I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 14 18:54:38 -12 2022 I: pbuilder-time-stamp: 1647327278 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-popgen_2.4.1-1.dsc] I: copying [./libbpp-popgen_2.4.1.orig.tar.gz] I: copying [./libbpp-popgen_2.4.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Aug 22 08:31:55 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-popgen_2.4.1-1.dsc dpkg-source: info: extracting libbpp-popgen in libbpp-popgen-2.4.1 dpkg-source: info: unpacking libbpp-popgen_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-popgen_2.4.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/60670/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='308b560e87e24f4990ffb05e4ac1f118' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='60670' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.4efQmteQie/pbuilderrc_iAey --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.4efQmteQie/b1 --logfile b1/build.log libbpp-popgen_2.4.1-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.9.0-0.bpo.5-amd64 #1 SMP Debian 5.9.15-1~bpo10+1 (2020-12-31) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Mar 12 02:47 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/60670/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.80), libbpp-core-dev (>= 2.4.1), libbpp-seq-dev (>= 2.4.1) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.80); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbpp-core-dev (>= 2.4.1); however: Package libbpp-core-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev (>= 2.4.1); however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbpp-core-dev{a} libbpp-core4{a} libbpp-seq-dev{a} libbpp-seq12{a} libbsd0{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 31.4 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libarchive13 amd64 3.3.3-4+deb10u1 [313 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u4 [1538 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u4 [89.8 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u4 [224 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u1 [331 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 d-shlibs all 0.84 [17.2 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libbpp-core4 amd64 2.4.1-3 [623 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libbpp-core-dev amd64 2.4.1-3 [950 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libbpp-seq12 amd64 2.4.1-3 [534 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libbpp-seq-dev amd64 2.4.1-3 [766 kB] Fetched 31.4 MB in 0s (78.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../06-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../07-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../08-lsb-base_10.2019051400_all.deb ... 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Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/libbpp-popgen-2.4.1 -B/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-popgen-2.4.1 /build/libbpp-popgen-2.4.1/src /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake --color= cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-popgen-2.4.1 /build/libbpp-popgen-2.4.1/src /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake --color= Scanning dependencies of target bpp-popgen-shared make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build Scanning dependencies of target bpp-popgen-static make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o [ 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src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ 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/build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/BasicAlleleInfo.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c 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/usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o cd 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src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o 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/usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Date.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g 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-I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o cd 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75%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /build/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-popgen-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c 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CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-popgen.so.8.0.0 libbpp-popgen.so.8 libbpp-popgen.so make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [ 98%] Built target bpp-popgen-shared [100%] Linking CXX static library libbpp-popgen.a cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-popgen-static.dir/cmake_clean_target.cmake cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-popgen.a CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o /usr/bin/ranlib libbpp-popgen.a make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [100%] Built target bpp-popgen-static make[2]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/libbpp-popgen-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/libbpp-popgen-2.4.1 -B/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-popgen-2.4.1 /build/libbpp-popgen-2.4.1/src /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' cd /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-popgen-2.4.1 /build/libbpp-popgen-2.4.1/src /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/bpp-popgen-shared.dir/build'. make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/bpp-popgen-static.dir/build'. make[3]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [ 50%] Built target bpp-popgen-static [100%] Built target bpp-popgen-shared make[2]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config.cmake -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config-version.cmake -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets.cmake -- Installing: /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets-none.cmake make[1]: Leaving directory '/build/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/libbpp-popgen-2.4.1' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu mv /build/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-popgen-dev PKGSHL=libbpp-popgen8 install -d -m 755 debian/libbpp-popgen-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/libbpp-popgen-2.4.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/libbpp-popgen-2.4.1' echo "Architecture amd64 is the only one where a symbols file is provided" Architecture amd64 is the only one where a symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libbpp-popgen8/DEBIAN/symbols doesn't match completely debian/libbpp-popgen8.symbols --- debian/libbpp-popgen8.symbols (libbpp-popgen8_2.4.1-1_amd64) +++ dpkg-gensymbolsYixsX8 2022-03-14 18:55:22.425629010 -1200 @@ -756,6 +756,7 @@ _ZNK3bpp19VectorSiteContainer7valueAtEmm@Base 2.4.1 _ZNK3bpp19VectorSiteContainerclERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm@Base 2.4.1 _ZNK3bpp19VectorSiteContainerclEmm@Base 2.4.1 + _ZNK3bpp20AbstractCoreSequence7getNameB5cxx11Ev@Base 2.4.1-1 _ZNK3bpp20AbstractOutputStream12getPrecisionEv@Base 2.4.1 _ZNK3bpp20AbstractOutputStream27isScientificNotationEnabledEv@Base 2.4.1 _ZNK3bpp20MapSequenceContainer20getNumberOfSequencesEv@Base 2.4.1 @@ -903,6 +904,8 @@ _ZNK3bpp9RowMatrixIdEclEmm@Base 2.4.1 _ZNKSt5ctypeIcE8do_widenEc@Base 2.4.1 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp23VectorSequenceContainerEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.1 + _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1-1 + _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1-1 _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 2.4.1 _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdSt4lessIS5_ESaISt4pairIKS5_dEEEixEOS5_@Base 2.4.1 _ZNSt3mapIidSt4lessIiESaISt4pairIKidEEEixEOi@Base 2.4.1 @@ -915,6 +918,7 @@ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_@Base 2.4.1-1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base 2.4.1 @@ -983,6 +987,7 @@ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 2.4.1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.4.1 _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSA_PSt13_Rb_tree_nodeIS2_E@Base 2.4.1 + _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.4.1-1 _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.4.1 _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.4.1 _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.1 @@ -1341,6 +1346,7 @@ _ZTv0_n48_NK3bpp15DarwinVarSingle20getFormatDescriptionB5cxx11Ev@Base 2.4.1 _ZTv0_n48_NK3bpp16AbstractCoreSite11getPositionEv@Base 2.4.1 _ZTv0_n48_NK3bpp19GeneMapperCsvExport20getFormatDescriptionB5cxx11Ev@Base 2.4.1 + _ZTv0_n48_NK3bpp20AbstractCoreSequence7getNameB5cxx11Ev@Base 2.4.1-1 _ZTv0_n48_NK3bpp25AbstractSequenceContainer11getAlphabetEv@Base 2.4.1 _ZTv0_n48_NK3bpp4Site11getPositionEv@Base 2.4.1 _ZTv0_n48_NK3bpp7Genepop20getFormatDescriptionB5cxx11Ev@Base 2.4.1 echo "dh_makeshlibs for architecture amd64 including symbols done" dh_makeshlibs for architecture amd64 including symbols done make[1]: Leaving directory '/build/libbpp-popgen-2.4.1' dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libbpp-popgen-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-popgen-dev' in '../libbpp-popgen-dev_2.4.1-1_amd64.deb'. dpkg-deb: building package 'libbpp-popgen8-dbgsym' in '../libbpp-popgen8-dbgsym_2.4.1-1_amd64.deb'. dpkg-deb: building package 'libbpp-popgen8' in '../libbpp-popgen8_2.4.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbpp-popgen_2.4.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/60670 and its subdirectories I: Current time: Mon Mar 14 18:55:28 -12 2022 I: pbuilder-time-stamp: 1647327328