I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 1 13:03:53 -12 2021 I: pbuilder-time-stamp: 1638407033 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dolfin_2018.1.0.post1-16.dsc] I: copying [./dolfin_2018.1.0.post1.orig.tar.gz] I: copying [./dolfin_2018.1.0.post1.orig.tar.gz.asc] I: copying [./dolfin_2018.1.0.post1-16.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 10 20:16:08 2019 -12 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: issuer "dparsons@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dolfin_2018.1.0.post1-16.dsc dpkg-source: info: extracting dolfin in dolfin-2018.1.0.post1 dpkg-source: info: unpacking dolfin_2018.1.0.post1.orig.tar.gz dpkg-source: info: unpacking dolfin_2018.1.0.post1-16.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying conditional-parmetis-in-cholmod.patch dpkg-source: info: applying test_mpi_oversubscribe.patch dpkg-source: info: applying mpi_prefer_mumps_not_superlu_dist.patch dpkg-source: info: applying skip_demo_hyperelasticity_mpi.patch dpkg-source: info: applying unittests_demos_include_dirs.patch dpkg-source: info: applying extra_CXXFLAGS.patch dpkg-source: info: applying PETSc_3.10_SNESTEST_removed.patch dpkg-source: info: applying pytest_fixtures_096217a.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2208619/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f9d5f4325f224d0d9dfb6573865f3eee' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2208619' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.DgB6JwcJqf/pbuilderrc_Uvjm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.DgB6JwcJqf/b1 --logfile b1/build.log dolfin_2018.1.0.post1-16.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 7 09:58 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/2208619/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake (>= 3.5), debhelper (>= 12), dh-python, gfortran, chrpath, libboost-chrono-dev, libboost-dev (>= 1.56), libboost-filesystem-dev, libboost-iostreams-dev, libboost-math-dev, libboost-mpi-dev, libboost-program-options-dev, libboost-serialization-dev, libboost-thread-dev, libboost-timer-dev, libeigen3-dev (>= 3.2.90), libhdf5-mpi-dev, libsuitesparse-dev, libscotch-dev, libxml2-dev, mpi-default-dev, petsc-dev (>= 3.7), slepc-dev (>= 3.7), pybind11-dev (>= 2.2.0), python3-setuptools, python3-petsc4py, python3-slepc4py, pkg-config, python3-all-dev, python3-pkg-resources, python3-ffc (>= 2018.1), python3-ffc (<< 2018.2), python3-dijitso (>= 2018.1), python3-dijitso (<< 2018.2), python3-numpy, python3-ply dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake (>= 3.5); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 12); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.56); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-math-dev; however: Package libboost-math-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-mpi-dev; however: Package libboost-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-timer-dev; however: Package libboost-timer-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev (>= 3.2.90); however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-mpi-dev; however: Package libhdf5-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libsuitesparse-dev; however: Package libsuitesparse-dev is not installed. pbuilder-satisfydepends-dummy depends on libscotch-dev; however: Package libscotch-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on petsc-dev (>= 3.7); however: Package petsc-dev is not installed. pbuilder-satisfydepends-dummy depends on slepc-dev (>= 3.7); however: Package slepc-dev is not installed. pbuilder-satisfydepends-dummy depends on pybind11-dev (>= 2.2.0); however: Package pybind11-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pkg-resources; however: Package python3-pkg-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-ffc (>= 2018.1); however: Package python3-ffc is not installed. pbuilder-satisfydepends-dummy depends on python3-ffc (<< 2018.2); however: Package python3-ffc is not installed. pbuilder-satisfydepends-dummy depends on python3-dijitso (>= 2018.1); however: Package python3-dijitso is not installed. pbuilder-satisfydepends-dummy depends on python3-dijitso (<< 2018.2); however: Package python3-dijitso is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-ply; however: Package python3-ply is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libblas-dev{a} libblas3{a} libboost-atomic1.67-dev{a} libboost-atomic1.67.0{a} libboost-chrono-dev{a} libboost-chrono1.67-dev{a} libboost-chrono1.67.0{a} libboost-date-time1.67-dev{a} libboost-date-time1.67.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.67-dev{a} libboost-filesystem1.67.0{a} libboost-iostreams-dev{a} libboost-iostreams1.67-dev{a} libboost-math-dev{a} libboost-math1.67-dev{a} libboost-math1.67.0{a} libboost-mpi-dev{a} libboost-mpi1.67-dev{a} libboost-mpi1.67.0{a} libboost-program-options-dev{a} libboost-program-options1.67-dev{a} libboost-program-options1.67.0{a} libboost-regex1.67-dev{a} libboost-regex1.67.0{a} libboost-serialization-dev{a} libboost-serialization1.67-dev{a} libboost-serialization1.67.0{a} libboost-system1.67-dev{a} libboost-thread-dev{a} libboost-thread1.67-dev{a} libboost-thread1.67.0{a} libboost-timer-dev{a} libboost-timer1.67-dev{a} libboost-timer1.67.0{a} libboost1.67-dev{a} libbsd0{a} libbtf1{a} libcamd2{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcroco3{a} libcurl4{a} libcxsparse3{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphblas2{a} libgssapi-krb5-2{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103{a} libhdf5-openmpi-dev{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libhypre-2.15.1{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libklu1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmetis5{a} libmongoose2{a} libmpdec2{a} libmumps-5.1.2{a} libmumps-dev{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real-dev{a} libpetsc-real3.10{a} libpetsc-real3.10-dev{a} libpetsc3.10-dev-common{a} libpipeline1{a} libpmix2{a} libprocps7{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-6.0{a} libptscotch-dev{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} librbio2{a} librdmacm1{a} libreadline7{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.0{a} libscotch-6.0{a} libscotch-dev{a} libsigsegv2{a} libslepc-real3.10{a} libslepc-real3.10-dev{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libssl1.1{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist6{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libumfpack5{a} libuv1{a} libxml2{a} libxml2-dev{a} lsb-base{a} m4{a} man-db{a} mime-support{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} petsc-dev{a} pkg-config{a} po-debconf{a} procps{a} pybind11-dev{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-dijitso{a} python3-distutils{a} python3-ffc{a} python3-fiat{a} python3-lib2to3{a} python3-minimal{a} python3-mpi4py{a} python3-mpmath{a} python3-numpy{a} python3-petsc4py{a} python3-petsc4py-real{a} python3-pkg-resources{a} python3-ply{a} python3-setuptools{a} python3-slepc4py{a} python3-slepc4py-real{a} python3-sympy{a} python3-ufl{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} slepc-dev{a} swig{a} swig3.0{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl ipython3 javascript-common krb5-locales ksh libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl libpetsc3.10-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python-petsc4py-docs python-slepc4py-docs python3-pil shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 258 newly installed, 0 to remove and 0 not upgraded. Need to get 208 MB of archives. After unpacking 952 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libarchive13 amd64 3.3.3-4+deb10u1 [313 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get: 91 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u1 [189 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get: 98 http://deb.debian.org/debian buster/main amd64 libaec-dev amd64 1.0.2-1 [18.4 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libsuitesparseconfig5 amd64 1:5.4.0+dfsg-1 [20.9 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libamd2 amd64 1:5.4.0+dfsg-1 [33.4 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libarpack2 amd64 3.7.0-2 [102 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libblas-dev amd64 3.8.0-2 [154 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 liblapack-dev amd64 3.8.0-2 [2140 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libarpack2-dev amd64 3.7.0-2 [110 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libboost1.67-dev amd64 1.67.0-13+deb10u1 [8388 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libboost-atomic1.67.0 amd64 1.67.0-13+deb10u1 [226 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libboost-atomic1.67-dev amd64 1.67.0-13+deb10u1 [225 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libboost-chrono1.67.0 amd64 1.67.0-13+deb10u1 [234 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libboost-chrono1.67-dev amd64 1.67.0-13+deb10u1 [236 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libboost-chrono-dev amd64 1.67.0.1 [4268 B] Get: 113 http://deb.debian.org/debian buster/main amd64 libboost-date-time1.67.0 amd64 1.67.0-13+deb10u1 [239 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libboost-serialization1.67.0 amd64 1.67.0-13+deb10u1 [319 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libboost-serialization1.67-dev amd64 1.67.0-13+deb10u1 [359 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libboost-date-time1.67-dev amd64 1.67.0-13+deb10u1 [248 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libboost-dev amd64 1.67.0.1 [3864 B] Get: 118 http://deb.debian.org/debian buster/main amd64 libboost-filesystem1.67.0 amd64 1.67.0-13+deb10u1 [261 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libboost-system1.67-dev amd64 1.67.0-13+deb10u1 [231 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libboost-filesystem1.67-dev amd64 1.67.0-13+deb10u1 [269 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libboost-filesystem-dev amd64 1.67.0.1 [3684 B] Get: 122 http://deb.debian.org/debian buster/main amd64 libboost-regex1.67.0 amd64 1.67.0-13+deb10u1 [485 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u1 [9186 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libboost-regex1.67-dev amd64 1.67.0-13+deb10u1 [539 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libboost-iostreams1.67-dev amd64 1.67.0-13+deb10u1 [255 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libboost-iostreams-dev amd64 1.67.0.1 [3632 B] Get: 127 http://deb.debian.org/debian buster/main amd64 libboost-math1.67.0 amd64 1.67.0-13+deb10u1 [460 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 libboost-math1.67-dev amd64 1.67.0-13+deb10u1 [745 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libboost-math-dev amd64 1.67.0.1 [3848 B] Get: 130 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libboost-mpi1.67.0 amd64 1.67.0-13+deb10u1 [272 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get: 156 http://deb.debian.org/debian buster/main amd64 libboost-mpi1.67-dev amd64 1.67.0-13+deb10u1 [380 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 libboost-mpi-dev amd64 1.67.0.1 [3732 B] Get: 158 http://deb.debian.org/debian buster/main amd64 libboost-program-options1.67.0 amd64 1.67.0-13+deb10u1 [357 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 libboost-program-options1.67-dev amd64 1.67.0-13+deb10u1 [385 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 libboost-program-options-dev amd64 1.67.0.1 [3656 B] Get: 161 http://deb.debian.org/debian buster/main amd64 libboost-serialization-dev amd64 1.67.0.1 [3876 B] Get: 162 http://deb.debian.org/debian buster/main amd64 libboost-thread1.67.0 amd64 1.67.0-13+deb10u1 [268 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 libboost-thread1.67-dev amd64 1.67.0-13+deb10u1 [270 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 libboost-thread-dev amd64 1.67.0.1 [3672 B] Get: 165 http://deb.debian.org/debian buster/main amd64 libboost-timer1.67.0 amd64 1.67.0-13+deb10u1 [231 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 libboost-timer1.67-dev amd64 1.67.0-13+deb10u1 [231 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 libboost-timer-dev amd64 1.67.0.1 [3772 B] Get: 168 http://deb.debian.org/debian buster/main amd64 libbtf1 amd64 1:5.4.0+dfsg-1 [22.7 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 libcamd2 amd64 1:5.4.0+dfsg-1 [35.0 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 libccolamd2 amd64 1:5.4.0+dfsg-1 [36.4 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 libcolamd2 amd64 1:5.4.0+dfsg-1 [30.3 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 libmetis5 amd64 5.1.0.dfsg-5+b2 [175 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 libcholmod3 amd64 1:5.4.0+dfsg-1 [324 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 libcombblas1.16.0 amd64 1.6.2-3 [283 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 libcxsparse3 amd64 1:5.4.0+dfsg-1 [75.7 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 libfftw3-long3 amd64 3.3.8-2 [319 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 libfftw3-quad3 amd64 3.3.8-2 [558 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 libfftw3-bin amd64 3.3.8-2 [50.7 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 libfftw3-dev amd64 3.3.8-2 [2106 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 libfftw3-mpi3 amd64 3.3.8-2 [66.4 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 libfftw3-mpi-dev amd64 3.3.8-2 [66.6 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 libgraphblas2 amd64 1:5.4.0+dfsg-1 [1664 kB] Get: 188 http://deb.debian.org/debian buster/main amd64 libhdf5-openmpi-103 amd64 1.10.4+repack-10 [1373 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get: 193 http://deb.debian.org/debian buster/main amd64 libhdf5-openmpi-dev amd64 1.10.4+repack-10 [2513 kB] Get: 194 http://deb.debian.org/debian buster/main amd64 libhdf5-mpi-dev amd64 1.10.4+repack-10 [27.3 kB] Get: 195 http://deb.debian.org/debian buster/main amd64 libsuperlu-dist6 amd64 6.1.1+dfsg1-1 [404 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [161 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 libhypre-2.15.1 amd64 2.15.1-5 [1826 kB] Get: 198 http://deb.debian.org/debian buster/main amd64 libsuperlu-dev amd64 5.2.1+dfsg1-4 [18.4 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 libhypre-dev amd64 2.15.1-5 [171 kB] Get: 200 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get: 201 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 202 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get: 203 http://deb.debian.org/debian buster/main amd64 libklu1 amd64 1:5.4.0+dfsg-1 [85.3 kB] Get: 204 http://deb.debian.org/debian buster/main amd64 libldl2 amd64 1:5.4.0+dfsg-1 [22.1 kB] Get: 205 http://deb.debian.org/debian buster/main amd64 libmongoose2 amd64 1:5.4.0+dfsg-1 [44.7 kB] Get: 206 http://deb.debian.org/debian buster/main amd64 mpi-default-bin amd64 1.13 [4672 B] Get: 207 http://deb.debian.org/debian buster/main amd64 libscalapack-openmpi2.0 amd64 2.0.2-7+b2 [1467 kB] Get: 208 http://deb.debian.org/debian buster/main amd64 libmumps-5.1.2 amd64 5.1.2-4+b2 [1125 kB] Get: 209 http://deb.debian.org/debian buster/main amd64 libscalapack-openmpi-dev amd64 2.0.2-7+b2 [12.9 kB] Get: 210 http://deb.debian.org/debian buster/main amd64 libscalapack-mpi-dev amd64 2.0.2-7+b2 [8884 B] Get: 211 http://deb.debian.org/debian buster/main amd64 libmumps-dev amd64 5.1.2-4+b2 [1004 kB] Get: 212 http://deb.debian.org/debian buster/main amd64 libparpack2 amd64 3.7.0-2 [98.3 kB] Get: 213 http://deb.debian.org/debian buster/main amd64 libparpack2-dev amd64 3.7.0-2 [106 kB] Get: 214 http://deb.debian.org/debian buster/main amd64 libscotch-6.0 amd64 6.0.6-2 [422 kB] Get: 215 http://deb.debian.org/debian buster/main amd64 libptscotch-6.0 amd64 6.0.6-2 [660 kB] Get: 216 http://deb.debian.org/debian buster/main amd64 libumfpack5 amd64 1:5.4.0+dfsg-1 [243 kB] Get: 217 http://deb.debian.org/debian buster/main amd64 libpetsc-real3.10 amd64 3.10.3+dfsg1-5 [4979 kB] Get: 218 http://deb.debian.org/debian buster/main amd64 libpetsc3.10-dev-common all 3.10.3+dfsg1-5 [178 kB] Get: 219 http://deb.debian.org/debian buster/main amd64 librbio2 amd64 1:5.4.0+dfsg-1 [37.8 kB] Get: 220 http://deb.debian.org/debian buster/main amd64 libspqr2 amd64 1:5.4.0+dfsg-1 [78.6 kB] Get: 221 http://deb.debian.org/debian buster/main amd64 libsuitesparse-dev amd64 1:5.4.0+dfsg-1 [2448 kB] Get: 222 http://deb.debian.org/debian buster/main amd64 libscotch-dev amd64 6.0.6-2 [2941 kB] Get: 223 http://deb.debian.org/debian buster/main amd64 libptscotch-dev amd64 6.0.6-2 [6547 kB] Get: 224 http://deb.debian.org/debian buster/main amd64 libssl-dev amd64 1.1.1d-0+deb10u7 [1795 kB] Get: 225 http://deb.debian.org/debian buster/main amd64 libsuperlu-dist-dev amd64 6.1.1+dfsg1-1 [251 kB] Get: 226 http://deb.debian.org/debian buster/main amd64 libpetsc-real3.10-dev amd64 3.10.3+dfsg1-5 [5833 kB] Get: 227 http://deb.debian.org/debian buster/main amd64 libpetsc-real-dev all 3.10.3+dfsg1-5 [24.8 kB] Get: 228 http://deb.debian.org/debian buster/main amd64 libpython3.7 amd64 3.7.3-2+deb10u3 [1498 kB] Get: 229 http://deb.debian.org/debian buster/main amd64 libpython3.7-dev amd64 3.7.3-2+deb10u3 [48.4 MB] Get: 230 http://deb.debian.org/debian buster/main amd64 libpython3-dev amd64 3.7.3-1 [20.1 kB] Get: 231 http://deb.debian.org/debian buster/main amd64 libpython3-all-dev amd64 3.7.3-1 [1068 B] Get: 232 http://deb.debian.org/debian buster/main amd64 libslepc-real3.10 amd64 3.10.1+dfsg1-3 [888 kB] Get: 233 http://deb.debian.org/debian buster/main amd64 libslepc-real3.10-dev amd64 3.10.1+dfsg1-3 [4226 kB] Get: 234 http://deb.debian.org/debian buster/main amd64 libxml2-dev amd64 2.9.4+dfsg1-7+deb10u2 [784 kB] Get: 235 http://deb.debian.org/debian buster/main amd64 petsc-dev all 3.10.3+dfsg1-5 [28.0 kB] Get: 236 http://deb.debian.org/debian buster/main amd64 pybind11-dev all 2.2.4-2 [130 kB] Get: 237 http://deb.debian.org/debian buster/main amd64 python3-all amd64 3.7.3-1 [1068 B] Get: 238 http://deb.debian.org/debian buster/main amd64 python3.7-dev amd64 3.7.3-2+deb10u3 [510 kB] Get: 239 http://deb.debian.org/debian buster/main amd64 python3-dev amd64 3.7.3-1 [1264 B] Get: 240 http://deb.debian.org/debian buster/main amd64 python3-all-dev amd64 3.7.3-1 [1064 B] Get: 241 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 242 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get: 243 http://deb.debian.org/debian buster/main amd64 python3-mpi4py amd64 2.0.0-3+b3 [425 kB] Get: 244 http://deb.debian.org/debian buster/main amd64 python3-dijitso all 2018.1.1~git1-1 [24.7 kB] Get: 245 http://deb.debian.org/debian buster/main amd64 python3-mpmath all 1.1.0-1 [416 kB] Get: 246 http://deb.debian.org/debian buster/main amd64 python3-sympy all 1.3-2 [3500 kB] Get: 247 http://deb.debian.org/debian buster/main amd64 python3-fiat all 2018.1.0-5 [55.9 kB] Get: 248 http://deb.debian.org/debian buster/main amd64 python3-ufl all 2018.1.0-5 [162 kB] Get: 249 http://deb.debian.org/debian buster/main amd64 python3-ffc all 2018.1.0-5 [233 kB] Get: 250 http://deb.debian.org/debian buster/main amd64 swig3.0 amd64 3.0.12-2 [1397 kB] Get: 251 http://deb.debian.org/debian buster/main amd64 swig amd64 3.0.12-2 [310 kB] Get: 252 http://deb.debian.org/debian buster/main amd64 python3-petsc4py-real amd64 3.10.1-1 [832 kB] Get: 253 http://deb.debian.org/debian buster/main amd64 python3-petsc4py all 3.10.1-1 [9344 B] Get: 254 http://deb.debian.org/debian buster/main amd64 python3-ply all 3.11-3 [65.1 kB] Get: 255 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get: 256 http://deb.debian.org/debian buster/main amd64 python3-slepc4py-real amd64 3.10.0-2 [218 kB] Get: 257 http://deb.debian.org/debian buster/main amd64 python3-slepc4py all 3.10.0-2 [5228 B] Get: 258 http://deb.debian.org/debian buster/main amd64 slepc-dev all 3.10.1+dfsg1-3 [12.1 kB] Fetched 208 MB in 5s (45.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20945 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21357 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../002-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../003-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../007-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../010-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../011-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../012-libkrb5support0_1.17-3+deb10u3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../013-libk5crypto3_1.17-3+deb10u3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../014-libkrb5-3_1.17-3+deb10u3_amd64.deb ... 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No schema files found: doing nothing. Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libfftw3-long3:amd64 (3.3.8-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libmetis5:amd64 (5.1.0.dfsg-5+b2) ... Setting up libboost-date-time1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libboost-math1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up pybind11-dev (2.2.4-2) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libboost-chrono1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libboost-program-options-dev:amd64 (1.67.0.1) ... Setting up swig3.0 (3.0.12-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfftw3-quad3:amd64 (3.3.8-2) ... Setting up libssl-dev:amd64 (1.1.1d-0+deb10u7) ... Setting up autopoint (0.19.8.1-9) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up pkg-config (0.29-6) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libboost-timer1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libboost-filesystem1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up libboost-atomic1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up cmake-data (3.13.4-1) ... Setting up libboost-system1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libboost-dev:amd64 (1.67.0.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up libboost-serialization1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:amd64 (63.1-6+deb10u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libsuitesparseconfig5:amd64 (1:5.4.0+dfsg-1) ... Setting up chrpath (0.16-2+b1) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up librbio2:amd64 (1:5.4.0+dfsg-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libgraphblas2:amd64 (1:5.4.0+dfsg-1) ... Setting up libboost-atomic1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libboost-serialization1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libgfortran-8-dev:amd64 (8.3.0-6) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libboost-regex1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libboost-math1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up swig (3.0.12-2) ... Setting up libcolamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up libboost-filesystem1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libboost-thread1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libpython3.7:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:amd64 (3.3.3-4+deb10u1) ... Setting up libboost-chrono-dev:amd64 (1.67.0.1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libboost-regex1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libboost-math-dev:amd64 (1.67.0.1) ... Setting up libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up libldl2:amd64 (1:5.4.0+dfsg-1) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libbtf1:amd64 (1:5.4.0+dfsg-1) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libcamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up libmongoose2:amd64 (1:5.4.0+dfsg-1) ... Setting up libboost-date-time1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libxml2-dev:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libboost-serialization-dev:amd64 (1.67.0.1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libboost-timer1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libklu1:amd64 (1:5.4.0+dfsg-1) ... Setting up libccolamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libcxsparse3:amd64 (1:5.4.0+dfsg-1) ... Setting up libfftw3-dev:amd64 (3.3.8-2) ... Setting up libboost-iostreams1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libboost-timer-dev:amd64 (1.67.0.1) ... Setting up libboost-filesystem-dev:amd64 (1.67.0.1) ... Setting up libblas-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libibverbs1:amd64 (22.1-1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:amd64 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up ibverbs-providers:amd64 (22.1-1) ... Setting up libboost-thread1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libarpack2:amd64 (3.7.0-2) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Setting up python3 (3.7.3-1) ... Setting up libboost-iostreams-dev:amd64 (1.67.0.1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython3-all-dev:amd64 (3.7.3-1) ... Setting up liblapack-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up cmake (3.13.4-1) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up python3-mpmath (1.1.0-1) ... Setting up libsuperlu-dev:amd64 (5.2.1+dfsg1-4) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up libcholmod3:amd64 (1:5.4.0+dfsg-1) ... Setting up libboost-thread-dev:amd64 (1.67.0.1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python3-sympy (1.3-2) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up libspqr2:amd64 (1:5.4.0+dfsg-1) ... Setting up libarpack2-dev:amd64 (3.7.0-2) ... Setting up python3-setuptools (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-ply (3.11-3) ... Setting up python3-all (3.7.3-1) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up libpetsc3.10-dev-common (3.10.3+dfsg1-5) ... Setting up libumfpack5:amd64 (1:5.4.0+dfsg-1) ... Setting up python3-dev (3.7.3-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libfabric1 (1.6.2-3) ... Setting up python3-fiat (2018.1.0-5) ... Setting up python3-ufl (2018.1.0-5) ... Setting up libsuitesparse-dev:amd64 (1:5.4.0+dfsg-1) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up libboost-mpi1.67.0 (1.67.0-13+deb10u1) ... Setting up libfftw3-mpi3:amd64 (3.3.8-2) ... Setting up python3-mpi4py (2.0.0-3+b3) ... Setting up libhdf5-openmpi-103:amd64 (1.10.4+repack-10) ... Setting up libscotch-6.0 (6.0.6-2) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libparpack2:amd64 (3.7.0-2) ... Setting up libcombblas1.16.0:amd64 (1.6.2-3) ... Setting up python3-dijitso (2018.1.1~git1-1) ... Setting up python3-ffc (2018.1.0-5) ... update-alternatives: using /usr/lib/python3/dist-packages/ffc/backends/ufc/ufc.h to provide /usr/include/ufc.h (ufc.h) in auto mode Setting up libfftw3-mpi-dev:amd64 (3.3.8-2) ... Setting up mpi-default-bin (1.13) ... Setting up libptscotch-6.0 (6.0.6-2) ... Setting up libsuperlu-dist6:amd64 (6.1.1+dfsg1-1) ... Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.10.4+repack-10) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libscalapack-openmpi2.0 (2.0.2-7+b2) ... Setting up libhypre-2.15.1:amd64 (2.15.1-5) ... Setting up libsuperlu-dist-dev:amd64 (6.1.1+dfsg1-1) ... Setting up libmumps-5.1.2:amd64 (5.1.2-4+b2) ... Setting up libscalapack-openmpi-dev (2.0.2-7+b2) ... Setting up mpi-default-dev (1.13) ... Setting up libscalapack-mpi-dev (2.0.2-7+b2) ... Setting up libpetsc-real3.10:amd64 (3.10.3+dfsg1-5) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.10.3 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.10 (libpetsc.so.3.10) in auto mode Setting up libslepc-real3.10 (3.10.1+dfsg1-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.10.1 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.10 (libslepc.so.3.10) in auto mode Setting up libmumps-dev:amd64 (5.1.2-4+b2) ... Setting up libscotch-dev (6.0.6-2) ... Setting up libparpack2-dev:amd64 (3.7.0-2) ... Setting up python3-petsc4py-real (3.10.1-1) ... update-alternatives: using /usr/lib/python3/dist-packages/petsc4py_real to provide /usr/lib/python3/dist-packages/petsc4py (petsc4py) in auto mode Setting up libboost-mpi1.67-dev (1.67.0-13+deb10u1) ... Setting up libhypre-dev:amd64 (2.15.1-5) ... Setting up libptscotch-dev (6.0.6-2) ... Setting up libboost-mpi-dev (1.67.0.1) ... Setting up libhdf5-mpi-dev (1.10.4+repack-10) ... Setting up libpetsc-real3.10-dev:amd64 (3.10.3+dfsg1-5) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.10.3 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.10 (petsc3.10) in auto mode Setting up libslepc-real3.10-dev (3.10.1+dfsg1-3) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.10.1 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.10 (slepc3.10) in auto mode Setting up python3-petsc4py (3.10.1-1) ... Setting up slepc-dev (3.10.1+dfsg1-3) ... Setting up libpetsc-real-dev (3.10.3+dfsg1-5) ... Setting up python3-slepc4py-real (3.10.0-2) ... update-alternatives: using /usr/lib/python3/dist-packages/slepc4py_real to provide /usr/lib/python3/dist-packages/slepc4py (slepc4py) in auto mode Setting up petsc-dev (3.10.3+dfsg1-5) ... Setting up python3-slepc4py (3.10.0-2) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/dolfin-2018.1.0.post1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dolfin_2018.1.0.post1-16_source.changes dpkg-buildpackage: info: source package dolfin dpkg-buildpackage: info: source version 2018.1.0.post1-16 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions rm -rf installation-build build-tests dh_auto_clean make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build py3versions: no X-Python3-Version in control file, using supported versions dh build --buildsystem=cmake --with python3 dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_configure -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D PETSC_DIR:PATH=/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real -D SLEPC_DIR:PATH=/usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real -D DOLFIN_ENABLE_TRILINOS:BOOL=OFF -D DOLFIN_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFIN_ENABLE_PARMETIS:BOOL=OFF -D DOLFIN_ENABLE_SCOTCH:BOOL=ON -D DOLFIN_ENABLE_DOCS:BOOL=OFF -D DOLFIN_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFIN_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security" /build/dolfin-2018.1.0.post1/ cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D PETSC_DIR:PATH=/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real -D SLEPC_DIR:PATH=/usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real -D DOLFIN_ENABLE_TRILINOS:BOOL=OFF -D DOLFIN_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFIN_ENABLE_PARMETIS:BOOL=OFF -D DOLFIN_ENABLE_SCOTCH:BOOL=ON -D DOLFIN_ENABLE_DOCS:BOOL=OFF -D DOLFIN_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFIN_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security" /build/dolfin-2018.1.0.post1/ .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -- Boost version: 1.67.0 -- Found the following Boost libraries: -- timer -- filesystem -- program_options -- iostreams -- chrono -- system -- regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.7.3", minimum required is "3") -- Found UFC: /usr/include (Required is at least version "2018.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.13/Modules/CheckIncludeFile.cmake:70 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.13/Modules/CheckTypeSize.cmake:225 (check_include_file) cmake/modules/FindPETSc.cmake:213 (check_type_size) CMakeLists.txt:301 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Found PETSc: TRUE (found suitable version "3.10.3", minimum required is "3.7") -- Checking for one of the modules 'crayslepc_real;SLEPc' -- Test SLEPC_TEST_RUNS with shared library linking - Success -- Found SLEPc: TRUE (found suitable version "3.10.1", minimum required is "3.7") -- SUNDIALS could not be found/configured. (missing: SUNDIALS_LIBRARIES SUNDIALS_TEST_RUNS SUNDIALS_INCLUDE_DIRS SUNDIALS_VERSION SUNDIALS_VERSION_OK) (Required is at least version "3") -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 6.0.4) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Checking for package 'AMD' -- Looking for sgemm_ -- Looking for sgemm_ - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Performing test CHOLMOD_TEST_RUNS - Success -- Performing test UMFPACK_TEST_RUNS - Success -- Found UMFPACK: /usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/gcc/x86_64-linux-gnu/8/libgfortran.so;/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so;/usr/lib/gcc/x86_64-linux-gnu/8/libgfortran.so -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Performing test CHOLMOD_TEST_RUNS - Success -- Found CHOLMOD: /usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/gcc/x86_64-linux-gnu/8/libgfortran.so -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.4") found components: C -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC). * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information. * DOLFIN_ENABLE_MPI, Compile with support for MPI. * DOLFIN_ENABLE_PETSC, Compile with support for PETSc. * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK. * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD. * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFIN_ENABLE_SUNDIALS, Compile with support for SUNDIALS. * DOLFIN_ENABLE_ZLIB, Compile with support for zlib. * DOLFIN_ENABLE_HDF5, Compile with support for HDF5. -- The following OPTIONAL packages have been found: * MPI, Message Passing Interface (MPI) Enables DOLFIN to run in parallel with MPI * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, Enables the PETSc linear algebra backend * SLEPc (required version >= 3.7), Scalable Library for Eigenvalue Problem Computations, * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Enables parallel graph partitioning * UMFPACK, Sparse LU factorization library, * BLAS, Basic Linear Algebra Subprograms, * Threads * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, * HDF5, Hierarchical Data Format 5 (HDF5), * ZLIB, Compression library, -- The following REQUIRED packages have been found: * Boost, Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PythonInterp (required version >= 3), Interactive high-level object-oriented language, * UFC (required version >= 2018.1), Unified language for form-compilers (part of FFC), * PkgConfig -- The following features have been disabled: * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects. * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage. * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs. * DOLFIN_ENABLE_DOCS, Enable generation of documentation. * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors. * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos. * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS. -- The following OPTIONAL packages have not been found: * SUNDIALS (required version >= 3), SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers, Provides robust time integrators and nonlinear solvers that can easily be incorporated into existing simulation codes. -- -- Generating demo source files from reStructuredText -- -------------------------------------------------- extract written to /build/dolfin-2018.1.0.post1/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/auto-adaptive-poisson/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/biharmonic/cpp/Biharmonic.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/biharmonic/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/built-in-meshes/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/eigenvalue/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/hyperelasticity/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/mixed-poisson/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/nonmatching-interpolation/cpp/P1.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/nonmatching-interpolation/cpp/P3.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/nonmatching-interpolation/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/poisson/cpp/Poisson.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/poisson/cpp/main.cpp -- -- Generating form files in demo, test and bench directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo, test and bench directories -- ------------------------------------------------------------------- -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY PETSC_DIR SLEPC_DIR -- Build files have been written to: /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1 -B/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/dolfin/ale /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/ale /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake --color= Scanning dependencies of target compile_ale_forms make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 0%] Compiling form Poisson3D.ufl cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/dolfin/ale/Poisson3D.ufl [ 0%] Compiling form Poisson2D.ufl [ 0%] Compiling form Poisson1D.ufl cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/dolfin/ale/Poisson1D.ufl cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/dolfin/ale/Poisson2D.ufl make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 0%] Built target compile_ale_forms make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/dolfin /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= Scanning dependencies of target dolfin make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/adapt.cpp [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/adaptivesolve.cpp [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/ErrorControl.cpp [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/Extrapolation.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/GoalFunctional.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/marking.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/TimeSeries.cpp [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/ale/ALE.cpp [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/ale/HarmonicSmoothing.cpp [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/ale/MeshDisplacement.cpp [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/init.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/init.cpp cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -DDOLFIN_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"1787c6a9a51ebb964350c957e727f7f916ef486d\" -o CMakeFiles/dolfin.dir/common/defines.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/defines.cpp [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/MPI.cpp [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/SubSystemsManager.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/Timer.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/Timer.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/timing.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/UniqueIdGenerator.cpp [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/utils.cpp [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/Variable.cpp [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/assemble.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/assemble.cpp [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/assemble_local.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/AssemblerBase.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/Assembler.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/DirichletBC.cpp [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/DiscreteOperators.cpp [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/DofMapBuilder.cpp [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/DofMap.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/Equation.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/fem_utils.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/FiniteElement.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/Form.cpp [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LinearTimeDependentProblem.cpp [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LinearVariationalProblem.cpp [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LinearVariationalSolver.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LocalAssembler.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LocalSolver.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/MultiMeshAssembler.cpp [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/MultiMeshDofMap.cpp [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/MultiMeshDirichletBC.cpp [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/MultiMeshForm.cpp [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/NonlinearVariationalProblem.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/NonlinearVariationalSolver.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/PointSource.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/PETScDMCollection.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/solve.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/solve.cpp [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/SparsityPatternBuilder.cpp [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/SystemAssembler.cpp [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/UFC.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/assign.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/assign.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/CoefficientAssigner.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/Constant.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/Constant.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/Expression.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/Expression.cpp [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/FunctionAssigner.cpp [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/FunctionAXPY.cpp [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/Function.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/Function.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/FunctionSpace.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/GenericFunction.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/LagrangeInterpolator.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/MultiMeshCoefficientAssigner.cpp [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem 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-I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/MultiMeshFunctionSpace.cpp [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/MultiMeshSubSpace.cpp [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/SpecialFacetFunction.cpp [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o cd 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-I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/ConvexTriangulation.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/GenericBoundingBoxTree.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/GeometryDebugging.cpp [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/GeometryPredicates.cpp [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/intersect.cpp [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/IntersectionConstruction.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. 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/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/predicates.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/SimplexQuadrature.cpp [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/BoostGraphOrdering.cpp [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/GraphBuilder.cpp [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/GraphColoring.cpp [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/ParMETIS.cpp [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem 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-DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/HDF5File.cpp [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 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-DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/HDF5Utility.cpp [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd 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dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/RAWFile.cpp [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/SVGFile.cpp [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c 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CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/VTKWriter.cpp [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG 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-DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/X3DOM.cpp [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XDMFFile.cpp [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLFile.cpp [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLFunctionData.cpp [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLMesh.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLParameters.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLTable.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/xmlutils.cpp [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLVector.cpp [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XYZFile.cpp [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/Amesos2LUSolver.cpp [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/BelosKrylovSolver.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/BlockMatrix.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/BlockVector.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/CoordinateMatrix.cpp [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/DefaultFactory.cpp [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenFactory.cpp [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenKrylovSolver.cpp [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenLUSolver.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenMatrix.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenVector.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/GenericLinearSolver.cpp [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/GenericMatrix.cpp [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/Ifpack2Preconditioner.cpp [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/IndexMap.cpp [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/KrylovSolver.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/LinearOperator.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/LinearSolver.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/LUSolver.cpp [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/MueluPreconditioner.cpp [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScBaseMatrix.cpp [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScFactory.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScKrylovSolver.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScLinearOperator.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScLUSolver.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScMatrix.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScObject.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScOptions.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScPreconditioner.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScVector.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/SLEPcEigenSolver.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/solve.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/SparsityPattern.cpp [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 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/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/test_nullspace.cpp [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TpetraFactory.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TpetraMatrix.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TpetraVector.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TrilinosParameters.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/VectorSpaceBasis.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Event.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/Event.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/log.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 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-DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/LogStream.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Progress.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/Progress.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Table.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/Table.cpp [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/math/basic.cpp [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/math/Lagrange.cpp [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/math/Legendre.cpp [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/BoundaryComputation.cpp [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/BoundaryMesh.cpp [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Cell.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/CellType.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/DistributedMeshTools.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/DynamicMeshEditor.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Edge.cpp [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Face.cpp [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/FacetCell.cpp [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Facet.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/HexahedronCell.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/IntervalCell.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/LocalMeshData.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshColoring.cpp [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshConnectivity.cpp [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Mesh.cpp [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshData.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshDomains.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshEditor.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshEntity.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o cd 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dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshGeometry.cpp [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshHierarchy.cpp [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshOrdering.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshPartitioning.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 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/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshRenumbering.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshSmoothing.cpp [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshTopology.cpp [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshTransformation.cpp [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MultiMesh.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/PeriodicBoundaryComputation.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/PointCell.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/QuadrilateralCell.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC 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-DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/SubMesh.cpp [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/TetrahedronCell.cpp [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/TopologyComputation.cpp [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd 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dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/multistage/MultiStageScheme.cpp [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC 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-fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/multistage/RKSolver.cpp [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 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/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/nls/PETScSNESSolver.cpp [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/nls/PETScTAOSolver.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/nls/TAOLinearBoundSolver.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/parameter/GlobalParameters.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem 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CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o CMakeFiles/dolfin.dir/refinement/refine.cpp.o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o CMakeFiles/dolfin.dir/ts/CVode.cpp.o /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libamd.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.so 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/usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libamd.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/gcc/x86_64-linux-gnu/8/libgfortran.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin && /usr/bin/cmake -E cmake_symlink_library libdolfin.so.2018.1.0 libdolfin.so.2018.1 libdolfin.so make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [100%] Built target dolfin make[2]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions case " hurd-i386 m68k sh4 " in \ *\ amd64\ *) echo "ALL tests have been disabled on amd64";; \ *) set -e; \ cp -ra obj-x86_64-linux-gnu installation-build; \ cd obj-x86_64-linux-gnu; \ make -j15 unittests; \ make -j15 demos; \ case " i386 mips64el ppc64el " in \ *\ amd64\ *) IGNORE_MPI_TESTS="demo_hyperelasticity_mpi demo_elastodynamics_mpi demo_cahn-hilliard_mpi demo_navier-stokes_mpi demo_elasticity_mpi ";; \ *) IGNORE_MPI_TESTS="demo_hyperelasticity_mpi demo_elastodynamics_mpi ";; \ esac; \ echo "set(CTEST_CUSTOM_TESTS_IGNORE ${IGNORE_MPI_TESTS} )" >> CTestCustom.cmake; \ echo "Run C++ unit tests (serial)"; \ LD_LIBRARY_PATH=/build/dolfin-2018.1.0.post1//obj-x86_64-linux-gnu/dolfin:${LD_LIBRARY_PATH} ctest --output-on-failure -R unittests; \ echo "Run C++ regressions tests (serial)"; \ LD_LIBRARY_PATH=/build/dolfin-2018.1.0.post1//obj-x86_64-linux-gnu/dolfin:${LD_LIBRARY_PATH} ctest --output-on-failure -j15 -R demo -R serial; \ echo "Run C++ regression tests (MPI)"; \ case " armel armhf i386 hppa m68k powerpc " in \ *\ amd64\ *) echo "MPI tests have been disabled on amd64";; \ *) LD_LIBRARY_PATH=/build/dolfin-2018.1.0.post1//obj-x86_64-linux-gnu/dolfin:${LD_LIBRARY_PATH} ctest --output-on-failure -j5 -R demo -R mpi;; \ esac; \ cd ..; \ mv obj-x86_64-linux-gnu build-tests; \ mv installation-build obj-x86_64-linux-gnu;; \ esac make[2]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1 -B/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 unittests make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1 -B/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles 69 make -f CMakeFiles/Makefile2 test/unit/cpp/CMakeFiles/unittests.dir/all make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[5]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd 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demo/documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/build.make demo/documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/depend make -f demo/documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build.make demo/documented/bcs/cpp/CMakeFiles/demo_bcs.dir/depend make -f demo/documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/build.make demo/documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/depend make -f demo/documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/build.make demo/documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/documented/auto-adaptive-poisson/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu 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-Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_built-in-meshes.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/built-in-meshes/cpp/main.cpp make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' Scanning dependencies of target demo_cahn-hilliard make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/build.make demo/documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/build Scanning dependencies of target demo_periodic [ 69%] Building CXX object demo/documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/neumann-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_periodic.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/periodic/cpp/main.cpp [ 71%] Building CXX object demo/documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/main.cpp.o make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/singular-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/nonlinear-poisson/cpp/main.cpp [ 73%] Building CXX object demo/documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/cahn-hilliard/cpp/CahnHilliard3D.cpp [ 73%] Linking CXX executable demo_built-in-meshes cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/built-in-meshes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_built-in-meshes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_built-in-meshes.dir/main.cpp.o -o demo_built-in-meshes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so 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/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/stokes-iterative/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/DependInfo.cmake --color= Scanning dependencies of target demo_stokes-iterative make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/build.make demo/documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 74%] Building CXX object demo/documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/stokes-iterative/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_stokes-iterative.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/stokes-iterative/cpp/main.cpp [ 74%] Linking CXX executable demo_neumann-poisson cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/neumann-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_neumann-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_neumann-poisson.dir/main.cpp.o -o 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/usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 75%] Linking CXX executable demo_nonlinear-poisson cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/nonlinear-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonlinear-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o -o demo_nonlinear-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 75%] Linking CXX executable demo_poisson cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_poisson.dir/main.cpp.o -o demo_poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 75%] Built target demo_neumann-poisson make -f demo/documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/build.make demo/documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/documented/stokes-taylor-hood/cpp 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dependencies of target demo_ale make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/ale/cpp/CMakeFiles/demo_ale.dir/build.make demo/undocumented/ale/cpp/CMakeFiles/demo_ale.dir/build [ 75%] Built target demo_singular-poisson make -f demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/build.make demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 76%] Building CXX object demo/undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/advection-diffusion/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC 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/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_ale.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/ale/cpp/main.cpp Scanning dependencies of target demo_auto-adaptive-navier-stokes make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/build.make demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 76%] Building CXX object demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/auto-adaptive-navier-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC 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-I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_block-matrix.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/block-matrix/cpp/main.cpp Scanning dependencies of target demo_conditional make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build.make demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 76%] Building CXX object demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/conditional/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_conditional.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/conditional/cpp/main.cpp [ 76%] Linking CXX executable demo_nonmatching-interpolation cd 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/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/contact-vi-tao/cpp/main.cpp [ 78%] Linking CXX executable demo_hyperelasticity cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/hyperelasticity/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_hyperelasticity.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -o demo_hyperelasticity ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 78%] Linking CXX executable demo_biharmonic cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/biharmonic/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_biharmonic.dir/main.cpp.o -o demo_biharmonic ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 78%] Built target demo_hyperelasticity make -f demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build.make demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/curl-curl/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/curl-curl/cpp 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-I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_curl-curl.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/curl-curl/cpp/main.cpp [ 78%] Built target demo_biharmonic make -f demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build.make demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 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/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/cahn-hilliard/cpp/main.cpp Scanning dependencies of target demo_dg-advection-diffusion make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build.make demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 80%] Building CXX object demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/dg-advection-diffusion/cpp && 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'/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/dg-poisson/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/dg-poisson/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dg-poisson make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build.make demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 81%] Building CXX object demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/dg-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_dg-poisson.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/dg-poisson/cpp/main.cpp [ 81%] Linking CXX executable demo_subdomains cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/subdomains/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_subdomains.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_subdomains.dir/main.cpp.o -o demo_subdomains ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 81%] Built target demo_subdomains make -f demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build.make demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/elasticity/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/elasticity/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/DependInfo.cmake --color= Scanning dependencies of target demo_elasticity make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build.make demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 82%] Building CXX object demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/elasticity/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_elasticity.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/elasticity/cpp/main.cpp [ 82%] Linking CXX executable demo_block-matrix cd 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/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/conditional/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_conditional.dir/link.txt --verbose=1 make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_conditional.dir/main.cpp.o -o demo_conditional ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 83%] Built target demo_block-matrix make -f demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build.make demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/elastodynamics/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/elastodynamics/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/DependInfo.cmake --color= Scanning dependencies of target demo_elastodynamics make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build.make demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build [ 84%] Linking CXX executable demo_auto-adaptive-poisson cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/auto-adaptive-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_auto-adaptive-poisson.dir/link.txt --verbose=1 make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o -o demo_auto-adaptive-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so 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-std=c++11 -o CMakeFiles/demo_elastodynamics.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/elastodynamics/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 84%] Built target demo_conditional make -f demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build.make demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/eval/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/eval/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/DependInfo.cmake --color= [ 84%] Linking CXX executable demo_contact-vi-tao cd 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'/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build.make demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 85%] Building CXX object demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/eval/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_eval.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/eval/cpp/main.cpp [ 85%] Linking CXX executable demo_contact-vi-snes cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/contact-vi-snes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_contact-vi-snes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o -o demo_contact-vi-snes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so 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/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_extrapolation.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/extrapolation/cpp/main.cpp Scanning dependencies of target demo_functional make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build.make demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 85%] Building CXX object demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/functional/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC 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'/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/gmg-poisson/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/gmg-poisson/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/DependInfo.cmake --color= Scanning dependencies of target demo_gmg-poisson make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/build.make demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 85%] Building CXX object demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/main.cpp.o cd 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demo_cahn-hilliard make -f demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build.make demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/lift-drag/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/lift-drag/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/DependInfo.cmake --color= Scanning dependencies of target demo_lift-drag make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build.make demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 86%] Building CXX object demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/lift-drag/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_lift-drag.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/lift-drag/cpp/main.cpp [ 86%] Linking CXX executable demo_stokes-iterative cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/stokes-iterative/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_stokes-iterative.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_stokes-iterative.dir/main.cpp.o -o demo_stokes-iterative ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so 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-isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_mesh-quality.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/mesh-quality/cpp/main.cpp [ 87%] Linking CXX executable demo_stokes-taylor-hood cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/stokes-taylor-hood/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_stokes-taylor-hood.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o -o demo_stokes-taylor-hood ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 87%] Linking CXX executable demo_navier-stokes cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/documented/navier-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_navier-stokes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_navier-stokes.dir/main.cpp.o -o demo_navier-stokes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 87%] Built target demo_stokes-taylor-hood make -f demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build.make demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/meshfunction-refinement/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/meshfunction-refinement/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/DependInfo.cmake --color= Scanning dependencies of target demo_meshfunction-refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build.make demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 88%] Building CXX object demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/meshfunction-refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/meshfunction-refinement/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 88%] Built target demo_navier-stokes make -f demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build.make demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/multimesh-poisson/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/multimesh-poisson/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/DependInfo.cmake --color= Scanning dependencies of target demo_multimesh-poisson make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build.make demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 88%] Building CXX object demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/multimesh-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/multimesh-poisson/cpp/main.cpp [ 88%] Linking CXX executable demo_advection-diffusion cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/advection-diffusion/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_advection-diffusion.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_advection-diffusion.dir/main.cpp.o -o demo_advection-diffusion ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 88%] Built target demo_advection-diffusion make -f demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/build.make demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/multimesh-stokes/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/multimesh-stokes/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/DependInfo.cmake --color= Scanning dependencies of target demo_multimesh-stokes make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f 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/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/multimesh-stokes/cpp/main.cpp [ 89%] Linking CXX executable demo_dg-poisson cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/dg-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dg-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_dg-poisson.dir/main.cpp.o -o demo_dg-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 89%] Built target demo_dg-poisson make -f demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build.make demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/nonmatching-projection/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/nonmatching-projection/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/DependInfo.cmake --color= Scanning dependencies of target demo_nonmatching-projection make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build.make demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 89%] Building CXX object demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/nonmatching-projection/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/nonmatching-projection/cpp/main.cpp [ 90%] Linking CXX executable demo_extrapolation cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/extrapolation/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_extrapolation.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_extrapolation.dir/main.cpp.o -o demo_extrapolation ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 90%] Built target demo_extrapolation make -f demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build.make demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/parallel-refinement/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/parallel-refinement/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/DependInfo.cmake --color= Scanning dependencies of target demo_parallel-refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build.make demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 90%] Building CXX object demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/parallel-refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_parallel-refinement.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/parallel-refinement/cpp/main.cpp [ 90%] Linking CXX executable demo_mesh-quality cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/mesh-quality/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_mesh-quality.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_mesh-quality.dir/main.cpp.o -o demo_mesh-quality ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 90%] Linking CXX executable demo_curl-curl cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/curl-curl/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_curl-curl.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_curl-curl.dir/main.cpp.o -o demo_curl-curl ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 90%] Linking CXX executable demo_functional cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/functional/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_functional.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_functional.dir/main.cpp.o -o demo_functional ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 90%] Built target demo_mesh-quality make -f demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/build.make demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/parameters/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/parameters/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/DependInfo.cmake --color= [ 91%] Linking CXX executable demo_gmg-poisson cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/gmg-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_gmg-poisson.dir/link.txt --verbose=1 Scanning dependencies of target demo_parameters make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/build.make demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/build /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_gmg-poisson.dir/main.cpp.o -o demo_gmg-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Building CXX object demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/parameters/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_parameters.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/parameters/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Built target demo_curl-curl make -f demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/build.make demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/poisson1D/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson1D/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/DependInfo.cmake --color= make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Built target demo_functional make -f demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build.make demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/poisson1D-in-2D/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson1D-in-2D/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/DependInfo.cmake --color= Scanning dependencies of target demo_poisson1D-in-2D make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build.make demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' Scanning dependencies of target demo_poisson1D make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/build.make demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Building CXX object demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson1D-in-2D/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/poisson1D-in-2D/cpp/main.cpp [ 92%] Building CXX object demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson1D/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_poisson1D.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/poisson1D/cpp/main.cpp [ 92%] Linking CXX executable demo_dg-advection-diffusion cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/dg-advection-diffusion/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dg-advection-diffusion.dir/link.txt --verbose=1 make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o -o demo_dg-advection-diffusion ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 92%] Built target demo_gmg-poisson make -f demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/build.make demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/poisson-disc/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson-disc/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/DependInfo.cmake --color= Scanning dependencies of target demo_poisson-disc make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/build.make demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Building CXX object demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson-disc/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_poisson-disc.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/poisson-disc/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Built target demo_dg-advection-diffusion make -f demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build.make demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/refinement/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/refinement/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/DependInfo.cmake --color= Scanning dependencies of target demo_refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build.make demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Linking CXX executable demo_eval cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/eval/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_eval.dir/link.txt --verbose=1 [ 92%] Building CXX object demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_refinement.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/refinement/cpp/main.cpp /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_eval.dir/main.cpp.o -o demo_eval ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 92%] Linking CXX executable demo_meshfunction-refinement cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/meshfunction-refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_meshfunction-refinement.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o -o demo_meshfunction-refinement ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Built target demo_eval make -f demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build.make demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/spatial-coordinates/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/spatial-coordinates/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/DependInfo.cmake --color= [ 92%] Linking CXX executable demo_elasticity cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/elasticity/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_elasticity.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_elasticity.dir/main.cpp.o -o demo_elasticity ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so Scanning dependencies of target demo_spatial-coordinates make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build.make demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Building CXX object demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/spatial-coordinates/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/spatial-coordinates/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Built target demo_meshfunction-refinement make -f demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build.make demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/submesh/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/submesh/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/DependInfo.cmake --color= [ 92%] Linking CXX executable demo_lift-drag cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/lift-drag/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_lift-drag.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_lift-drag.dir/main.cpp.o -o demo_lift-drag ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so Scanning dependencies of target demo_submesh make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build.make demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Building CXX object demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/submesh/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_submesh.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/submesh/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Built target demo_elasticity make -f demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build.make demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/sym-dirichlet-bc/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/sym-dirichlet-bc/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/DependInfo.cmake --color= [ 92%] Linking CXX executable demo_elastodynamics cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/elastodynamics/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_elastodynamics.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_elastodynamics.dir/main.cpp.o -o demo_elastodynamics ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so Scanning dependencies of target demo_sym-dirichlet-bc make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build.make demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Building CXX object demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/sym-dirichlet-bc/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/sym-dirichlet-bc/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 92%] Built target demo_lift-drag make -f demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build.make demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/time-series/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/time-series/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/DependInfo.cmake --color= Scanning dependencies of target demo_time-series make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build.make demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 93%] Building CXX object demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/time-series/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_time-series.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/time-series/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 93%] Built target demo_elastodynamics make -f demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build.make demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/waveguide/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/waveguide/cpp /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/DependInfo.cmake --color= Scanning dependencies of target demo_waveguide make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build.make demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 93%] Building CXX object demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/waveguide/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_waveguide.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/waveguide/cpp/main.cpp [ 93%] Linking CXX executable demo_multimesh-poisson cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/multimesh-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_multimesh-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o -o demo_multimesh-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 93%] Built target demo_multimesh-poisson [ 93%] Linking CXX executable demo_parallel-refinement cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/parallel-refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_parallel-refinement.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_parallel-refinement.dir/main.cpp.o -o demo_parallel-refinement ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 93%] Linking CXX executable demo_parameters cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/parameters/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_parameters.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_parameters.dir/main.cpp.o -o demo_parameters ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 93%] Built target demo_parallel-refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 93%] Built target demo_parameters [ 94%] Linking CXX executable demo_submesh cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/submesh/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_submesh.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_submesh.dir/main.cpp.o -o demo_submesh ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 94%] Built target demo_submesh [ 95%] Linking CXX executable demo_nonmatching-projection cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/nonmatching-projection/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonmatching-projection.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o -o demo_nonmatching-projection ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 95%] Linking CXX executable demo_refinement cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_refinement.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_refinement.dir/main.cpp.o -o demo_refinement ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 95%] Linking CXX executable demo_time-series cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/time-series/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_time-series.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_time-series.dir/main.cpp.o -o demo_time-series ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 95%] Linking CXX executable demo_poisson1D cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson1D/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson1D.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_poisson1D.dir/main.cpp.o -o demo_poisson1D ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 95%] Built target demo_nonmatching-projection make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 95%] Built target demo_refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 95%] Built target demo_time-series [ 96%] Linking CXX executable demo_poisson1D-in-2D cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson1D-in-2D/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson1D-in-2D.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o -o demo_poisson1D-in-2D ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 96%] Built target demo_poisson1D make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 96%] Built target demo_poisson1D-in-2D [ 97%] Linking CXX executable demo_poisson-disc cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/poisson-disc/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson-disc.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_poisson-disc.dir/main.cpp.o -o demo_poisson-disc ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so [ 97%] Linking CXX executable demo_spatial-coordinates cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/spatial-coordinates/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_spatial-coordinates.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o -o demo_spatial-coordinates ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 97%] Built target demo_poisson-disc [ 98%] Linking CXX executable demo_multimesh-stokes cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/multimesh-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_multimesh-stokes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o -o demo_multimesh-stokes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 98%] Built target demo_spatial-coordinates make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 98%] Built target demo_multimesh-stokes [ 98%] Linking CXX executable demo_sym-dirichlet-bc cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/sym-dirichlet-bc/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sym-dirichlet-bc.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o -o demo_sym-dirichlet-bc ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 98%] Built target demo_sym-dirichlet-bc [ 98%] Linking CXX executable demo_auto-adaptive-navier-stokes cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/auto-adaptive-navier-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_auto-adaptive-navier-stokes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o -o demo_auto-adaptive-navier-stokes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 98%] Built target demo_auto-adaptive-navier-stokes [100%] Linking CXX executable demo_waveguide cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo/undocumented/waveguide/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_waveguide.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_waveguide.dir/main.cpp.o -o demo_waveguide ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [100%] Built target demo_waveguide make[7]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles 0 make[6]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/demo' make[5]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' Built target demos make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' Run C++ unit tests (serial) Test project /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu Start 1: unittests 1/1 Test #1: unittests ........................ Passed 6.57 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 6.78 sec Run C++ regressions tests (serial) Test project /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu Start 3: demo_auto-adaptive-poisson_serial Start 5: demo_bcs_serial Start 7: demo_biharmonic_serial Start 9: demo_built-in-meshes_serial Start 11: demo_cahn-hilliard_serial Start 13: demo_eigenvalue_serial Start 14: demo_hyperelasticity_serial Start 16: demo_mixed-poisson_serial Start 18: demo_navier-stokes_serial Start 20: demo_neumann-poisson_serial Start 22: demo_nonlinear-poisson_serial Start 24: demo_nonmatching-interpolation_serial Start 26: demo_periodic_serial Start 28: demo_poisson_serial Start 30: demo_singular-poisson_serial 1/51 Test #7: demo_biharmonic_serial .................... Passed 1.57 sec Start 32: demo_stokes-iterative_serial 2/51 Test #22: demo_nonlinear-poisson_serial ............. Passed 1.52 sec Start 34: demo_stokes-taylor-hood_serial 3/51 Test #28: demo_poisson_serial ....................... Passed 1.47 sec Start 36: demo_subdomains_serial 4/51 Test #26: demo_periodic_serial ...................... Passed 1.60 sec Start 38: demo_advection-diffusion_serial 5/51 Test #24: demo_nonmatching-interpolation_serial ..... Passed 1.96 sec Start 40: demo_ale_serial 6/51 Test #20: demo_neumann-poisson_serial ............... Passed 2.01 sec Start 42: demo_auto-adaptive-navier-stokes_serial 7/51 Test #16: demo_mixed-poisson_serial ................. Passed 2.06 sec Start 44: demo_block-matrix_serial 8/51 Test #9: demo_built-in-meshes_serial ............... Passed 2.14 sec Start 46: demo_conditional_serial 9/51 Test #30: demo_singular-poisson_serial .............. Passed 2.02 sec Start 48: demo_contact-vi-snes_serial 10/51 Test #13: demo_eigenvalue_serial .................... Passed 2.52 sec Start 50: demo_contact-vi-tao_serial 11/51 Test #5: demo_bcs_serial ........................... Passed 3.12 sec Start 52: demo_curl-curl_serial 12/51 Test #36: demo_subdomains_serial .................... Passed 1.54 sec Start 54: demo_dg-advection-diffusion_serial 13/51 Test #40: demo_ale_serial ........................... Passed 1.43 sec Start 56: demo_dg-poisson_serial 14/51 Test #44: demo_block-matrix_serial .................. Passed 1.39 sec Start 58: demo_elasticity_serial 15/51 Test #46: demo_conditional_serial ................... Passed 2.20 sec Start 59: demo_elastodynamics_serial 16/51 Test #50: demo_contact-vi-tao_serial ................ Passed 2.18 sec Start 61: demo_eval_serial 17/51 Test #56: demo_dg-poisson_serial .................... Passed 1.57 sec Start 63: demo_extrapolation_serial 18/51 Test #48: demo_contact-vi-snes_serial ............... Passed 3.38 sec Start 65: demo_functional_serial 19/51 Test #38: demo_advection-diffusion_serial ........... Passed 4.14 sec Start 67: demo_gmg-poisson_serial 20/51 Test #54: demo_dg-advection-diffusion_serial ........ Passed 3.18 sec Start 69: demo_lift-drag_serial 21/51 Test #63: demo_extrapolation_serial ................. Passed 1.49 sec Start 71: demo_mesh-quality_serial 22/51 Test #65: demo_functional_serial .................... Passed 1.34 sec Start 73: demo_meshfunction-refinement_serial 23/51 Test #34: demo_stokes-taylor-hood_serial ............ Passed 5.73 sec Start 75: demo_multimesh-poisson_serial 24/51 Test #67: demo_gmg-poisson_serial ................... Passed 1.48 sec Start 77: demo_multimesh-stokes_serial 25/51 Test #69: demo_lift-drag_serial ..................... Passed 1.48 sec Start 79: demo_nonmatching-projection_serial 26/51 Test #73: demo_meshfunction-refinement_serial ....... Passed 1.30 sec Start 81: demo_parallel-refinement_serial 27/51 Test #71: demo_mesh-quality_serial .................. Passed 1.59 sec Start 83: demo_parameters_serial 28/51 Test #61: demo_eval_serial .......................... Passed 3.66 sec Start 85: demo_poisson1D_serial 29/51 Test #18: demo_navier-stokes_serial ................. Passed 8.53 sec Start 87: demo_poisson1D-in-2D_serial 30/51 Test #77: demo_multimesh-stokes_serial .............. Passed 1.79 sec Start 89: demo_poisson-disc_serial 31/51 Test #81: demo_parallel-refinement_serial ........... Passed 1.37 sec Start 91: demo_refinement_serial 32/51 Test #83: demo_parameters_serial .................... Passed 1.39 sec Start 93: demo_spatial-coordinates_serial 33/51 Test #85: demo_poisson1D_serial ..................... Passed 1.30 sec Start 95: demo_submesh_serial 34/51 Test #87: demo_poisson1D-in-2D_serial ............... Passed 1.39 sec Start 97: demo_sym-dirichlet-bc_serial 35/51 Test #79: demo_nonmatching-projection_serial ........ Passed 2.36 sec Start 99: demo_time-series_serial 36/51 Test #91: demo_refinement_serial .................... Passed 1.47 sec Start 101: demo_waveguide_serial 37/51 Test #95: demo_submesh_serial ....................... Passed 1.47 sec 38/51 Test #89: demo_poisson-disc_serial .................. Passed 2.08 sec 39/51 Test #93: demo_spatial-coordinates_serial ........... Passed 1.64 sec 40/51 Test #99: demo_time-series_serial ................... Passed 1.53 sec 41/51 Test #75: demo_multimesh-poisson_serial ............. Passed 5.40 sec 42/51 Test #101: demo_waveguide_serial ..................... Passed 1.97 sec 43/51 Test #3: demo_auto-adaptive-poisson_serial ......... Passed 16.70 sec 44/51 Test #52: demo_curl-curl_serial ..................... Passed 14.96 sec 45/51 Test #97: demo_sym-dirichlet-bc_serial .............. Passed 8.41 sec 46/51 Test #58: demo_elasticity_serial .................... Passed 16.76 sec 47/51 Test #42: demo_auto-adaptive-navier-stokes_serial ... Passed 48.68 sec 48/51 Test #59: demo_elastodynamics_serial ................ Passed 50.73 sec 49/51 Test #32: demo_stokes-iterative_serial .............. Passed 90.41 sec 50/51 Test #14: demo_hyperelasticity_serial ............... Passed 237.50 sec 51/51 Test #11: demo_cahn-hilliard_serial ................. Passed 290.95 sec 100% tests passed, 0 tests failed out of 51 Total Test time (real) = 291.04 sec Run C++ regression tests (MPI) Test project /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu Start 2: demo_auto-adaptive-poisson_mpi Start 4: demo_bcs_mpi Start 6: demo_biharmonic_mpi Start 8: demo_built-in-meshes_mpi Start 10: demo_cahn-hilliard_mpi 1/49 Test #2: demo_auto-adaptive-poisson_mpi ......... Passed 1.46 sec Start 12: demo_eigenvalue_mpi 2/49 Test #6: demo_biharmonic_mpi .................... Passed 8.08 sec Start 15: demo_mixed-poisson_mpi 3/49 Test #8: demo_built-in-meshes_mpi ............... Passed 11.10 sec Start 17: demo_navier-stokes_mpi 4/49 Test #12: demo_eigenvalue_mpi .................... Passed 13.65 sec Start 19: demo_neumann-poisson_mpi 5/49 Test #4: demo_bcs_mpi ........................... Passed 15.58 sec Start 21: demo_nonlinear-poisson_mpi 6/49 Test #15: demo_mixed-poisson_mpi ................. Passed 12.65 sec Start 23: demo_nonmatching-interpolation_mpi 7/49 Test #21: demo_nonlinear-poisson_mpi ............. Passed 6.79 sec Start 25: demo_periodic_mpi 8/49 Test #23: demo_nonmatching-interpolation_mpi ..... Passed 1.74 sec Start 27: demo_poisson_mpi 9/49 Test #19: demo_neumann-poisson_mpi ............... Passed 8.35 sec Start 29: demo_singular-poisson_mpi 10/49 Test #25: demo_periodic_mpi ...................... Passed 7.62 sec Start 31: demo_stokes-iterative_mpi 11/49 Test #27: demo_poisson_mpi ....................... Passed 8.57 sec Start 33: demo_stokes-taylor-hood_mpi 12/49 Test #29: demo_singular-poisson_mpi .............. Passed 22.89 sec Start 35: demo_subdomains_mpi 13/49 Test #35: demo_subdomains_mpi .................... Passed 1.78 sec Start 37: demo_advection-diffusion_mpi 14/49 Test #33: demo_stokes-taylor-hood_mpi ............ Passed 18.02 sec Start 39: demo_ale_mpi 15/49 Test #39: demo_ale_mpi ........................... Passed 8.12 sec Start 41: demo_auto-adaptive-navier-stokes_mpi 16/49 Test #41: demo_auto-adaptive-navier-stokes_mpi ... Passed 2.63 sec Start 43: demo_block-matrix_mpi 17/49 Test #43: demo_block-matrix_mpi .................. Passed 5.60 sec Start 45: demo_conditional_mpi 18/49 Test #37: demo_advection-diffusion_mpi ........... Passed 23.74 sec Start 47: demo_contact-vi-snes_mpi 19/49 Test #45: demo_conditional_mpi ................... Passed 8.32 sec Start 49: demo_contact-vi-tao_mpi 20/49 Test #47: demo_contact-vi-snes_mpi ............... Passed 27.00 sec Start 51: demo_curl-curl_mpi 21/49 Test #49: demo_contact-vi-tao_mpi ................ Passed 58.36 sec Start 53: demo_dg-advection-diffusion_mpi 22/49 Test #53: demo_dg-advection-diffusion_mpi ........ Passed 19.68 sec Start 55: demo_dg-poisson_mpi 23/49 Test #55: demo_dg-poisson_mpi .................... Passed 3.32 sec Start 57: demo_elasticity_mpi 24/49 Test #51: demo_curl-curl_mpi ..................... Passed 75.33 sec Start 60: demo_eval_mpi 25/49 Test #60: demo_eval_mpi .......................... Passed 1.60 sec Start 62: demo_extrapolation_mpi 26/49 Test #62: demo_extrapolation_mpi ................. Passed 1.46 sec Start 64: demo_functional_mpi 27/49 Test #64: demo_functional_mpi .................... Passed 2.74 sec Start 66: demo_gmg-poisson_mpi 28/49 Test #66: demo_gmg-poisson_mpi ................... Passed 9.22 sec Start 68: demo_lift-drag_mpi 29/49 Test #68: demo_lift-drag_mpi ..................... Passed 4.12 sec Start 70: demo_mesh-quality_mpi 30/49 Test #70: demo_mesh-quality_mpi .................. Passed 4.86 sec Start 72: demo_meshfunction-refinement_mpi 31/49 Test #72: demo_meshfunction-refinement_mpi ....... Passed 1.42 sec Start 74: demo_multimesh-poisson_mpi 32/49 Test #74: demo_multimesh-poisson_mpi ............. Passed 1.38 sec Start 76: demo_multimesh-stokes_mpi 33/49 Test #76: demo_multimesh-stokes_mpi .............. Passed 1.42 sec Start 78: demo_nonmatching-projection_mpi 34/49 Test #57: demo_elasticity_mpi .................... Passed 48.41 sec Start 80: demo_parallel-refinement_mpi 35/49 Test #78: demo_nonmatching-projection_mpi ........ Passed 1.46 sec Start 82: demo_parameters_mpi 36/49 Test #82: demo_parameters_mpi .................... Passed 1.42 sec Start 84: demo_poisson1D_mpi 37/49 Test #80: demo_parallel-refinement_mpi ........... Passed 1.87 sec Start 86: demo_poisson1D-in-2D_mpi 38/49 Test #86: demo_poisson1D-in-2D_mpi ............... Passed 1.35 sec Start 88: demo_poisson-disc_mpi 39/49 Test #88: demo_poisson-disc_mpi .................. Passed 1.41 sec Start 90: demo_refinement_mpi 40/49 Test #84: demo_poisson1D_mpi ..................... Passed 3.94 sec Start 92: demo_spatial-coordinates_mpi 41/49 Test #90: demo_refinement_mpi .................... Passed 2.88 sec Start 94: demo_submesh_mpi 42/49 Test #94: demo_submesh_mpi ....................... Passed 1.38 sec Start 96: demo_sym-dirichlet-bc_mpi 43/49 Test #92: demo_spatial-coordinates_mpi ........... Passed 4.19 sec Start 98: demo_time-series_mpi 44/49 Test #98: demo_time-series_mpi ................... Passed 1.44 sec Start 100: demo_waveguide_mpi 45/49 Test #100: demo_waveguide_mpi ..................... Passed 2.58 sec 46/49 Test #31: demo_stokes-iterative_mpi .............. Passed 190.76 sec 47/49 Test #96: demo_sym-dirichlet-bc_mpi .............. Passed 22.11 sec 48/49 Test #17: demo_navier-stokes_mpi ................. Passed 234.76 sec 49/49 Test #10: demo_cahn-hilliard_mpi ................. Passed 281.28 sec 100% tests passed, 0 tests failed out of 49 Total Test time (real) = 281.30 sec make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary py3versions: no X-Python3-Version in control file, using supported versions dh binary --buildsystem=cmake --with python3 dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake debian/rules override_dh_auto_install make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/dolfin-2018.1.0.post1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1 -B/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/dolfin/ale /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/ale /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [ 0%] Built target compile_ale_forms make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/dolfin /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' [100%] Built target dolfin make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/bin/dolfin-convert -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/bin/dolfin-order -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/bin/dolfin-plot -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/dolfin.conf -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/bin/dolfin-version -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/bin/fenics-version -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/bin/dolfin-get-demos -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/waveguide -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/waveguide/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/waveguide/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/waveguide/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.ufl -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.py -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/time-series -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/time-series/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/time-series/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/time-series/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/Poisson.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/Poisson.ufl -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/submesh -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/submesh/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/submesh/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/submesh/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/spatial-coordinates -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.ufl -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/refinement -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/refinement/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/refinement/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/refinement/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D/cpp/Poisson.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D/cpp/Poisson.ufl -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D-in-2D -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/Poisson.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/Poisson.ufl -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson-disc -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson-disc/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson-disc/cpp/CMakeLists.txt -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson-disc/cpp/PoissonDisc.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson-disc/cpp/main.cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/poisson-disc/cpp/PoissonDisc.ufl -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/parameters -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/parameters/cpp -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/demo/undocumented/parameters/cpp/CMakeLists.txt -- Installing: 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/build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/CoordinateMatrix.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/DefaultFactory.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/dolfin_la.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/EigenFactory.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/EigenKrylovSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/EigenLUSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/EigenMatrix.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/EigenVector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/GenericLinearAlgebraFactory.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/GenericLinearOperator.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/GenericLinearSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/GenericMatrix.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/GenericTensor.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/GenericVector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/Ifpack2Preconditioner.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/IndexMap.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/KrylovSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/LinearAlgebraObject.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/LinearOperator.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/LinearSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/LUSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/Matrix.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/MueluPreconditioner.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScBaseMatrix.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScFactory.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScKrylovSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScLinearOperator.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScLUSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScMatrix.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScObject.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScOptions.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScPreconditioner.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScVector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/Scalar.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/SLEPcEigenSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/solve.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/SparsityPattern.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/SUNDIALSNVector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TensorLayout.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/test_nullspace.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TpetraFactory.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TpetraMatrix.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TpetraVector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TrilinosParameters.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TrilinosPreconditioner.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/Vector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/VectorSpaceBasis.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/dolfin_log.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/Event.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/Logger.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/log.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/LogLevel.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/LogManager.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/LogStream.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/Progress.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/Table.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/math/basic.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/math/dolfin_math.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/math/Lagrange.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/math/Legendre.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/BoundaryComputation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/BoundaryMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/Cell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/CellType.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/DistributedMeshTools.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/dolfin_mesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/DomainBoundary.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/DynamicMeshEditor.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/Edge.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/Face.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/FacetCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/Facet.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/HexahedronCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/IntervalCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/LocalMeshData.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/LocalMeshValueCollection.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshColoring.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshConnectivity.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshData.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshDomains.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshEditor.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshEntity.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshEntityIteratorBase.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshEntityIterator.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshFunction.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshGeometry.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/Mesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshHierarchy.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshOrdering.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshPartitioning.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshQuality.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshRelation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshRenumbering.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshSmoothing.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshTopology.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshTransformation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshValueCollection.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MultiMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/PeriodicBoundaryComputation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/PointCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/QuadrilateralCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/SubDomain.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/SubMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/Vertex.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/multistage/RKSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/parameter/Parameter.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/parameter/Parameters.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/refine.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/ts/CVode.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1 -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/x86_64-linux-gnu/libdolfin.so -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-x86_64-linux-gnu' dh_numpy3 for v in python3.7; do \ cd python; \ PATH=/build/dolfin-2018.1.0.post1/debian/tmp/usr/bin:$PATH \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include" \ VERBOSE=1 \ $v setup.py install --root=/build/dolfin-2018.1.0.post1/debian/tmp --install-layout=deb; \ done; running install running build running build_py creating build creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/dolfin copying dolfin/__init__.py -> build/lib.linux-x86_64-3.7/dolfin creating build/lib.linux-x86_64-3.7/dolfin/common copying dolfin/common/timer.py -> build/lib.linux-x86_64-3.7/dolfin/common copying dolfin/common/plotting.py -> build/lib.linux-x86_64-3.7/dolfin/common copying dolfin/common/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/common creating build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/specialfunctions.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/multimeshfunctionspace.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/multimeshfunction.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/jit.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/functionspace.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/function.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/expression.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/constant.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/argument.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/function creating build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/solving.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/solvers.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/projection.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/problem.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/norms.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/multimeshdirichletbc.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/interpolation.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/formmanipulations.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/form.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/errorcontrolgenerator.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/dirichletbc.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/assembling.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/adaptivesolving.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/fem creating build/lib.linux-x86_64-3.7/dolfin/la copying dolfin/la/solver.py -> build/lib.linux-x86_64-3.7/dolfin/la copying dolfin/la/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/la creating build/lib.linux-x86_64-3.7/dolfin/io copying dolfin/io/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/io creating build/lib.linux-x86_64-3.7/dolfin/jit copying dolfin/jit/pybind11jit.py -> build/lib.linux-x86_64-3.7/dolfin/jit copying dolfin/jit/jit.py -> build/lib.linux-x86_64-3.7/dolfin/jit copying dolfin/jit/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/jit creating build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/ufl_util.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/svgtools.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/subdomain.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/meshvaluecollection.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/meshfunction.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/ale.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/mesh creating build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/rushlarsenschemes.py -> build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/multistagesolvers.py -> build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/multistagescheme.py -> build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/factorize.py -> build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/multistage creating build/lib.linux-x86_64-3.7/dolfin/parameter copying dolfin/parameter/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/parameter creating build/lib.linux-x86_64-3.7/dolfin_utils creating build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/xml_writer.py -> build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/meshconvert.py -> build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/abaqus.py -> build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/__init__.py -> build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert creating build/lib.linux-x86_64-3.7/dolfin_utils/test copying dolfin_utils/test/fixtures.py -> build/lib.linux-x86_64-3.7/dolfin_utils/test copying dolfin_utils/test/skips.py -> build/lib.linux-x86_64-3.7/dolfin_utils/test copying dolfin_utils/test/paths.py -> build/lib.linux-x86_64-3.7/dolfin_utils/test copying dolfin_utils/test/__init__.py -> build/lib.linux-x86_64-3.7/dolfin_utils/test creating build/lib.linux-x86_64-3.7/fenics copying fenics/__init__.py -> build/lib.linux-x86_64-3.7/fenics running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/bin/python3.7 (found version "3.7.3") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.7m.so -- Performing Test HAS_CPP14_FLAG -- Performing Test HAS_CPP14_FLAG - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;SLEPc' -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- LTO enabled -- Checking for package 'PETSc4Py' -- petsc4py version 3.10.1 found -- Found PETSc4py: /usr/lib/python3/dist-packages/petsc4py/include -- Found MPI4PY: /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done -- Generating done -- Build files have been written to: /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 make[2]: Entering directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1/python -B/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' /usr/bin/make -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend make[4]: Entering directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' cd /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1/python /build/dolfin-2018.1.0.post1/python /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/cpp.dir/DependInfo.cmake --color= Dependee "/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/cpp.dir/DependInfo.cmake" is newer than depender "/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/cpp.dir/depend.internal". Dependee "/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/cpp.dir/depend.internal". Scanning dependencies of target cpp make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' /usr/bin/make -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build make[4]: Entering directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' [ 4%] Building CXX object CMakeFiles/cpp.dir/src/dolfin.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/dolfin.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/dolfin.cpp [ 9%] Building CXX object CMakeFiles/cpp.dir/src/ale.cpp.o [ 19%] Building CXX object CMakeFiles/cpp.dir/src/adaptivity.cpp.o [ 19%] Building CXX object CMakeFiles/cpp.dir/src/parameter.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/parameter.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/parameter.cpp /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include 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-Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/ale.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/ale.cpp [ 23%] Building CXX object CMakeFiles/cpp.dir/src/common.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/common.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/common.cpp [ 28%] Building CXX object CMakeFiles/cpp.dir/src/fem.cpp.o [ 33%] Building CXX object CMakeFiles/cpp.dir/src/function.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/fem.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/fem.cpp [ 38%] Building CXX object CMakeFiles/cpp.dir/src/generation.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem 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-I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/log.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/log.cpp [ 61%] Building CXX object CMakeFiles/cpp.dir/src/mesh.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC 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-fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/io.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/io.cpp [ 80%] Building CXX object CMakeFiles/cpp.dir/src/la.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/la.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/la.cpp [ 85%] Building CXX object CMakeFiles/cpp.dir/src/nls.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem 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/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/refinement.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/refinement.cpp [ 95%] Building CXX object CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/MPICommWrapper.cpp [100%] Linking CXX shared library ../lib.linux-x86_64-3.7/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,cpp.cpython-37m-x86_64-linux-gnu.so -o ../lib.linux-x86_64-3.7/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so CMakeFiles/cpp.dir/src/dolfin.cpp.o CMakeFiles/cpp.dir/src/parameter.cpp.o CMakeFiles/cpp.dir/src/adaptivity.cpp.o CMakeFiles/cpp.dir/src/ale.cpp.o CMakeFiles/cpp.dir/src/common.cpp.o CMakeFiles/cpp.dir/src/fem.cpp.o CMakeFiles/cpp.dir/src/function.cpp.o CMakeFiles/cpp.dir/src/generation.cpp.o CMakeFiles/cpp.dir/src/geometry.cpp.o CMakeFiles/cpp.dir/src/graph.cpp.o CMakeFiles/cpp.dir/src/log.cpp.o CMakeFiles/cpp.dir/src/math.cpp.o CMakeFiles/cpp.dir/src/mesh.cpp.o CMakeFiles/cpp.dir/src/multistage.cpp.o CMakeFiles/cpp.dir/src/ts.cpp.o CMakeFiles/cpp.dir/src/io.cpp.o CMakeFiles/cpp.dir/src/la.cpp.o CMakeFiles/cpp.dir/src/nls.cpp.o CMakeFiles/cpp.dir/src/refinement.cpp.o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -Wl,-rpath,/build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib -flto /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so -lsz -lz -ldl -lm /usr/lib/slepcdir/slepc3.10/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/bin/strip /build/dolfin-2018.1.0.post1/python/build/lib.linux-x86_64-3.7/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' [100%] Built target cpp make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles 0 make[2]: Leaving directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' running install_lib creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3 creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/fenics copying build/lib.linux-x86_64-3.7/fenics/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/fenics creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test copying build/lib.linux-x86_64-3.7/dolfin_utils/test/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test copying build/lib.linux-x86_64-3.7/dolfin_utils/test/paths.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test copying build/lib.linux-x86_64-3.7/dolfin_utils/test/skips.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test copying build/lib.linux-x86_64-3.7/dolfin_utils/test/fixtures.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert/abaqus.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert/meshconvert.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert/xml_writer.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin copying build/lib.linux-x86_64-3.7/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/parameter copying build/lib.linux-x86_64-3.7/dolfin/parameter/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/parameter creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/factorize.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/multistagescheme.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/multistagesolvers.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/rushlarsenschemes.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/ale.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/meshfunction.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/meshvaluecollection.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/subdomain.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/svgtools.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/ufl_util.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit copying build/lib.linux-x86_64-3.7/dolfin/jit/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit copying build/lib.linux-x86_64-3.7/dolfin/jit/jit.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit copying build/lib.linux-x86_64-3.7/dolfin/jit/pybind11jit.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/io copying build/lib.linux-x86_64-3.7/dolfin/io/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/io creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la copying build/lib.linux-x86_64-3.7/dolfin/la/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la copying build/lib.linux-x86_64-3.7/dolfin/la/solver.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/adaptivesolving.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/assembling.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/dirichletbc.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/errorcontrolgenerator.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/form.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/formmanipulations.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/interpolation.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/multimeshdirichletbc.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/norms.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/problem.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/projection.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/solvers.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/solving.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/argument.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/constant.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/expression.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/function.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/functionspace.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/jit.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/multimeshfunction.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/multimeshfunctionspace.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/specialfunctions.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common copying build/lib.linux-x86_64-3.7/dolfin/common/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common copying build/lib.linux-x86_64-3.7/dolfin/common/plotting.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common copying build/lib.linux-x86_64-3.7/dolfin/common/timer.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common copying build/lib.linux-x86_64-3.7/dolfin/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/fenics/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test/paths.py to paths.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test/skips.py to skips.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test/fixtures.py to fixtures.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert/abaqus.py to abaqus.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py to meshconvert.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert/xml_writer.py to xml_writer.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/parameter/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/factorize.py to factorize.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/multistagescheme.py to multistagescheme.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/multistagesolvers.py to multistagesolvers.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/rushlarsenschemes.py to rushlarsenschemes.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/ale.py to ale.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/meshfunction.py to meshfunction.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/meshvaluecollection.py to meshvaluecollection.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/subdomain.py to subdomain.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/svgtools.py to svgtools.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/ufl_util.py to ufl_util.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit/jit.py to jit.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit/pybind11jit.py to pybind11jit.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la/solver.py to solver.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/adaptivesolving.py to adaptivesolving.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/assembling.py to assembling.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/dirichletbc.py to dirichletbc.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/errorcontrolgenerator.py to errorcontrolgenerator.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/form.py to form.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/formmanipulations.py to formmanipulations.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/interpolation.py to interpolation.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/multimeshdirichletbc.py to multimeshdirichletbc.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/norms.py to norms.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/problem.py to problem.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/projection.py to projection.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/solvers.py to solvers.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/solving.py to solving.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/argument.py to argument.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/constant.py to constant.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/expression.py to expression.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/function.py to function.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/functionspace.py to functionspace.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/jit.py to jit.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/multimeshfunction.py to multimeshfunction.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/multimeshfunctionspace.py to multimeshfunctionspace.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/specialfunctions.py to specialfunctions.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common/plotting.py to plotting.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common/timer.py to timer.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/__init__.py to __init__.cpython-37.pyc running install_egg_info running egg_info creating fenics_dolfin.egg-info writing fenics_dolfin.egg-info/PKG-INFO writing dependency_links to fenics_dolfin.egg-info/dependency_links.txt writing requirements to fenics_dolfin.egg-info/requires.txt writing top-level names to fenics_dolfin.egg-info/top_level.txt writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfin.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' Copying fenics_dolfin.egg-info to /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/fenics_dolfin-2018.1.0.egg-info Skipping SOURCES.txt running install_scripts chrpath -d /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python*/dist-packages/dolfin/*.so sed -i "s/-D_FORTIFY_SOURCE=2//g" /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/dolfin.pc sed -i "s|-DNDEBUG||g" /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/dolfin.pc make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' debian/rules override_dh_install-indep make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions cd python/demo; \ python3 generate-demo-files.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/stokes-iterative/demo_stokes-iterative.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/singular-poisson/demo_singular-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/poisson/demo_poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/nonmatching-interpolation/demo_nonmatching-interpolation.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/nonlinear-poisson/demo_nonlinear-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/neumann-poisson/demo_neumann-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/mixed-poisson/demo_mixed-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/maxwell-eigenvalues/demo_maxwell-eigenvalues.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/hyperelasticity/demo_hyperelasticity.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/eigenvalue/demo_eigenvalue.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/cahn-hilliard/demo_cahn-hilliard.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/built-in-meshes/demo_built-in-meshes.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/biharmonic/demo_biharmonic.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/auto-adaptive-poisson/demo_auto-adaptive-poisson.py Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/stokes-iterative ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/singular-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/nonmatching-interpolation ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/nonlinear-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/neumann-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/mixed-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/maxwell-eigenvalues ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/hyperelasticity ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/eigenvalue ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/cahn-hilliard ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/built-in-meshes ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/biharmonic ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/auto-adaptive-poisson ... dh_install -X*.rst make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_install -O--buildsystem=cmake -Npython-dolfin -Ndolfin-doc -Ndolfin-bin dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_python3 -O--buildsystem=cmake I: dh_python3 tools:114: replacing shebang in debian/dolfin-bin/usr/bin/dolfin-plot I: dh_python3 tools:114: replacing shebang in debian/dolfin-bin/usr/bin/dolfin-order I: dh_python3 tools:114: replacing shebang in debian/dolfin-bin/usr/bin/dolfin-convert dh_installinit -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake debian/rules override_dh_compress make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_compress -X.py -X.cpp -X.h -X.pdf -X.ufl make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_fixperms chmod a-x debian/dolfin-doc/usr/share/dolfin/demo-python/*/*/*.py make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_fixperms -O--buildsystem=cmake -Npython-dolfin -Ndolfin-doc -Ndolfin-bin dh_missing -O--buildsystem=cmake debian/rules override_dh_dwz make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_dwz -Xcpp.cpython make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' debian/rules override_dh_strip make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_strip --package=libdolfin2018.1 --dbgsym-migration='libdolfin2017.2-dbg (<< 2017.2.0.post0-1~)' -Xpython dh_strip --package=python3-dolfin --dbgsym-migration='python3-dolfin-dbg (<< 2017.2.0.post0-1~)' -Xpython2 make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_makeshlibs -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info dpkg-shlibdeps: warning: debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyObject_ClearWeakRefs: it's probably a plugin dpkg-shlibdeps: warning: 129 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libslepc_real.so.3.10 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libboost_system.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libhdf5_openmpi.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libboost_chrono.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libboost_timer.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-x86_64-linux-gnu.so was not linked against libmpi_cxx.so.40 (it uses none of the library's symbols) dpkg-shlibdeps: warning: symbol pthread_create used by debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libccolamd.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libscotch-6.so (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libptscotcherr-6.so (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libamd.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libsuitesparseconfig.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against librt.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libboost_regex.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libcamd.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libboost_chrono.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against libcolamd.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0 was not linked against liblapack.so.3 (it uses none of the library's symbols) make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_installdeb -O--buildsystem=cmake debian/rules override_dh_gencontrol make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions echo "python3-petsc4py:Depends=python3-petsc4py (>= 3.10), python3-petsc4py (<< 3.11), python3-slepc4py (>= 3.10), python3-slepc4py (<< 3.11)" >> debian/python3-dolfin.substvars echo "python-petsc4py-alt:Depends=python3-petsc4py (>= 3.10), python3-petsc4py (<< 3.11), python3-slepc4py (>= 3.10), python3-slepc4py (<< 3.11)" >> debian/libdolfin-dev.substvars dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.10-dev | libpetsc3.10.3-dev, libslepc-real3.10-dev | libslepc3.10.1-dev" -Vfenics:Upstream-Version=2018.1 -Vfenics:Next-Upstream-Version=2018.2~ \ -Vpybind11:Upstream-Version=2.2.4 -Vpybind11:Next-Upstream-Version=2.2.5 dpkg-gencontrol: warning: package python-dolfin: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfin2018.1: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python3-dolfin: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-dolfin: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package libdolfin-dev: substitution variable ${python-petsc4py-alt:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfin-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfin-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfin2018.1: substitution variable ${python3:Depends} unused, but is defined make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'dolfin-doc' in '../dolfin-doc_2018.1.0.post1-16_all.deb'. dpkg-deb: building package 'python-dolfin' in '../python-dolfin_2018.1.0.post1-16_all.deb'. dpkg-deb: building package 'libdolfin2018.1-dbgsym' in '../libdolfin2018.1-dbgsym_2018.1.0.post1-16_amd64.deb'. dpkg-deb: building package 'dolfin-bin' in '../dolfin-bin_2018.1.0.post1-16_all.deb'. dpkg-deb: building package 'libdolfin-dev' in '../libdolfin-dev_2018.1.0.post1-16_amd64.deb'. dpkg-deb: building package 'python3-dolfin' in '../python3-dolfin_2018.1.0.post1-16_amd64.deb'. dpkg-deb: building package 'libdolfin2018.1' in '../libdolfin2018.1_2018.1.0.post1-16_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dolfin_2018.1.0.post1-16_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2208619 and its subdirectories I: Current time: Wed Dec 1 13:30:09 -12 2021 I: pbuilder-time-stamp: 1638408609