I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 16 09:12:13 -12 2021 I: pbuilder-time-stamp: 1629148333 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libvcflib_1.0.0~rc2+dfsg-2.dsc] I: copying [./libvcflib_1.0.0~rc2+dfsg.orig.tar.xz] I: copying [./libvcflib_1.0.0~rc2+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Sep 14 00:04:52 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libvcflib_1.0.0~rc2+dfsg-2.dsc dpkg-source: info: extracting libvcflib in libvcflib-1.0.0~rc2+dfsg dpkg-source: info: unpacking libvcflib_1.0.0~rc2+dfsg.orig.tar.xz dpkg-source: info: unpacking libvcflib_1.0.0~rc2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_tabixpp.patch dpkg-source: info: applying use_debian_packaged_smithwaterman.patch dpkg-source: info: applying multichoose.h.patch dpkg-source: info: applying filevercmp.h.patch dpkg-source: info: applying use_debian_packaged_fastahack.patch dpkg-source: info: applying intervaltree.patch dpkg-source: info: applying shared_lib.patch dpkg-source: info: applying keep_R_files.patch dpkg-source: info: applying use_debian_packaged_libssw.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying fix_ssw_cpp_header_name.patch dpkg-source: info: applying fix_installation.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/876/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='612615bd43ba48fa87b581a39c41dff1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='876' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.HCBy7URigg/pbuilderrc_Tkho --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.HCBy7URigg/b1 --logfile b1/build.log libvcflib_1.0.0~rc2+dfsg-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 6 20:25 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/876/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-exec, python-markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libipc-run3-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on python-markdown; however: Package python-markdown is not installed. pbuilder-satisfydepends-dummy depends on libtabixpp-dev; however: Package libtabixpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on libsmithwaterman-dev (>= 0.0+20160702-2); however: Package libsmithwaterman-dev is not installed. pbuilder-satisfydepends-dummy depends on libssw-dev; however: Package libssw-dev is not installed. pbuilder-satisfydepends-dummy depends on libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~); however: Package libfastahack-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libipc-run3-perl; however: Package libipc-run3-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libbz2-dev{a} libcroco3{a} libcurl3-gnutls{a} libdeflate0{a} libdisorder-dev{a} libdisorder0{a} libelf1{a} libexpat1{a} libfastahack-dev{a} libfastahack0{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhts-dev{a} libhts2{a} libicu63{a} libipc-run3-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsmithwaterman-dev{a} libsmithwaterman0{a} libssh2-1{a} libssl1.1{a} libssw-dev{a} libssw0{a} libtabixpp-dev{a} libtabixpp0{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} pkg-config{a} po-debconf{a} python{a} python-markdown{a} python-minimal{a} python-pkg-resources{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python-pygments python-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7 MB of archives. After unpacking 106 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 dh-exec amd64 0.23.1 [26.3 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-1 [4264 B] Get: 67 http://deb.debian.org/debian buster/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-1 [4212 B] Get: 68 http://deb.debian.org/debian buster/main amd64 libfastahack0 amd64 0.0+git20160702.bbc645f+dfsg-6 [24.3 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libfastahack-dev amd64 0.0+git20160702.bbc645f+dfsg-6 [24.3 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-11 [305 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 liblzma-dev amd64 5.2.4-1 [210 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libhts-dev amd64 1.9-11 [4347 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libipc-run3-perl all 0.048-1 [37.8 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-7 [36.0 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libsmithwaterman-dev amd64 0.0+git20160702.2610e25-7 [38.9 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libssw0 amd64 1.1-2 [16.5 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libssw-dev amd64 1.1-2 [19.3 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libtabixpp0 amd64 1.0.0-4 [7828 B] Get: 80 http://deb.debian.org/debian buster/main amd64 libtabixpp-dev amd64 1.0.0-4 [7160 B] Get: 81 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 python-markdown all 3.0.1-3 [60.6 kB] Fetched 32.7 MB in 1s (54.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. 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Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Setting up libsmithwaterman0 (0.0+git20160702.2610e25-7) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libdeflate0:amd64 (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libfastahack0 (0.0+git20160702.bbc645f+dfsg-6) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libfastahack-dev (0.0+git20160702.bbc645f+dfsg-6) ... Setting up autotools-dev (20180224.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... 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Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libsmithwaterman-dev (0.0+git20160702.2610e25-7) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up libhts2:amd64 (1.9-11) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libhts-dev:amd64 (1.9-11) ... Setting up python-markdown (3.0.1-3) ... Setting up libtabixpp0:amd64 (1.0.0-4) ... Setting up libtabixpp-dev:amd64 (1.0.0-4) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-exec (0.23.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libvcflib-1.0.0~rc2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libvcflib dpkg-buildpackage: info: source version 1.0.0~rc2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean make -j15 clean make[1]: Entering directory '/build/libvcflib-1.0.0~rc2+dfsg' make[1]: git: Command not found rm -f binaries/vcfecho binaries/vcfnormalizesvs binaries/dumpContigsFromHeader binaries/bFst binaries/pVst binaries/hapLrt binaries/popStats binaries/wcFst binaries/iHS binaries/segmentFst binaries/segmentIhs binaries/genotypeSummary binaries/sequenceDiversity binaries/pFst binaries/smoother binaries/vcfld binaries/plotHaps binaries/abba-baba binaries/permuteGPAT++ binaries/permuteSmooth binaries/normalize-iHS binaries/meltEHH binaries/vcfaltcount binaries/vcfhetcount binaries/vcfhethomratio binaries/vcffilter binaries/vcf2tsv binaries/vcfgenotypes binaries/vcfannotategenotypes binaries/vcfcommonsamples binaries/vcfremovesamples binaries/vcfkeepsamples binaries/vcfsamplenames binaries/vcfgenotypecompare binaries/vcffixup binaries/vcfclassify binaries/vcfsamplediff binaries/vcfremoveaberrantgenotypes binaries/vcfrandom binaries/vcfparsealts binaries/vcfstats binaries/vcfflatten binaries/vcfprimers binaries/vcfnumalt binaries/vcfcleancomplex binaries/vcfintersect binaries/vcfannotate binaries/vcfallelicprimitives binaries/vcfoverlay binaries/vcfaddinfo binaries/vcfkeepinfo binaries/vcfkeepgeno binaries/vcfafpath binaries/vcfcountalleles binaries/vcflength binaries/vcfdistance binaries/vcfrandomsample binaries/vcfentropy binaries/vcfglxgt binaries/vcfroc binaries/vcfcheck binaries/vcfstreamsort binaries/vcfuniq binaries/vcfuniqalleles binaries/vcfremap binaries/vcf2fasta binaries/vcfsitesummarize binaries/vcfbreakmulti binaries/vcfcreatemulti binaries/vcfevenregions binaries/vcfcat binaries/vcfgenosummarize binaries/vcfgenosamplenames binaries/vcfgeno2haplo binaries/vcfleftalign binaries/vcfcombine binaries/vcfgeno2alleles binaries/vcfindex binaries/vcf2dag binaries/vcfsample2info binaries/vcfqual2info binaries/vcfinfo2qual binaries/vcfglbound binaries/vcfunphase binaries/vcfnull2ref binaries/vcfinfosummarize src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o rm -f ssw_cpp.o ssw.o rm -f libvcflib.so rm -rf binaries rm -rf lib rm -rf include rm -rf obj # cd tabixpp && make clean # cd smithwaterman && make clean # cd fastahack && make clean make[1]: Leaving directory '/build/libvcflib-1.0.0~rc2+dfsg' debian/rules override_dh_clean make[1]: Entering directory '/build/libvcflib-1.0.0~rc2+dfsg' dh_clean find . -name "*.o" -delete make[1]: Leaving directory '/build/libvcflib-1.0.0~rc2+dfsg' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/libvcflib-1.0.0~rc2+dfsg' dh_auto_build make -j15 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/libvcflib-1.0.0~rc2+dfsg' make[2]: git: Command not found if [ ! -d binaries ]; then mkdir -p binaries; fi if [ ! -d lib ]; then mkdir -p lib; fi if [ ! -d include ]; then mkdir -p include; fi if [ ! -d obj ]; then mkdir -p obj; fi echo "Source does not contain dir multichoose" #mkdir -p filevercmp echo "Source does not contain dir intervaltree" Source does not contain dir multichoose Source does not contain dir intervaltree # cd multichoose && make && cp *.h* /build/libvcflib-1.0.0~rc2+dfsg/include/ #cp /usr/share/gnulib/lib/filevercmp.* filevercmp # cd intervaltree && make && cp *.h* /build/libvcflib-1.0.0~rc2+dfsg/include/ #echo 'Proper use of filevercmp would be: `gnulib-tool --import filevercmp` - but it needs ./configure.ac' mkdir -p /build/libvcflib-1.0.0~rc2+dfsg/include/ && cp -a debian/include/* /build/libvcflib-1.0.0~rc2+dfsg/include/ #We here go with quilt patches from upstream files cd filevercmp && g++ -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -fPIC -c filevercmp.c ln -sf ../filevercmp/filevercmp.h /build/libvcflib-1.0.0~rc2+dfsg/include/filevercmp.h g++ -c -g -O2 -ffile-prefix-map=/build/libvcflib-1.0.0~rc2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/Variant.o src/Variant.cpp `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /build/libvcflib-1.0.0~rc2+dfsg/include/ g++ -c -g -O2 -ffile-prefix-map=/build/libvcflib-1.0.0~rc2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/rnglib.o src/rnglib.cpp `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /build/libvcflib-1.0.0~rc2+dfsg/include/ g++ -c -g -O2 -ffile-prefix-map=/build/libvcflib-1.0.0~rc2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/var.o src/var.cpp `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /build/libvcflib-1.0.0~rc2+dfsg/include/ g++ -c -g -O2 -ffile-prefix-map=/build/libvcflib-1.0.0~rc2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/pdflib.o src/pdflib.cpp `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /build/libvcflib-1.0.0~rc2+dfsg/include/ g++ -c -g -O2 -ffile-prefix-map=/build/libvcflib-1.0.0~rc2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/cdflib.o src/cdflib.cpp `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /build/libvcflib-1.0.0~rc2+dfsg/include/ g++ -c -g -O2 -ffile-prefix-map=/build/libvcflib-1.0.0~rc2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/split.o src/split.cpp `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /build/libvcflib-1.0.0~rc2+dfsg/include/ src/Variant.cpp: In member function 'std::pair vcflib::Variant::convert_to_breakends(FastaReference&)': src/Variant.cpp:174:1: warning: control reaches end of non-void function [-Wreturn-type] }; ^ src/Variant.cpp: In member function 'bool vcflib::Variant::getInfoValueBool(std::__cxx11::string&, int)': src/Variant.cpp:502:5: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/Variant.cpp: In member function 'bool vcflib::Variant::getSampleValueBool(std::__cxx11::string&, std::__cxx11::string&, int)': src/Variant.cpp:627:5: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/Variant.cpp: In member function 'std::__cxx11::string vcflib::Variant::getSampleValueString(std::__cxx11::string&, std::__cxx11::string&, int)': src/Variant.cpp:661:5: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/Variant.cpp: In member function 'double vcflib::Variant::getSampleValueFloat(std::__cxx11::string&, std::__cxx11::string&, int)': src/Variant.cpp:699:5: warning: control reaches end of non-void function [-Wreturn-type] } ^ # ar rs libvcflib.a src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o filevercmp/filevercmp.o gcc -shared -Wl,-soname -Wl,libvcflib.so.1 -o libvcflib.so.1 src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o filevercmp/filevercmp.o ln -s libvcflib.so.1 libvcflib.so cp -a libvcflib.so* lib g++ src/vcfecho.cpp -o binaries/vcfecho `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfnormalizesvs.cpp -o binaries/vcfnormalizesvs `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/dumpContigsFromHeader.cpp -o binaries/dumpContigsFromHeader `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/bFst.cpp -o binaries/bFst `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/pVst.cpp -o binaries/pVst `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/hapLrt.cpp -o binaries/hapLrt `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/popStats.cpp -o binaries/popStats `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/wcFst.cpp -o binaries/wcFst `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/iHS.cpp -o binaries/iHS `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/segmentFst.cpp -o binaries/segmentFst `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/segmentIhs.cpp -o binaries/segmentIhs `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/genotypeSummary.cpp -o binaries/genotypeSummary `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/sequenceDiversity.cpp -o binaries/sequenceDiversity `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/pFst.cpp -o binaries/pFst `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/smoother.cpp -o binaries/smoother `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfld.cpp -o binaries/vcfld `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/plotHaps.cpp -o binaries/plotHaps `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/abba-baba.cpp -o binaries/abba-baba `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/permuteGPAT++.cpp -o binaries/permuteGPAT++ `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/permuteSmooth.cpp -o binaries/permuteSmooth `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/normalize-iHS.cpp -o binaries/normalize-iHS `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" src/abba-baba.cpp: In function 'int sample_het(int&)': src/abba-baba.cpp:74:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ g++ src/meltEHH.cpp -o binaries/meltEHH `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfaltcount.cpp -o binaries/vcfaltcount `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfhetcount.cpp -o binaries/vcfhetcount `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfhethomratio.cpp -o binaries/vcfhethomratio `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcffilter.cpp -o binaries/vcffilter `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcf2tsv.cpp -o binaries/vcf2tsv `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfgenotypes.cpp -o binaries/vcfgenotypes `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfannotategenotypes.cpp -o binaries/vcfannotategenotypes `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfcommonsamples.cpp -o binaries/vcfcommonsamples `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfremovesamples.cpp -o binaries/vcfremovesamples `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfkeepsamples.cpp -o binaries/vcfkeepsamples `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfsamplenames.cpp -o binaries/vcfsamplenames `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfgenotypecompare.cpp -o binaries/vcfgenotypecompare `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcffixup.cpp -o binaries/vcffixup `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfclassify.cpp -o binaries/vcfclassify `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfsamplediff.cpp -o binaries/vcfsamplediff `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfremoveaberrantgenotypes.cpp -o binaries/vcfremoveaberrantgenotypes `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfrandom.cpp -o binaries/vcfrandom `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfparsealts.cpp -o binaries/vcfparsealts `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfstats.cpp -o binaries/vcfstats `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfflatten.cpp -o binaries/vcfflatten `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfprimers.cpp -o binaries/vcfprimers `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfnumalt.cpp -o binaries/vcfnumalt `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfcleancomplex.cpp -o binaries/vcfcleancomplex `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfintersect.cpp -o binaries/vcfintersect `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfannotate.cpp -o binaries/vcfannotate `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfallelicprimitives.cpp -o binaries/vcfallelicprimitives `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfoverlay.cpp -o binaries/vcfoverlay `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfaddinfo.cpp -o binaries/vcfaddinfo `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfkeepinfo.cpp -o binaries/vcfkeepinfo `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfkeepgeno.cpp -o binaries/vcfkeepgeno `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfafpath.cpp -o binaries/vcfafpath `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfcountalleles.cpp -o binaries/vcfcountalleles `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcflength.cpp -o binaries/vcflength `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfdistance.cpp -o binaries/vcfdistance `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfrandomsample.cpp -o binaries/vcfrandomsample `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfentropy.cpp -o binaries/vcfentropy `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfglxgt.cpp -o binaries/vcfglxgt `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfroc.cpp -o binaries/vcfroc `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfcheck.cpp -o binaries/vcfcheck `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfstreamsort.cpp -o binaries/vcfstreamsort `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfuniq.cpp -o binaries/vcfuniq `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfuniqalleles.cpp -o binaries/vcfuniqalleles `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfremap.cpp -o binaries/vcfremap `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcf2fasta.cpp -o binaries/vcf2fasta `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfsitesummarize.cpp -o binaries/vcfsitesummarize `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfbreakmulti.cpp -o binaries/vcfbreakmulti `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfcreatemulti.cpp -o binaries/vcfcreatemulti `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfevenregions.cpp -o binaries/vcfevenregions `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfcat.cpp -o binaries/vcfcat `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfgenosummarize.cpp -o binaries/vcfgenosummarize `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfgenosamplenames.cpp -o binaries/vcfgenosamplenames `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfgeno2haplo.cpp -o binaries/vcfgeno2haplo `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfleftalign.cpp -o binaries/vcfleftalign `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfcombine.cpp -o binaries/vcfcombine `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfgeno2alleles.cpp -o binaries/vcfgeno2alleles `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfindex.cpp -o binaries/vcfindex `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcf2dag.cpp -o binaries/vcf2dag `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfsample2info.cpp -o binaries/vcfsample2info `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfqual2info.cpp -o binaries/vcfqual2info `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfinfo2qual.cpp -o binaries/vcfinfo2qual `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfglbound.cpp -o binaries/vcfglbound `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfunphase.cpp -o binaries/vcfunphase `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfnull2ref.cpp -o binaries/vcfnull2ref `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" g++ src/vcfinfosummarize.cpp -o binaries/vcfinfosummarize `pkg-config --cflags libsmithwaterman` `pkg-config --cflags libfastahack` -Iinclude -Llib -lvcflib -lhts -lpthread -lz -lm -llzma -lbz2 -ltabixpp `pkg-config --libs libsmithwaterman` `pkg-config --libs libfastahack` -ldisorder -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"\" cp scripts/* binaries make[2]: Leaving directory '/build/libvcflib-1.0.0~rc2+dfsg' markdown_py -f README.html README.md make[1]: Leaving directory '/build/libvcflib-1.0.0~rc2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libvcflib-1.0.0~rc2+dfsg' export LD_LIBRARY_PATH=/build/libvcflib-1.0.0~rc2+dfsg/lib/:D_LIBRARY_PATH dh_auto_test make[1]: Leaving directory '/build/libvcflib-1.0.0~rc2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/libvcflib-1.0.0~rc2+dfsg' dh_install find debian -name filevercmp.h -delete cp -a filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/ mkdir -p debian/libvcflib-dev/usr/include/intervaltree mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree mv debian/libvcflib-tools/usr/lib/vcflib/binaries debian/libvcflib-tools/usr/lib/vcflib/bin # install pkg-config file mkdir -p /build/libvcflib-1.0.0~rc2+dfsg/debian/libvcflib-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv libvcflib.pc /build/libvcflib-1.0.0~rc2+dfsg/debian/libvcflib-dev/usr/lib/x86_64-linux-gnu/pkgconfig rm -rf debian/*/usr/lib/vcflib/bin/*.R for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libvcflib-dev/usr/lib/x86_64-linux-gnu/libvcflib.so: No such file or directory make[1]: Leaving directory '/build/libvcflib-1.0.0~rc2+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/libvcflib-1.0.0~rc2+dfsg' dh_fixperms chmod -x debian/*/usr/lib/R/site-library/*/*.R make[1]: Leaving directory '/build/libvcflib-1.0.0~rc2+dfsg' dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: symbol _ZTVSt15basic_streambufIcSt11char_traitsIcEE used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNSt7__cxx1118basic_stringstreamIcSt11char_traitsIcESaIcEEC1ESt13_Ios_Openmode used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN19CSmithWatermanGotoh23EnableEntropyGapPenaltyEf used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE14_M_replace_auxEmmmc used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZStlsISt11char_traitsIcEERSt13basic_ostreamIcT_ES5_PKc used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZSt29_Rb_tree_insert_and_rebalancebPSt18_Rb_tree_node_baseS0_RS_ used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTVNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEEE used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE10_M_replaceEmmPKcm used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNSt7__cxx1118basic_stringstreamIcSt11char_traitsIcESaIcEED1Ev used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZSt25__throw_bad_function_callv used by debian/libvcflib1/usr/lib/x86_64-linux-gnu/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: 92 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth debian/libvcflib-tools/usr/lib/vcflib/bin/iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample debian/libvcflib-tools/usr/lib/vcflib/bin/bFst debian/libvcflib-tools/usr/lib/vcflib/bin/pVst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti debian/libvcflib-tools/usr/lib/vcflib/bin/popStats debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers debian/libvcflib-tools/usr/lib/vcflib/bin/pFst debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/smoother debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth debian/libvcflib-tools/usr/lib/vcflib/bin/iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample debian/libvcflib-tools/usr/lib/vcflib/bin/bFst debian/libvcflib-tools/usr/lib/vcflib/bin/pVst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti debian/libvcflib-tools/usr/lib/vcflib/bin/popStats debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers debian/libvcflib-tools/usr/lib/vcflib/bin/pFst debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/smoother debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader were not linked against libbz2.so.1.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth debian/libvcflib-tools/usr/lib/vcflib/bin/iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample debian/libvcflib-tools/usr/lib/vcflib/bin/bFst debian/libvcflib-tools/usr/lib/vcflib/bin/pVst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti debian/libvcflib-tools/usr/lib/vcflib/bin/popStats debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers debian/libvcflib-tools/usr/lib/vcflib/bin/pFst debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/smoother debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth debian/libvcflib-tools/usr/lib/vcflib/bin/iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample debian/libvcflib-tools/usr/lib/vcflib/bin/bFst debian/libvcflib-tools/usr/lib/vcflib/bin/pVst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti debian/libvcflib-tools/usr/lib/vcflib/bin/popStats debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers debian/libvcflib-tools/usr/lib/vcflib/bin/pFst debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/smoother debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader were not linked against liblzma.so.5 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth debian/libvcflib-tools/usr/lib/vcflib/bin/iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample debian/libvcflib-tools/usr/lib/vcflib/bin/bFst debian/libvcflib-tools/usr/lib/vcflib/bin/pVst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti debian/libvcflib-tools/usr/lib/vcflib/bin/popStats debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers debian/libvcflib-tools/usr/lib/vcflib/bin/pFst debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/smoother debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader were not linked against libhts.so.2 (they use none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libvcflib-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libvcflib1' in '../libvcflib1_1.0.0~rc2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libvcflib1-dbgsym' in '../libvcflib1-dbgsym_1.0.0~rc2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libvcflib-tools-dbgsym' in '../libvcflib-tools-dbgsym_1.0.0~rc2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.0~rc2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.0~rc2+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libvcflib_1.0.0~rc2+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/876 and its subdirectories I: Current time: Mon Aug 16 09:14:42 -12 2021 I: pbuilder-time-stamp: 1629148482