I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 12 22:48:53 +14 2021 I: pbuilder-time-stamp: 1634028533 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pbcommand_1.1.1-1.dsc] I: copying [./python-pbcommand_1.1.1.orig.tar.gz] I: copying [./python-pbcommand_1.1.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Nov 1 08:17:57 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pbcommand_1.1.1-1.dsc dpkg-source: info: extracting python-pbcommand in python-pbcommand-1.1.1 dpkg-source: info: unpacking python-pbcommand_1.1.1.orig.tar.gz dpkg-source: info: unpacking python-pbcommand_1.1.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3974162/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3974162/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3974162/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=e6701c70395d4017954ecbb344b23be3 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3974162 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.XLbuBZMoNE/pbuilderrc_feqw --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.XLbuBZMoNE/b2 --logfile b2/build.log python-pbcommand_1.1.1-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Oct 12 22:48 sh -> bash lrwxrwxrwx 1 root root 4 Oct 7 22:25 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/3974162/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, python-all, python-setuptools, python-xmlbuilder, python-jsonschema, python-avro, python-numpy, python-requests, python-iso8601, python-nose, python-pbcore dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all; however: Package python-all is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python-xmlbuilder; however: Package python-xmlbuilder is not installed. pbuilder-satisfydepends-dummy depends on python-jsonschema; however: Package python-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python-avro; however: Package python-avro is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-requests; however: Package python-requests is not installed. pbuilder-satisfydepends-dummy depends on python-iso8601; however: Package python-iso8601 is not installed. pbuilder-satisfydepends-dummy depends on python-nose; however: Package python-nose is not installed. pbuilder-satisfydepends-dummy depends on python-pbcore; however: Package python-pbcore is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhts2{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python{a} python-all{a} python-avro{a} python-certifi{a} python-chardet{a} python-funcsigs{a} python-functools32{a} python-idna{a} python-iso8601{a} python-jsonschema{a} python-minimal{a} python-mock{a} python-nose{a} python-numpy{a} python-pbcore{a} python-pbr{a} python-pkg-resources{a} python-pysam{a} python-requests{a} python-setuptools{a} python-six{a} python-urllib3{a} python-xmlbuilder{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python-cryptography python-h5py python-ipaddress python-openssl shared-mime-info wget xdg-user-dirs 0 packages upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 50.3 MB of archives. After unpacking 174 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 python-xmlbuilder all 1.0-1 [5884 B] Get: 23 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 python-all amd64 2.7.16-1 [1044 B] Get: 83 http://deb.debian.org/debian buster/main amd64 python-avro all 1.8.2+dfsg-2 [59.4 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 python-certifi all 2018.8.24-1 [140 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 python-chardet all 3.0.4-3 [80.6 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 python-funcsigs all 1.0.2-4 [13.7 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 python-functools32 all 3.2.3.2-3 [11.0 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 python-idna all 2.6-1 [34.1 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 python-iso8601 all 0.1.11-1 [12.7 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 python-setuptools all 40.8.0-1 [382 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 python-six all 1.12.0-1 [15.7 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 python-pbr all 4.2.0-5 [56.5 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 python-mock all 2.0.0-4 [60.2 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 python-jsonschema all 2.6.0-4 [33.7 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 python-nose all 1.3.7-4 [132 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 python-pysam amd64 0.15.2+ds-2 [1629 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 python-pbcore all 1.6.5+dfsg-1 [9100 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 python-urllib3 all 1.24.1-1 [97.0 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 python-requests all 2.21.0-1 [67.1 kB] Fetched 50.3 MB in 1s (59.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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No schema files found: doing nothing. Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libdeflate0:amd64 (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up openssl (1.1.1d-0+deb10u7) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up python-xmlbuilder (1.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python-iso8601 (0.1.11-1) ... Setting up python-all (2.7.16-1) ... Setting up python-certifi (2018.8.24-1) ... Setting up python-six (1.12.0-1) ... Setting up python-idna (2.6-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-avro (1.8.2+dfsg-2) ... Setting up python-funcsigs (1.0.2-4) ... Setting up python-functools32 (3.2.3.2-3) ... Setting up python-chardet (3.0.4-3) ... Setting up python-pbr (4.2.0-5) ... update-alternatives: using /usr/bin/python2-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up python-urllib3 (1.24.1-1) ... Setting up python-pysam (0.15.2+ds-2) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-nose (1.3.7-4) ... Setting up python-mock (2.0.0-4) ... Setting up python-requests (2.21.0-1) ... Setting up python-pbcore (1.6.5+dfsg-1) ... Setting up python-jsonschema (2.6.0-4) ... update-alternatives: using /usr/bin/python2-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package hostname: Name or service not known I: Running cd /build/python-pbcommand-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pbcommand_1.1.1-1_source.changes dpkg-buildpackage: info: source package python-pbcommand dpkg-buildpackage: info: source version 1.1.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean LC_ALL=C.UTF-8 dh clean --with python2 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build LC_ALL=C.UTF-8 dh build --with python2 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_validators.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_testkit.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_schema_validation.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_resolver.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_tool_contract_v1.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_tool_contract.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_report.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_conditions.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_common.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_parsers.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_table.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_plotgroup.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_plot.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_column.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_attribute.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_common_pacbio_options.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_common.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_load_resolved_tool_contract.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_engine_runner.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_e2e_example_apps.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_common_cmdline_core.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/base_utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/validators.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/resolver.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/interactive_resolver.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/common_options.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/nunit.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/core.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/base_utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/models.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/cli.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/_service_access_layer.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/tool_contract_io.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/report.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/conditions.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/common.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/tool_contract.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/report.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/parser.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/conditions.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/common.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine copying pbcommand/engine/runner.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine copying pbcommand/engine/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli copying pbcommand/cli/utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli copying pbcommand/cli/quick.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli copying pbcommand/cli/core.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli copying pbcommand/cli/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/template_subparser_simple.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/template_simple.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_txt_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_simple_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_scatter_fasta_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_quick_hello_world.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_mixed_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_gather_fasta_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/schemas/tool_contract.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/resolved_tool_contract.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/report_spec.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_template_view_rules.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_presets_simple.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_presets.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pbreport.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/datastore_view_rules.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/datastore.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pbcommand-1.1.1' PYTHONPATH=/build/python-pbcommand-1.1.1 \ nosetests -s --verbose --logging-config log_nose.cfg --where=tests test_01 (tests.test_common_cmdline_core.SimpleTest) ... [INFO] 2021-10-12 08:49:53,045Z [tests.test_common_cmdline_core _pacbio_main_runner 130] Using pbcommand v1.1.1 [INFO] 2021-10-12 08:49:53,045Z [tests.test_common_cmdline_core _pacbio_main_runner 131] completed setting up logger with [INFO] 2021-10-12 08:49:53,045Z [tests.test_common_cmdline_core _pacbio_main_runner 132] log opts {'file_name': None, 'level': 10} [INFO] 2021-10-12 08:49:53,045Z [tests.test_common_cmdline_core args_runner 14] Running args: (Namespace(debug=True, example_file='/path/to/my_fake_file.txt'),) [INFO] 2021-10-12 08:49:53,045Z [tests.test_common_cmdline_core _pacbio_main_runner 155] exiting with return code 0 in 0.00 sec. ok test_run_e2e (tests.test_e2e_example_apps.PbTestApp) ... ok test_run_e2e (tests.test_e2e_example_apps.TestBadChoiceValue) ... [DEBUG] 2021-10-12 08:49:53,050Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_mixed_app --emit-tool-contract [DEBUG] 2021-10-12 08:49:53,050Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2021-10-12 08:49:53,050Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpTxGhVM-rtc-test [DEBUG] 2021-10-12 08:49:53,279Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpTxGhVM-rtc-test/tmpdI6VIx-TestBadChoiceValue-tool_contract.json [INFO] 2021-10-12 08:49:53,281Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC ok test_run_e2e (tests.test_e2e_example_apps.TestOptionTypes) ... [DEBUG] 2021-10-12 08:49:53,282Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_mixed_app --emit-tool-contract [DEBUG] 2021-10-12 08:49:53,282Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2021-10-12 08:49:53,282Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpsQJZZa-rtc-test [DEBUG] 2021-10-12 08:49:53,533Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpsQJZZa-rtc-test/tmpGSfuJi-TestOptionTypes-tool_contract.json [INFO] 2021-10-12 08:49:53,535Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2021-10-12 08:49:53,536Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpsQJZZa-rtc-test/tmpVWblkxresolved_tool_contract.json [INFO] 2021-10-12 08:49:53,536Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_mixed_app --resolved-tool-contract /tmp/tmpsQJZZa-rtc-test/tmpVWblkxresolved_tool_contract.json' [INFO] 2021-10-12 08:49:53,755Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_mixed_app --emit-tool-contract [DEBUG] 2021-10-12 08:49:53,755Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2021-10-12 08:49:53,755Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_mixed_app [DEBUG] 2021-10-12 08:49:53,756Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpsQJZZa-rtc-test/example.report.json'] ok test_run_e2e (tests.test_e2e_example_apps.TestQuickCustomTxtCustomOuts) ... [DEBUG] 2021-10-12 08:49:53,758Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_custom_outs [DEBUG] 2021-10-12 08:49:53,758Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2021-10-12 08:49:53,758Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpYcMNeZ-rtc-test [DEBUG] 2021-10-12 08:49:53,964Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpYcMNeZ-rtc-test/tmpA68Ty6-TestQuickCustomTxtCustomOuts-tool_contract.json [INFO] 2021-10-12 08:49:53,965Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2021-10-12 08:49:53,966Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpYcMNeZ-rtc-test/tmp5KO88Bresolved_tool_contract.json [INFO] 2021-10-12 08:49:53,966Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc /tmp/tmpYcMNeZ-rtc-test/tmp5KO88Bresolved_tool_contract.json' [INFO] 2021-10-12 08:49:54,189Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_custom_outs [DEBUG] 2021-10-12 08:49:54,189Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2021-10-12 08:49:54,189Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_txt_custom_outs [DEBUG] 2021-10-12 08:49:54,189Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpYcMNeZ-rtc-test/PacBio.FileTypes.txt_file_0.txt', '/tmp/tmpYcMNeZ-rtc-test/PacBio.FileTypes.txt_file_1.txt'] ok test_run_e2e (tests.test_e2e_example_apps.TestQuickDevHelloWorld) ... [DEBUG] 2021-10-12 08:49:54,191Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_qhello_world [DEBUG] 2021-10-12 08:49:54,191Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2021-10-12 08:49:54,191Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpVQpFKJ-rtc-test [DEBUG] 2021-10-12 08:49:54,440Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpVQpFKJ-rtc-test/tmp8x8Icx-TestQuickDevHelloWorld-tool_contract.json [INFO] 2021-10-12 08:49:54,441Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2021-10-12 08:49:54,442Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpVQpFKJ-rtc-test/tmpJjT0Fhresolved_tool_contract.json [INFO] 2021-10-12 08:49:54,442Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc /tmp/tmpVQpFKJ-rtc-test/tmpJjT0Fhresolved_tool_contract.json' [INFO] 2021-10-12 08:49:54,660Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_qhello_world [DEBUG] 2021-10-12 08:49:54,660Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2021-10-12 08:49:54,660Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_qhello_world [DEBUG] 2021-10-12 08:49:54,661Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpVQpFKJ-rtc-test/file.fasta'] ok test_run_e2e (tests.test_e2e_example_apps.TestQuickOptionTypes) ... [DEBUG] 2021-10-12 08:49:54,662Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_test_options [DEBUG] 2021-10-12 08:49:54,662Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2021-10-12 08:49:54,662Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpxYDeoT-rtc-test [DEBUG] 2021-10-12 08:49:54,886Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpxYDeoT-rtc-test/tmpcgjxq9-TestQuickOptionTypes-tool_contract.json [INFO] 2021-10-12 08:49:54,888Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2021-10-12 08:49:54,888Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpxYDeoT-rtc-test/tmpGQ8lohresolved_tool_contract.json [INFO] 2021-10-12 08:49:54,889Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc /tmp/tmpxYDeoT-rtc-test/tmpGQ8lohresolved_tool_contract.json' [INFO] 2021-10-12 08:49:55,119Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_test_options [DEBUG] 2021-10-12 08:49:55,119Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2021-10-12 08:49:55,120Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_test_options [DEBUG] 2021-10-12 08:49:55,120Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpxYDeoT-rtc-test/file.txt'] ok test_run_e2e (tests.test_e2e_example_apps.TestQuickTxt) ... [DEBUG] 2021-10-12 08:49:55,121Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_hello [DEBUG] 2021-10-12 08:49:55,121Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2021-10-12 08:49:55,121Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpESzldJ-rtc-test [DEBUG] 2021-10-12 08:49:55,328Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpESzldJ-rtc-test/tmpSXjeZc-TestQuickTxt-tool_contract.json [INFO] 2021-10-12 08:49:55,329Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2021-10-12 08:49:55,330Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpESzldJ-rtc-test/tmpTgEekcresolved_tool_contract.json [INFO] 2021-10-12 08:49:55,330Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc /tmp/tmpESzldJ-rtc-test/tmpTgEekcresolved_tool_contract.json' [INFO] 2021-10-12 08:49:55,531Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_hello [DEBUG] 2021-10-12 08:49:55,531Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2021-10-12 08:49:55,531Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_txt_hello [DEBUG] 2021-10-12 08:49:55,531Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpESzldJ-rtc-test/file.txt', '/tmp/tmpESzldJ-rtc-test/file-1.txt'] ok test_run_e2e (tests.test_e2e_example_apps.TestRunDevApp) ... [DEBUG] 2021-10-12 08:49:55,533Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_app --emit-tool-contract [DEBUG] 2021-10-12 08:49:55,533Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.fasta'] [DEBUG] 2021-10-12 08:49:55,533Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpPUNFpV-rtc-test [DEBUG] 2021-10-12 08:49:55,965Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpPUNFpV-rtc-test/tmpaC6iJl-TestRunDevApp-tool_contract.json [INFO] 2021-10-12 08:49:55,966Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2021-10-12 08:49:55,967Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpPUNFpV-rtc-test/tmpa5HCyRresolved_tool_contract.json [INFO] 2021-10-12 08:49:55,968Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_app --resolved-tool-contract /tmp/tmpPUNFpV-rtc-test/tmpa5HCyRresolved_tool_contract.json' [INFO] 2021-10-12 08:49:56,453Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_app --emit-tool-contract [DEBUG] 2021-10-12 08:49:56,454Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2021-10-12 08:49:56,454Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_app [DEBUG] 2021-10-12 08:49:56,454Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpPUNFpV-rtc-test/filter.fasta'] ok test_run_e2e (tests.test_e2e_example_apps.TestTxtDevApp) ... [DEBUG] 2021-10-12 08:49:56,455Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_txt_app --emit-tool-contract [DEBUG] 2021-10-12 08:49:56,455Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2021-10-12 08:49:56,456Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpKGQZ5o-rtc-test [DEBUG] 2021-10-12 08:49:56,682Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpKGQZ5o-rtc-test/tmpX45brE-TestTxtDevApp-tool_contract.json [INFO] 2021-10-12 08:49:56,683Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2021-10-12 08:49:56,685Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpKGQZ5o-rtc-test/tmpi5eY4oresolved_tool_contract.json [INFO] 2021-10-12 08:49:56,685Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_txt_app --resolved-tool-contract /tmp/tmpKGQZ5o-rtc-test/tmpi5eY4oresolved_tool_contract.json' [INFO] 2021-10-12 08:49:56,940Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_txt_app --emit-tool-contract [DEBUG] 2021-10-12 08:49:56,940Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2021-10-12 08:49:56,940Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_txt_app [DEBUG] 2021-10-12 08:49:56,940Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpKGQZ5o-rtc-test/output.txt'] ok test_simple_run_cmd (tests.test_engine_runner.RunnerSmokeTest) ... [DEBUG] 2021-10-12 08:49:56,953Z [pbcommand.engine.runner run_cmd 45] calling cmd 'cat /tmp/tmpFQQublsimple-cmd/tmpN1vP6t.txt > /tmp/tmpFQQublsimple-cmd/tmpEc4g5R*.txt' on i-capture-the-hostname [DEBUG] 2021-10-12 08:49:57,267Z [pbcommand.engine.runner run_cmd 76] returncode is 0 in 0.32 sec. ok test_01 (tests.test_load_resolved_tool_contract.TestLoadResolvedContract) ... [INFO] 2021-10-12 08:49:57,270Z [tests.test_load_resolved_tool_contract test_01 33] ok test_01 (tests.test_load_resolved_tool_contract.TestResolveContract) ... [INFO] 2021-10-12 08:49:57,271Z [tests.test_load_resolved_tool_contract test_01 50] [DEBUG] 2021-10-12 08:49:57,271Z [tests.test_load_resolved_tool_contract test_01 55] Resources [, , ] ok test_datastore_file (tests.test_models_common.TestDataStore) ... [INFO] 2021-10-12 08:49:57,273Z [tests.test_models_common test_datastore_file 33] DataStoreFile: ok test_datastore_paths (tests.test_models_common.TestDataStore) ... ok test_file_types (tests.test_models_common.TestLoadFileTypes) ... ok test_is_valid (tests.test_models_common.TestLoadFileTypes) ... ok test_bad_invalid_choice (tests.test_models_common_pacbio_options.TestPacBioBasicChoiceTest) ... ok test_sanity_choice_option (tests.test_models_common_pacbio_options.TestPacBioBasicChoiceTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioBasicChoiceTest) ... [DEBUG] 2021-10-12 08:49:57,276Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioBasicOptionTest) ... [DEBUG] 2021-10-12 08:49:57,277Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_value_float (tests.test_models_common_pacbio_options.TestPacBioBooleanOptionTest) ... ok test_bad_value_int (tests.test_models_common_pacbio_options.TestPacBioBooleanOptionTest) ... ok test_bad_value_string (tests.test_models_common_pacbio_options.TestPacBioBooleanOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioBooleanOptionTest) ... [DEBUG] 2021-10-12 08:49:57,278Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_invalid_choice (tests.test_models_common_pacbio_options.TestPacBioChoiceStringOptionTest) ... ok test_sanity_choice_option (tests.test_models_common_pacbio_options.TestPacBioChoiceStringOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioChoiceStringOptionTest) ... [DEBUG] 2021-10-12 08:49:57,279Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_choices (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... ok test_bad_invalid_choice (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... ok test_coerce_float_choices (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... ok test_sanity_choice_option (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... [DEBUG] 2021-10-12 08:49:57,281Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_value_boolean (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... ok test_bad_value_float_tuple (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... ok test_bad_value_string (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... ok test_coerced_value_int (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... [DEBUG] 2021-10-12 08:49:57,282Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_invalid_choice (tests.test_models_common_pacbio_options.TestPacBioIntChoiceOptionTest) ... ok test_sanity_choice_option (tests.test_models_common_pacbio_options.TestPacBioIntChoiceOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioIntChoiceOptionTest) ... [DEBUG] 2021-10-12 08:49:57,283Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_value_boolean (tests.test_models_common_pacbio_options.TestPacBioIntOptionTest) ... ok test_bad_value_float (tests.test_models_common_pacbio_options.TestPacBioIntOptionTest) ... ok test_bad_value_string (tests.test_models_common_pacbio_options.TestPacBioIntOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioIntOptionTest) ... [DEBUG] 2021-10-12 08:49:57,285Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok Test that unicode values are not Supported ... ok test_bad_value_float (tests.test_models_common_pacbio_options.TestPacBioStringOptionTest) ... ok test_bad_value_int (tests.test_models_common_pacbio_options.TestPacBioStringOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioStringOptionTest) ... [DEBUG] 2021-10-12 08:49:57,286Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_01 (tests.test_models_report.TestMalformedReport) ... ok Can't add elements with the same id. ... a plot with id 'a' has already been added to . [ERROR] 2021-10-12 08:49:57,288Z [pbcommand.models.report is_unique 115] a plot with id 'a' has already been added to . ok test_empty_id (tests.test_models_report.TestReportModel) ... id '' for Report must contain only lower-case alphanumeric or underscore characters [ERROR] 2021-10-12 08:49:57,288Z [pbcommand.models.report __init__ 100] id '' for Report must contain only lower-case alphanumeric or underscore characters ok test_from_simple_dict (tests.test_models_report.TestReportModel) ... ok test_get_attribute_by_id (tests.test_models_report.TestReportModel) ... ok test_get_attribute_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok test_get_column_by_id (tests.test_models_report.TestReportModel) ... ok test_get_column_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok test_get_plot_by_id (tests.test_models_report.TestReportModel) ... ok test_get_plot_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok test_get_plotgroup_by_id (tests.test_models_report.TestReportModel) ... ok test_get_plotgroup_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok test_get_table_by_id (tests.test_models_report.TestReportModel) ... ok test_get_table_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok Ids must be alphanumberic with underscores ... id 'a b' for Attribute must contain only lower-case alphanumeric or underscore characters [ERROR] 2021-10-12 08:49:57,291Z [pbcommand.models.report __init__ 100] id 'a b' for Attribute must contain only lower-case alphanumeric or underscore characters ok test_merge (tests.test_models_report.TestReportModel) ... ok test_merge_tables (tests.test_models_report.TestReportModel) ... [INFO] 2021-10-12 08:49:57,292Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/laa_report1.json [INFO] 2021-10-12 08:49:57,292Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/laa_report2.json ok Can't create a report with an empty namespace. ... id '' for Report must contain only lower-case alphanumeric or underscore characters [ERROR] 2021-10-12 08:49:57,293Z [pbcommand.models.report __init__ 100] id '' for Report must contain only lower-case alphanumeric or underscore characters ok Can't create a report without a namespace. ... ok The id of report sub elements is prepended with the id of the parent ... [DEBUG] 2021-10-12 08:49:57,297Z [tests.test_models_report test_to_dict 95] {'_comment': 'Generated with pbcommand version 1.1.1 at 2021-10-12T22:49:57.294471', 'attributes': [{'id': 'redfang.a', 'name': None, 'value': 'b'}, {'id': 'redfang.a2', 'name': None, 'value': 'b2'}], 'dataset_uuids': [], 'id': 'redfang', 'plotGroups': [{'id': 'redfang.pgid', 'legend': None, 'plots': [{'caption': None, 'id': 'redfang.pgid.pid', 'image': 'anImg', 'plotType': 'image', 'title': None}, {'caption': None, 'id': 'redfang.pgid.pid2', 'image': 'anImg2', 'plotType': 'image', 'title': None}], 'thumbnail': None, 'title': None}], 'tables': [{'columns': [{'header': None, 'id': 'redfang.tabid.c1', 'values': []}], 'id': 'redfang.tabid', 'title': None}], 'title': 'Report redfang', 'uuid': '22ff97cf-dfc8-4986-ae82-08370af80f7e', 'version': '1.0.1'} ok Multiple complex elements. ... [DEBUG] 2021-10-12 08:49:57,297Z [tests.test_models_report test_to_dict_multi 151] {'tables': [{'id': 'redfang.tabid', 'columns': [{'header': None, 'values': [], 'id': 'redfang.tabid.c1'}], 'title': None}, {'id': 'redfang.tabid2', 'columns': [{'header': None, 'values': [], 'id': 'redfang.tabid2.c2'}], 'title': None}], 'uuid': 'd4e61ac7-cde9-42ba-884f-848dde1c18c9', 'title': 'Report redfang', '_comment': 'Generated with pbcommand version 1.1.1 at 2021-10-12T22:49:57.297713', 'dataset_uuids': [], 'version': '1.0.1', 'attributes': [{'name': None, 'value': 'b', 'id': 'redfang.a'}, {'name': None, 'value': 'b2', 'id': 'redfang.a2'}], 'id': 'redfang', 'plotGroups': [{'id': 'redfang.pgid', 'thumbnail': None, 'plots': [{'id': 'redfang.pgid.pid', 'caption': None, 'image': 'anImg', 'plotType': 'image', 'title': None}, {'id': 'redfang.pgid.pid2', 'caption': None, 'image': 'anImg2', 'plotType': 'image', 'title': None}], 'legend': None, 'title': None}, {'id': 'redfang.pgid2', 'thumbnail': None, 'plots': [{'id': 'redfang.pgid2.pid2', 'caption': None, 'image': 'anImg2', 'plotType': 'image', 'title': None}, {'id': 'redfang.pgid2.pid22', 'caption': None, 'image': 'anImg22', 'plotType': 'image', 'title': None}], 'legend': None, 'title': None}]} [INFO] 2021-10-12 08:49:57,297Z [tests.test_models_report test_to_dict_multi 177] ok test_uppercase_id (tests.test_models_report.TestReportModel) ... id 'A' for Report must contain only lower-case alphanumeric or underscore characters [ERROR] 2021-10-12 08:49:57,298Z [pbcommand.models.report __init__ 100] id 'A' for Report must contain only lower-case alphanumeric or underscore characters ok test_version_and_changelist (tests.test_models_report.TestReportModel) ... [INFO] 2021-10-12 08:49:57,298Z [tests.test_models_report test_version_and_changelist 113] {'_comment': 'Generated with pbcommand version 1.1.1 at 2021-10-12T22:49:57.298359', 'attributes': [], 'dataset_uuids': [], 'id': 'example', 'plotGroups': [], 'tables': [], 'title': 'Report example', 'uuid': 'cb2c85ee-8b82-4639-ad2c-b97690cd6ab4', 'version': '1.0.1'} ok test_sanity (tests.test_models_report.TestReportSchemaVersion100) ... [INFO] 2021-10-12 08:49:57,299Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/example_version_1_0_0.json ok test_apply_view (tests.test_models_report.TestReportSpec) ... [INFO] 2021-10-12 08:49:57,302Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/test_report2.json ok test_format_metric (tests.test_models_report.TestReportSpec) ... ok test_report_validation (tests.test_models_report.TestReportSpec) ... [INFO] 2021-10-12 08:49:57,304Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/test_report.json ok test_sanity (tests.test_models_report.TestRepotSchemaVersion100WithPlots) ... Report test_report failed validation against spec: Attribute attribute1 has value of type float (expected ) Attribute attribute5 not found in spec [INFO] 2021-10-12 08:49:57,306Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/example_with_plot.json ok Test exception of handling Attribute with int ids ... ok Can't create an attribute without an id. ... ok test_eq (tests.test_models_report_attribute.TestAttribute) ... ok test_repr (tests.test_models_report_attribute.TestAttribute) ... [INFO] 2021-10-12 08:49:57,307Z [tests.test_models_report_attribute test_repr 45] ok Test attribute to_dict function ... ok Test: Can't create a Column without an id. ... ok test_repr (tests.test_models_report_column.TestColumn) ... ok Initial with thumbnail ... [INFO] 2021-10-12 08:49:57,310Z [tests.test_models_report_plot test_init_with_thumbnail 42] {'caption': 'Awesome image', 'id': 'plot_1', 'image': 'my_image.png', 'plotType': 'image', 'title': None} ok Can't create an plot without an id. ... ok Can't create an plot without an image. ... ok test_plotly_plot (tests.test_models_report_plot.TestPlot) ... ok Test plot to dictionary method ... [INFO] 2021-10-12 08:49:57,311Z [tests.test_models_report_plot test_to_dict 31] { 'caption': 'foo is the caption', 'id': '123', 'image': 'foo', 'plotType': 'image', 'title': None} [INFO] 2021-10-12 08:49:57,311Z [tests.test_models_report_plot test_to_dict 32] ok Validate type when adding Plots. ... ok Test constructor with kwargs ... ok Can't add plots with duplicate ids. ... a plot with id 'id' has already been added to . [ERROR] 2021-10-12 08:49:57,312Z [pbcommand.models.report is_unique 115] a plot with id 'id' has already been added to . ok Can't create an plotGroup without an id. ... ok Test plotGroup to_dict function. ... [DEBUG] 2021-10-12 08:49:57,313Z [tests.test_models_report_plotgroup test_to_dict 42] {'id': '123', 'legend': 'foo legend', 'plots': [{'caption': 'a caption', 'id': '123.id', 'image': 'i1', 'plotType': 'image', 'title': None}], 'thumbnail': 'foo thumbnail', 'title': 'foo title'} [INFO] 2021-10-12 08:49:57,313Z [tests.test_models_report_plotgroup test_to_dict 49] ok Basic check for column values ... ok Test Columns ... ok Smoke test for conversion to str ... [INFO] 2021-10-12 08:49:57,315Z [tests.test_models_report_table test_str 61] Table id:my_table_with_values --------------------- One Two Three --------------------- 0 a file1 1 b file2 2 c file3 ok test_to_csv (tests.test_models_report_table.TestBasicTable) ... ok Conversion to dictionary ... [INFO] 2021-10-12 08:49:57,316Z [tests.test_models_report_table test_to_dict 76] {'id': 'my_table_with_values', 'columns': [{'header': 'One', 'values': [0, 1, 2], 'id': 'my_table_with_values.one'}, {'header': 'Two', 'values': ['a', 'b', 'c'], 'id': 'my_table_with_values.two'}, {'header': 'Three', 'values': ['file1', 'file2', 'file3'], 'id': 'my_table_with_values.three'}], 'title': None} ok Basic check for column values ... ok Test Columns ... ok Smoke test for conversion to str ... [INFO] 2021-10-12 08:49:57,317Z [tests.test_models_report_table test_str 23] Table id:my_table --------------------- One Two Three --------------------- ok Conversion to dictionary ... [INFO] 2021-10-12 08:49:57,318Z [tests.test_models_report_table test_to_dict 38] {'id': 'my_table', 'columns': [{'header': 'One', 'values': [], 'id': 'my_table.one'}, {'header': 'Two', 'values': [], 'id': 'my_table.two'}, {'header': 'Three', 'values': [], 'id': 'my_table.three'}], 'title': None} ok Cannot add column with duplicate id. ... a plot with id '2' has already been added to . [ERROR] 2021-10-12 08:49:57,318Z [pbcommand.models.report is_unique 115] a plot with id '2' has already been added to . ok Added data values by column identifier. ... ok Append data to columns by index. ... ok Can't create an Table without an id. ... ok test_catch_output_file_extension (tests.test_parsers.TestParsers) ... ok test_input_output_files (tests.test_parsers.TestParsers) ... ok test_misc_parser_types (tests.test_parsers.TestParsers) ... ok test_write_chunks (tests.test_pb_io_common.TestWriteChunk) ... [DEBUG] 2021-10-12 08:49:57,326Z [tests.test_pb_io_common test_write_chunks 26] [, , , , ] [DEBUG] 2021-10-12 08:49:57,327Z [pbcommand.pb_io.common write_pipeline_chunks 28] Write 5 chunks to /tmp/tmpoRIJBipipeline-chunks/tmp3RoVZa_chunk.json ok [INFO] 2021-10-12 08:49:57,328Z [tests.test_pb_io_conditions _loader 18] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-conditions/reseq-conditions-01.json test_condition_a (tests.test_pb_io_conditions.TestSerializationOfResequencingConditions) ... [INFO] 2021-10-12 08:49:57,328Z [tests.test_pb_io_conditions test_condition_a 35] ReseqConditions(conditions=[ReseqCondition(cond_id='cond_alpha', subreadset='/path/to/subreadset-01.xml', alignmentset='/path/to/alignmentset-A.xml', referenceset='/path/to/reference.xml'), ReseqCondition(cond_id='cond_alpha', subreadset='/path/to/subreadset-02.xml', alignmentset='/path/to/alignmentset-B.xml', referenceset='/path/to/reference.xml'), ReseqCondition(cond_id='cond_beta', subreadset='/path/to/subreadset-03.xml', alignmentset='/path/to/alignmentset-C.xml', referenceset='/path/to/reference.xml')]) ok test_condition_n (tests.test_pb_io_conditions.TestSerializationOfResequencingConditions) ... ok test_condition_paths_abs (tests.test_pb_io_conditions.TestSerializationOfResequencingConditions) ... ok [INFO] 2021-10-12 08:49:57,329Z [tests.test_pb_io_conditions _loader 18] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-conditions/reseq-conditions-02.json test_condition_a (tests.test_pb_io_conditions.TestSerializationOfResequencingConditionsWithRelativePath) ... [INFO] 2021-10-12 08:49:57,329Z [tests.test_pb_io_conditions test_condition_a 35] ReseqConditions(conditions=[ReseqCondition(cond_id='cond_alpha', subreadset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/subreadset-01.xml', alignmentset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/alignmentset-A.xml', referenceset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/reference.xml'), ReseqCondition(cond_id='cond_alpha', subreadset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/subreadset-02.xml', alignmentset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/alignmentset-B.xml', referenceset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/reference.xml'), ReseqCondition(cond_id='cond_beta', subreadset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/subreadset-03.xml', alignmentset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/alignmentset-C.xml', referenceset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/reference.xml')]) ok test_condition_n (tests.test_pb_io_conditions.TestSerializationOfResequencingConditionsWithRelativePath) ... ok test_condition_paths_abs (tests.test_pb_io_conditions.TestSerializationOfResequencingConditionsWithRelativePath) ... ok [INFO] 2021-10-12 08:49:57,331Z [tests.test_pb_io_report _to_report 19] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/filter_reports_adapters.json test_attributes (tests.test_pb_io_report.TestSerializationAdapterReport) ... ok test_id (tests.test_pb_io_report.TestSerializationAdapterReport) ... ok test_plotgroups (tests.test_pb_io_report.TestSerializationAdapterReport) ... ok test_plots (tests.test_pb_io_report.TestSerializationAdapterReport) ... ok [INFO] 2021-10-12 08:49:57,332Z [tests.test_pb_io_report _to_report 19] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/overview.json test_attributes (tests.test_pb_io_report.TestSerializationOverviewReport) ... ok test_id (tests.test_pb_io_report.TestSerializationOverviewReport) ... ok test_title (tests.test_pb_io_report.TestSerializationOverviewReport) ... ok test_uuid (tests.test_pb_io_report.TestSerializationOverviewReport) ... ok test_full_schema (tests.test_pb_io_tool_contract.TestLoadPipelinePresets) ... ok test_shorthand_options (tests.test_pb_io_tool_contract.TestLoadPipelinePresets) ... ok test_01 (tests.test_pb_io_tool_contract.TestLoadToolContract) ... ok test_tc_no_inputs (tests.test_pb_io_tool_contract.TestMalformedToolContract) ... ok test_01 (tests.test_pb_io_tool_contract.TestWriteResolvedToolContractAvro) ... [DEBUG] 2021-10-12 08:49:57,339Z [pbcommand.pb_io.tool_contract_io _write_records_to_avro 388] Write avro file to /tmp/tmpzIchkyrtc-app/tmpdrPOrH-resolved-tool-contract.avro ok test_01 (tests.test_pb_io_tool_contract_v1.TestLoadToolContract) ... ok test_tc_no_inputs (tests.test_pb_io_tool_contract_v1.TestMalformedToolContract) ... ok test_sanity (tests.test_resolver.TestGatherResolver) ... ok test_failure_modes (tests.test_resolver.TestResolver) ... ok test_sanity (tests.test_resolver.TestResolver) ... ok test_sanity (tests.test_resolver.TestScatterResolver) ... ok test_validate_pipeline_datastore_view_rules (tests.test_schema_validation.ValidateDataStoreViewRules) ... [INFO] 2021-10-12 08:49:57,347Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/pipeline-datastore-view-rules/rules_01.json' [INFO] 2021-10-12 08:49:57,347Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/pipeline-datastore-view-rules/rules_01.json ok test_validate_pipeline_presets (tests.test_schema_validation.ValidatePipelinePreset) ... [INFO] 2021-10-12 08:49:57,348Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/pipeline-presets/example-pipeline-presets.json' [INFO] 2021-10-12 08:49:57,348Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/pipeline-presets/example-pipeline-presets.json [INFO] 2021-10-12 08:49:57,349Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/pipeline-presets/example-pipeline-presets-typed.json' [INFO] 2021-10-12 08:49:57,349Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/pipeline-presets/example-pipeline-presets-typed.json ok test_validate_report_spec (tests.test_schema_validation.ValidateReportSpec) ... ok test_validate_resolved_tool_contracts (tests.test_schema_validation.ValidateResolvedToolContracts) ... [INFO] 2021-10-12 08:49:57,351Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/resolved_tool_contract_dev_app.json' [INFO] 2021-10-12 08:49:57,351Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/resolved_tool_contract_dev_app.json [INFO] 2021-10-12 08:49:57,352Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/resolved_contract_01.json' [INFO] 2021-10-12 08:49:57,352Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/resolved_contract_01.json [INFO] 2021-10-12 08:49:57,352Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/dev_mixed_app_resolved_tool_contract.json' [INFO] 2021-10-12 08:49:57,352Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/dev_mixed_app_resolved_tool_contract.json [INFO] 2021-10-12 08:49:57,352Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/dev_example_resolved_tool_contract.json' [INFO] 2021-10-12 08:49:57,352Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/dev_example_resolved_tool_contract.json ok test_validate_tool_contracts (tests.test_schema_validation.ValidateToolContracts) ... [INFO] 2021-10-12 08:49:57,353Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_txt_hello_tool_contract.json' [INFO] 2021-10-12 08:49:57,354Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_txt_hello_tool_contract.json [INFO] 2021-10-12 08:49:57,354Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_txt_custom_outs_tool_contract.json' [INFO] 2021-10-12 08:49:57,354Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_txt_custom_outs_tool_contract.json [INFO] 2021-10-12 08:49:57,355Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_qhello_world_tool_contract.json' [INFO] 2021-10-12 08:49:57,355Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_qhello_world_tool_contract.json [INFO] 2021-10-12 08:49:57,355Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_fastq2fasta_tool_contract.json' [INFO] 2021-10-12 08:49:57,355Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_fastq2fasta_tool_contract.json [INFO] 2021-10-12 08:49:57,356Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_app_tool_contract.json' [INFO] 2021-10-12 08:49:57,356Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_app_tool_contract.json [INFO] 2021-10-12 08:49:57,356Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_scatter_fasta_app_tool_contract.json' [INFO] 2021-10-12 08:49:57,357Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_scatter_fasta_app_tool_contract.json [INFO] 2021-10-12 08:49:57,357Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_mixed_app_tool_contract.json' [INFO] 2021-10-12 08:49:57,357Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_mixed_app_tool_contract.json [INFO] 2021-10-12 08:49:57,358Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_gather_fasta_app_tool_contract.json' [INFO] 2021-10-12 08:49:57,358Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_gather_fasta_app_tool_contract.json [INFO] 2021-10-12 08:49:57,358Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_example_tool_contract.json' [INFO] 2021-10-12 08:49:57,358Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_example_tool_contract.json [INFO] 2021-10-12 08:49:57,358Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_example_dev_txt_app_tool_contract.json' [INFO] 2021-10-12 08:49:57,359Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_example_dev_txt_app_tool_contract.json ok Test that the pb_requirements decorator monkey-patches test methods ... ok test_empty_list (tests.test_utils.TestCompose) ... ok test_no_args_list (tests.test_utils.TestCompose) ... ok test_partial (tests.test_utils.TestCompose) ... ok test_simple (tests.test_utils.TestCompose) ... ok test_get_parsed_args_log_level (tests.test_utils.TestLogging) ... ok test_basic (tests.test_utils.TestSingleton) ... ok test_get_dataset_metadata (tests.test_utils.TestUtils) ... SKIP: pbtestdata not available, skipping Test: Return abspath if file found ... ok Test: Raise IOError if file not found ... ls: 'this_file_does_not_exist' ei saa kasutada: No such file or directory ok Test: Return abspath if file found and not empty ... ok Test: Raise IOError if file found but empty ... ls: '/tmp/tmpnU5Rjcempty' ei saa kasutada: No such file or directory ok Test: Raise IOError if output does not exist ... ls: '/whatev' ei saa kasutada: No such file or directory ok test_validate_report (tests.test_validators.TestValidators) ... ok test_validate_report_fails (tests.test_validators.TestValidators) ... ok Test: Raise ValueError if report has path sep ... ok ---------------------------------------------------------------------- Ran 157 tests in 4.367s OK (SKIP=1) make[1]: Leaving directory '/build/python-pbcommand-1.1.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary LC_ALL=C.UTF-8 dh binary --with python2 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-pbcommand-1.1.1/debian/python-pbcommand running install running build running build_py running install_lib creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7 creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_gather_fasta_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_mixed_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_quick_hello_world.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_scatter_fasta_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_simple_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_txt_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/template_simple.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/template_subparser_simple.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/core.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/quick.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine/runner.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/common.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/conditions.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/parser.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/report.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/tool_contract.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/common.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/conditions.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/report.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/tool_contract_io.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/datastore.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/datastore_view_rules.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/pbreport.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/pipeline_presets.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/pipeline_presets_simple.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/pipeline_template_view_rules.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/report_spec.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/resolved_tool_contract.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/tool_contract.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/_service_access_layer.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/cli.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/models.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit/base_utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit/core.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit/nunit.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/common_options.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/interactive_resolver.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/resolver.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/validators.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/base_utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_common_cmdline_core.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_e2e_example_apps.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_engine_runner.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_load_resolved_tool_contract.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_common.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_common_pacbio_options.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_attribute.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_column.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_plot.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_plotgroup.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_table.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_parsers.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_common.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_conditions.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_report.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_tool_contract.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_tool_contract_v1.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_resolver.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_schema_validation.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_testkit.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_validators.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_app.py to dev_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_gather_fasta_app.py to dev_gather_fasta_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_mixed_app.py to dev_mixed_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_quick_hello_world.py to dev_quick_hello_world.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_scatter_fasta_app.py to dev_scatter_fasta_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_simple_app.py to dev_simple_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_txt_app.py to dev_txt_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/template_simple.py to template_simple.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/template_subparser_simple.py to template_subparser_simple.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/core.py to core.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/quick.py to quick.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/utils.py to utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine/runner.py to runner.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/common.py to common.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/conditions.py to conditions.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/parser.py to parser.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/report.py to report.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/tool_contract.py to tool_contract.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/common.py to common.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/conditions.py to conditions.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/report.py to report.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/tool_contract_io.py to tool_contract_io.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/_service_access_layer.py to _service_access_layer.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/cli.py to cli.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/models.py to models.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/utils.py to utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit/base_utils.py to base_utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit/core.py to core.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit/nunit.py to nunit.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/common_options.py to common_options.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/interactive_resolver.py to interactive_resolver.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/resolver.py to resolver.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/utils.py to utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/validators.py to validators.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/base_utils.py to base_utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_common_cmdline_core.py to test_common_cmdline_core.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_e2e_example_apps.py to test_e2e_example_apps.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_engine_runner.py to test_engine_runner.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_load_resolved_tool_contract.py to test_load_resolved_tool_contract.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_common.py to test_models_common.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_common_pacbio_options.py to test_models_common_pacbio_options.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report.py to test_models_report.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_attribute.py to test_models_report_attribute.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_column.py to test_models_report_column.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_plot.py to test_models_report_plot.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_plotgroup.py to test_models_report_plotgroup.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_table.py to test_models_report_table.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_parsers.py to test_parsers.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_common.py to test_pb_io_common.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_conditions.py to test_pb_io_conditions.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_report.py to test_pb_io_report.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_tool_contract.py to test_pb_io_tool_contract.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_tool_contract_v1.py to test_pb_io_tool_contract_v1.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_resolver.py to test_resolver.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_schema_validation.py to test_schema_validation.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_testkit.py to test_testkit.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_utils.py to test_utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_validators.py to test_validators.pyc running install_egg_info running egg_info creating pbcommand.egg-info writing requirements to pbcommand.egg-info/requires.txt writing pbcommand.egg-info/PKG-INFO writing top-level names to pbcommand.egg-info/top_level.txt writing dependency_links to pbcommand.egg-info/dependency_links.txt writing manifest file 'pbcommand.egg-info/SOURCES.txt' reading manifest file 'pbcommand.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'examples' warning: no files found matching '*.py' under directory 'examples' writing manifest file 'pbcommand.egg-info/SOURCES.txt' Copying pbcommand.egg-info to /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand-1.1.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pbcommand: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pbcommand: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pbcommand' in '../python-pbcommand_1.1.1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pbcommand_1.1.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3974162/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3974162/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3974162 and its subdirectories I: Current time: Tue Oct 12 22:50:04 +14 2021 I: pbuilder-time-stamp: 1634028604