W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 15 15:09:32 -12 2021 I: pbuilder-time-stamp: 1610766572 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastx-toolkit_0.0.14-6.dsc] I: copying [./fastx-toolkit_0.0.14.orig.tar.gz] I: copying [./fastx-toolkit_0.0.14-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Sep 23 03:15:49 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.14-6.dsc dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.14 dpkg-source: info: unpacking fastx-toolkit_0.0.14.orig.tar.gz dpkg-source: info: unpacking fastx-toolkit_0.0.14-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying Q_option_documentation.patch dpkg-source: info: applying reproducible_build.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18588/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18588' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NYp6wgtNni/pbuilderrc_L81m --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NYp6wgtNni/b1 --logfile b1/build.log fastx-toolkit_0.0.14-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 4.19.0-13-amd64 #1 SMP Debian 4.19.160-2 (2020-11-28) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 20:26 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/18588/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libtool, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libtool; however: Package libtool is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libgtextutils-dev; however: Package libgtextutils-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libgd-graph-perl; however: Package libgd-graph-perl is not installed. pbuilder-satisfydepends-dummy depends on libperlio-gzip-perl; however: Package libperlio-gzip-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgd-graph-perl{a} libgd-perl{a} libgd-text-perl{a} libgd3{a} libglib2.0-0{a} libgtextutils-dev{a} libgtextutils0v5{a} libicu63{a} libjbig0{a} libjpeg62-turbo{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libperlio-gzip-perl{a} libpipeline1{a} libpng16-16{a} libsigsegv2{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} m4{a} man-db{a} pkg-config{a} po-debconf{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 24.3 MB of archives. After unpacking 83.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 help2man amd64 1.47.8 [177 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u1 [271 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u1 [294 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u1 [757 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libgd-perl amd64 2.71-2 [140 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libgd-text-perl all 0.86-9 [41.4 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libgd-graph-perl all 1.54~ds-2 [125 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libgtextutils0v5 amd64 0.7-6 [19.4 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libgtextutils-dev amd64 0.7-6 [24.5 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libperlio-gzip-perl amd64 0.19-1+b5 [17.4 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Fetched 24.3 MB in 1s (42.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../06-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../09-libmagic1_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../12-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../13-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../24-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../26-libglib2.0-0_2.58.3-2+deb10u2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... 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Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up help2man (1.47.8) ... Setting up libgtextutils-dev:amd64 (0.7-6) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up po-debconf (1.0.21) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up libgd-perl (2.71-2) ... Setting up libgd-text-perl (0.86-9) ... Setting up libgd-graph-perl (1.54~ds-2) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/fastx-toolkit-0.0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package fastx-toolkit dpkg-buildpackage: info: source version 0.0.14-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/fastx-toolkit.substvars debian/files rm -fr -- debian/fastx-toolkit/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:20: installing 'config/compile' configure.ac:22: installing 'config/config.guess' configure.ac:22: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing './INSTALL' src/fasta_formatter/Makefile.am: installing 'config/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/fastx-toolkit-0.0.14' ./reconf - libtoolize. - aclocal. - autoconf. - autoheader. - automake. dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long int... yes checking for ISO C++ TR1 include files... yes checking whether g++ supports C++11 features by default... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTEXTUTILS... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/libfastx/Makefile config.status: creating src/fastx_clipper/Makefile config.status: creating src/fastq_to_fasta/Makefile config.status: creating src/fastx_quality_stats/Makefile config.status: creating src/fastq_quality_converter/Makefile config.status: creating src/fastx_trimmer/Makefile config.status: creating src/fastq_quality_filter/Makefile config.status: creating src/fastq_quality_trimmer/Makefile config.status: creating src/fastx_artifacts_filter/Makefile config.status: creating src/fastx_reverse_complement/Makefile config.status: creating src/fastx_collapser/Makefile config.status: creating src/fastx_uncollapser/Makefile config.status: creating src/seqalign_test/Makefile config.status: creating src/fasta_formatter/Makefile config.status: creating src/fasta_nucleotide_changer/Makefile config.status: creating src/fastx_renamer/Makefile config.status: creating src/fastq_masker/Makefile config.status: creating galaxy/Makefile config.status: creating galaxy/tools/Makefile config.status: creating galaxy/tools/fastx_toolkit/Makefile config.status: creating galaxy/test-data/Makefile config.status: creating galaxy/static/Makefile config.status: creating galaxy/static/fastx_icons/Makefile config.status: creating galaxy/tool-data/Makefile config.status: creating scripts/Makefile config.status: creating build_scripts/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' dh_auto_build make -j15 make[1]: Entering directory '/build/fastx-toolkit-0.0.14' make all-recursive make[2]: Entering directory '/build/fastx-toolkit-0.0.14' Making all in m4 make[3]: Entering directory '/build/fastx-toolkit-0.0.14/m4' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/m4' Making all in src make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src' Making all in libfastx make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/libfastx' gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o chomp.o chomp.c gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx.o fastx.c gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_args.o fastx_args.c g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp rm -f libfastx.a ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/libfastx' Making all in fastx_clipper make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat 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fastx_quality_stats make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_quality_stats.o fastx_quality_stats.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat 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'/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' Making all in fastq_quality_filter make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_filter.o fastq_quality_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 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'/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security 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'/build/fastx-toolkit-0.0.14/src/fasta_formatter' Making all in fasta_nucleotide_changer make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_nucleotide_changer.o fasta_nucleotide_changer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' Making all in fastx_renamer make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_renamer.o fastx_renamer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' Making all in fastq_masker make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_masker.o fastq_masker.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_masker fastq_masker.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_masker fastq_masker.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src' Making all in doc make[3]: Entering directory '/build/fastx-toolkit-0.0.14/doc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/doc' Making all in galaxy make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy' Making all in tools make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools' Making all in fastx_toolkit make[5]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[5]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools' make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools' Making all in test-data make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/test-data' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/test-data' Making all in static make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static' Making all in fastx_icons make[5]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[5]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static' make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static' Making all in tool-data make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tool-data' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tool-data' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy' Making all in scripts make[3]: Entering directory '/build/fastx-toolkit-0.0.14/scripts' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/scripts' Making all in build_scripts make[3]: Entering directory '/build/fastx-toolkit-0.0.14/build_scripts' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/build_scripts' make[3]: Entering directory '/build/fastx-toolkit-0.0.14' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14' make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' dh_auto_test make -j15 check VERBOSE=1 make[1]: Entering directory '/build/fastx-toolkit-0.0.14' Making check in m4 make[2]: Entering directory '/build/fastx-toolkit-0.0.14/m4' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/m4' Making check in src make[2]: Entering directory '/build/fastx-toolkit-0.0.14/src' Making check in libfastx make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/libfastx' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/libfastx' Making check in fastx_clipper make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' Making check in fastx_trimmer make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' Making check in fastx_quality_stats make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' Making check in fastq_quality_converter make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' Making check in fastq_to_fasta make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' Making check in fastq_quality_filter make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' Making check in fastq_quality_trimmer make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' Making check in fastx_artifacts_filter make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' Making check in fastx_reverse_complement make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' Making check in fastx_collapser make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' Making check in fastx_uncollapser make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' Making check in seqalign_test make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/seqalign_test' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/seqalign_test' Making check in fasta_formatter make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' Making check in fasta_nucleotide_changer make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' Making check in fastx_renamer make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' Making check in fastq_masker make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/src' Making check in doc make[2]: Entering directory '/build/fastx-toolkit-0.0.14/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/doc' Making check in galaxy make[2]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy' Making check in tools make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools' Making check in fastx_toolkit make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools' Making check in test-data make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/test-data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/test-data' Making check in static make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static' Making check in fastx_icons make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static' Making check in tool-data make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tool-data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tool-data' make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy' Making check in scripts make[2]: Entering directory '/build/fastx-toolkit-0.0.14/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/scripts' Making check in build_scripts make[2]: Entering directory '/build/fastx-toolkit-0.0.14/build_scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/build_scripts' make[2]: Entering directory '/build/fastx-toolkit-0.0.14' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14' make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep rm -f -- debian/fastx-toolkit.substvars rm -fr -- debian/.debhelper/generated/fastx-toolkit/ debian/fastx-toolkit/ debian/tmp/ dh_auto_install install -d /build/fastx-toolkit-0.0.14/debian/fastx-toolkit make -j1 install DESTDIR=/build/fastx-toolkit-0.0.14/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/fastx-toolkit-0.0.14' Making install in m4 make[2]: Entering directory '/build/fastx-toolkit-0.0.14/m4' make[3]: Entering directory '/build/fastx-toolkit-0.0.14/m4' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/aclocal' /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_compile_stdcxx_11.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/aclocal' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/m4' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/m4' Making install in src make[2]: Entering directory '/build/fastx-toolkit-0.0.14/src' Making install in libfastx make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/libfastx' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/libfastx' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/libfastx' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/libfastx' Making install in fastx_clipper make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_clipper /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_clipper make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' Making install in fastx_trimmer make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_trimmer /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_trimmer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' Making install in fastx_quality_stats make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_quality_stats /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_quality_stats make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' Making install in fastq_quality_converter make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_converter /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_converter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' Making install in fastq_to_fasta make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_to_fasta /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_to_fasta make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' Making install in fastq_quality_filter make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_filter /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_filter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' Making install in fastq_quality_trimmer make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' Making install in fastx_artifacts_filter make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' Making install in fastx_reverse_complement make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_reverse_complement /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_reverse_complement make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' Making install in fastx_collapser make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_collapser /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_collapser make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' Making install in fastx_uncollapser make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_uncollapser /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_uncollapser make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' Making install in seqalign_test make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/seqalign_test' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/seqalign_test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/seqalign_test' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/seqalign_test' Making install in fasta_formatter make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_formatter /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_formatter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' Making install in fasta_nucleotide_changer make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' Making install in fastx_renamer make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_renamer /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_renamer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' Making install in fastq_masker make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_masker /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_masker make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/src' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/src' Making install in doc make[2]: Entering directory '/build/fastx-toolkit-0.0.14/doc' make[3]: Entering directory '/build/fastx-toolkit-0.0.14/doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/doc' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/doc' Making install in galaxy make[2]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy' Making install in tools make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools' Making install in fastx_toolkit make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[5]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools' make[5]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tools' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools' make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tools' Making install in test-data make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/test-data' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/test-data' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/test-data' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/test-data' Making install in static make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static' Making install in fastx_icons make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[5]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static' make[5]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/static' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static' make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/static' Making install in tool-data make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tool-data' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy/tool-data' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tool-data' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy/tool-data' make[3]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/galaxy' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy' make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/galaxy' Making install in scripts make[2]: Entering directory '/build/fastx-toolkit-0.0.14/scripts' make[3]: Entering directory '/build/fastx-toolkit-0.0.14/scripts' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/scripts' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/scripts' Making install in build_scripts make[2]: Entering directory '/build/fastx-toolkit-0.0.14/build_scripts' make[3]: Entering directory '/build/fastx-toolkit-0.0.14/build_scripts' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14/build_scripts' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14/build_scripts' make[2]: Entering directory '/build/fastx-toolkit-0.0.14' make[3]: Entering directory '/build/fastx-toolkit-0.0.14' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/fastx-toolkit-0.0.14' make[2]: Leaving directory '/build/fastx-toolkit-0.0.14' make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' rm -f debian/fastx-toolkit.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/fastx-toolkit-0.0.14' dh_install install -d debian/.debhelper/generated/fastx-toolkit rm --recursive /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/aclocal make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' dh_installdocs install -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./README debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit cd './galaxy/test-data/..' && find 'test-data' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./debian/README.test debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./debian/tests/run-unit-test debian/fastx-toolkit/usr/share/doc/fastx-toolkit chown -R 0:0 debian/fastx-toolkit/usr/share/doc chmod -R u\+rw,go=rX debian/fastx-toolkit/usr/share/doc install -p -m0644 debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian install -p -m0644 debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright rm -f debian/fastx-toolkit.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/fastx-toolkit-0.0.14' dh_installchangelogs -k NEWS install -p -m0644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian install -p -m0644 debian/NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.Debian install -p -m0644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' rm -f debian/fastx-toolkit.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/fastx-toolkit-0.0.14' mkdir -p /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1 # The name strings are obtained from # http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools") # and # http://hannonlab.cshl.edu/fastx_toolkit/commandline.html help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='changes the width of sequences line in a FASTA file' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convets FASTA sequences from/to RNA/DNA' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name="Masks nucleotides with 'N' (or other character) based on quality" \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_masker > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 # hmmmm: The tool `fasta_quality_converter` was NOT described at the URLs above help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Converts sequences based on quality' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Filters sequences based on quality' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 dh_installman debian/fastq_quality_trimmer.1 install -p -m0644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 > debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 > debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1.dh-new mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 mv debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 mv debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 mv debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convert FASTQ files to FASTA files' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTQ/A Artifacts Filter' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Clipper' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Collapser' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTX Statistics' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Renamer' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTQ/A Reverse Complement' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Trimmer' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Uncollapser' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1 # Perl scripts add the full path to usage advise which needs to be removed # The script fasta_clipping_histogram.pl does not feature a '-h' option help2man --no-info --no-discard-stderr --version-string='0.0.14' -h '' \ --name='Create a Linker Clipping Information Histogram' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \ > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTX Barcode Splitter' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \ > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Solexa-Quality BoxPlot plotter' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Nucleotide Distribution Plotter' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Nucleotide Distribution Plotter' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 for man in `find /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done find: '*.1': No such file or directory /bin/sh: 1: cannot create /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1: Is a directory make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' dh_lintian install -d debian/fastx-toolkit/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/fastx-toolkit/usr/share/lintian/overrides/fastx-toolkit dh_perl (grep -a -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl:any) > debian/fastx-toolkit.substvars.new mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars dh_link rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS ln -s changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS dh_strip_nondeterminism dh_compress cd debian/fastx-toolkit chmod a-x usr/share/doc/fastx-toolkit/NEWS.Debian usr/share/doc/fastx-toolkit/README usr/share/doc/fastx-toolkit/changelog usr/share/doc/fastx-toolkit/changelog.Debian usr/share/doc/fastx-toolkit/test-data/Makefile usr/share/doc/fastx-toolkit/test-data/Makefile.in usr/share/doc/fastx-toolkit/test-data/fasta_formatter1.fasta usr/share/doc/fastx-toolkit/test-data/fasta_formatter1.out usr/share/doc/fastx-toolkit/test-data/fasta_formatter2.out usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_uncollapser.1 gzip -9nf usr/share/doc/fastx-toolkit/NEWS.Debian usr/share/doc/fastx-toolkit/README usr/share/doc/fastx-toolkit/changelog usr/share/doc/fastx-toolkit/changelog.Debian usr/share/doc/fastx-toolkit/test-data/Makefile usr/share/doc/fastx-toolkit/test-data/Makefile.in usr/share/doc/fastx-toolkit/test-data/fasta_formatter1.fasta usr/share/doc/fastx-toolkit/test-data/fasta_formatter1.out usr/share/doc/fastx-toolkit/test-data/fasta_formatter2.out usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_uncollapser.1 cd '/build/fastx-toolkit-0.0.14' rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz ln -s changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz dh_fixperms find debian/fastx-toolkit -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastx-toolkit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastx-toolkit/usr/share/doc -type f -a -true -a ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_strip install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_masker debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23/aa87ed59423944e819f71f044c36ca3da0986e.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23/aa87ed59423944e819f71f044c36ca3da0986e.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23/aa87ed59423944e819f71f044c36ca3da0986e.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23/aa87ed59423944e819f71f044c36ca3da0986e.debug debian/fastx-toolkit/usr/bin/fastq_masker install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_renamer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1d/0f45b44bc980574a4372add3f9aa5d54363c03.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1d/0f45b44bc980574a4372add3f9aa5d54363c03.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1d/0f45b44bc980574a4372add3f9aa5d54363c03.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1d/0f45b44bc980574a4372add3f9aa5d54363c03.debug debian/fastx-toolkit/usr/bin/fastx_renamer install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/32 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/32/067c5adcdffe5f28e60d4f3c08e7b6344c4ec1.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/32/067c5adcdffe5f28e60d4f3c08e7b6344c4ec1.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/32/067c5adcdffe5f28e60d4f3c08e7b6344c4ec1.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/32/067c5adcdffe5f28e60d4f3c08e7b6344c4ec1.debug debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fasta_formatter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ac/0c8681dd48546db4a80aeb4624774872fa3f9f.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ac/0c8681dd48546db4a80aeb4624774872fa3f9f.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ac/0c8681dd48546db4a80aeb4624774872fa3f9f.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ac/0c8681dd48546db4a80aeb4624774872fa3f9f.debug debian/fastx-toolkit/usr/bin/fasta_formatter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fb/0c77d11596df94a0d39df98bd24e13b364686e.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fb/0c77d11596df94a0d39df98bd24e13b364686e.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fb/0c77d11596df94a0d39df98bd24e13b364686e.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fb/0c77d11596df94a0d39df98bd24e13b364686e.debug debian/fastx-toolkit/usr/bin/fastx_uncollapser install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_collapser debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/4d/6ca85cc8451e58ea12807cd917fe746be8f1e3.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/4d/6ca85cc8451e58ea12807cd917fe746be8f1e3.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/4d/6ca85cc8451e58ea12807cd917fe746be8f1e3.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/4d/6ca85cc8451e58ea12807cd917fe746be8f1e3.debug debian/fastx-toolkit/usr/bin/fastx_collapser install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/13 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/13/02510ca3cdba44f245e495aaf5a0b8cd4381fd.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/13/02510ca3cdba44f245e495aaf5a0b8cd4381fd.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/13/02510ca3cdba44f245e495aaf5a0b8cd4381fd.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/13/02510ca3cdba44f245e495aaf5a0b8cd4381fd.debug debian/fastx-toolkit/usr/bin/fastx_reverse_complement install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/e9 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/e9/1af4a5874b1df8dc1e820f9d0e1d258d5fd9e3.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/e9/1af4a5874b1df8dc1e820f9d0e1d258d5fd9e3.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/e9/1af4a5874b1df8dc1e820f9d0e1d258d5fd9e3.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/e9/1af4a5874b1df8dc1e820f9d0e1d258d5fd9e3.debug debian/fastx-toolkit/usr/bin/fastx_artifacts_filter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/5c objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/5c/025a01b6a5a7a674640b77688df3becaf96051.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/5c/025a01b6a5a7a674640b77688df3becaf96051.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/5c/025a01b6a5a7a674640b77688df3becaf96051.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/5c/025a01b6a5a7a674640b77688df3becaf96051.debug debian/fastx-toolkit/usr/bin/fastq_quality_trimmer install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/6d/9d794c2e621c1e6cb3b1adc998cefb22e72a68.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/6d/9d794c2e621c1e6cb3b1adc998cefb22e72a68.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/6d/9d794c2e621c1e6cb3b1adc998cefb22e72a68.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/6d/9d794c2e621c1e6cb3b1adc998cefb22e72a68.debug debian/fastx-toolkit/usr/bin/fastq_quality_filter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/88/5c78026f293b8f76d71b3baf75f5af348daaaf.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/88/5c78026f293b8f76d71b3baf75f5af348daaaf.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/88/5c78026f293b8f76d71b3baf75f5af348daaaf.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/88/5c78026f293b8f76d71b3baf75f5af348daaaf.debug debian/fastx-toolkit/usr/bin/fastq_to_fasta install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/de/b1588ff2f754405857c4aa2db4407277611874.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/de/b1588ff2f754405857c4aa2db4407277611874.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/de/b1588ff2f754405857c4aa2db4407277611874.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/de/b1588ff2f754405857c4aa2db4407277611874.debug debian/fastx-toolkit/usr/bin/fastq_quality_converter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8f objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8f/ccfbbb4dffb86eeccb885a00f52f978f16f732.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8f/ccfbbb4dffb86eeccb885a00f52f978f16f732.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8f/ccfbbb4dffb86eeccb885a00f52f978f16f732.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8f/ccfbbb4dffb86eeccb885a00f52f978f16f732.debug debian/fastx-toolkit/usr/bin/fastx_quality_stats install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c3 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_trimmer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c3/ba3cdf424ffcb86e567356bca7b7b7eb6677b4.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c3/ba3cdf424ffcb86e567356bca7b7b7eb6677b4.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c3/ba3cdf424ffcb86e567356bca7b7b7eb6677b4.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c3/ba3cdf424ffcb86e567356bca7b7b7eb6677b4.debug debian/fastx-toolkit/usr/bin/fastx_trimmer install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7d objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_clipper debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7d/c77fb3b3a46012d4756fbfb31ab4c5bebd1a54.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7d/c77fb3b3a46012d4756fbfb31ab4c5bebd1a54.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7d/c77fb3b3a46012d4756fbfb31ab4c5bebd1a54.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7d/c77fb3b3a46012d4756fbfb31ab4c5bebd1a54.debug debian/fastx-toolkit/usr/bin/fastx_clipper install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/share/doc ln -s fastx-toolkit debian/.debhelper/fastx-toolkit/dbgsym-root/usr/share/doc/fastx-toolkit-dbgsym dh_makeshlibs rm -f debian/fastx-toolkit/DEBIAN/shlibs dh_shlibdeps install -d debian/fastx-toolkit/DEBIAN dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_masker dh_installdeb dh_gencontrol echo misc:Depends= >> debian/fastx-toolkit.substvars echo misc:Pre-Depends= >> debian/fastx-toolkit.substvars install -d debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN dpkg-gencontrol -pfastx-toolkit -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/.debhelper/fastx-toolkit/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=fastx-toolkit-dbgsym "-DDepends=fastx-toolkit (= \${binary:Version})" "-DDescription=debug symbols for fastx-toolkit" "-DBuild-Ids=1302510ca3cdba44f245e495aaf5a0b8cd4381fd 1d0f45b44bc980574a4372add3f9aa5d54363c03 23aa87ed59423944e819f71f044c36ca3da0986e 32067c5adcdffe5f28e60d4f3c08e7b6344c4ec1 4d6ca85cc8451e58ea12807cd917fe746be8f1e3 5c025a01b6a5a7a674640b77688df3becaf96051 6d9d794c2e621c1e6cb3b1adc998cefb22e72a68 7dc77fb3b3a46012d4756fbfb31ab4c5bebd1a54 885c78026f293b8f76d71b3baf75f5af348daaaf 8fccfbbb4dffb86eeccb885a00f52f978f16f732 ac0c8681dd48546db4a80aeb4624774872fa3f9f c3ba3cdf424ffcb86e567356bca7b7b7eb6677b4 deb1588ff2f754405857c4aa2db4407277611874 e91af4a5874b1df8dc1e820f9d0e1d258d5fd9e3 fb0c77d11596df94a0d39df98bd24e13b364686e" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package fastx-toolkit: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/control dpkg-gencontrol -pfastx-toolkit -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit -UMulti-Arch dpkg-gencontrol: warning: package fastx-toolkit: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/fastx-toolkit/DEBIAN/control chown 0:0 -- debian/fastx-toolkit/DEBIAN/control dh_md5sums cd debian/fastx-toolkit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/fastx-toolkit/DEBIAN/md5sums chown 0:0 -- debian/fastx-toolkit/DEBIAN/md5sums cd debian/.debhelper/fastx-toolkit/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/fastx-toolkit .. dpkg-deb --build debian/.debhelper/fastx-toolkit/dbgsym-root .. dpkg-deb: building package 'fastx-toolkit' in '../fastx-toolkit_0.0.14-6_amd64.deb'. dpkg-deb: building package 'fastx-toolkit-dbgsym' in '../fastx-toolkit-dbgsym_0.0.14-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fastx-toolkit_0.0.14-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18588 and its subdirectories I: Current time: Fri Jan 15 15:11:10 -12 2021 I: pbuilder-time-stamp: 1610766670