I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 3 03:32:05 -12 2021 I: pbuilder-time-stamp: 1625326325 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ffindex_0.9.9.9-2.dsc] I: copying [./ffindex_0.9.9.9.orig.tar.gz] I: copying [./ffindex_0.9.9.9-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Mar 9 19:38:25 2019 -12 gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 gpgv: issuer "osallou@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ffindex_0.9.9.9-2.dsc dpkg-source: info: extracting ffindex in ffindex-0.9.9.9 dpkg-source: info: unpacking ffindex_0.9.9.9.orig.tar.gz dpkg-source: info: unpacking ffindex_0.9.9.9-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying basename.patch dpkg-source: info: applying cross.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/58913/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c118fce15109418faa98f5c98a4cc19e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='58913' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.JkvHmHlZqb/pbuilderrc_Wx8j --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.JkvHmHlZqb/b1 --logfile b1/build.log ffindex_0.9.9.9-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 20 20:26 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/58913/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), help2man, libopenmpi-dev, openmpi-bin, cmake (>= 3.11), chrpath, pkg-config dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. pbuilder-satisfydepends-dummy depends on openmpi-bin; however: Package openmpi-bin is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.11); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbsd0{a} libcroco3{a} libcurl4{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} liblocale-gettext-perl{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libprocps7{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} librdmacm1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 37.5 MB of archives. After unpacking 142 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libarchive13 amd64 3.3.3-4+deb10u1 [313 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 help2man amd64 1.47.8 [177 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Fetched 37.5 MB in 1s (62.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Selecting previously unselected package libltdl-dev:amd64. Preparing to unpack .../79-libltdl-dev_2.4.6-9_amd64.deb ... Unpacking libltdl-dev:amd64 (2.4.6-9) ... Selecting previously unselected package libhwloc-dev:amd64. Preparing to unpack .../80-libhwloc-dev_1.11.12-3_amd64.deb ... Unpacking libhwloc-dev:amd64 (1.11.12-3) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../81-libpciaccess0_0.14-1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.14-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../82-ocl-icd-libopencl1_2.2.12-2_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.12-2) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../83-libhwloc-plugins_1.11.12-3_amd64.deb ... Unpacking libhwloc-plugins:amd64 (1.11.12-3) ... Selecting previously unselected package libnl-3-dev:amd64. Preparing to unpack .../84-libnl-3-dev_3.4.0-1_amd64.deb ... Unpacking libnl-3-dev:amd64 (3.4.0-1) ... Selecting previously unselected package libnl-route-3-dev:amd64. Preparing to unpack .../85-libnl-route-3-dev_3.4.0-1_amd64.deb ... Unpacking libnl-route-3-dev:amd64 (3.4.0-1) ... Selecting previously unselected package libibverbs-dev:amd64. Preparing to unpack .../86-libibverbs-dev_22.1-1_amd64.deb ... Unpacking libibverbs-dev:amd64 (22.1-1) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../87-libpmix2_3.1.2-3_amd64.deb ... Unpacking libpmix2:amd64 (3.1.2-3) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../88-libopenmpi3_3.1.3-11_amd64.deb ... Unpacking libopenmpi3:amd64 (3.1.3-11) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../89-openmpi-common_3.1.3-11_all.deb ... Unpacking openmpi-common (3.1.3-11) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../90-openmpi-bin_3.1.3-11_amd64.deb ... 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Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29-6) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u1) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up chrpath (0.16-2+b1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:amd64 (3.3.3-4+deb10u1) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up help2man (1.47.8) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:amd64 (22.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up ibverbs-providers:amd64 (22.1-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up cmake (3.13.4-1) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/ffindex-0.9.9.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ffindex dpkg-buildpackage: info: source version 0.9.9.9-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh clean dh_auto_clean make -j15 clean make[1]: Entering directory '/build/ffindex-0.9.9.9' make -C src clean make[2]: Entering directory '/build/ffindex-0.9.9.9/src' rm -f ffindex_apply ffindex_from_fasta ffindex_get ffindex_build ffindex_modify ffindex_unpack ffindex_from_tsv ffindex_apply_mpi ffindex.o ffindex_posix_search.o ffutil.o libffindex.so libffindex.so.2.0.2 libffindex.a \ libffindex.so libffindex.so.2.0.2 libffindex.a \ ffindex_build.o ffindex_get.o ffindex_modify.o ffindex_from_fasta.o ffindex_apply_mpi.o \ ffindex_apply.o ffindex_from_tsv.o ffindex_unpack.o ffindex_posix_search.o ffindex_apply_mpi_spawn.o \ make[2]: Leaving directory '/build/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules override_dh_clean make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule rm -f ffindex_apply.1 ffindex_build.1 ffindex_from_fasta.1 ffindex_get.1 ffindex_modify.1 ffindex_unpack.1 ffindex_apply_mpi.1 ffindex_from_tsv.1 ffindex_apply_mpi.1 dh_clean make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules build debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ffindex-0.9.9.9' make -C src all make[2]: Entering directory '/build/ffindex-0.9.9.9/src' cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex.o ffindex.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_posix_search.o ffindex_posix_search.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffutil.o ffutil.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_from_fasta.o ffindex_from_fasta.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_get.o ffindex_get.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_build.o ffindex_build.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_modify.o ffindex_modify.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_unpack.o ffindex_unpack.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_from_tsv.o ffindex_from_tsv.c cc -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_MPI -c ffindex_apply_mpi.c -o ffindex_apply_mpi.o ffindex.c: In function 'ffindex_write': ffindex.c:577:3: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(index_file), ftell(index_file)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,-soname,libffindex.so.2.0.2 -shared -o libffindex.so.2.0.2 ffindex.o ffindex_posix_search.o ffutil.o ar rcs libffindex.a ffindex.o ffindex_posix_search.o ffutil.o ln -sf libffindex.so.2.0.2 libffindex.so cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c ffindex_apply_mpi.c -o ffindex_apply.o cc -o ffindex_from_fasta ffindex_from_fasta.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_get ffindex_get.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_build ffindex_build.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_modify ffindex_modify.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_unpack ffindex_unpack.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_from_tsv ffindex_from_tsv.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_MPI -o ffindex_apply_mpi ffindex_apply_mpi.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -o ffindex_apply ffindex_apply.o -Wl,-z,relro -Wl,-z,now -L. -lffindex make[2]: Leaving directory '/build/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_auto_test -- FFINDEX_MAX_INDEX_ENTRIES=20000 check make -j15 test FFINDEX_MAX_INDEX_ENTRIES=20000 check make[2]: Entering directory '/build/ffindex-0.9.9.9' make[2]: 'test' is up to date. make -C src check make[3]: Entering directory '/build/ffindex-0.9.9.9/src' rm -f /tmp/test.data /tmp/test.ffindex LD_LIBRARY_PATH=".:" ./ffindex_build -s /tmp/test.data /tmp/test.ffindex ../test/data ../test/data2 LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex a b foo | tee /tmp/test.out a bb fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_modify -u /tmp/test.ffindex b LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex a b foo | tee /tmp/test-unlink.out ffindex_get.c:152 ffindex_get key not found in index: b: No such file or directory a fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_build -a -s /tmp/test.data /tmp/test.ffindex ../test/testfile ======== compare results ========= diff /tmp/test.out test.should diff /tmp/test-unlink.out test-unlink.should ======== error handling ========== LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex nonexistquery b foo || echo ffindex_get.c:152 ffindex_get key not found in index: nonexistquery: No such file or directory ffindex_get.c:152 ffindex_get key not found in index: b: No such file or directory fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_get /nonexist/data /tmp/test.ffindex a foo || echo /nonexist/data: No such file or directory ffindex_get.c:80 ffindex_index_db_open failed: ./ffindex_get: Invalid argument LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /nonexist/index a foo || echo /nonexist/index: No such file or directory ffindex_get.c:80 ffindex_index_db_open failed: ./ffindex_get: Invalid argument make[3]: Leaving directory '/build/ffindex-0.9.9.9/src' make[2]: Leaving directory '/build/ffindex-0.9.9.9' make[1]: Leaving directory '/build/ffindex-0.9.9.9' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh binary dh_testroot dh_prep dh_auto_install make -j15 install DESTDIR=/build/ffindex-0.9.9.9/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ffindex-0.9.9.9' make -C src install make[2]: Entering directory '/build/ffindex-0.9.9.9/src' mkdir -p /build/ffindex-0.9.9.9/debian/tmp/usr/bin mkdir -p /build/ffindex-0.9.9.9/debian/tmp/usr/lib mkdir -p /build/ffindex-0.9.9.9/debian/tmp/usr/include install ffindex_get /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_get install ffindex_build /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_build install ffindex_modify /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_modify install ffindex_from_fasta /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_from_fasta install ffindex_from_tsv /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_from_tsv install ffindex_apply /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_apply install ffindex_unpack /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_unpack install libffindex.so.2.0.2 /build/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so.2.0.2 install libffindex.a /build/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.a ln -sf libffindex.so.2.0.2 /build/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so.0 ln -sf libffindex.so.2.0.2 /build/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so install ffindex.h /build/ffindex-0.9.9.9/debian/tmp/usr/include/ffindex.h install ffutil.h /build/ffindex-0.9.9.9/debian/tmp/usr/include/ffutil.h install ffindex_posix_search.h /build/ffindex-0.9.9.9/debian/tmp/usr/include/ffindex_posix_search.h install ffindex_apply_mpi /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_apply_mpi make[2]: Leaving directory '/build/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules override_dh_install make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_install find debian -name ffindex_apply_mpi -exec chrpath --delete \{\} \; make[1]: Leaving directory '/build/ffindex-0.9.9.9' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_installexamples cp -aR test /build/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; cp ./src/test.should /build/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; cp ./src/test-unlink.should /build/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules override_dh_installman make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_apply" --version-option="-v" 'debian/tmp/usr/bin/ffindex_apply' -o 'ffindex_apply.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_build" --version-option="-v" 'debian/tmp/usr/bin/ffindex_build' -o 'ffindex_build.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_from_fasta" --version-option="-v" 'debian/tmp/usr/bin/ffindex_from_fasta' -o 'ffindex_from_fasta.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_get" --version-option="-v" 'debian/tmp/usr/bin/ffindex_get' -o 'ffindex_get.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_modify" --version-option="-v" 'debian/tmp/usr/bin/ffindex_modify' -o 'ffindex_modify.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_unpack" --version-option="-v" 'debian/tmp/usr/bin/ffindex_unpack' -o 'ffindex_unpack.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_apply_mpi" --version-option="-v" 'debian/tmp/usr/bin/ffindex_apply_mpi' -o 'ffindex_apply_mpi.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_from_tsv" --version-option="-v" 'debian/tmp/usr/bin/ffindex_from_tsv' -o 'ffindex_from_tsv.1' --include debian/man_notes.nroff dh_installman make[1]: Leaving directory '/build/ffindex-0.9.9.9' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ffindex' in '../ffindex_0.9.9.9-2_amd64.deb'. dpkg-deb: building package 'libffindex0-dbgsym' in '../libffindex0-dbgsym_0.9.9.9-2_amd64.deb'. dpkg-deb: building package 'libffindex0' in '../libffindex0_0.9.9.9-2_amd64.deb'. dpkg-deb: building package 'libffindex0-dev' in '../libffindex0-dev_0.9.9.9-2_amd64.deb'. dpkg-deb: building package 'ffindex-dbgsym' in '../ffindex-dbgsym_0.9.9.9-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ffindex_0.9.9.9-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/58913 and its subdirectories I: Current time: Sat Jul 3 03:32:39 -12 2021 I: pbuilder-time-stamp: 1625326359