data_2.26-2_all.deb ... Unpacking xkb-data (2.26-2) ... Selecting previously unselected package libxkbcommon0:amd64. Preparing to unpack .../84-libxkbcommon0_0.8.2-1_amd64.deb ... Unpacking libxkbcommon0:amd64 (0.8.2-1) ... Selecting previously unselected package libxkbcommon-x11-0:amd64. Preparing to unpack .../85-libxkbcommon-x11-0_0.8.2-1_amd64.deb ... Unpacking libxkbcommon-x11-0:amd64 (0.8.2-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../86-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libqt5gui5:amd64. Preparing to unpack .../87-libqt5gui5_5.11.3+dfsg1-1+deb10u4_amd64.deb ... Unpacking libqt5gui5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Selecting previously unselected package libqt5widgets5:amd64. Preparing to unpack .../88-libqt5widgets5_5.11.3+dfsg1-1+deb10u4_amd64.deb ... Unpacking libqt5widgets5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Selecting previously unselected package libqt5svg5:amd64. Preparing to unpack .../89-libqt5svg5_5.11.3-2_amd64.deb ... Unpacking libqt5svg5:amd64 (5.11.3-2) ... Selecting previously unselected package libpython3.7-minimal:amd64. Preparing to unpack .../90-libpython3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../91-python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22902 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23314 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../002-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../008-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../009-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../010-libwebp6_0.6.1-2+deb10u1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2+deb10u1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../011-libtiff5_4.1.0+git191117-2~deb10u2_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../012-libxml2_2.9.4+dfsg1-7+deb10u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../013-shared-mime-info_1.10-1_amd64.deb ... Unpacking shared-mime-info (1.10-1) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../014-libgdk-pixbuf2.0-common_2.38.1+dfsg-1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Selecting previously unselected package libgdk-pixbuf2.0-0:amd64. Preparing to unpack .../015-libgdk-pixbuf2.0-0_2.38.1+dfsg-1_amd64.deb ... Unpacking libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../016-gtk-update-icon-cache_3.24.5-1_amd64.deb ... No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. Unpacking gtk-update-icon-cache (3.24.5-1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../017-libpixman-1-0_0.36.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.36.0-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../018-libcairo2_1.16.0-4+deb10u1_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-4+deb10u1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../019-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../020-libfribidi0_1.0.5-3.1+deb10u1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.5-3.1+deb10u1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../021-libthai-data_0.1.28-2_all.deb ... Unpacking libthai-data (0.1.28-2) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../022-libdatrie1_0.2.12-2_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.12-2) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../023-libthai0_0.1.28-2_amd64.deb ... Unpacking libthai0:amd64 (0.1.28-2) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../024-libpango-1.0-0_1.42.4-8~deb10u1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../025-libpangoft2-1.0-0_1.42.4-8~deb10u1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../026-libpangocairo-1.0-0_1.42.4-8~deb10u1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Selecting previously unselected package librsvg2-2:amd64. Preparing to unpack .../027-librsvg2-2_2.44.10-2.1_amd64.deb ... Unpacking librsvg2-2:amd64 (2.44.10-2.1) ... Selecting previously unselected package librsvg2-common:amd64. Preparing to unpack .../028-librsvg2-common_2.44.10-2.1_amd64.deb ... Unpacking librsvg2-common:amd64 (2.44.10-2.1) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../029-adwaita-icon-theme_3.30.1-1_all.deb ... Unpacking adwaita-icon-theme (3.30.1-1) ... Selecting previously unselected package aglfn. Preparing to unpack .../030-aglfn_1.7-3_all.deb ... Unpacking aglfn (1.7-3) ... Selecting previously unselected package m4. Preparing to unpack .../031-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../032-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../033-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../034-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../035-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libbamtools2.5.1:amd64. Preparing to unpack .../036-libbamtools2.5.1_2.5.1+dfsg-3_amd64.deb ... Unpacking libbamtools2.5.1:amd64 (2.5.1+dfsg-3) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../037-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package bamtools. Preparing to unpack .../038-bamtools_2.5.1+dfsg-3_amd64.deb ... Unpacking bamtools (2.5.1+dfsg-3) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../039-binfmt-support_2.2.0-2_amd64.deb ... Unpacking binfmt-support (2.2.0-2) ... Selecting previously unselected package bwa. Preparing to unpack .../040-bwa_0.7.17-3_amd64.deb ... Unpacking bwa (0.7.17-3) ... Selecting previously unselected package openssl. Preparing to unpack .../041-openssl_1.1.1d-0+deb10u7_amd64.deb ... Unpacking openssl (1.1.1d-0+deb10u7) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../042-ca-certificates_20200601~deb10u2_all.deb ... Unpacking ca-certificates (20200601~deb10u2) ... Selecting previously unselected package java-common. Preparing to unpack .../043-java-common_0.71_all.deb ... Unpacking java-common (0.71) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../044-libavahi-common-data_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../045-libavahi-common3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../046-libavahi-client3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../047-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../048-libkrb5support0_1.17-3+deb10u3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../049-libk5crypto3_1.17-3+deb10u3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../050-libkrb5-3_1.17-3+deb10u3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../051-libgssapi-krb5-2_1.17-3+deb10u3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../052-libcups2_2.2.10-6+deb10u4_amd64.deb ... Unpacking libcups2:amd64 (2.2.10-6+deb10u4) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../053-liblcms2-2_2.9-3_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-3) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../054-libnspr4_2%3a4.20-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.20-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../055-libnss3_2%3a3.42.1-1+deb10u3_amd64.deb ... Unpacking libnss3:amd64 (2:3.42.1-1+deb10u3) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../056-libasound2-data_1.1.8-1_all.deb ... Unpacking libasound2-data (1.1.8-1) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../057-libasound2_1.1.8-1_amd64.deb ... Unpacking libasound2:amd64 (1.1.8-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../058-libpcsclite1_1.8.24-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.24-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../059-openjdk-11-jre-headless_11.0.12+7-2~deb10u1_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.12+7-2~deb10u1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../060-default-jre-headless_2%3a1.11-71_amd64.deb ... Unpacking default-jre-headless (2:1.11-71) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../061-ca-certificates-java_20190405_all.deb ... Unpacking ca-certificates-java (20190405) ... Selecting previously unselected package libfilesys-df-perl. Preparing to unpack .../062-libfilesys-df-perl_0.92-6+b4_amd64.deb ... Unpacking libfilesys-df-perl (0.92-6+b4) ... Selecting previously unselected package fastjar. Preparing to unpack .../063-fastjar_2%3a0.98-6+b1_amd64.deb ... Unpacking fastjar (2:0.98-6+b1) ... Selecting previously unselected package jarwrapper. Preparing to unpack .../064-jarwrapper_0.72.9_all.deb ... Unpacking jarwrapper (0.72.9) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../065-libapache-pom-java_18-1_all.deb ... Unpacking libapache-pom-java (18-1) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../066-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../067-libcommons-compress-java_1.18-2+deb10u1_all.deb ... Unpacking libcommons-compress-java (1.18-2+deb10u1) ... Selecting previously unselected package libfastutil-java. Preparing to unpack .../068-libfastutil-java_8.2.2-1_all.deb ... Unpacking libfastutil-java (8.2.2-1) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../069-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../070-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../071-libguava-java_19.0-1_all.deb ... Unpacking libguava-java (19.0-1) ... Selecting previously unselected package jaligner. Preparing to unpack .../072-jaligner_1.0+dfsg-6_all.deb ... Unpacking jaligner (1.0+dfsg-6) ... Selecting previously unselected package libssw-java. Preparing to unpack .../073-libssw-java_1.1-2_amd64.deb ... Unpacking libssw-java (1.1-2) ... Selecting previously unselected package mhap. Preparing to unpack .../074-mhap_2.1.3+dfsg-2_all.deb ... Unpacking mhap (2.1.3+dfsg-2) ... Selecting previously unselected package gnuplot-data. Preparing to unpack .../075-gnuplot-data_5.2.6+dfsg1-1+deb10u1_all.deb ... Unpacking gnuplot-data (5.2.6+dfsg1-1+deb10u1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../076-libxpm4_1%3a3.5.12-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1) ... Selecting previously unselected package libgd3:amd64. Preparing to unpack .../077-libgd3_2.2.5-5.2_amd64.deb ... Unpacking libgd3:amd64 (2.2.5-5.2) ... Selecting previously unselected package liblua5.3-0:amd64. Preparing to unpack .../078-liblua5.3-0_5.3.3-1.1_amd64.deb ... Unpacking liblua5.3-0:amd64 (5.3.3-1.1) ... Selecting previously unselected package libqt5printsupport5:amd64. Preparing to unpack .../079-libqt5printsupport5_5.11.3+dfsg1-1+deb10u4_amd64.deb ... Unpacking libqt5printsupport5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Selecting previously unselected package libwxbase3.0-0v5:amd64. Preparing to unpack .../080-libwxbase3.0-0v5_3.0.4+dfsg-8_amd64.deb ... Unpacking libwxbase3.0-0v5:amd64 (3.0.4+dfsg-8) ... Selecting previously unselected package libgtk2.0-common. Preparing to unpack .../081-libgtk2.0-common_2.24.32-3_all.deb ... Unpacking libgtk2.0-common (2.24.32-3) ... Selecting previously unselected package libatk1.0-data. Preparing to unpack .../082-libatk1.0-data_2.30.0-2_all.deb ... Unpacking libatk1.0-data (2.30.0-2) ... Selecting previously unselected package libatk1.0-0:amd64. Preparing to unpack .../083-libatk1.0-0_2.30.0-2_amd64.deb ... Unpacking libatk1.0-0:amd64 (2.30.0-2) ... Selecting previously unselected package libxcomposite1:amd64. Preparing to unpack .../084-libxcomposite1_1%3a0.4.4-2_amd64.deb ... Unpacking libxcomposite1:amd64 (1:0.4.4-2) ... Selecting previously unselected package libxcursor1:amd64. Preparing to unpack .../085-libxcursor1_1%3a1.1.15-2_amd64.deb ... Unpacking libxcursor1:amd64 (1:1.1.15-2) ... Selecting previously unselected package libxinerama1:amd64. Preparing to unpack .../086-libxinerama1_2%3a1.1.4-2_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.4-2) ... Selecting previously unselected package libxrandr2:amd64. Preparing to unpack .../087-libxrandr2_2%3a1.5.1-1_amd64.deb ... Unpacking libxrandr2:amd64 (2:1.5.1-1) ... Selecting previously unselected package libgtk2.0-0:amd64. Preparing to unpack .../088-libgtk2.0-0_2.24.32-3_amd64.deb ... Unpacking libgtk2.0-0:amd64 (2.24.32-3) ... Selecting previously unselected package libnotify4:amd64. Preparing to unpack .../089-libnotify4_0.7.7-4_amd64.deb ... Unpacking libnotify4:amd64 (0.7.7-4) ... Selecting previously unselected package libwxgtk3.0-0v5:amd64. Preparing to unpack .../090-libwxgtk3.0-0v5_3.0.4+dfsg-8_amd64.deb ... Unpacking libwxgtk3.0-0v5:amd64 (3.0.4+dfsg-8) ... Selecting previously unselected package gnuplot-qt. Preparing to unpack .../091-gnuplot-qt_5.2.6+dfsg1-1+deb10u1_amd64.deb ... Unpacking gnuplot-qt (5.2.6+dfsg1-1+deb10u1) ... Selecting previously unselected package gnuplot. Preparing to unpack .../092-gnuplot_5.2.6+dfsg1-1+deb10u1_all.deb ... Unpacking gnuplot (5.2.6+dfsg1-1+deb10u1) ... Selecting previously unselected package canu. Preparing to unpack .../093-canu_1.8+dfsg-2_amd64.deb ... Unpacking canu (1.8+dfsg-2) ... Selecting previously unselected package libtool. Preparing to unpack .../094-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../095-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../096-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../097-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../098-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package dwz. Preparing to unpack .../099-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../100-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../101-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../102-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../103-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../104-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../105-python3-distutils_3.7.3-1_all.deb ... Unpacking python3-distutils (3.7.3-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../106-dh-python_3.20190308_all.deb ... Unpacking dh-python (3.20190308) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../107-python3-pkg-resources_40.8.0-1_all.deb ... Unpacking python3-pkg-resources (40.8.0-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../108-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../109-libsasl2-2_2.1.27+dfsg-1+deb10u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../110-libldap-common_2.4.47+dfsg-3+deb10u6_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3+deb10u6) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../111-libldap-2.4-2_2.4.47+dfsg-3+deb10u6_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../112-libnghttp2-14_1.36.0-2+deb10u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../113-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../114-librtmp1_2.4+20151223.gitfa8646d.1-2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../115-libssh2-1_1.8.0-2.1_amd64.deb ... Unpacking libssh2-1:amd64 (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../116-libcurl3-gnutls_7.64.0-4+deb10u2_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../117-libdeflate0_1.2-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.2-1) ... Selecting previously unselected package libhts2:amd64. Preparing to unpack .../118-libhts2_1.9-12~deb10u1_amd64.deb ... Unpacking libhts2:amd64 (1.9-12~deb10u1) ... Selecting previously unselected package samtools. Preparing to unpack .../119-samtools_1.9-4_amd64.deb ... Unpacking samtools (1.9-4) ... Selecting previously unselected package fastaq. Preparing to unpack .../120-fastaq_3.17.0-2_all.deb ... Unpacking fastaq (3.17.0-2) ... Selecting previously unselected package libhat-trie0:amd64. Preparing to unpack .../121-libhat-trie0_0.1.2-2_amd64.deb ... Unpacking libhat-trie0:amd64 (0.1.2-2) ... Selecting previously unselected package libnlopt0:amd64. Preparing to unpack .../122-libnlopt0_2.4.2+dfsg-8+b1_amd64.deb ... Unpacking libnlopt0:amd64 (2.4.2+dfsg-8+b1) ... Selecting previously unselected package libssw0:amd64. Preparing to unpack .../123-libssw0_1.1-2_amd64.deb ... Unpacking libssw0:amd64 (1.1-2) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../124-libxslt1.1_1.1.32-2.2~deb10u1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../125-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package mummer. Preparing to unpack .../126-mummer_3.23+dfsg-4_amd64.deb ... Unpacking mummer (3.23+dfsg-4) ... Selecting previously unselected package prodigal. Preparing to unpack .../127-prodigal_1%3a2.6.3-4_amd64.deb ... Unpacking prodigal (1:2.6.3-4) ... Selecting previously unselected package python-joblib. Preparing to unpack .../128-python-joblib_0.13.0-2_all.deb ... Unpacking python-joblib (0.13.0-2) ... Selecting previously unselected package python-yaml. Preparing to unpack .../129-python-yaml_3.13-2_amd64.deb ... Unpacking python-yaml (3.13-2) ... Selecting previously unselected package python3-all. Preparing to unpack .../130-python3-all_3.7.3-1_amd64.deb ... Unpacking python3-all (3.7.3-1) ... Selecting previously unselected package python3-et-xmlfile. Preparing to unpack .../131-python3-et-xmlfile_1.0.1-2_all.deb ... Unpacking python3-et-xmlfile (1.0.1-2) ... Selecting previously unselected package python3-jdcal. Preparing to unpack .../132-python3-jdcal_1.0-1.2_all.deb ... Unpacking python3-jdcal (1.0-1.2) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../133-python3-lxml_4.3.2-1+deb10u3_amd64.deb ... Unpacking python3-lxml:amd64 (4.3.2-1+deb10u3) ... Selecting previously unselected package python3-nose. Preparing to unpack .../134-python3-nose_1.3.7-4_all.deb ... Unpacking python3-nose (1.3.7-4) ... Selecting previously unselected package python3-openpyxl. Preparing to unpack .../135-python3-openpyxl_2.4.9-1_all.deb ... Unpacking python3-openpyxl (2.4.9-1) ... Selecting previously unselected package python3-pymummer. Preparing to unpack .../136-python3-pymummer_0.10.3-2_all.deb ... Unpacking python3-pymummer (0.10.3-2) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../137-python3-pysam_0.15.2+ds-2_amd64.deb ... Unpacking python3-pysam (0.15.2+ds-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../138-python3-setuptools_40.8.0-1_all.deb ... Unpacking python3-setuptools (40.8.0-1) ... Selecting previously unselected package spades. Preparing to unpack .../139-spades_3.13.0+dfsg2-2_amd64.deb ... Unpacking spades (3.13.0+dfsg2-2) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up fastjar (2:0.98-6+b1) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libfastutil-java (8.2.2-1) ... Setting up libwayland-server0:amd64 (1.16.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up mime-support (3.62) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.71) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up gawk (1:4.2.1+dfsg-1) ... Setting up prodigal (1:2.6.3-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up bwa (0.7.17-3) ... Setting up libglvnd0:amd64 (1.1.0-1) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libfilesys-df-perl (0.92-6+b4) ... Setting up libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.5.0-3) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libdeflate0:amd64 (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up m4 (1.4.18-2) ... Setting up xkb-data (2.26-2) ... Setting up libnlopt0:amd64 (2.4.2+dfsg-8+b1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libpcre2-16-0:amd64 (10.32-5) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libssw-java (1.1-2) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libasound2-data (1.1.8-1) ... Setting up autotools-dev (20180224.1) ... Setting up libhat-trie0:amd64 (0.1.2-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libnspr4:amd64 (2:4.20-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up aglfn (1.7-3) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u1) ... Setting up libbamtools2.5.1:amd64 (2.5.1+dfsg-3) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up binfmt-support (2.2.0-2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:amd64 (1.8.24-1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libmtdev1:amd64 (1.1.5-1+b1) ... Setting up autoconf (2.69-11) ... Setting up libatk1.0-data (2.30.0-2) ... Setting up sensible-utils (0.0.12) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up liblua5.3-0:amd64 (5.3.3-1.1) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libasound2:amd64 (1.1.8-1) ... Setting up mummer (3.23+dfsg-4) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up libwxbase3.0-0v5:amd64 (3.0.4+dfsg-8) ... Setting up libgtk2.0-common (2.24.32-3) ... Setting up libatk1.0-0:amd64 (2.30.0-2) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up openssl (1.1.1d-0+deb10u7) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libssw0:amd64 (1.1-2) ... Setting up libevdev2:amd64 (1.6.0+dfsg-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libdouble-conversion1:amd64 (3.1.0-3) ... Setting up libgudev-1.0-0:amd64 (232-2) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libwacom-common (0.32-1) ... Setting up libxkbcommon0:amd64 (0.8.2-1) ... Setting up libwayland-client0:amd64 (1.16.0-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gnuplot-data (5.2.6+dfsg1-1+deb10u1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libxcb-xfixes0:amd64 (1.13.1-2) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up jarwrapper (0.72.9) ... Setting up libtool (2.4.6-9) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.13.1-2) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u3) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up libxcb-util0:amd64 (0.3.8-3+b2) ... Setting up python2 (2.7.16-1) ... Setting up libxcb-xkb1:amd64 (1.13.1-2) ... Setting up libxcb-image0:amd64 (0.4.0-1+b2) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libxcb-xinerama0:amd64 (1.13.1-2) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up libguava-java (19.0-1) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:amd64 (0.8.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libqt5core5a:amd64 (5.11.3+dfsg1-1+deb10u4) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libqt5dbus5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Setting up bamtools (2.5.1+dfsg-3) ... Setting up libxcb-randr0:amd64 (1.13.1-2) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libwacom2:amd64 (0.32-1) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up python (2.7.16-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.18-2+deb10u1) ... Setting up libgbm1:amd64 (18.3.6-2+deb10u1) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libqt5network5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.12.6-2+deb10u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libegl-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up python-joblib (0.13.0-2) ... Setting up libcups2:amd64 (2.2.10-6+deb10u4) ... Setting up python3-lxml:amd64 (4.3.2-1+deb10u3) ... Setting up libegl1:amd64 (1.1.0-1) ... Setting up python3-et-xmlfile (1.0.1-2) ... Setting up python-yaml (3.13-2) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up libinput10:amd64 (1.12.6-2+deb10u1) ... Setting up gtk-update-icon-cache (3.24.5-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up python3-setuptools (40.8.0-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up python3-jdcal (1.0-1.2) ... Setting up po-debconf (1.0.21) ... Setting up libxcursor1:amd64 (1:1.1.15-2) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python3-all (3.7.3-1) ... Setting up python3-nose (1.3.7-4) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up samtools (1.9-4) ... Setting up python3-openpyxl (2.4.9-1) ... Setting up libnotify4:amd64 (0.7.7-4) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up spades (3.13.0+dfsg2-2) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up python3-pysam (0.15.2+ds-2) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up fastaq (3.17.0-2) ... Setting up python3-pymummer (0.10.3-2) ... Setting up librsvg2-2:amd64 (2.44.10-2.1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up librsvg2-common:amd64 (2.44.10-2.1) ... Setting up libqt5gui5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Setting up libqt5widgets5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Setting up libqt5printsupport5:amd64 (5.11.3+dfsg1-1+deb10u4) ... Setting up adwaita-icon-theme (3.30.1-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:amd64 (2.24.32-3) ... Setting up libqt5svg5:amd64 (5.11.3-2) ... Setting up libwxgtk3.0-0v5:amd64 (3.0.4+dfsg-8) ... Setting up gnuplot-qt (5.2.6+dfsg1-1+deb10u1) ... update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up gnuplot (5.2.6+dfsg1-1+deb10u1) ... Setting up dh-autoreconf (19) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up default-jre-headless (2:1.11-71) ... Setting up debhelper (12.1.1) ... Setting up jaligner (1.0+dfsg-6) ... Setting up mhap (2.1.3+dfsg-2) ... Setting up canu (1.8+dfsg-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up openjdk-11-jre-headless:amd64 (11.0.12+7-2~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/circlator-1.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../circlator_1.5.5-3_source.changes dpkg-buildpackage: info: source package circlator dpkg-buildpackage: info: source version 1.5.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/circlator-1.5.5/.pybuild/cpython3_3.7/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/external_progs.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/versions.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/start_fixer.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/program.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/minimus2.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/merge.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/mapping.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/dnaa.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/common.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/clean.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/bamfilter.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/assembly.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/assemble.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator copying circlator/__init__.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator creating /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/version.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/test.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/progcheck.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/minimus2.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/merge.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/mapreads.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/get_dnaa.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/fixstart.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/clean.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/bam2reads.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/assemble.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/all.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks copying circlator/tasks/__init__.py -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks creating /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data copying circlator/data/test_ref.fa.fai -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data copying circlator/data/test_ref.fa -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data copying circlator/data/test_reads.fq.gz -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data copying circlator/data/test_make_data.sh -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data copying circlator/data/test_for_reads.fa -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data copying circlator/data/test_contigs.fa -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data copying circlator/data/dnaA.fasta -> /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data running build_scripts creating build creating build/scripts-3.7 copying and adjusting scripts/circlator -> build/scripts-3.7 changing mode of build/scripts-3.7/circlator from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/circlator-1.5.5' PYTHONPATH=/build/circlator-1.5.5 nosetests3 -v --where=circlator/tests test _build_spades_kmers ... WARNING: SPAdes version 3.13.0 is being used. It will work, but better results are usually obtained from Circlator using SPAdes version 3.7.1. Although 3.7.1 is not the latest version, we recommend it for Circlator. ok test _make_canu_command ... WARNING: SPAdes version 3.13.0 is being used. It will work, but better results are usually obtained from Circlator using SPAdes version 3.7.1. Although 3.7.1 is not the latest version, we recommend it for Circlator. ok test _make_spades_command ... WARNING: SPAdes version 3.13.0 is being used. It will work, but better results are usually obtained from Circlator using SPAdes version 3.7.1. Although 3.7.1 is not the latest version, we recommend it for Circlator. ok test _rename_canu_contigs ... WARNING: SPAdes version 3.13.0 is being used. It will work, but better results are usually obtained from Circlator using SPAdes version 3.7.1. Although 3.7.1 is not the latest version, we recommend it for Circlator. ok Test _circular_contigs_from_canu_gfa ... ok Test _circular_contigs_from_spades_after_3_6_1 ... ok Test _circular_contigs_from_spades_before_3_6_1 ... ok Test circular_contigs when input is just fasta ... ok Test circular_contigs with spades post 3.6.1 ... ok Test circular_contigs with spades pre 3.6.1 ... ok Test _circular_edges_to_edge_numbers_dict ... ok Test get_contigs ... ok Test _init_file_not_dir ... ok Test _init_post_3_6_1_ok ... ok Test _init_pre_3_6_1_ok ... ok Test _init_raises_error ... ok Test _spades_contigs_paths_to_dict ... ok test _all_reads_from_contig ... ok test _break_reads ... ok test _check_contigs_to_use ... ok test _exclude_region ... ok test _get_all_unmapped_reads ... ok test _get_contigs_to_use ... ok test _get_ref_lengths ... ok test _get_region end ... ok test _get_region start ... ok test run keep unmapped bam has no quality scores ... ok test run keep unmapped bam has no quality scores ... ok test run keep unmapped bam has quality scores ... ok test _clean_contigs ... ok test _collapse_list_of_sets ... ok test _containing_contigs ... ok test _contains ... ok test _expand_containing_using_transitivity ... ok test _get_all_containing ... ok test _get_containing_contigs ... ok test _get_contigs_to_keep ... ok test _get_identical_contigs ... ok test _infinite_recursion ... ok test _load_nucmer_hits ... ok test _longest_contig ... ok test _remove_identical_contigs ... ok test _remove_small_contigs ... ok test _write_log ... ok test check_files_exist ... File not found: "thisisnotafileandshouldcauseanerror" ok test _append_stop_to_seq ... ok test _check_sequence ... ok test _get_uniprot_url ... ok test _header_matches_regex ... ok test _header_to_genus_species ... ok test _reverse_translate ... ok Test bwa version ... ok Test canu version ... ok Test nucmer version ... ok Test prodigal version ... ok Test samtools original version ... ok Test samtools version ... ok Test spades version ... ok test aligned_read_to_read ... ok test bwa_index ... ok test bwa_index_clean ... ok test bwa_mem ... ok test _can_circularise ... ok test _contigs_dict_to_file ... ok test _filter_bridging_contigs ... ok test _get_hit_nearest_ref_end ... ok test _get_hit_nearest_ref_start ... ok test _get_longest_hit_at_qry_end ... ok test _get_longest_hit_at_qry_start ... ok test _get_longest_hit_at_ref_end ... ok test _get_longest_hit_at_ref_start ... ok test _get_longest_hit_by_ref_length ... ok test _get_possible_circular_ref_contigs ... ok test _get_possible_circular_ref_contigs same best hits ... ok test _get_possible_query_bridging_contigs ... ok test_get_spades_circular_nodes (merge_test.TestMerge) ... ok test _has_qry_hit_longer_than ... ok test _hits_hashed_by_query ... ok test _hits_have_same_query ... ok test _hits_have_same_reference ... ok test _index_fasta ... ok test _is_at_qry_end ... ok test _is_at_qry_start ... ok test _is_at_ref_end ... ok test _is_at_ref_start ... ok test _load_nucmer_hits ... ok test _make_circularised_contig 1 ... ok test _make_circularised_contig 2 ... ok test _make_new_contig_from_nucmer_and_spades no hit ... ok test _make_new_contig_from_nucmer_and_spades with hit ... ok test _merge_bridged_contig_pair1 ... ok test _merge_bridged_contig_pair2 ... ok test _merge_bridged_contig_pair3 ... ok test _merge_bridged_contig_pair4 ... ok test _min_qry_hit_length ... ok test _orientation_ok_to_bridge_contigs ... ok test _remove_keys_from_dict_with_nonunique_values ... ok test _write_act_files ... ok test _run_initial_merge ... SKIP: Amos is not installed test _run_minimus2 ... SKIP: Amos is not installed test _run_minimus2_on_each_contig ... SKIP: Amos is not installed test_run_minimus2_on_one_contig that won't circularise ... SKIP: Amos is not installed test_run_minimus2_on_one_contig that will circularise ... SKIP: Amos is not installed test _write_split_contig ... SKIP: Amos is not installed test _find_circular_using_prodigal ... ok Test _find_circular_using_promer ... ok Test init ... ok Test _max_length_from_fasta_file ... ok test _rearrange_contigs ... ok Test _rename_contigs ... ok test run with promer, prodigal, and ignoring a sequence ... ok test run when ignoring all sequences ... ok test run when everthing sorted by promer ... ok Test _write_fasta_plus_circularized_ends ... ok Test _write_renamed_contigs ... ok ---------------------------------------------------------------------- Ran 115 tests in 2.702s OK (SKIP=6) make[1]: Leaving directory '/build/circlator-1.5.5' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/circlator-1.5.5/debian/circlator running install running build running build_py running build_scripts running install_lib creating /build/circlator-1.5.5/debian/circlator/usr creating /build/circlator-1.5.5/debian/circlator/usr/lib creating /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7 creating /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages creating /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator creating /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/data copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data/dnaA.fasta -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/data copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data/test_contigs.fa -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/data copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data/test_for_reads.fa -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/data copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data/test_make_data.sh -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/data copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data/test_reads.fq.gz -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/data copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data/test_ref.fa -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/data copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/data/test_ref.fa.fai -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/data creating /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/__init__.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/all.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/assemble.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/bam2reads.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/clean.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/fixstart.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/get_dnaa.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/mapreads.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/merge.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/minimus2.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/progcheck.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/test.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/tasks/version.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/__init__.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/assemble.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/assembly.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/bamfilter.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/clean.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/common.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/dnaa.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/mapping.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/merge.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/minimus2.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/program.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/start_fixer.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/versions.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator copying /build/circlator-1.5.5/.pybuild/cpython3_3.7/build/circlator/external_progs.py -> /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/__init__.py to __init__.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/all.py to all.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/assemble.py to assemble.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/bam2reads.py to bam2reads.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/clean.py to clean.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/fixstart.py to fixstart.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/get_dnaa.py to get_dnaa.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/mapreads.py to mapreads.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/merge.py to merge.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/minimus2.py to minimus2.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/progcheck.py to progcheck.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/test.py to test.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/tasks/version.py to version.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/__init__.py to __init__.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/assemble.py to assemble.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/assembly.py to assembly.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/bamfilter.py to bamfilter.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/clean.py to clean.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/common.py to common.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/dnaa.py to dnaa.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/mapping.py to mapping.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/merge.py to merge.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/minimus2.py to minimus2.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/program.py to program.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/start_fixer.py to start_fixer.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/versions.py to versions.cpython-37.pyc byte-compiling /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator/external_progs.py to external_progs.cpython-37.pyc running install_egg_info running egg_info creating circlator.egg-info writing circlator.egg-info/PKG-INFO writing dependency_links to circlator.egg-info/dependency_links.txt writing requirements to circlator.egg-info/requires.txt writing top-level names to circlator.egg-info/top_level.txt writing manifest file 'circlator.egg-info/SOURCES.txt' reading manifest file 'circlator.egg-info/SOURCES.txt' writing manifest file 'circlator.egg-info/SOURCES.txt' Copying circlator.egg-info to /build/circlator-1.5.5/debian/circlator/usr/lib/python3.7/dist-packages/circlator-1.5.5.egg-info Skipping SOURCES.txt running install_scripts creating /build/circlator-1.5.5/debian/circlator/usr/bin copying build/scripts-3.7/circlator -> /build/circlator-1.5.5/debian/circlator/usr/bin changing mode of /build/circlator-1.5.5/debian/circlator/usr/bin/circlator to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'circlator' in '../circlator_1.5.5-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../circlator_1.5.5-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/856754 and its subdirectories I: Current time: Mon Jan 2 12:48:31 -12 2023 I: pbuilder-time-stamp: 1672706911